A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Gene Dmel\Gapdh1

General Information
SymbolDmel\Gapdh1SpeciesD. melanogaster
NameGlyceraldehyde 3 phosphate dehydrogenase 1Annotation symbolCG12055
Feature typeprotein_coding_geneFlyBase IDFBgn0001091
Gene Model StatusCurrent Stock availability 5 publicly available
Also Known AsGapdh, GAPDH-1, GADPH
Genomic Location
Chromosome (arm)2RRecombination map
Cytogenetic map43E17-43E17Sequence location2R:3,679,406..3,680,885 [-]

Genomic Maps

GBrowse View Help
Beta
detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
The gene Glyceraldehyde 3 phosphate dehydrogenase 1 is referred to in FlyBase by the symbol Dmel\Gapdh1 (CG12055, FBgn0001091). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity. There is experimental evidence that it is involved in the biological process: glycolysis. 11 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, active site; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; Glyceraldehyde-3-phosphate dehydrogenase, type I; Glyceraldehyde/Erythrose phosphate dehydrogenase family; NAD(P)-binding domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of moderate expression. Peak expression observed at stages throughout the larval period, during late pupal stages, in stages of adults of both sexes. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult testis. Comments on Affy2 ProbeSet: ProbeSet 1640907_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of Gapdh1. Gene sequence location is 2R:3679406..3680885.

User Contributed Data
hide Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
Gene/Allele symbols may differ from current usage
Gapdh1: Glyceraldehyde dehydrogenase 1
One of two genes (Gapdh1 and Gapdh2) that code for the enzyme glyceraldehyde-3-phosphate dehydrogenase [G3PD (EC.1.2.12)]. These genes are expressed in almost all cells, especially those that undergo a high rate of glycolysis.
hide Recent Updates
Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
Update Feed
Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
43E17-43E17  
Limits computationally determined from genome sequence between P{EP}CanB2EP774 and P{lacW}lin19k01207&P{lacW}rnh1k07624  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
43E-43F  
(determined by in situ hybridisation)  
43E-43E  
(determined by in situ hybridisation)  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\Gapdh1 for information on other features GBrowse View Help
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0088829 FBtr0088830 FBtr0113050 FBtr0100479 FBtr0088903 FBtr0088831 FBpp0111963 FBpp0087906 FBpp0099914 FBpp0087977 FBpp0087907 FBti0033205 FBti0115123 FBti0025839 FBti0075857
Comments on Gene Model
Gene model reviewed during 5.49
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0088903
  1480
  332
FBtr0100479
  1330
  332
Additional Transcript Data & Comments
Reported size (kB)
1.6 (northern blot)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0087977  
35.4  
332  
8.42  
FBpp0099914  
35.4  
332  
8.42  
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
EPD - Eukarytoic Promoter Database, an annotated collection of POL II promoters
hide Expression Data
hideTranscript Expression
in situ
Stage
Tissue/Position (including subcellular localization)
Reference
Comment:maternally deposited
northern blot
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
hide Polypeptide Expression
immunolocalization
Stage
Tissue/Position (including subcellular localization)
Reference
mass spectroscopy
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
Glycolytic enzymes, including Gpdh protein are localized to M bands and Z discs, as visualized in the isolated myofibrils of flight muscles, where immunoreactivity appears as alternating bright and less-intense bands.
Marker for
Subcellular Localization (GO Cellular Component)
CV term
References
inferred from direct assay
inferred from direct assay
inferred from direct assay
hide Expression Deduced from Reporters
hide High-Throughput Expression Data
Associated Tools
Reference
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
hide FlyAtlas Anatomy Microarray

FlyAtlas Anatomical Expression Data

(FlyAtlas-RNA.adult)

(FlyAtlas-RNA.larva)


   Styles
   Scales

Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult testis.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (>999.999)

Linear, scaled to maximum expression level
Tissue   Expression Level
Larval Central Nervous System
 
 1928.575
Larval Midgut
 
 1274.4
Larval Hindgut
 
 2099.9
Larval Malpighian Tubules
 
 2307.1
Larval Fat Body
 
 4619.8
Larval Salivary Gland
 
 2743.7
Larval Trachea
 
 1928.575
Larval Carcass
 
 4431.875
Adult Head
 
 2264.6
Adult Eye
 
 2282.225
Adult Brain
 
 1692.2
Adult Thoracic-Abdominal Ganglion
 
 2128.8
Adult Crop
 
 3060.6
Adult Midgut
 
 1051.1
Adult Hindgut
 
 2996
Adult Malpighian Tubules
 
 2193.5
Adult Fat Body
 
 3201.4
Adult Salivary Gland
 
 6857.8
Adult Heart
 
 3309.3
Adult VirginFemale Spermatheca
 
 3359
Adult InseminatedFemale Spermatheca
 
 3158.3
Adult Ovary
 
 1673.8
Adult Testis
 
 189.3
Adult Male Accessory Gland
 
 1046.5
Adult Carcass
 
 4892.2
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 (1928.575)
Larval Midgut
 (1274.4)
Larval Hindgut
 (2099.9)
Larval Malpighian Tubules
 (2307.1)
Larval Fat Body
 (4619.8)
Larval Salivary Gland
 (2743.7)
Larval Trachea
 (1928.575)
Larval Carcass
 (4431.875)
Adult Head
 (2264.6)
Adult Eye
 (2282.225)
Adult Brain
 (1692.2)
Adult Thoracic-Abdominal Ganglion
 (2128.8)
Adult Crop
 (3060.6)
Adult Midgut
 (1051.1)
Adult Hindgut
 (2996)
Adult Malpighian Tubules
 (2193.5)
Adult Fat Body
 (3201.4)
Adult Salivary Gland
 (6857.8)
Adult Heart
 (3309.3)
Adult VirginFemale Spermatheca
 (3359)
Adult InseminatedFemale Spermatheca
 (3158.3)
Adult Ovary
 (1673.8)
Adult Testis
 
 189.3
Adult Male Accessory Gland
 (1046.5)
Adult Carcass
 (4892.2)
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 (1928.575)
Larval Midgut
 (1274.4)
Larval Hindgut
 (2099.9)
Larval Malpighian Tubules
 (2307.1)
Larval Fat Body
 (4619.8)
Larval Salivary Gland
 (2743.7)
Larval Trachea
 (1928.575)
Larval Carcass
 (4431.875)
Adult Head
 (2264.6)
Adult Eye
 (2282.225)
Adult Brain
 (1692.2)
Adult Thoracic-Abdominal Ganglion
 (2128.8)
Adult Crop
 (3060.6)
Adult Midgut
 1051.1
Adult Hindgut
 (2996)
Adult Malpighian Tubules
 (2193.5)
Adult Fat Body
 (3201.4)
Adult Salivary Gland
 (6857.8)
Adult Heart
 (3309.3)
Adult VirginFemale Spermatheca
 (3359)
Adult InseminatedFemale Spermatheca
 (3158.3)
Adult Ovary
 (1673.8)
Adult Testis
 
 189.3
Adult Male Accessory Gland
 1046.5
Adult Carcass
 (4892.2)
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 1928.575
Larval Midgut
 
 1274.4
Larval Hindgut
 
 2099.9
Larval Malpighian Tubules
 
 2307.1
Larval Fat Body
 
 4619.8
Larval Salivary Gland
 
 2743.7
Larval Trachea
 
 1928.575
Larval Carcass
 
 4431.875
Adult Head
 
 2264.6
Adult Eye
 
 2282.225
Adult Brain
 
 1692.2
Adult Thoracic-Abdominal Ganglion
 
 2128.8
Adult Crop
 
 3060.6
Adult Midgut
 
 1051.1
Adult Hindgut
 
 2996
Adult Malpighian Tubules
 
 2193.5
Adult Fat Body
 
 3201.4
Adult Salivary Gland
 
 6857.8
Adult Heart
 
 3309.3
Adult VirginFemale Spermatheca
 
 3359
Adult InseminatedFemale Spermatheca
 
 3158.3
Adult Ovary
 
 1673.8
Adult Testis
 
 189.3
Adult Male Accessory Gland
 
 1046.5
Adult Carcass
 
 4892.2
Expression Level Scale
 Very high 
log, scaled to maximum expression level
Tissue   Expression Level
Larval Central Nervous System
 
 1928.575
Larval Midgut
 
 1274.4
Larval Hindgut
 
 2099.9
Larval Malpighian Tubules
 
 2307.1
Larval Fat Body
 
 4619.8
Larval Salivary Gland
 
 2743.7
Larval Trachea
 
 1928.575
Larval Carcass
 
 4431.875
Adult Head
 
 2264.6
Adult Eye
 
 2282.225
Adult Brain
 
 1692.2
Adult Thoracic-Abdominal Ganglion
 
 2128.8
Adult Crop
 
 3060.6
Adult Midgut
 
 1051.1
Adult Hindgut
 
 2996
Adult Malpighian Tubules
 
 2193.5
Adult Fat Body
 
 3201.4
Adult Salivary Gland
 
 6857.8
Adult Heart
 
 3309.3
Adult VirginFemale Spermatheca
 
 3359
Adult InseminatedFemale Spermatheca
 
 3158.3
Adult Ovary
 
 1673.8
Adult Testis
 
 189.3
Adult Male Accessory Gland
 
 1046.5
Adult Carcass
 
 4892.2
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 (1928.575)
Larval Midgut
 (1274.4)
Larval Hindgut
 (2099.9)
Larval Malpighian Tubules
 (2307.1)
Larval Fat Body
 (4619.8)
Larval Salivary Gland
 (2743.7)
Larval Trachea
 (1928.575)
Larval Carcass
 (4431.875)
Adult Head
 (2264.6)
Adult Eye
 (2282.225)
Adult Brain
 (1692.2)
Adult Thoracic-Abdominal Ganglion
 (2128.8)
Adult Crop
 (3060.6)
Adult Midgut
 (1051.1)
Adult Hindgut
 (2996)
Adult Malpighian Tubules
 (2193.5)
Adult Fat Body
 (3201.4)
Adult Salivary Gland
 (6857.8)
Adult Heart
 (3309.3)
Adult VirginFemale Spermatheca
 (3359)
Adult InseminatedFemale Spermatheca
 (3158.3)
Adult Ovary
 (1673.8)
Adult Testis
 
 189.3
Adult Male Accessory Gland
 (1046.5)
Adult Carcass
 (4892.2)
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 (1928.575)
Larval Midgut
 1274.4
Larval Hindgut
 (2099.9)
Larval Malpighian Tubules
 (2307.1)
Larval Fat Body
 (4619.8)
Larval Salivary Gland
 (2743.7)
Larval Trachea
 (1928.575)
Larval Carcass
 (4431.875)
Adult Head
 (2264.6)
Adult Eye
 (2282.225)
Adult Brain
 1692.2
Adult Thoracic-Abdominal Ganglion
 (2128.8)
Adult Crop
 (3060.6)
Adult Midgut
 1051.1
Adult Hindgut
 (2996)
Adult Malpighian Tubules
 (2193.5)
Adult Fat Body
 (3201.4)
Adult Salivary Gland
 (6857.8)
Adult Heart
 (3309.3)
Adult VirginFemale Spermatheca
 (3359)
Adult InseminatedFemale Spermatheca
 (3158.3)
Adult Ovary
 1673.8
Adult Testis
 
 189.3
Adult Male Accessory Gland
 1046.5
Adult Carcass
 (4892.2)
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 1928.575
Larval Midgut
 
 1274.4
Larval Hindgut
 
 2099.9
Larval Malpighian Tubules
 
 2307.1
Larval Fat Body
 
 4619.8
Larval Salivary Gland
 
 2743.7
Larval Trachea
 
 1928.575
Larval Carcass
 
 4431.875
Adult Head
 
 2264.6
Adult Eye
 
 2282.225
Adult Brain
 
 1692.2
Adult Thoracic-Abdominal Ganglion
 
 2128.8
Adult Crop
 
 3060.6
Adult Midgut
 
 1051.1
Adult Hindgut
 
 2996
Adult Malpighian Tubules
 
 2193.5
Adult Fat Body
 
 3201.4
Adult Salivary Gland
 
 6857.8
Adult Heart
 
 3309.3
Adult VirginFemale Spermatheca
 
 3359
Adult InseminatedFemale Spermatheca
 
 3158.3
Adult Ovary
 
 1673.8
Adult Testis
 
 189.3
Adult Male Accessory Gland
 
 1046.5
Adult Carcass
 
 4892.2
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body
 
 
Adult Salivary Gland
 
 
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass
 
 

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 2264.6
 
NA 
Eye
 
 2282.225
 
NA 
Brain
 
 1692.2
 
1928.575 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 2128.8
 
NA 
Crop
 
 3060.6
 
1274.4 
Midgut
 
 1051.1
 
2099.9 
Hindgut
 
 2996
 
2307.1 
Malpighian Tubules
 
 2193.5
 
4619.8 
Fat Body
 
 3201.4
 
2743.7 
Salivary Gland
 
 6857.8
 
NA 
Heart
 
 3309.3
 
1928.575 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 3359
 
NA 
InseminatedFemale Spermatheca
 
 3158.3
 
NA 
Ovary
 
 1673.8
 
NA 
Testis
 
 189.3
 
NA 
Male Accessory Gland
 
 1046.5
 
4431.875 
Carcass
 
 4892.2

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 111
central nervous system, larvae L3
 
 97
central nervous system, pupae P8
 
 64
head, virgin 1-day female
 
 520
head, virgin 4-day female
 
 249
head, virgin 20-day female
 
 220
head, mated 1-day female
 
 383
head, mated 4-day female
 
 174
head, mated 20-day female
 
 189
head, mated 1-day male
 
 591
head, mated 4-day male
 
 268
head, mated 20-day male
 
 265
salivary gland, larvae L3 wandering
 
 31
salivary gland, white prepupae
 
 47
digestive system, larvae L3 wandering
 
 73
digestive system, 1-day adult
 
 233
digestive system, 4-day adult
 
 122
digestive system, 20-day adult
 
 141
fat body, larvae L3 wandering
 
 407
fat body, white prepupae
 
 187
fat body, pupae P8
 
 104
carcass, larvae L3 wandering
 
 235
carcass, 1-day adult
 
 1717
carcass, 4-day adult
 
 614
carcass, 20-day adult
 
 235
ovary, virgin 4-day female
 
 235
ovary, mated 4-day female
 
 204
testis, mated 4-day male
 
 55
accessory gland, mated 4-day male
 
 91
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Linear, scaled to Moderate expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 (111)
central nervous system, larvae L3
 (97)
central nervous system, pupae P8
 (64)
head, virgin 1-day female
 (520)
head, virgin 4-day female
 (249)
head, virgin 20-day female
 (220)
head, mated 1-day female
 (383)
head, mated 4-day female
 (174)
head, mated 20-day female
 (189)
head, mated 1-day male
 (591)
head, mated 4-day male
 (268)
head, mated 20-day male
 (265)
salivary gland, larvae L3 wandering
 (31)
salivary gland, white prepupae
 (47)
digestive system, larvae L3 wandering
 (73)
digestive system, 1-day adult
 (233)
digestive system, 4-day adult
 (122)
digestive system, 20-day adult
 (141)
fat body, larvae L3 wandering
 (407)
fat body, white prepupae
 (187)
fat body, pupae P8
 (104)
carcass, larvae L3 wandering
 (235)
carcass, 1-day adult
 (1717)
carcass, 4-day adult
 (614)
carcass, 20-day adult
 (235)
ovary, virgin 4-day female
 (235)
ovary, mated 4-day female
 (204)
testis, mated 4-day male
 (55)
accessory gland, mated 4-day male
 (91)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 (111)
central nervous system, larvae L3
 
 97
central nervous system, pupae P8
 
 64
head, virgin 1-day female
 (520)
head, virgin 4-day female
 (249)
head, virgin 20-day female
 (220)
head, mated 1-day female
 (383)
head, mated 4-day female
 (174)
head, mated 20-day female
 (189)
head, mated 1-day male
 (591)
head, mated 4-day male
 (268)
head, mated 20-day male
 (265)
salivary gland, larvae L3 wandering
 
 31
salivary gland, white prepupae
 
 47
digestive system, larvae L3 wandering
 
 73
digestive system, 1-day adult
 (233)
digestive system, 4-day adult
 (122)
digestive system, 20-day adult
 (141)
fat body, larvae L3 wandering
 (407)
fat body, white prepupae
 (187)
fat body, pupae P8
 104
carcass, larvae L3 wandering
 (235)
carcass, 1-day adult
 (1717)
carcass, 4-day adult
 (614)
carcass, 20-day adult
 (235)
ovary, virgin 4-day female
 (235)
ovary, mated 4-day female
 (204)
testis, mated 4-day male
 
 55
accessory gland, mated 4-day male
 
 91
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 111
central nervous system, larvae L3
 
 97
central nervous system, pupae P8
 
 64
head, virgin 1-day female
 
 520
head, virgin 4-day female
 
 249
head, virgin 20-day female
 
 220
head, mated 1-day female
 
 383
head, mated 4-day female
 
 174
head, mated 20-day female
 
 189
head, mated 1-day male
 
 591
head, mated 4-day male
 
 268
head, mated 20-day male
 
 265
salivary gland, larvae L3 wandering
 
 31
salivary gland, white prepupae
 
 47
digestive system, larvae L3 wandering
 
 73
digestive system, 1-day adult
 
 233
digestive system, 4-day adult
 
 122
digestive system, 20-day adult
 
 141
fat body, larvae L3 wandering
 
 407
fat body, white prepupae
 
 187
fat body, pupae P8
 
 104
carcass, larvae L3 wandering
 
 235
carcass, 1-day adult
 
 1717
carcass, 4-day adult
 
 614
carcass, 20-day adult
 
 235
ovary, virgin 4-day female
 
 235
ovary, mated 4-day female
 
 204
testis, mated 4-day male
 
 55
accessory gland, mated 4-day male
 
 91
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 111
central nervous system, larvae L3
 
 97
central nervous system, pupae P8
 
 64
head, virgin 1-day female
 
 520
head, virgin 4-day female
 
 249
head, virgin 20-day female
 
 220
head, mated 1-day female
 
 383
head, mated 4-day female
 
 174
head, mated 20-day female
 
 189
head, mated 1-day male
 
 591
head, mated 4-day male
 
 268
head, mated 20-day male
 
 265
salivary gland, larvae L3 wandering
 
 31
salivary gland, white prepupae
 
 47
digestive system, larvae L3 wandering
 
 73
digestive system, 1-day adult
 
 233
digestive system, 4-day adult
 
 122
digestive system, 20-day adult
 
 141
fat body, larvae L3 wandering
 
 407
fat body, white prepupae
 
 187
fat body, pupae P8
 
 104
carcass, larvae L3 wandering
 
 235
carcass, 1-day adult
 
 1717
carcass, 4-day adult
 
 614
carcass, 20-day adult
 
 235
ovary, virgin 4-day female
 
 235
ovary, mated 4-day female
 
 204
testis, mated 4-day male
 
 55
accessory gland, mated 4-day male
 
 91
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to Moderate expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 (111)
central nervous system, larvae L3
 (97)
central nervous system, pupae P8
 (64)
head, virgin 1-day female
 (520)
head, virgin 4-day female
 (249)
head, virgin 20-day female
 (220)
head, mated 1-day female
 (383)
head, mated 4-day female
 (174)
head, mated 20-day female
 (189)
head, mated 1-day male
 (591)
head, mated 4-day male
 (268)
head, mated 20-day male
 (265)
salivary gland, larvae L3 wandering
 31
salivary gland, white prepupae
 (47)
digestive system, larvae L3 wandering
 (73)
digestive system, 1-day adult
 (233)
digestive system, 4-day adult
 (122)
digestive system, 20-day adult
 (141)
fat body, larvae L3 wandering
 (407)
fat body, white prepupae
 (187)
fat body, pupae P8
 (104)
carcass, larvae L3 wandering
 (235)
carcass, 1-day adult
 (1717)
carcass, 4-day adult
 (614)
carcass, 20-day adult
 (235)
ovary, virgin 4-day female
 (235)
ovary, mated 4-day female
 (204)
testis, mated 4-day male
 (55)
accessory gland, mated 4-day male
 (91)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 111
central nervous system, larvae L3
 
 97
central nervous system, pupae P8
 
 64
head, virgin 1-day female
 (520)
head, virgin 4-day female
 (249)
head, virgin 20-day female
 (220)
head, mated 1-day female
 (383)
head, mated 4-day female
 (174)
head, mated 20-day female
 (189)
head, mated 1-day male
 (591)
head, mated 4-day male
 (268)
head, mated 20-day male
 (265)
salivary gland, larvae L3 wandering
 
 31
salivary gland, white prepupae
 
 47
digestive system, larvae L3 wandering
 
 73
digestive system, 1-day adult
 (233)
digestive system, 4-day adult
 122
digestive system, 20-day adult
 141
fat body, larvae L3 wandering
 (407)
fat body, white prepupae
 (187)
fat body, pupae P8
 104
carcass, larvae L3 wandering
 (235)
carcass, 1-day adult
 (1717)
carcass, 4-day adult
 (614)
carcass, 20-day adult
 (235)
ovary, virgin 4-day female
 (235)
ovary, mated 4-day female
 (204)
testis, mated 4-day male
 
 55
accessory gland, mated 4-day male
 
 91
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 111
central nervous system, larvae L3
 
 97
central nervous system, pupae P8
 
 64
head, virgin 1-day female
 
 520
head, virgin 4-day female
 
 249
head, virgin 20-day female
 
 220
head, mated 1-day female
 
 383
head, mated 4-day female
 
 174
head, mated 20-day female
 
 189
head, mated 1-day male
 
 591
head, mated 4-day male
 
 268
head, mated 20-day male
 
 265
salivary gland, larvae L3 wandering
 
 31
salivary gland, white prepupae
 
 47
digestive system, larvae L3 wandering
 
 73
digestive system, 1-day adult
 
 233
digestive system, 4-day adult
 
 122
digestive system, 20-day adult
 
 141
fat body, larvae L3 wandering
 
 407
fat body, white prepupae
 
 187
fat body, pupae P8
 
 104
carcass, larvae L3 wandering
 
 235
carcass, 1-day adult
 
 1717
carcass, 4-day adult
 
 614
carcass, 20-day adult
 
 235
ovary, virgin 4-day female
 
 235
ovary, mated 4-day female
 
 204
testis, mated 4-day male
 
 55
accessory gland, mated 4-day male
 
 91
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 
central nervous system, larvae L3
 
 
central nervous system, pupae P8
 
 
head, virgin 1-day female
 
 
head, virgin 4-day female
 
 
head, virgin 20-day female
 
 
head, mated 1-day female
 
 
head, mated 4-day female
 
 
head, mated 20-day female
 
 
head, mated 1-day male
 
 
head, mated 4-day male
 
 
head, mated 20-day male
 
 
salivary gland, larvae L3 wandering
 
 
salivary gland, white prepupae
 
 
digestive system, larvae L3 wandering
 
 
digestive system, 1-day adult
 
 
digestive system, 4-day adult
 
 
digestive system, 20-day adult
 
 
fat body, larvae L3 wandering
 
 
fat body, white prepupae
 
 
fat body, pupae P8
 
 
carcass, larvae L3 wandering
 
 
carcass, 1-day adult
 
 
carcass, 4-day adult
 
 
carcass, 20-day adult
 
 
ovary, virgin 4-day female
 
 
ovary, mated 4-day female
 
 
testis, mated 4-day male
 
 
accessory gland, mated 4-day male
 
 

hide modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)


   Styles
   Scales

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of moderate expression. Peak expression observed at stages throughout the larval period, during late pupal stages, in stages of adults of both sexes.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 465
embryo 02-04hr
 
 65
embryo 04-06hr
 
 11
embryo 06-08hr
 
 7
embryo 08-10hr
 
 11
embryo 10-12hr
 
 20
embryo 12-14hr
 
 29
embryo 14-16hr
 
 190
embryo 16-18hr
 
 257
embryo 18-20hr
 
 353
embryo 20-22hr
 
 425
embryo 22-24hr
 
 378
larva L1
 
 1130
larva L2
 
 1359
larva L3 12hr old
 
 1666
larva L3 puffstage 1-2
 
 1459
larva L3 puffstage 3-6
 
 861
larva L3 puffstage 7-9
 
 376
white prepupae new
 
 246
white prepupae 12hr
 
 159
white prepupae 24hr
 
 146
pupae 2d postWPP
 
 388
pupae 3d postWPP
 
 1144
pupae 4d postWPP
 
 2375
adult male 01day
 
 2138
adult male 05day
 
 1690
adult male 30day
 
 410
adult female 01day
 
 2057
adult female 05day
 
 668
adult female 30day
 
 477
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (465)
embryo 02-04hr
 (65)
embryo 04-06hr
 
 11
embryo 06-08hr
 
 7
embryo 08-10hr
 
 11
embryo 10-12hr
 
 20
embryo 12-14hr
 (29)
embryo 14-16hr
 (190)
embryo 16-18hr
 (257)
embryo 18-20hr
 (353)
embryo 20-22hr
 (425)
embryo 22-24hr
 (378)
larva L1
 (1130)
larva L2
 (1359)
larva L3 12hr old
 (1666)
larva L3 puffstage 1-2
 (1459)
larva L3 puffstage 3-6
 (861)
larva L3 puffstage 7-9
 (376)
white prepupae new
 (246)
white prepupae 12hr
 (159)
white prepupae 24hr
 (146)
pupae 2d postWPP
 (388)
pupae 3d postWPP
 (1144)
pupae 4d postWPP
 (2375)
adult male 01day
 (2138)
adult male 05day
 (1690)
adult male 30day
 (410)
adult female 01day
 (2057)
adult female 05day
 (668)
adult female 30day
 (477)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 (465)
embryo 02-04hr
 
 65
embryo 04-06hr
 
 11
embryo 06-08hr
 
 7
embryo 08-10hr
 
 11
embryo 10-12hr
 
 20
embryo 12-14hr
 
 29
embryo 14-16hr
 (190)
embryo 16-18hr
 (257)
embryo 18-20hr
 (353)
embryo 20-22hr
 (425)
embryo 22-24hr
 (378)
larva L1
 (1130)
larva L2
 (1359)
larva L3 12hr old
 (1666)
larva L3 puffstage 1-2
 (1459)
larva L3 puffstage 3-6
 (861)
larva L3 puffstage 7-9
 (376)
white prepupae new
 (246)
white prepupae 12hr
 (159)
white prepupae 24hr
 (146)
pupae 2d postWPP
 (388)
pupae 3d postWPP
 (1144)
pupae 4d postWPP
 (2375)
adult male 01day
 (2138)
adult male 05day
 (1690)
adult male 30day
 (410)
adult female 01day
 (2057)
adult female 05day
 (668)
adult female 30day
 (477)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 465
embryo 02-04hr
 
 65
embryo 04-06hr
 
 11
embryo 06-08hr
 
 7
embryo 08-10hr
 
 11
embryo 10-12hr
 
 20
embryo 12-14hr
 
 29
embryo 14-16hr
 
 190
embryo 16-18hr
 
 257
embryo 18-20hr
 
 353
embryo 20-22hr
 
 425
embryo 22-24hr
 
 378
larva L1
 
 1130
larva L2
 
 1359
larva L3 12hr old
 
 1666
larva L3 puffstage 1-2
 
 1459
larva L3 puffstage 3-6
 
 861
larva L3 puffstage 7-9
 
 376
white prepupae new
 
 246
white prepupae 12hr
 
 159
white prepupae 24hr
 
 146
pupae 2d postWPP
 
 388
pupae 3d postWPP
 
 1144
pupae 4d postWPP
 
 2375
adult male 01day
 
 2138
adult male 05day
 
 1690
adult male 30day
 
 410
adult female 01day
 
 2057
adult female 05day
 
 668
adult female 30day
 
 477
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 465
embryo 02-04hr
 
 65
embryo 04-06hr
 
 11
embryo 06-08hr
 
 7
embryo 08-10hr
 
 11
embryo 10-12hr
 
 20
embryo 12-14hr
 
 29
embryo 14-16hr
 
 190
embryo 16-18hr
 
 257
embryo 18-20hr
 
 353
embryo 20-22hr
 
 425
embryo 22-24hr
 
 378
larva L1
 
 1130
larva L2
 
 1359
larva L3 12hr old
 
 1666
larva L3 puffstage 1-2
 
 1459
larva L3 puffstage 3-6
 
 861
larva L3 puffstage 7-9
 
 376
white prepupae new
 
 246
white prepupae 12hr
 
 159
white prepupae 24hr
 
 146
pupae 2d postWPP
 
 388
pupae 3d postWPP
 
 1144
pupae 4d postWPP
 
 2375
adult male 01day
 
 2138
adult male 05day
 
 1690
adult male 30day
 
 410
adult female 01day
 
 2057
adult female 05day
 
 668
adult female 30day
 
 477
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (465)
embryo 02-04hr
 (65)
embryo 04-06hr
 
 11
embryo 06-08hr
 
 7
embryo 08-10hr
 
 11
embryo 10-12hr
 
 20
embryo 12-14hr
 29
embryo 14-16hr
 (190)
embryo 16-18hr
 (257)
embryo 18-20hr
 (353)
embryo 20-22hr
 (425)
embryo 22-24hr
 (378)
larva L1
 (1130)
larva L2
 (1359)
larva L3 12hr old
 (1666)
larva L3 puffstage 1-2
 (1459)
larva L3 puffstage 3-6
 (861)
larva L3 puffstage 7-9
 (376)
white prepupae new
 (246)
white prepupae 12hr
 (159)
white prepupae 24hr
 (146)
pupae 2d postWPP
 (388)
pupae 3d postWPP
 (1144)
pupae 4d postWPP
 (2375)
adult male 01day
 (2138)
adult male 05day
 (1690)
adult male 30day
 (410)
adult female 01day
 (2057)
adult female 05day
 (668)
adult female 30day
 (477)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 (465)
embryo 02-04hr
 
 65
embryo 04-06hr
 
 11
embryo 06-08hr
 
 7
embryo 08-10hr
 
 11
embryo 10-12hr
 
 20
embryo 12-14hr
 
 29
embryo 14-16hr
 (190)
embryo 16-18hr
 (257)
embryo 18-20hr
 (353)
embryo 20-22hr
 (425)
embryo 22-24hr
 (378)
larva L1
 (1130)
larva L2
 (1359)
larva L3 12hr old
 (1666)
larva L3 puffstage 1-2
 (1459)
larva L3 puffstage 3-6
 (861)
larva L3 puffstage 7-9
 (376)
white prepupae new
 (246)
white prepupae 12hr
 (159)
white prepupae 24hr
 (146)
pupae 2d postWPP
 (388)
pupae 3d postWPP
 (1144)
pupae 4d postWPP
 (2375)
adult male 01day
 (2138)
adult male 05day
 (1690)
adult male 30day
 (410)
adult female 01day
 (2057)
adult female 05day
 (668)
adult female 30day
 (477)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 465
embryo 02-04hr
 
 65
embryo 04-06hr
 
 11
embryo 06-08hr
 
 7
embryo 08-10hr
 
 11
embryo 10-12hr
 
 20
embryo 12-14hr
 
 29
embryo 14-16hr
 
 190
embryo 16-18hr
 
 257
embryo 18-20hr
 
 353
embryo 20-22hr
 
 425
embryo 22-24hr
 
 378
larva L1
 
 1130
larva L2
 
 1359
larva L3 12hr old
 
 1666
larva L3 puffstage 1-2
 
 1459
larva L3 puffstage 3-6
 
 861
larva L3 puffstage 7-9
 
 376
white prepupae new
 
 246
white prepupae 12hr
 
 159
white prepupae 24hr
 
 146
pupae 2d postWPP
 
 388
pupae 3d postWPP
 
 1144
pupae 4d postWPP
 
 2375
adult male 01day
 
 2138
adult male 05day
 
 1690
adult male 30day
 
 410
adult female 01day
 
 2057
adult female 05day
 
 668
adult female 30day
 
 477
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

modENCODE Temporal Expression Data (Graveley et al., 2011)
hide modENCODE Cell Lines RNA-Seq

modENCODE Cell Line Expression Data

(modENCODE_mRNA-Seq_cell.A)

(modENCODE_mRNA-Seq_cell.B)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Cell Line   Expression Level
Schneider line 2 S2R+
 
 296
Schneider line 2 Sg4
 
 151
embryonic 1182-4H
 
 141
embryonic GM2
 
 101
embryonic Kc167
 
 138
embryonic S1
 
 121
embryonic S3
 
 124
leg disc CME L1
 
 146
wing disc CME-W2
 
 160
wing disc ML-DmD8
 
 196
wing disc ML-DmD9
 
 218
wing disc ML-DmD16-c3
 
 144
wing disc ML-DmD21
 
 163
wing disc ML-DmD32
 
 188
haltere disc ML-DmD17-c3
 
 160
eye-antennal disc ML-DmD11
 
 139
antennal disc ML-DmD20-c5
 
 191
mixed discs ML-DmD4-c1
 
 281
CNS ML-DmBG1-c1
 
 209
CNS ML-DmBG2-c2
 
 134
tumorous blood cells mbn2
 
 132
ovary fGS/OSS
 
 156
ovary OSC
 
 72
ovary OSS
 
 39
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Moderate expression
Cell Line   Expression Level
Schneider line 2 S2R+
 (296)
Schneider line 2 Sg4
 (151)
embryonic 1182-4H
 (141)
embryonic GM2
 (101)
embryonic Kc167
 (138)
embryonic S1
 (121)
embryonic S3
 (124)
leg disc CME L1
 (146)
wing disc CME-W2
 (160)
wing disc ML-DmD8
 (196)
wing disc ML-DmD9
 (218)
wing disc ML-DmD16-c3
 (144)
wing disc ML-DmD21
 (163)
wing disc ML-DmD32
 (188)
haltere disc ML-DmD17-c3
 (160)
eye-antennal disc ML-DmD11
 (139)
antennal disc ML-DmD20-c5
 (191)
mixed discs ML-DmD4-c1
 (281)
CNS ML-DmBG1-c1
 (209)
CNS ML-DmBG2-c2
 (134)
tumorous blood cells mbn2
 (132)
ovary fGS/OSS
 (156)
ovary OSC
 (72)
ovary OSS
 (39)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Cell Line   Expression Level
Schneider line 2 S2R+
 (296)
Schneider line 2 Sg4
 (151)
embryonic 1182-4H
 (141)
embryonic GM2
 101
embryonic Kc167
 (138)
embryonic S1
 (121)
embryonic S3
 (124)
leg disc CME L1
 (146)
wing disc CME-W2
 (160)
wing disc ML-DmD8
 (196)
wing disc ML-DmD9
 (218)
wing disc ML-DmD16-c3
 (144)
wing disc ML-DmD21
 (163)
wing disc ML-DmD32
 (188)
haltere disc ML-DmD17-c3
 (160)
eye-antennal disc ML-DmD11
 (139)
antennal disc ML-DmD20-c5
 (191)
mixed discs ML-DmD4-c1
 (281)
CNS ML-DmBG1-c1
 (209)
CNS ML-DmBG2-c2
 (134)
tumorous blood cells mbn2
 (132)
ovary fGS/OSS
 (156)
ovary OSC
 
 72
ovary OSS
 
 39
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 296
Schneider line 2 Sg4
 
 151
embryonic 1182-4H
 
 141
embryonic GM2
 
 101
embryonic Kc167
 
 138
embryonic S1
 
 121
embryonic S3
 
 124
leg disc CME L1
 
 146
wing disc CME-W2
 
 160
wing disc ML-DmD8
 
 196
wing disc ML-DmD9
 
 218
wing disc ML-DmD16-c3
 
 144
wing disc ML-DmD21
 
 163
wing disc ML-DmD32
 
 188
haltere disc ML-DmD17-c3
 
 160
eye-antennal disc ML-DmD11
 
 139
antennal disc ML-DmD20-c5
 
 191
mixed discs ML-DmD4-c1
 
 281
CNS ML-DmBG1-c1
 
 209
CNS ML-DmBG2-c2
 
 134
tumorous blood cells mbn2
 
 132
ovary fGS/OSS
 
 156
ovary OSC
 
 72
ovary OSS
 
 39
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Cell Line   Expression Level
Schneider line 2 S2R+
 
 296
Schneider line 2 Sg4
 
 151
embryonic 1182-4H
 
 141
embryonic GM2
 
 101
embryonic Kc167
 
 138
embryonic S1
 
 121
embryonic S3
 
 124
leg disc CME L1
 
 146
wing disc CME-W2
 
 160
wing disc ML-DmD8
 
 196
wing disc ML-DmD9
 
 218
wing disc ML-DmD16-c3
 
 144
wing disc ML-DmD21
 
 163
wing disc ML-DmD32
 
 188
haltere disc ML-DmD17-c3
 
 160
eye-antennal disc ML-DmD11
 
 139
antennal disc ML-DmD20-c5
 
 191
mixed discs ML-DmD4-c1
 
 281
CNS ML-DmBG1-c1
 
 209
CNS ML-DmBG2-c2
 
 134
tumorous blood cells mbn2
 
 132
ovary fGS/OSS
 
 156
ovary OSC
 
 72
ovary OSS
 
 39
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Moderate expression
Cell Line   Expression Level
Schneider line 2 S2R+
 (296)
Schneider line 2 Sg4
 (151)
embryonic 1182-4H
 (141)
embryonic GM2
 (101)
embryonic Kc167
 (138)
embryonic S1
 (121)
embryonic S3
 (124)
leg disc CME L1
 (146)
wing disc CME-W2
 (160)
wing disc ML-DmD8
 (196)
wing disc ML-DmD9
 (218)
wing disc ML-DmD16-c3
 (144)
wing disc ML-DmD21
 (163)
wing disc ML-DmD32
 (188)
haltere disc ML-DmD17-c3
 (160)
eye-antennal disc ML-DmD11
 (139)
antennal disc ML-DmD20-c5
 (191)
mixed discs ML-DmD4-c1
 (281)
CNS ML-DmBG1-c1
 (209)
CNS ML-DmBG2-c2
 (134)
tumorous blood cells mbn2
 (132)
ovary fGS/OSS
 (156)
ovary OSC
 (72)
ovary OSS
 (39)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Cell Line   Expression Level
Schneider line 2 S2R+
 (296)
Schneider line 2 Sg4
 (151)
embryonic 1182-4H
 141
embryonic GM2
 101
embryonic Kc167
 138
embryonic S1
 121
embryonic S3
 124
leg disc CME L1
 (146)
wing disc CME-W2
 (160)
wing disc ML-DmD8
 (196)
wing disc ML-DmD9
 (218)
wing disc ML-DmD16-c3
 (144)
wing disc ML-DmD21
 (163)
wing disc ML-DmD32
 (188)
haltere disc ML-DmD17-c3
 (160)
eye-antennal disc ML-DmD11
 139
antennal disc ML-DmD20-c5
 (191)
mixed discs ML-DmD4-c1
 (281)
CNS ML-DmBG1-c1
 (209)
CNS ML-DmBG2-c2
 134
tumorous blood cells mbn2
 132
ovary fGS/OSS
 (156)
ovary OSC
 
 72
ovary OSS
 
 39
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 296
Schneider line 2 Sg4
 
 151
embryonic 1182-4H
 
 141
embryonic GM2
 
 101
embryonic Kc167
 
 138
embryonic S1
 
 121
embryonic S3
 
 124
leg disc CME L1
 
 146
wing disc CME-W2
 
 160
wing disc ML-DmD8
 
 196
wing disc ML-DmD9
 
 218
wing disc ML-DmD16-c3
 
 144
wing disc ML-DmD21
 
 163
wing disc ML-DmD32
 
 188
haltere disc ML-DmD17-c3
 
 160
eye-antennal disc ML-DmD11
 
 139
antennal disc ML-DmD20-c5
 
 191
mixed discs ML-DmD4-c1
 
 281
CNS ML-DmBG1-c1
 
 209
CNS ML-DmBG2-c2
 
 134
tumorous blood cells mbn2
 
 132
ovary fGS/OSS
 
 156
ovary OSC
 
 72
ovary OSS
 
 39
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Cell Line   Expression Level
Schneider line 2 S2R+
 
 
Schneider line 2 Sg4
 
 
embryonic 1182-4H
 
 
embryonic GM2
 
 
embryonic Kc167
 
 
embryonic S1
 
 
embryonic S3
 
 
leg disc CME L1
 
 
wing disc CME-W2
 
 
wing disc ML-DmD8
 
 
wing disc ML-DmD9
 
 
wing disc ML-DmD16-c3
 
 
wing disc ML-DmD21
 
 
wing disc ML-DmD32
 
 
haltere disc ML-DmD17-c3
 
 
eye-antennal disc ML-DmD11
 
 
antennal disc ML-DmD20-c5
 
 
mixed discs ML-DmD4-c1
 
 
CNS ML-DmBG1-c1
 
 
CNS ML-DmBG2-c2
 
 
tumorous blood cells mbn2
 
 
ovary fGS/OSS
 
 
ovary OSC
 
 
ovary OSS
 
 

hide modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment   Expression Level
extended cold, 4-day adult
 
 291
cold shock, 4-day adult
 
 178
heat shock, 4-day adult
 
 897
Cadmium 50 mM 6 hrs, larvae L3
 
 1206
Cadmium 50 mM 12 hrs, larvae L3
 
 853
Cadmium 50 mM 48 hrs, 4-day adult
 
 792
Cadmium 100 mM 48 hrs, 4-day adult
 
 303
Copper 0.5 mM 12 hrs, larvae L3
 
 968
Copper 15 mM 48 hrs, 4-day adult
 
 119
Zinc 5 mM 12 hrs, larvae L3
 
 581
Zinc 4.5 mM 48 hrs, 4-day adult
 
 196
Ethanol 2.5% 3 hrs, larvae L3
 
 632
Ethanol 5% 3 hrs, larvae L3
 
 912
Ethanol 10% 3 hrs, larvae L3
 
 1490
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 1026
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 256
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 261
Paraquat 5 mM 48 hrs, 4-day adult
 
 551
Paraquat 10 mM 48 hrs, 4-day adult
 
 654
Rotenone 2 μg 12 hrs, larvae L3
 
 1195
Rotenone 8 μg 12 hrs, larvae L3
 
 1496
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Linear, scaled to Moderate expression
Treatment   Expression Level
extended cold, 4-day adult
 (291)
cold shock, 4-day adult
 (178)
heat shock, 4-day adult
 (897)
Cadmium 50 mM 6 hrs, larvae L3
 (1206)
Cadmium 50 mM 12 hrs, larvae L3
 (853)
Cadmium 50 mM 48 hrs, 4-day adult
 (792)
Cadmium 100 mM 48 hrs, 4-day adult
 (303)
Copper 0.5 mM 12 hrs, larvae L3
 (968)
Copper 15 mM 48 hrs, 4-day adult
 (119)
Zinc 5 mM 12 hrs, larvae L3
 (581)
Zinc 4.5 mM 48 hrs, 4-day adult
 (196)
Ethanol 2.5% 3 hrs, larvae L3
 (632)
Ethanol 5% 3 hrs, larvae L3
 (912)
Ethanol 10% 3 hrs, larvae L3
 (1490)
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 (1026)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 (256)
Caffeine 25 mg/ml 48 hrs, 4-day adult
 (261)
Paraquat 5 mM 48 hrs, 4-day adult
 (551)
Paraquat 10 mM 48 hrs, 4-day adult
 (654)
Rotenone 2 μg 12 hrs, larvae L3
 (1195)
Rotenone 8 μg 12 hrs, larvae L3
 (1496)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Treatment   Expression Level
extended cold, 4-day adult
 (291)
cold shock, 4-day adult
 (178)
heat shock, 4-day adult
 (897)
Cadmium 50 mM 6 hrs, larvae L3
 (1206)
Cadmium 50 mM 12 hrs, larvae L3
 (853)
Cadmium 50 mM 48 hrs, 4-day adult
 (792)
Cadmium 100 mM 48 hrs, 4-day adult
 (303)
Copper 0.5 mM 12 hrs, larvae L3
 (968)
Copper 15 mM 48 hrs, 4-day adult
 (119)
Zinc 5 mM 12 hrs, larvae L3
 (581)
Zinc 4.5 mM 48 hrs, 4-day adult
 (196)
Ethanol 2.5% 3 hrs, larvae L3
 (632)
Ethanol 5% 3 hrs, larvae L3
 (912)
Ethanol 10% 3 hrs, larvae L3
 (1490)
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 (1026)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 (256)
Caffeine 25 mg/ml 48 hrs, 4-day adult
 (261)
Paraquat 5 mM 48 hrs, 4-day adult
 (551)
Paraquat 10 mM 48 hrs, 4-day adult
 (654)
Rotenone 2 μg 12 hrs, larvae L3
 (1195)
Rotenone 8 μg 12 hrs, larvae L3
 (1496)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Treatment   Expression Level
extended cold, 4-day adult
 
 291
cold shock, 4-day adult
 
 178
heat shock, 4-day adult
 
 897
Cadmium 50 mM 6 hrs, larvae L3
 
 1206
Cadmium 50 mM 12 hrs, larvae L3
 
 853
Cadmium 50 mM 48 hrs, 4-day adult
 
 792
Cadmium 100 mM 48 hrs, 4-day adult
 
 303
Copper 0.5 mM 12 hrs, larvae L3
 
 968
Copper 15 mM 48 hrs, 4-day adult
 
 119
Zinc 5 mM 12 hrs, larvae L3
 
 581
Zinc 4.5 mM 48 hrs, 4-day adult
 
 196
Ethanol 2.5% 3 hrs, larvae L3
 
 632
Ethanol 5% 3 hrs, larvae L3
 
 912
Ethanol 10% 3 hrs, larvae L3
 
 1490
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 1026
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 256
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 261
Paraquat 5 mM 48 hrs, 4-day adult
 
 551
Paraquat 10 mM 48 hrs, 4-day adult
 
 654
Rotenone 2 μg 12 hrs, larvae L3
 
 1195
Rotenone 8 μg 12 hrs, larvae L3
 
 1496
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Treatment   Expression Level
extended cold, 4-day adult
 
 291
cold shock, 4-day adult
 
 178
heat shock, 4-day adult
 
 897
Cadmium 50 mM 6 hrs, larvae L3
 
 1206
Cadmium 50 mM 12 hrs, larvae L3
 
 853
Cadmium 50 mM 48 hrs, 4-day adult
 
 792
Cadmium 100 mM 48 hrs, 4-day adult
 
 303
Copper 0.5 mM 12 hrs, larvae L3
 
 968
Copper 15 mM 48 hrs, 4-day adult
 
 119
Zinc 5 mM 12 hrs, larvae L3
 
 581
Zinc 4.5 mM 48 hrs, 4-day adult
 
 196
Ethanol 2.5% 3 hrs, larvae L3
 
 632
Ethanol 5% 3 hrs, larvae L3
 
 912
Ethanol 10% 3 hrs, larvae L3
 
 1490
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 1026
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 256
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 261
Paraquat 5 mM 48 hrs, 4-day adult
 
 551
Paraquat 10 mM 48 hrs, 4-day adult
 
 654
Rotenone 2 μg 12 hrs, larvae L3
 
 1195
Rotenone 8 μg 12 hrs, larvae L3
 
 1496
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to Moderate expression
Treatment   Expression Level
extended cold, 4-day adult
 (291)
cold shock, 4-day adult
 (178)
heat shock, 4-day adult
 (897)
Cadmium 50 mM 6 hrs, larvae L3
 (1206)
Cadmium 50 mM 12 hrs, larvae L3
 (853)
Cadmium 50 mM 48 hrs, 4-day adult
 (792)
Cadmium 100 mM 48 hrs, 4-day adult
 (303)
Copper 0.5 mM 12 hrs, larvae L3
 (968)
Copper 15 mM 48 hrs, 4-day adult
 (119)
Zinc 5 mM 12 hrs, larvae L3
 (581)
Zinc 4.5 mM 48 hrs, 4-day adult
 (196)
Ethanol 2.5% 3 hrs, larvae L3
 (632)
Ethanol 5% 3 hrs, larvae L3
 (912)
Ethanol 10% 3 hrs, larvae L3
 (1490)
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 (1026)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 (256)
Caffeine 25 mg/ml 48 hrs, 4-day adult
 (261)
Paraquat 5 mM 48 hrs, 4-day adult
 (551)
Paraquat 10 mM 48 hrs, 4-day adult
 (654)
Rotenone 2 μg 12 hrs, larvae L3
 (1195)
Rotenone 8 μg 12 hrs, larvae L3
 (1496)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Treatment   Expression Level
extended cold, 4-day adult
 (291)
cold shock, 4-day adult
 (178)
heat shock, 4-day adult
 (897)
Cadmium 50 mM 6 hrs, larvae L3
 (1206)
Cadmium 50 mM 12 hrs, larvae L3
 (853)
Cadmium 50 mM 48 hrs, 4-day adult
 (792)
Cadmium 100 mM 48 hrs, 4-day adult
 (303)
Copper 0.5 mM 12 hrs, larvae L3
 (968)
Copper 15 mM 48 hrs, 4-day adult
 119
Zinc 5 mM 12 hrs, larvae L3
 (581)
Zinc 4.5 mM 48 hrs, 4-day adult
 (196)
Ethanol 2.5% 3 hrs, larvae L3
 (632)
Ethanol 5% 3 hrs, larvae L3
 (912)
Ethanol 10% 3 hrs, larvae L3
 (1490)
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 (1026)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 (256)
Caffeine 25 mg/ml 48 hrs, 4-day adult
 (261)
Paraquat 5 mM 48 hrs, 4-day adult
 (551)
Paraquat 10 mM 48 hrs, 4-day adult
 (654)
Rotenone 2 μg 12 hrs, larvae L3
 (1195)
Rotenone 8 μg 12 hrs, larvae L3
 (1496)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Treatment   Expression Level
extended cold, 4-day adult
 
 291
cold shock, 4-day adult
 
 178
heat shock, 4-day adult
 
 897
Cadmium 50 mM 6 hrs, larvae L3
 
 1206
Cadmium 50 mM 12 hrs, larvae L3
 
 853
Cadmium 50 mM 48 hrs, 4-day adult
 
 792
Cadmium 100 mM 48 hrs, 4-day adult
 
 303
Copper 0.5 mM 12 hrs, larvae L3
 
 968
Copper 15 mM 48 hrs, 4-day adult
 
 119
Zinc 5 mM 12 hrs, larvae L3
 
 581
Zinc 4.5 mM 48 hrs, 4-day adult
 
 196
Ethanol 2.5% 3 hrs, larvae L3
 
 632
Ethanol 5% 3 hrs, larvae L3
 
 912
Ethanol 10% 3 hrs, larvae L3
 
 1490
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 1026
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 256
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 261
Paraquat 5 mM 48 hrs, 4-day adult
 
 551
Paraquat 10 mM 48 hrs, 4-day adult
 
 654
Rotenone 2 μg 12 hrs, larvae L3
 
 1195
Rotenone 8 μg 12 hrs, larvae L3
 
 1496
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Treatment   Expression Level
extended cold, 4-day adult
 
 
cold shock, 4-day adult
 
 
heat shock, 4-day adult
 
 
Cadmium 50 mM 6 hrs, larvae L3
 
 
Cadmium 50 mM 12 hrs, larvae L3
 
 
Cadmium 50 mM 48 hrs, 4-day adult
 
 
Cadmium 100 mM 48 hrs, 4-day adult
 
 
Copper 0.5 mM 12 hrs, larvae L3
 
 
Copper 15 mM 48 hrs, 4-day adult
 
 
Zinc 5 mM 12 hrs, larvae L3
 
 
Zinc 4.5 mM 48 hrs, 4-day adult
 
 
Ethanol 2.5% 3 hrs, larvae L3
 
 
Ethanol 5% 3 hrs, larvae L3
 
 
Ethanol 10% 3 hrs, larvae L3
 
 
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 
Paraquat 5 mM 48 hrs, 4-day adult
 
 
Paraquat 10 mM 48 hrs, 4-day adult
 
 
Rotenone 2 μg 12 hrs, larvae L3
 
 
Rotenone 8 μg 12 hrs, larvae L3
 
 

hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyExpress - Embryonic expression images (BDGP data)
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Phenotype manifest in
Allele
hide Classical Alleles ( 3 )
For All Classical Alleles Show

Allele of Gapdh1ClassMutagenStocksKnown lesion
Gapdh1G22851 --
Gapdh1825T0 --
Gapdh1850T0 --
hide Alleles Carried on Transgenic Constructs ( 8 )
For All Alleles Carried on Transgenic Constructs Show

Allele of Gapdh1ClassMutagenStocksKnown lesion
Gapdh1GD74672 Yes
Gapdh1GL010941 Yes
Gapdh1KK1083771 Yes
Gapdh1-3.00 Yes
Gapdh1-4.70 Yes
Gapdh1-8.50 Yes
Gapdh1Gapdh2.cSa0 Yes
Gapdh1GD173220 Yes
hide Aneuploid Aberrations
Disrupted in
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
characterization construct
Insertions
Type of insertions
Name
Expression data
insertion of enhancer trap
insertion of mobile activating element
hide Gene Ontology: Function, Process & Cellular Component ( 9 unique terms )
hide Terms Based on Experimental Evidence ( 5 terms )
Molecular Function
CV term
References
Biological Process
CV term
References
inferred from expression pattern
Cellular Component
CV term
References
inferred from direct assay
inferred from direct assay
inferred from direct assay
hide Terms Based on Predictions or Assertions ( 6 terms )
Molecular Function
CV term
References
inferred from electronic annotation with InterPro:IPR006424
inferred from electronic annotation with InterPro:IPR006424
Biological Process
CV term
References
non-traceable author statement
Cellular Component
CV term
References
non-traceable author statement
hide Sequence Ontology: Class of Gene
hide Interactions & Pathways
hide Summary of Physical Interactions
protein-protein
Interacting group
Assay
References
experimental knowledge based
experimental knowledge based
experimental knowledge based
experimental knowledge based
experimental knowledge based
experimental knowledge based
experimental knowledge based
experimental knowledge based
experimental knowledge based
experimental knowledge based
experimental knowledge based
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
Gapdh1 allele
Gene
References
hide External Data
Linkouts
BioGRID - A database of protein and genetic interactions
DPiM - DPiM, Drosophila Protein interaction Map
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
hide OrthoDB Orthologs (149) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
Drosophila inclusive ortholog search
Dipteran inclusive ortholog search
Insect inclusive ortholog search
Arthropod inclusive ortholog search
Metazoa inclusive ortholog search
hideOrthologs in Drosophila Species (EOG6GJ086)
Organism
Common Name
Gene
AAA Syntenic Ortholog
Multiple Dmel Genes in this Orthologous Group
Drosophila melanogaster
fruit fly 
 
 
Drosophila melanogaster
fruit fly 
 
 
Drosophila sechellia
 
 
Y
Drosophila sechellia
 
 
Y
Drosophila erecta
 
Y
Y
Drosophila erecta
 
 
Y
Drosophila yakuba
 
Y
Y
Drosophila yakuba
 
 
Y
Drosophila ananassae
 
 
Y
Drosophila pseudoobscura pseudoobscura
 
 
Y
Drosophila persimilis
 
 
Y
Drosophila willistoni
 
 
Y
Drosophila virilis
 
 
Y
Drosophila mojavensis
 
 
Y
Drosophila grimshawi
 
 
Y
hideOrthologs in non-Drosophila Dipterans (EOG67SSPK)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Aedes aegypti
Yellow fever mosquito 
Y
Anopheles gambiae
Malaria mosquito 
Y
Culex quinquefasciatus
Southern house mosquito 
Y
hideOrthologs in non-Dipteran Insects (EOG670SD2)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Apis mellifera
Western honey bee 
Amel\Gapdh
Y
Nasonia vitripennis
Parasitic wasp 
Nvit\Nasvi2EG007624
Y
Acromyrmex echinatior
Panamanian leafcutter ant 
Aech\AECH16788
Y
Atta cephalotes
Leafcutter ant 
Acep\ACEP17085
Y
Camponotus floridanus
Florida carpenter ant 
Cflo\CFLO18811
Y
Harpegnathos saltator
Jerdons jumping ant 
Hsal\HSAL18465
Y
Linepithema humile
Argentine ant 
Lhum\LH21746
Y
Pogonomyrmex barbatus
Red harvester ant 
Pbar\PB21096
Y
Solenopsis invicta
Red fire ant 
Sinv\SINV11437
Y
Acyrthosiphon pisum
Pea aphid 
Y
Acyrthosiphon pisum
Pea aphid 
Y
Acyrthosiphon pisum
Pea aphid 
Y
Acyrthosiphon pisum
Pea aphid 
Y
Bombyx mori
Silkmoth 
Y
Pediculus humanus
Human body louse 
Y
Tribolium castaneum
Red flour beetle 
Y
hideOrthologs in non-Insect Arthropods (EOG66M91C)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Daphnia pulex
Water flea 
Y
Ixodes scapularis
Deer tick 
Y
hideOrthologs in non-Arthropod Metazoa (EOG6BGNPV)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Caenorhabditis elegans
Nematode 
Y
Caenorhabditis elegans
Nematode 
Y
Caenorhabditis elegans
Nematode 
Y
Caenorhabditis elegans
Nematode 
Y
Strongylocentrotus purpuratus
Purple sea urchin 
Y
Strongylocentrotus purpuratus
Purple sea urchin 
Y
Danio rerio
Zebrafish 
Y
Danio rerio
Zebrafish 
Y
Xenopus tropicalis
Western clawed frog 
Y
Gallus gallus
Domestic chicken 
Y
Gallus gallus
Domestic chicken 
Y
Mus musculus
House mouse 
Y
Mus musculus
House mouse 
Y
Mus musculus
House mouse 
Y
Mus musculus
House mouse 
Y
Mus musculus
House mouse 
Y
Mus musculus
House mouse 
Y
Mus musculus
House mouse 
Y
Mus musculus
House mouse 
Y
Mus musculus
House mouse 
Y
Mus musculus
House mouse 
Y
Mus musculus
House mouse 
Y
Mus musculus
House mouse 
Y
Mus musculus
House mouse 
Y
Mus musculus
House mouse 
Y
Mus musculus
House mouse 
Y
Mus musculus
House mouse 
Y
Mus musculus
House mouse 
Y
Mus musculus
House mouse 
Y
Mus musculus
House mouse 
Y
Mus musculus
House mouse 
Y
Mus musculus
House mouse 
Y
Mus musculus
House mouse 
Y
Mus musculus
House mouse 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Homo sapiens
Human 
Y
Homo sapiens
Human 
Y
hide Human Orthologs (2)
Gene
OMIM
HGNC
hideAAA Orthologs (2) based on analysis using Dmel annotation version 4.3
Organism
Gene
Drosophila erecta
Drosophila yakuba
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 5 )
Bloomington
VDRC
hide Genomic Clones ( 1 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 309 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
hide RNAi & Array Information
Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
hide Antibody Information
hide Other Information
hide Discoverer
hide Etymology
hide Identification
hide Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
The Gapdh1 gene may have been derived from the Gapdh2 gene by retroposition.
hide Other Comments
Identified with: GH12586 <up>FlyBase curator comment: EST subsequently found to be chimeric</up>.
At least a substantial fraction of three glycolytic enzymes of flight muscle cells are found colocalised at the Z-discs and M-lines, glycolytic enzyme colocalisation is interdependent. Localisation of Gapdh1, Gapdh2 and Ald at the Z-discs and M-lines requires the presence of at least Gpdh at the Z-discs and M-lines.
EST GH12586 is chimeric; the 5' portion (AI134984) corresponds to part of CG4461, the 3' portion (BG632702) corresponds to part of Gapdh1.
The synergistic effects of the Adh locus, or a tightly linked locus, on the quantities of the Mdh1, Gpdh, Pgm, Idh, Men and Gapdh1 gene products in D.melanogaster derived from an African population has been determined.
The melanogaster and takahashi subgroups of the melanogaster group have small and large subunits of Gapdh, while another 28 species (in 15 subgroups) studied were found to have only either the large or the small subunit of Gapdh.
Gapdh1 and Gapdh2 RNA expression has been studied.
One of two genes (Gapdh1 and Gapdh2) that code for the enzyme glyceraldehyde-3-phosphate dehydrogenase (GAPDH). These genes are expressed in almost all cells, especially those that undergo a high rate of glycolysis.
 
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
EPD - Eukarytoic Promoter Database, an annotated collection of POL II promoters
InterPro domains - A database of protein families, domains, and functional sites
BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
Linkouts
BioGRID - A database of protein and genetic interactions
DPiM - DPiM, Drosophila Protein interaction Map
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
hide Synonyms & Secondary IDs ( 25 )
Reported As
Symbol Synonym
BEST:GH12586
 
Gapdh43E
 
Name Synonym
G3-P dehydrogenase
Glyceraldehyde 3 phosphate dehydrogenase
Glyceraldehyde-3-phosphate dehydrogenase1
Glyceraldehyde 3 phosphate dehydrogenase 1
glyceraldehyde 3 phosphate dehydrogenase1
Secondary FlyBase IDs
  • FBgn0043822
hide References ( 88 )
Generate a list of
List References by type
hide Recent research papers ( 8 )
Zala et al., 2013, Cell 152(3): 479--491
Vesicular glycolysis provides on-board energy for fast axonal transport. [FBrf0220679]
Duboff et al., 2012, Neuron 75(4): 618--632
Tau Promotes Neurodegeneration via DRP1 Mislocalization In Vivo. [FBrf0219271]
Peralta et al., 2012, J. Biol. Chem. 287(29): 24174--24185
Coiled Coil Domain-containing Protein 56 (CCDC56) Is a Novel Mitochondrial Protein Essential for Cytochrome c Oxidase Function. [FBrf0218928]
Thomas et al., 2012, PLoS ONE 7(7): e40276
A Versatile Method for Cell-Specific Profiling of Translated mRNAs in Drosophila. [FBrf0218903]
Vesala et al., 2012, Insect Mol. Biol. 21(1): 107--118
Cold tolerance and cold-induced modulation of gene expression in two Drosophila virilis group species with different distributions. [FBrf0217233]
Matta et al., 2011, Dev. Genes Evol. 221(1): 49--57
Getting real with real-time qPCR: a case study of reference gene selection for morphological variation in Drosophila melanogaster wings. [FBrf0213646]
O'Keefe et al., 2011, Hum. Mol. Genet. 20(3): 497--509
Drosophila orthologue of WWOX, the chromosomal fragile site FRA16D tumour suppressor gene, functions in aerobic metabolism and regulates reactive oxygen species. [FBrf0212691]
Sun et al., 2011, PLoS ONE 6(4): e18215
Systems-scale analysis reveals pathways involved in cellular response to methamphetamine. [FBrf0213560]
hide Recent reviews (0)
All reviews listed in FlyBase were published before 2011