General Information Symbol Dmel\ Gapdh1Species D. melanogaster Name Glyceraldehyde 3 phosphate dehydrogenase 1 Annotation symbol CG12055 Feature type protein_coding_gene FlyBase ID FBgn0001091 Gene Model Status Current Stock availability 5 publicly
available Also Known As Gapdh, GAPDH-1, GADPH Genomic Location Chromosome (arm) 2R Recombination map Cytogenetic map 43E17-43E17 Sequence location 2R:3,679,406..3,680,885 [-]
Genomic Maps
Summary Information Automatically generated summary
See sections below for more information The gene
Glyceraldehyde 3 phosphate dehydrogenase 1 is referred to in FlyBase by the symbol
Dmel\Gapdh1 (CG12055, FBgn0001091). It is a protein_coding_gene from
Drosophila melanogaster . There is experimental evidence that it has the
molecular function : glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity. There is experimental evidence that it is involved in the
biological process : glycolysis.
11 alleles are reported . No phenotypic data is available. It has
2 annotated transcripts and
2 annotated polypeptides .
Protein features are: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, active site; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; Glyceraldehyde-3-phosphate dehydrogenase, type I; Glyceraldehyde/Erythrose phosphate dehydrogenase family; NAD(P)-binding domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of moderate expression. Peak expression observed at stages throughout the larval period, during late pupal stages, in stages of adults of both sexes. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult testis. Comments on Affy2 ProbeSet: ProbeSet 1640907_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of Gapdh1. Gene sequence location is
2R:3679406..3680885 .
User Contributed Data
Phenotypic Description from the Red Book (Lindsley
& Zimm 1992) Gene/Allele symbols may differ
from current usage Gapdh1: Glyceraldehyde dehydrogenase 1
One of two genes (Gapdh1 and Gapdh2) that code for
the enzyme glyceraldehyde-3-phosphate dehydrogenase [G3PD
(EC.1.2.12)]. These genes are expressed in almost all cells,
especially those that undergo a high rate of glycolysis.
Recent Updates
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It currently only tracks new links between this FlyBase report and other
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FB2013_03
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Detailed Mapping Data
FlyBase Computed Cytological Location
Experimentally Determined Cytological Location
43E-43F
(determined by in situ hybridisation)
43E-43E
(determined by in situ hybridisation)
Experimentally Determined Recombination Data
Location Left of (cM) Right of (cM) Notes Gene Model & Products Comments on Gene
Model Gene model reviewed during 5.49
Transcript Data Annotated Transcripts Additional Transcript Data
& Comments Reported size (kB) Comments External Data Crossreferences
Polypeptide Data Annotated
Polypeptides Additional Polypeptide
Data & Comments Reported size (kDa) Comments External Data Linkouts Crossreferences
domains - A database of protein families, domains, and functional sites
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank UniProtKB/Swiss-Prot UniProtKB/TrEMBL Mapped Features Mapped Features have been reorganized, please
see this article for details. Additional mapped features and mutations can
be found on GBrowse or related reports. External Data Linkouts Crossreferences
- Eukarytoic Promoter Database, an annotated collection of POL II promoters
Expression Data Transcript ExpressionComment: maternally deposited
Comment: reported as muscle system primordium
Comment: reported as muscle system primordium
Additional Descriptive Data
Marker for Subcellular Localization CV Term Polypeptide Expression
Additional Descriptive Data
Glycolytic enzymes, including
Gpdh protein are localized to M bands and Z discs, as visualized in the isolated myofibrils of flight muscles, where immunoreactivity appears as alternating bright and less-intense bands.
Marker for Subcellular Localization (GO Cellular Component) inferred from direct assay
inferred from direct assay
inferred from direct assay
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference
FlyAtlas Anatomy Microarray
Linear, scaled to maximum expression level
Tissue
Expression Level
Larval Central Nervous System
1928.575
Larval Midgut
1274.4
Larval Hindgut
2099.9
Larval Malpighian Tubules
2307.1
Larval Fat Body
4619.8
Larval Salivary Gland
2743.7
Larval Trachea
1928.575
Larval Carcass
4431.875
Adult Head
2264.6
Adult Eye
2282.225
Adult Brain
1692.2
Adult Thoracic-Abdominal Ganglion
2128.8
Adult Crop
3060.6
Adult Midgut
1051.1
Adult Hindgut
2996
Adult Malpighian Tubules
2193.5
Adult Fat Body
3201.4
Adult Salivary Gland
6857.8
Adult Heart
3309.3
Adult VirginFemale Spermatheca
3359
Adult InseminatedFemale Spermatheca
3158.3
Adult Ovary
1673.8
Adult Testis
189.3
Adult Male Accessory Gland
1046.5
Adult Carcass
4892.2
Expression Level Scale
None
Low
Moderate
High
Very high
Linear, scaled to Moderate expression
Tissue
Expression Level
Larval Central Nervous System
(1928.575)
Larval Midgut
(1274.4)
Larval Hindgut
(2099.9)
Larval Malpighian Tubules
(2307.1)
Larval Fat Body
(4619.8)
Larval Salivary Gland
(2743.7)
Larval Trachea
(1928.575)
Larval Carcass
(4431.875)
Adult Head
(2264.6)
Adult Eye
(2282.225)
Adult Brain
(1692.2)
Adult Thoracic-Abdominal Ganglion
(2128.8)
Adult Crop
(3060.6)
Adult Midgut
(1051.1)
Adult Hindgut
(2996)
Adult Malpighian Tubules
(2193.5)
Adult Fat Body
(3201.4)
Adult Salivary Gland
(6857.8)
Adult Heart
(3309.3)
Adult VirginFemale Spermatheca
(3359)
Adult InseminatedFemale Spermatheca
(3158.3)
Adult Ovary
(1673.8)
Adult Testis
189.3
Adult Male Accessory Gland
(1046.5)
Adult Carcass
(4892.2)
Expression Level Scale
None
Low
Moderate
High
Linear, scaled to High level expression
Tissue
Expression Level
Larval Central Nervous System
(1928.575)
Larval Midgut
(1274.4)
Larval Hindgut
(2099.9)
Larval Malpighian Tubules
(2307.1)
Larval Fat Body
(4619.8)
Larval Salivary Gland
(2743.7)
Larval Trachea
(1928.575)
Larval Carcass
(4431.875)
Adult Head
(2264.6)
Adult Eye
(2282.225)
Adult Brain
(1692.2)
Adult Thoracic-Abdominal Ganglion
(2128.8)
Adult Crop
(3060.6)
Adult Midgut
1051.1
Adult Hindgut
(2996)
Adult Malpighian Tubules
(2193.5)
Adult Fat Body
(3201.4)
Adult Salivary Gland
(6857.8)
Adult Heart
(3309.3)
Adult VirginFemale Spermatheca
(3359)
Adult InseminatedFemale Spermatheca
(3158.3)
Adult Ovary
(1673.8)
Adult Testis
189.3
Adult Male Accessory Gland
1046.5
Adult Carcass
(4892.2)
Expression Level Scale
None
Low
Moderate
High
Very high
Linear, scaled to Very high expression
Tissue
Expression Level
Larval Central Nervous System
1928.575
Larval Midgut
1274.4
Larval Hindgut
2099.9
Larval Malpighian Tubules
2307.1
Larval Fat Body
4619.8
Larval Salivary Gland
2743.7
Larval Trachea
1928.575
Larval Carcass
4431.875
Adult Head
2264.6
Adult Eye
2282.225
Adult Brain
1692.2
Adult Thoracic-Abdominal Ganglion
2128.8
Adult Crop
3060.6
Adult Midgut
1051.1
Adult Hindgut
2996
Adult Malpighian Tubules
2193.5
Adult Fat Body
3201.4
Adult Salivary Gland
6857.8
Adult Heart
3309.3
Adult VirginFemale Spermatheca
3359
Adult InseminatedFemale Spermatheca
3158.3
Adult Ovary
1673.8
Adult Testis
189.3
Adult Male Accessory Gland
1046.5
Adult Carcass
4892.2
Expression Level Scale
Very high
log, scaled to maximum expression level
Tissue
Expression Level
Larval Central Nervous System
1928.575
Larval Midgut
1274.4
Larval Hindgut
2099.9
Larval Malpighian Tubules
2307.1
Larval Fat Body
4619.8
Larval Salivary Gland
2743.7
Larval Trachea
1928.575
Larval Carcass
4431.875
Adult Head
2264.6
Adult Eye
2282.225
Adult Brain
1692.2
Adult Thoracic-Abdominal Ganglion
2128.8
Adult Crop
3060.6
Adult Midgut
1051.1
Adult Hindgut
2996
Adult Malpighian Tubules
2193.5
Adult Fat Body
3201.4
Adult Salivary Gland
6857.8
Adult Heart
3309.3
Adult VirginFemale Spermatheca
3359
Adult InseminatedFemale Spermatheca
3158.3
Adult Ovary
1673.8
Adult Testis
189.3
Adult Male Accessory Gland
1046.5
Adult Carcass
4892.2
Expression Level Scale
None
Low
Moderate
High
Very high
log, scaled to Moderate expression
Tissue
Expression Level
Larval Central Nervous System
(1928.575)
Larval Midgut
(1274.4)
Larval Hindgut
(2099.9)
Larval Malpighian Tubules
(2307.1)
Larval Fat Body
(4619.8)
Larval Salivary Gland
(2743.7)
Larval Trachea
(1928.575)
Larval Carcass
(4431.875)
Adult Head
(2264.6)
Adult Eye
(2282.225)
Adult Brain
(1692.2)
Adult Thoracic-Abdominal Ganglion
(2128.8)
Adult Crop
(3060.6)
Adult Midgut
(1051.1)
Adult Hindgut
(2996)
Adult Malpighian Tubules
(2193.5)
Adult Fat Body
(3201.4)
Adult Salivary Gland
(6857.8)
Adult Heart
(3309.3)
Adult VirginFemale Spermatheca
(3359)
Adult InseminatedFemale Spermatheca
(3158.3)
Adult Ovary
(1673.8)
Adult Testis
189.3
Adult Male Accessory Gland
(1046.5)
Adult Carcass
(4892.2)
Expression Level Scale
None
Low
Moderate
High
log, scaled to High level expression
Tissue
Expression Level
Larval Central Nervous System
(1928.575)
Larval Midgut
1274.4
Larval Hindgut
(2099.9)
Larval Malpighian Tubules
(2307.1)
Larval Fat Body
(4619.8)
Larval Salivary Gland
(2743.7)
Larval Trachea
(1928.575)
Larval Carcass
(4431.875)
Adult Head
(2264.6)
Adult Eye
(2282.225)
Adult Brain
1692.2
Adult Thoracic-Abdominal Ganglion
(2128.8)
Adult Crop
(3060.6)
Adult Midgut
1051.1
Adult Hindgut
(2996)
Adult Malpighian Tubules
(2193.5)
Adult Fat Body
(3201.4)
Adult Salivary Gland
(6857.8)
Adult Heart
(3309.3)
Adult VirginFemale Spermatheca
(3359)
Adult InseminatedFemale Spermatheca
(3158.3)
Adult Ovary
1673.8
Adult Testis
189.3
Adult Male Accessory Gland
1046.5
Adult Carcass
(4892.2)
Expression Level Scale
None
Low
Moderate
High
Very high
log, scaled to Very high expression
Tissue
Expression Level
Larval Central Nervous System
1928.575
Larval Midgut
1274.4
Larval Hindgut
2099.9
Larval Malpighian Tubules
2307.1
Larval Fat Body
4619.8
Larval Salivary Gland
2743.7
Larval Trachea
1928.575
Larval Carcass
4431.875
Adult Head
2264.6
Adult Eye
2282.225
Adult Brain
1692.2
Adult Thoracic-Abdominal Ganglion
2128.8
Adult Crop
3060.6
Adult Midgut
1051.1
Adult Hindgut
2996
Adult Malpighian Tubules
2193.5
Adult Fat Body
3201.4
Adult Salivary Gland
6857.8
Adult Heart
3309.3
Adult VirginFemale Spermatheca
3359
Adult InseminatedFemale Spermatheca
3158.3
Adult Ovary
1673.8
Adult Testis
189.3
Adult Male Accessory Gland
1046.5
Adult Carcass
4892.2
Expression Level Scale
None
Low
Moderate
High
Very high
Heatmap
Tissue
Expression Level
Larval Central Nervous System
Larval Midgut
Larval Hindgut
Larval Malpighian Tubules
Larval Fat Body
Larval Salivary Gland
Larval Trachea
Larval Carcass
Adult Head
Adult Eye
Adult Brain
Adult Thoracic-Abdominal Ganglion
Adult Crop
Adult Midgut
Adult Hindgut
Adult Malpighian Tubules
Adult Fat Body
Adult Salivary Gland
Adult Heart
Adult VirginFemale Spermatheca
Adult InseminatedFemale Spermatheca
Adult Ovary
Adult Testis
Adult Male Accessory Gland
Adult Carcass
FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level
Tissue
Adult Expression Level
NA
Head
2264.6
NA
Eye
2282.225
NA
Brain
1692.2
1928.575
Central Nervous System
NA
NA
Thoracic-Abdominal Ganglion
2128.8
NA
Crop
3060.6
1274.4
Midgut
1051.1
2099.9
Hindgut
2996
2307.1
Malpighian Tubules
2193.5
4619.8
Fat Body
3201.4
2743.7
Salivary Gland
6857.8
NA
Heart
3309.3
1928.575
Trachea
NA
NA
VirginFemale Spermatheca
3359
NA
InseminatedFemale Spermatheca
3158.3
NA
Ovary
1673.8
NA
Testis
189.3
NA
Male Accessory Gland
1046.5
4431.875
Carcass
4892.2
modENCODE Anatomy RNA-Seq
Linear, scaled to maximum expression level
Tissue
Expression Level
imaginal disc, larvae L3 wandering
111
central nervous system, larvae L3
97
central nervous system, pupae P8
64
head, virgin 1-day female
520
head, virgin 4-day female
249
head, virgin 20-day female
220
head, mated 1-day female
383
head, mated 4-day female
174
head, mated 20-day female
189
head, mated 1-day male
591
head, mated 4-day male
268
head, mated 20-day male
265
salivary gland, larvae L3 wandering
31
salivary gland, white prepupae
47
digestive system, larvae L3 wandering
73
digestive system, 1-day adult
233
digestive system, 4-day adult
122
digestive system, 20-day adult
141
fat body, larvae L3 wandering
407
fat body, white prepupae
187
fat body, pupae P8
104
carcass, larvae L3 wandering
235
carcass, 1-day adult
1717
carcass, 4-day adult
614
carcass, 20-day adult
235
ovary, virgin 4-day female
235
ovary, mated 4-day female
204
testis, mated 4-day male
55
accessory gland, mated 4-day male
91
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
Linear, scaled to Moderate expression
Tissue
Expression Level
imaginal disc, larvae L3 wandering
(111)
central nervous system, larvae L3
(97)
central nervous system, pupae P8
(64)
head, virgin 1-day female
(520)
head, virgin 4-day female
(249)
head, virgin 20-day female
(220)
head, mated 1-day female
(383)
head, mated 4-day female
(174)
head, mated 20-day female
(189)
head, mated 1-day male
(591)
head, mated 4-day male
(268)
head, mated 20-day male
(265)
salivary gland, larvae L3 wandering
(31)
salivary gland, white prepupae
(47)
digestive system, larvae L3 wandering
(73)
digestive system, 1-day adult
(233)
digestive system, 4-day adult
(122)
digestive system, 20-day adult
(141)
fat body, larvae L3 wandering
(407)
fat body, white prepupae
(187)
fat body, pupae P8
(104)
carcass, larvae L3 wandering
(235)
carcass, 1-day adult
(1717)
carcass, 4-day adult
(614)
carcass, 20-day adult
(235)
ovary, virgin 4-day female
(235)
ovary, mated 4-day female
(204)
testis, mated 4-day male
(55)
accessory gland, mated 4-day male
(91)
Expression Level Scale
Very low
Low
Moderate
Moderately high
Linear, scaled to High expression
Tissue
Expression Level
imaginal disc, larvae L3 wandering
(111)
central nervous system, larvae L3
97
central nervous system, pupae P8
64
head, virgin 1-day female
(520)
head, virgin 4-day female
(249)
head, virgin 20-day female
(220)
head, mated 1-day female
(383)
head, mated 4-day female
(174)
head, mated 20-day female
(189)
head, mated 1-day male
(591)
head, mated 4-day male
(268)
head, mated 20-day male
(265)
salivary gland, larvae L3 wandering
31
salivary gland, white prepupae
47
digestive system, larvae L3 wandering
73
digestive system, 1-day adult
(233)
digestive system, 4-day adult
(122)
digestive system, 20-day adult
(141)
fat body, larvae L3 wandering
(407)
fat body, white prepupae
(187)
fat body, pupae P8
104
carcass, larvae L3 wandering
(235)
carcass, 1-day adult
(1717)
carcass, 4-day adult
(614)
carcass, 20-day adult
(235)
ovary, virgin 4-day female
(235)
ovary, mated 4-day female
(204)
testis, mated 4-day male
55
accessory gland, mated 4-day male
91
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Linear, scaled to Extremely high expression
Tissue
Expression Level
imaginal disc, larvae L3 wandering
111
central nervous system, larvae L3
97
central nervous system, pupae P8
64
head, virgin 1-day female
520
head, virgin 4-day female
249
head, virgin 20-day female
220
head, mated 1-day female
383
head, mated 4-day female
174
head, mated 20-day female
189
head, mated 1-day male
591
head, mated 4-day male
268
head, mated 20-day male
265
salivary gland, larvae L3 wandering
31
salivary gland, white prepupae
47
digestive system, larvae L3 wandering
73
digestive system, 1-day adult
233
digestive system, 4-day adult
122
digestive system, 20-day adult
141
fat body, larvae L3 wandering
407
fat body, white prepupae
187
fat body, pupae P8
104
carcass, larvae L3 wandering
235
carcass, 1-day adult
1717
carcass, 4-day adult
614
carcass, 20-day adult
235
ovary, virgin 4-day female
235
ovary, mated 4-day female
204
testis, mated 4-day male
55
accessory gland, mated 4-day male
91
Expression Level Scale
Extremely high
log, scaled to maximum expression level
Tissue
Expression Level
imaginal disc, larvae L3 wandering
111
central nervous system, larvae L3
97
central nervous system, pupae P8
64
head, virgin 1-day female
520
head, virgin 4-day female
249
head, virgin 20-day female
220
head, mated 1-day female
383
head, mated 4-day female
174
head, mated 20-day female
189
head, mated 1-day male
591
head, mated 4-day male
268
head, mated 20-day male
265
salivary gland, larvae L3 wandering
31
salivary gland, white prepupae
47
digestive system, larvae L3 wandering
73
digestive system, 1-day adult
233
digestive system, 4-day adult
122
digestive system, 20-day adult
141
fat body, larvae L3 wandering
407
fat body, white prepupae
187
fat body, pupae P8
104
carcass, larvae L3 wandering
235
carcass, 1-day adult
1717
carcass, 4-day adult
614
carcass, 20-day adult
235
ovary, virgin 4-day female
235
ovary, mated 4-day female
204
testis, mated 4-day male
55
accessory gland, mated 4-day male
91
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
log, scaled to Moderate expression
Tissue
Expression Level
imaginal disc, larvae L3 wandering
(111)
central nervous system, larvae L3
(97)
central nervous system, pupae P8
(64)
head, virgin 1-day female
(520)
head, virgin 4-day female
(249)
head, virgin 20-day female
(220)
head, mated 1-day female
(383)
head, mated 4-day female
(174)
head, mated 20-day female
(189)
head, mated 1-day male
(591)
head, mated 4-day male
(268)
head, mated 20-day male
(265)
salivary gland, larvae L3 wandering
31
salivary gland, white prepupae
(47)
digestive system, larvae L3 wandering
(73)
digestive system, 1-day adult
(233)
digestive system, 4-day adult
(122)
digestive system, 20-day adult
(141)
fat body, larvae L3 wandering
(407)
fat body, white prepupae
(187)
fat body, pupae P8
(104)
carcass, larvae L3 wandering
(235)
carcass, 1-day adult
(1717)
carcass, 4-day adult
(614)
carcass, 20-day adult
(235)
ovary, virgin 4-day female
(235)
ovary, mated 4-day female
(204)
testis, mated 4-day male
(55)
accessory gland, mated 4-day male
(91)
Expression Level Scale
Very low
Low
Moderate
Moderately high
log, scaled to High expression
Tissue
Expression Level
imaginal disc, larvae L3 wandering
111
central nervous system, larvae L3
97
central nervous system, pupae P8
64
head, virgin 1-day female
(520)
head, virgin 4-day female
(249)
head, virgin 20-day female
(220)
head, mated 1-day female
(383)
head, mated 4-day female
(174)
head, mated 20-day female
(189)
head, mated 1-day male
(591)
head, mated 4-day male
(268)
head, mated 20-day male
(265)
salivary gland, larvae L3 wandering
31
salivary gland, white prepupae
47
digestive system, larvae L3 wandering
73
digestive system, 1-day adult
(233)
digestive system, 4-day adult
122
digestive system, 20-day adult
141
fat body, larvae L3 wandering
(407)
fat body, white prepupae
(187)
fat body, pupae P8
104
carcass, larvae L3 wandering
(235)
carcass, 1-day adult
(1717)
carcass, 4-day adult
(614)
carcass, 20-day adult
(235)
ovary, virgin 4-day female
(235)
ovary, mated 4-day female
(204)
testis, mated 4-day male
55
accessory gland, mated 4-day male
91
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
log, scaled to Extremely high expression
Tissue
Expression Level
imaginal disc, larvae L3 wandering
111
central nervous system, larvae L3
97
central nervous system, pupae P8
64
head, virgin 1-day female
520
head, virgin 4-day female
249
head, virgin 20-day female
220
head, mated 1-day female
383
head, mated 4-day female
174
head, mated 20-day female
189
head, mated 1-day male
591
head, mated 4-day male
268
head, mated 20-day male
265
salivary gland, larvae L3 wandering
31
salivary gland, white prepupae
47
digestive system, larvae L3 wandering
73
digestive system, 1-day adult
233
digestive system, 4-day adult
122
digestive system, 20-day adult
141
fat body, larvae L3 wandering
407
fat body, white prepupae
187
fat body, pupae P8
104
carcass, larvae L3 wandering
235
carcass, 1-day adult
1717
carcass, 4-day adult
614
carcass, 20-day adult
235
ovary, virgin 4-day female
235
ovary, mated 4-day female
204
testis, mated 4-day male
55
accessory gland, mated 4-day male
91
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
Heatmap
Tissue
Expression Level
imaginal disc, larvae L3 wandering
central nervous system, larvae L3
central nervous system, pupae P8
head, virgin 1-day female
head, virgin 4-day female
head, virgin 20-day female
head, mated 1-day female
head, mated 4-day female
head, mated 20-day female
head, mated 1-day male
head, mated 4-day male
head, mated 20-day male
salivary gland, larvae L3 wandering
salivary gland, white prepupae
digestive system, larvae L3 wandering
digestive system, 1-day adult
digestive system, 4-day adult
digestive system, 20-day adult
fat body, larvae L3 wandering
fat body, white prepupae
fat body, pupae P8
carcass, larvae L3 wandering
carcass, 1-day adult
carcass, 4-day adult
carcass, 20-day adult
ovary, virgin 4-day female
ovary, mated 4-day female
testis, mated 4-day male
accessory gland, mated 4-day male
modENCODE Development RNA-Seq
Linear, scaled to maximum expression level
Developmental Stage
Expression Level
embryo 00-02hr
465
embryo 02-04hr
65
embryo 04-06hr
11
embryo 06-08hr
7
embryo 08-10hr
11
embryo 10-12hr
20
embryo 12-14hr
29
embryo 14-16hr
190
embryo 16-18hr
257
embryo 18-20hr
353
embryo 20-22hr
425
embryo 22-24hr
378
larva L1
1130
larva L2
1359
larva L3 12hr old
1666
larva L3 puffstage 1-2
1459
larva L3 puffstage 3-6
861
larva L3 puffstage 7-9
376
white prepupae new
246
white prepupae 12hr
159
white prepupae 24hr
146
pupae 2d postWPP
388
pupae 3d postWPP
1144
pupae 4d postWPP
2375
adult male 01day
2138
adult male 05day
1690
adult male 30day
410
adult female 01day
2057
adult female 05day
668
adult female 30day
477
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
Linear, scaled to Moderate expression
Developmental Stage
Expression Level
embryo 00-02hr
(465)
embryo 02-04hr
(65)
embryo 04-06hr
11
embryo 06-08hr
7
embryo 08-10hr
11
embryo 10-12hr
20
embryo 12-14hr
(29)
embryo 14-16hr
(190)
embryo 16-18hr
(257)
embryo 18-20hr
(353)
embryo 20-22hr
(425)
embryo 22-24hr
(378)
larva L1
(1130)
larva L2
(1359)
larva L3 12hr old
(1666)
larva L3 puffstage 1-2
(1459)
larva L3 puffstage 3-6
(861)
larva L3 puffstage 7-9
(376)
white prepupae new
(246)
white prepupae 12hr
(159)
white prepupae 24hr
(146)
pupae 2d postWPP
(388)
pupae 3d postWPP
(1144)
pupae 4d postWPP
(2375)
adult male 01day
(2138)
adult male 05day
(1690)
adult male 30day
(410)
adult female 01day
(2057)
adult female 05day
(668)
adult female 30day
(477)
Expression Level Scale
Very low
Low
Moderate
Moderately high
Linear, scaled to High expression
Developmental Stage
Expression Level
embryo 00-02hr
(465)
embryo 02-04hr
65
embryo 04-06hr
11
embryo 06-08hr
7
embryo 08-10hr
11
embryo 10-12hr
20
embryo 12-14hr
29
embryo 14-16hr
(190)
embryo 16-18hr
(257)
embryo 18-20hr
(353)
embryo 20-22hr
(425)
embryo 22-24hr
(378)
larva L1
(1130)
larva L2
(1359)
larva L3 12hr old
(1666)
larva L3 puffstage 1-2
(1459)
larva L3 puffstage 3-6
(861)
larva L3 puffstage 7-9
(376)
white prepupae new
(246)
white prepupae 12hr
(159)
white prepupae 24hr
(146)
pupae 2d postWPP
(388)
pupae 3d postWPP
(1144)
pupae 4d postWPP
(2375)
adult male 01day
(2138)
adult male 05day
(1690)
adult male 30day
(410)
adult female 01day
(2057)
adult female 05day
(668)
adult female 30day
(477)
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Linear, scaled to Extremely high expression
Developmental Stage
Expression Level
embryo 00-02hr
465
embryo 02-04hr
65
embryo 04-06hr
11
embryo 06-08hr
7
embryo 08-10hr
11
embryo 10-12hr
20
embryo 12-14hr
29
embryo 14-16hr
190
embryo 16-18hr
257
embryo 18-20hr
353
embryo 20-22hr
425
embryo 22-24hr
378
larva L1
1130
larva L2
1359
larva L3 12hr old
1666
larva L3 puffstage 1-2
1459
larva L3 puffstage 3-6
861
larva L3 puffstage 7-9
376
white prepupae new
246
white prepupae 12hr
159
white prepupae 24hr
146
pupae 2d postWPP
388
pupae 3d postWPP
1144
pupae 4d postWPP
2375
adult male 01day
2138
adult male 05day
1690
adult male 30day
410
adult female 01day
2057
adult female 05day
668
adult female 30day
477
Expression Level Scale
Extremely high
log, scaled to maximum expression level
Developmental Stage
Expression Level
embryo 00-02hr
465
embryo 02-04hr
65
embryo 04-06hr
11
embryo 06-08hr
7
embryo 08-10hr
11
embryo 10-12hr
20
embryo 12-14hr
29
embryo 14-16hr
190
embryo 16-18hr
257
embryo 18-20hr
353
embryo 20-22hr
425
embryo 22-24hr
378
larva L1
1130
larva L2
1359
larva L3 12hr old
1666
larva L3 puffstage 1-2
1459
larva L3 puffstage 3-6
861
larva L3 puffstage 7-9
376
white prepupae new
246
white prepupae 12hr
159
white prepupae 24hr
146
pupae 2d postWPP
388
pupae 3d postWPP
1144
pupae 4d postWPP
2375
adult male 01day
2138
adult male 05day
1690
adult male 30day
410
adult female 01day
2057
adult female 05day
668
adult female 30day
477
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
log, scaled to Moderate expression
Developmental Stage
Expression Level
embryo 00-02hr
(465)
embryo 02-04hr
(65)
embryo 04-06hr
11
embryo 06-08hr
7
embryo 08-10hr
11
embryo 10-12hr
20
embryo 12-14hr
29
embryo 14-16hr
(190)
embryo 16-18hr
(257)
embryo 18-20hr
(353)
embryo 20-22hr
(425)
embryo 22-24hr
(378)
larva L1
(1130)
larva L2
(1359)
larva L3 12hr old
(1666)
larva L3 puffstage 1-2
(1459)
larva L3 puffstage 3-6
(861)
larva L3 puffstage 7-9
(376)
white prepupae new
(246)
white prepupae 12hr
(159)
white prepupae 24hr
(146)
pupae 2d postWPP
(388)
pupae 3d postWPP
(1144)
pupae 4d postWPP
(2375)
adult male 01day
(2138)
adult male 05day
(1690)
adult male 30day
(410)
adult female 01day
(2057)
adult female 05day
(668)
adult female 30day
(477)
Expression Level Scale
Very low
Low
Moderate
Moderately high
log, scaled to High expression
Developmental Stage
Expression Level
embryo 00-02hr
(465)
embryo 02-04hr
65
embryo 04-06hr
11
embryo 06-08hr
7
embryo 08-10hr
11
embryo 10-12hr
20
embryo 12-14hr
29
embryo 14-16hr
(190)
embryo 16-18hr
(257)
embryo 18-20hr
(353)
embryo 20-22hr
(425)
embryo 22-24hr
(378)
larva L1
(1130)
larva L2
(1359)
larva L3 12hr old
(1666)
larva L3 puffstage 1-2
(1459)
larva L3 puffstage 3-6
(861)
larva L3 puffstage 7-9
(376)
white prepupae new
(246)
white prepupae 12hr
(159)
white prepupae 24hr
(146)
pupae 2d postWPP
(388)
pupae 3d postWPP
(1144)
pupae 4d postWPP
(2375)
adult male 01day
(2138)
adult male 05day
(1690)
adult male 30day
(410)
adult female 01day
(2057)
adult female 05day
(668)
adult female 30day
(477)
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
log, scaled to Extremely high expression
Developmental Stage
Expression Level
embryo 00-02hr
465
embryo 02-04hr
65
embryo 04-06hr
11
embryo 06-08hr
7
embryo 08-10hr
11
embryo 10-12hr
20
embryo 12-14hr
29
embryo 14-16hr
190
embryo 16-18hr
257
embryo 18-20hr
353
embryo 20-22hr
425
embryo 22-24hr
378
larva L1
1130
larva L2
1359
larva L3 12hr old
1666
larva L3 puffstage 1-2
1459
larva L3 puffstage 3-6
861
larva L3 puffstage 7-9
376
white prepupae new
246
white prepupae 12hr
159
white prepupae 24hr
146
pupae 2d postWPP
388
pupae 3d postWPP
1144
pupae 4d postWPP
2375
adult male 01day
2138
adult male 05day
1690
adult male 30day
410
adult female 01day
2057
adult female 05day
668
adult female 30day
477
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
Heatmap
Developmental Stage
Expression Level
embryo 00-02hr
embryo 02-04hr
embryo 04-06hr
embryo 06-08hr
embryo 08-10hr
embryo 10-12hr
embryo 12-14hr
embryo 14-16hr
embryo 16-18hr
embryo 18-20hr
embryo 20-22hr
embryo 22-24hr
larva L1
larva L2
larva L3 12hr old
larva L3 puffstage 1-2
larva L3 puffstage 3-6
larva L3 puffstage 7-9
white prepupae new
white prepupae 12hr
white prepupae 24hr
pupae 2d postWPP
pupae 3d postWPP
pupae 4d postWPP
adult male 01day
adult male 05day
adult male 30day
adult female 01day
adult female 05day
adult female 30day
modENCODE Cell Lines RNA-Seq
Linear, scaled to maximum expression level
Cell Line
Expression Level
Schneider line 2 S2R+
296
Schneider line 2 Sg4
151
embryonic 1182-4H
141
embryonic GM2
101
embryonic Kc167
138
embryonic S1
121
embryonic S3
124
leg disc CME L1
146
wing disc CME-W2
160
wing disc ML-DmD8
196
wing disc ML-DmD9
218
wing disc ML-DmD16-c3
144
wing disc ML-DmD21
163
wing disc ML-DmD32
188
haltere disc ML-DmD17-c3
160
eye-antennal disc ML-DmD11
139
antennal disc ML-DmD20-c5
191
mixed discs ML-DmD4-c1
281
CNS ML-DmBG1-c1
209
CNS ML-DmBG2-c2
134
tumorous blood cells mbn2
132
ovary fGS/OSS
156
ovary OSC
72
ovary OSS
39
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Linear, scaled to Moderate expression
Cell Line
Expression Level
Schneider line 2 S2R+
(296)
Schneider line 2 Sg4
(151)
embryonic 1182-4H
(141)
embryonic GM2
(101)
embryonic Kc167
(138)
embryonic S1
(121)
embryonic S3
(124)
leg disc CME L1
(146)
wing disc CME-W2
(160)
wing disc ML-DmD8
(196)
wing disc ML-DmD9
(218)
wing disc ML-DmD16-c3
(144)
wing disc ML-DmD21
(163)
wing disc ML-DmD32
(188)
haltere disc ML-DmD17-c3
(160)
eye-antennal disc ML-DmD11
(139)
antennal disc ML-DmD20-c5
(191)
mixed discs ML-DmD4-c1
(281)
CNS ML-DmBG1-c1
(209)
CNS ML-DmBG2-c2
(134)
tumorous blood cells mbn2
(132)
ovary fGS/OSS
(156)
ovary OSC
(72)
ovary OSS
(39)
Expression Level Scale
Very low
Low
Moderate
Moderately high
Linear, scaled to High expression
Cell Line
Expression Level
Schneider line 2 S2R+
(296)
Schneider line 2 Sg4
(151)
embryonic 1182-4H
(141)
embryonic GM2
101
embryonic Kc167
(138)
embryonic S1
(121)
embryonic S3
(124)
leg disc CME L1
(146)
wing disc CME-W2
(160)
wing disc ML-DmD8
(196)
wing disc ML-DmD9
(218)
wing disc ML-DmD16-c3
(144)
wing disc ML-DmD21
(163)
wing disc ML-DmD32
(188)
haltere disc ML-DmD17-c3
(160)
eye-antennal disc ML-DmD11
(139)
antennal disc ML-DmD20-c5
(191)
mixed discs ML-DmD4-c1
(281)
CNS ML-DmBG1-c1
(209)
CNS ML-DmBG2-c2
(134)
tumorous blood cells mbn2
(132)
ovary fGS/OSS
(156)
ovary OSC
72
ovary OSS
39
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Linear, scaled to Extremely high expression
Cell Line
Expression Level
Schneider line 2 S2R+
296
Schneider line 2 Sg4
151
embryonic 1182-4H
141
embryonic GM2
101
embryonic Kc167
138
embryonic S1
121
embryonic S3
124
leg disc CME L1
146
wing disc CME-W2
160
wing disc ML-DmD8
196
wing disc ML-DmD9
218
wing disc ML-DmD16-c3
144
wing disc ML-DmD21
163
wing disc ML-DmD32
188
haltere disc ML-DmD17-c3
160
eye-antennal disc ML-DmD11
139
antennal disc ML-DmD20-c5
191
mixed discs ML-DmD4-c1
281
CNS ML-DmBG1-c1
209
CNS ML-DmBG2-c2
134
tumorous blood cells mbn2
132
ovary fGS/OSS
156
ovary OSC
72
ovary OSS
39
Expression Level Scale
Extremely high
log, scaled to maximum expression level
Cell Line
Expression Level
Schneider line 2 S2R+
296
Schneider line 2 Sg4
151
embryonic 1182-4H
141
embryonic GM2
101
embryonic Kc167
138
embryonic S1
121
embryonic S3
124
leg disc CME L1
146
wing disc CME-W2
160
wing disc ML-DmD8
196
wing disc ML-DmD9
218
wing disc ML-DmD16-c3
144
wing disc ML-DmD21
163
wing disc ML-DmD32
188
haltere disc ML-DmD17-c3
160
eye-antennal disc ML-DmD11
139
antennal disc ML-DmD20-c5
191
mixed discs ML-DmD4-c1
281
CNS ML-DmBG1-c1
209
CNS ML-DmBG2-c2
134
tumorous blood cells mbn2
132
ovary fGS/OSS
156
ovary OSC
72
ovary OSS
39
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
log, scaled to Moderate expression
Cell Line
Expression Level
Schneider line 2 S2R+
(296)
Schneider line 2 Sg4
(151)
embryonic 1182-4H
(141)
embryonic GM2
(101)
embryonic Kc167
(138)
embryonic S1
(121)
embryonic S3
(124)
leg disc CME L1
(146)
wing disc CME-W2
(160)
wing disc ML-DmD8
(196)
wing disc ML-DmD9
(218)
wing disc ML-DmD16-c3
(144)
wing disc ML-DmD21
(163)
wing disc ML-DmD32
(188)
haltere disc ML-DmD17-c3
(160)
eye-antennal disc ML-DmD11
(139)
antennal disc ML-DmD20-c5
(191)
mixed discs ML-DmD4-c1
(281)
CNS ML-DmBG1-c1
(209)
CNS ML-DmBG2-c2
(134)
tumorous blood cells mbn2
(132)
ovary fGS/OSS
(156)
ovary OSC
(72)
ovary OSS
(39)
Expression Level Scale
Very low
Low
Moderate
Moderately high
log, scaled to High expression
Cell Line
Expression Level
Schneider line 2 S2R+
(296)
Schneider line 2 Sg4
(151)
embryonic 1182-4H
141
embryonic GM2
101
embryonic Kc167
138
embryonic S1
121
embryonic S3
124
leg disc CME L1
(146)
wing disc CME-W2
(160)
wing disc ML-DmD8
(196)
wing disc ML-DmD9
(218)
wing disc ML-DmD16-c3
(144)
wing disc ML-DmD21
(163)
wing disc ML-DmD32
(188)
haltere disc ML-DmD17-c3
(160)
eye-antennal disc ML-DmD11
139
antennal disc ML-DmD20-c5
(191)
mixed discs ML-DmD4-c1
(281)
CNS ML-DmBG1-c1
(209)
CNS ML-DmBG2-c2
134
tumorous blood cells mbn2
132
ovary fGS/OSS
(156)
ovary OSC
72
ovary OSS
39
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
log, scaled to Extremely high expression
Cell Line
Expression Level
Schneider line 2 S2R+
296
Schneider line 2 Sg4
151
embryonic 1182-4H
141
embryonic GM2
101
embryonic Kc167
138
embryonic S1
121
embryonic S3
124
leg disc CME L1
146
wing disc CME-W2
160
wing disc ML-DmD8
196
wing disc ML-DmD9
218
wing disc ML-DmD16-c3
144
wing disc ML-DmD21
163
wing disc ML-DmD32
188
haltere disc ML-DmD17-c3
160
eye-antennal disc ML-DmD11
139
antennal disc ML-DmD20-c5
191
mixed discs ML-DmD4-c1
281
CNS ML-DmBG1-c1
209
CNS ML-DmBG2-c2
134
tumorous blood cells mbn2
132
ovary fGS/OSS
156
ovary OSC
72
ovary OSS
39
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
Heatmap
Cell Line
Expression Level
Schneider line 2 S2R+
Schneider line 2 Sg4
embryonic 1182-4H
embryonic GM2
embryonic Kc167
embryonic S1
embryonic S3
leg disc CME L1
wing disc CME-W2
wing disc ML-DmD8
wing disc ML-DmD9
wing disc ML-DmD16-c3
wing disc ML-DmD21
wing disc ML-DmD32
haltere disc ML-DmD17-c3
eye-antennal disc ML-DmD11
antennal disc ML-DmD20-c5
mixed discs ML-DmD4-c1
CNS ML-DmBG1-c1
CNS ML-DmBG2-c2
tumorous blood cells mbn2
ovary fGS/OSS
ovary OSC
ovary OSS
modENCODE Treatments RNA-Seq
Linear, scaled to maximum expression level
Treatment
Expression Level
extended cold, 4-day adult
291
cold shock, 4-day adult
178
heat shock, 4-day adult
897
Cadmium 50 mM 6 hrs, larvae L3
1206
Cadmium 50 mM 12 hrs, larvae L3
853
Cadmium 50 mM 48 hrs, 4-day adult
792
Cadmium 100 mM 48 hrs, 4-day adult
303
Copper 0.5 mM 12 hrs, larvae L3
968
Copper 15 mM 48 hrs, 4-day adult
119
Zinc 5 mM 12 hrs, larvae L3
581
Zinc 4.5 mM 48 hrs, 4-day adult
196
Ethanol 2.5% 3 hrs, larvae L3
632
Ethanol 5% 3 hrs, larvae L3
912
Ethanol 10% 3 hrs, larvae L3
1490
Caffeine 1.5 mg/ml 4 hrs, larvae L3
1026
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
256
Caffeine 25 mg/ml 48 hrs, 4-day adult
261
Paraquat 5 mM 48 hrs, 4-day adult
551
Paraquat 10 mM 48 hrs, 4-day adult
654
Rotenone 2 μg 12 hrs, larvae L3
1195
Rotenone 8 μg 12 hrs, larvae L3
1496
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
Linear, scaled to Moderate expression
Treatment
Expression Level
extended cold, 4-day adult
(291)
cold shock, 4-day adult
(178)
heat shock, 4-day adult
(897)
Cadmium 50 mM 6 hrs, larvae L3
(1206)
Cadmium 50 mM 12 hrs, larvae L3
(853)
Cadmium 50 mM 48 hrs, 4-day adult
(792)
Cadmium 100 mM 48 hrs, 4-day adult
(303)
Copper 0.5 mM 12 hrs, larvae L3
(968)
Copper 15 mM 48 hrs, 4-day adult
(119)
Zinc 5 mM 12 hrs, larvae L3
(581)
Zinc 4.5 mM 48 hrs, 4-day adult
(196)
Ethanol 2.5% 3 hrs, larvae L3
(632)
Ethanol 5% 3 hrs, larvae L3
(912)
Ethanol 10% 3 hrs, larvae L3
(1490)
Caffeine 1.5 mg/ml 4 hrs, larvae L3
(1026)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
(256)
Caffeine 25 mg/ml 48 hrs, 4-day adult
(261)
Paraquat 5 mM 48 hrs, 4-day adult
(551)
Paraquat 10 mM 48 hrs, 4-day adult
(654)
Rotenone 2 μg 12 hrs, larvae L3
(1195)
Rotenone 8 μg 12 hrs, larvae L3
(1496)
Expression Level Scale
Very low
Low
Moderate
Moderately high
Linear, scaled to High expression
Treatment
Expression Level
extended cold, 4-day adult
(291)
cold shock, 4-day adult
(178)
heat shock, 4-day adult
(897)
Cadmium 50 mM 6 hrs, larvae L3
(1206)
Cadmium 50 mM 12 hrs, larvae L3
(853)
Cadmium 50 mM 48 hrs, 4-day adult
(792)
Cadmium 100 mM 48 hrs, 4-day adult
(303)
Copper 0.5 mM 12 hrs, larvae L3
(968)
Copper 15 mM 48 hrs, 4-day adult
(119)
Zinc 5 mM 12 hrs, larvae L3
(581)
Zinc 4.5 mM 48 hrs, 4-day adult
(196)
Ethanol 2.5% 3 hrs, larvae L3
(632)
Ethanol 5% 3 hrs, larvae L3
(912)
Ethanol 10% 3 hrs, larvae L3
(1490)
Caffeine 1.5 mg/ml 4 hrs, larvae L3
(1026)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
(256)
Caffeine 25 mg/ml 48 hrs, 4-day adult
(261)
Paraquat 5 mM 48 hrs, 4-day adult
(551)
Paraquat 10 mM 48 hrs, 4-day adult
(654)
Rotenone 2 μg 12 hrs, larvae L3
(1195)
Rotenone 8 μg 12 hrs, larvae L3
(1496)
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Linear, scaled to Extremely high expression
Treatment
Expression Level
extended cold, 4-day adult
291
cold shock, 4-day adult
178
heat shock, 4-day adult
897
Cadmium 50 mM 6 hrs, larvae L3
1206
Cadmium 50 mM 12 hrs, larvae L3
853
Cadmium 50 mM 48 hrs, 4-day adult
792
Cadmium 100 mM 48 hrs, 4-day adult
303
Copper 0.5 mM 12 hrs, larvae L3
968
Copper 15 mM 48 hrs, 4-day adult
119
Zinc 5 mM 12 hrs, larvae L3
581
Zinc 4.5 mM 48 hrs, 4-day adult
196
Ethanol 2.5% 3 hrs, larvae L3
632
Ethanol 5% 3 hrs, larvae L3
912
Ethanol 10% 3 hrs, larvae L3
1490
Caffeine 1.5 mg/ml 4 hrs, larvae L3
1026
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
256
Caffeine 25 mg/ml 48 hrs, 4-day adult
261
Paraquat 5 mM 48 hrs, 4-day adult
551
Paraquat 10 mM 48 hrs, 4-day adult
654
Rotenone 2 μg 12 hrs, larvae L3
1195
Rotenone 8 μg 12 hrs, larvae L3
1496
Expression Level Scale
Extremely high
log, scaled to maximum expression level
Treatment
Expression Level
extended cold, 4-day adult
291
cold shock, 4-day adult
178
heat shock, 4-day adult
897
Cadmium 50 mM 6 hrs, larvae L3
1206
Cadmium 50 mM 12 hrs, larvae L3
853
Cadmium 50 mM 48 hrs, 4-day adult
792
Cadmium 100 mM 48 hrs, 4-day adult
303
Copper 0.5 mM 12 hrs, larvae L3
968
Copper 15 mM 48 hrs, 4-day adult
119
Zinc 5 mM 12 hrs, larvae L3
581
Zinc 4.5 mM 48 hrs, 4-day adult
196
Ethanol 2.5% 3 hrs, larvae L3
632
Ethanol 5% 3 hrs, larvae L3
912
Ethanol 10% 3 hrs, larvae L3
1490
Caffeine 1.5 mg/ml 4 hrs, larvae L3
1026
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
256
Caffeine 25 mg/ml 48 hrs, 4-day adult
261
Paraquat 5 mM 48 hrs, 4-day adult
551
Paraquat 10 mM 48 hrs, 4-day adult
654
Rotenone 2 μg 12 hrs, larvae L3
1195
Rotenone 8 μg 12 hrs, larvae L3
1496
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
log, scaled to Moderate expression
Treatment
Expression Level
extended cold, 4-day adult
(291)
cold shock, 4-day adult
(178)
heat shock, 4-day adult
(897)
Cadmium 50 mM 6 hrs, larvae L3
(1206)
Cadmium 50 mM 12 hrs, larvae L3
(853)
Cadmium 50 mM 48 hrs, 4-day adult
(792)
Cadmium 100 mM 48 hrs, 4-day adult
(303)
Copper 0.5 mM 12 hrs, larvae L3
(968)
Copper 15 mM 48 hrs, 4-day adult
(119)
Zinc 5 mM 12 hrs, larvae L3
(581)
Zinc 4.5 mM 48 hrs, 4-day adult
(196)
Ethanol 2.5% 3 hrs, larvae L3
(632)
Ethanol 5% 3 hrs, larvae L3
(912)
Ethanol 10% 3 hrs, larvae L3
(1490)
Caffeine 1.5 mg/ml 4 hrs, larvae L3
(1026)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
(256)
Caffeine 25 mg/ml 48 hrs, 4-day adult
(261)
Paraquat 5 mM 48 hrs, 4-day adult
(551)
Paraquat 10 mM 48 hrs, 4-day adult
(654)
Rotenone 2 μg 12 hrs, larvae L3
(1195)
Rotenone 8 μg 12 hrs, larvae L3
(1496)
Expression Level Scale
Very low
Low
Moderate
Moderately high
log, scaled to High expression
Treatment
Expression Level
extended cold, 4-day adult
(291)
cold shock, 4-day adult
(178)
heat shock, 4-day adult
(897)
Cadmium 50 mM 6 hrs, larvae L3
(1206)
Cadmium 50 mM 12 hrs, larvae L3
(853)
Cadmium 50 mM 48 hrs, 4-day adult
(792)
Cadmium 100 mM 48 hrs, 4-day adult
(303)
Copper 0.5 mM 12 hrs, larvae L3
(968)
Copper 15 mM 48 hrs, 4-day adult
119
Zinc 5 mM 12 hrs, larvae L3
(581)
Zinc 4.5 mM 48 hrs, 4-day adult
(196)
Ethanol 2.5% 3 hrs, larvae L3
(632)
Ethanol 5% 3 hrs, larvae L3
(912)
Ethanol 10% 3 hrs, larvae L3
(1490)
Caffeine 1.5 mg/ml 4 hrs, larvae L3
(1026)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
(256)
Caffeine 25 mg/ml 48 hrs, 4-day adult
(261)
Paraquat 5 mM 48 hrs, 4-day adult
(551)
Paraquat 10 mM 48 hrs, 4-day adult
(654)
Rotenone 2 μg 12 hrs, larvae L3
(1195)
Rotenone 8 μg 12 hrs, larvae L3
(1496)
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
log, scaled to Extremely high expression
Treatment
Expression Level
extended cold, 4-day adult
291
cold shock, 4-day adult
178
heat shock, 4-day adult
897
Cadmium 50 mM 6 hrs, larvae L3
1206
Cadmium 50 mM 12 hrs, larvae L3
853
Cadmium 50 mM 48 hrs, 4-day adult
792
Cadmium 100 mM 48 hrs, 4-day adult
303
Copper 0.5 mM 12 hrs, larvae L3
968
Copper 15 mM 48 hrs, 4-day adult
119
Zinc 5 mM 12 hrs, larvae L3
581
Zinc 4.5 mM 48 hrs, 4-day adult
196
Ethanol 2.5% 3 hrs, larvae L3
632
Ethanol 5% 3 hrs, larvae L3
912
Ethanol 10% 3 hrs, larvae L3
1490
Caffeine 1.5 mg/ml 4 hrs, larvae L3
1026
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
256
Caffeine 25 mg/ml 48 hrs, 4-day adult
261
Paraquat 5 mM 48 hrs, 4-day adult
551
Paraquat 10 mM 48 hrs, 4-day adult
654
Rotenone 2 μg 12 hrs, larvae L3
1195
Rotenone 8 μg 12 hrs, larvae L3
1496
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
Heatmap
Treatment
Expression Level
extended cold, 4-day adult
cold shock, 4-day adult
heat shock, 4-day adult
Cadmium 50 mM 6 hrs, larvae L3
Cadmium 50 mM 12 hrs, larvae L3
Cadmium 50 mM 48 hrs, 4-day adult
Cadmium 100 mM 48 hrs, 4-day adult
Copper 0.5 mM 12 hrs, larvae L3
Copper 15 mM 48 hrs, 4-day adult
Zinc 5 mM 12 hrs, larvae L3
Zinc 4.5 mM 48 hrs, 4-day adult
Ethanol 2.5% 3 hrs, larvae L3
Ethanol 5% 3 hrs, larvae L3
Ethanol 10% 3 hrs, larvae L3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
Caffeine 25 mg/ml 48 hrs, 4-day adult
Paraquat 5 mM 48 hrs, 4-day adult
Paraquat 10 mM 48 hrs, 4-day adult
Rotenone 2 μg 12 hrs, larvae L3
Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
External Data & Images
Linkouts
- Cell culture data for RNAi and other high-throughput technologies
- Adult expression by tissue, using Affymetrix Dros2 array
Alleles & Phenotypes Summary of Allele Phenotypes Classical Alleles ( 3 ) For All Classical Alleles Show Alleles Carried on Transgenic Constructs
( 8 ) For All Alleles Carried on Transgenic
Constructs Show Aneuploid Aberrations Disrupted in Transgenic Constructs & Insertions
Transgenic Constructs characterization construct
Insertions insertion of enhancer trap
insertion of mobile activating element
Gene Ontology: Function, Process
& Cellular Component ( 9 unique terms ) Terms Based on
Experimental Evidence ( 5 terms ) Molecular Function inferred from direct assay
Biological Process inferred from expression pattern
Cellular Component inferred from direct assay
inferred from direct assay
inferred from direct assay
Terms Based on Predictions or
Assertions ( 6 terms ) Molecular Function non-traceable author statement
Biological Process non-traceable author statement
Cellular Component non-traceable author statement
Sequence Ontology: Class of Gene Interactions & Pathways
Summary of Physical Interactions
protein-protein experimental knowledge based
experimental knowledge based
experimental knowledge based
experimental knowledge based
experimental knowledge based
experimental knowledge based
experimental knowledge based
experimental knowledge based
experimental knowledge based
experimental knowledge based
experimental knowledge based
Summary of Genetic Interactions Interacts with Please look at the allele data
for full details of the genetic interactions
External Data Linkouts
- A database of protein and genetic interactions
- DPiM, Drosophila Protein interaction Map
- A comprehensive database of gene and protein interactions.
Protein-protein interactions (PPI) from both known and predicted PPI data sets.
Orthologs
OrthoDB Orthologs (149)
- based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
OrthoDB orthology group searches
Drosophila inclusive ortholog search
Dipteran inclusive ortholog search
Insect inclusive ortholog search
Arthropod inclusive ortholog search
Metazoa inclusive ortholog search
Orthologs in Drosophila Species
(EOG6GJ086 )
Drosophila melanogaster
fruit fly
Drosophila melanogaster
fruit fly
Drosophila pseudoobscura pseudoobscura
Y
Orthologs in non-Drosophila Dipterans
(EOG67SSPK )
Aedes aegypti
Yellow fever mosquito
Y
Anopheles gambiae
Malaria mosquito
Y
Culex quinquefasciatus
Southern house mosquito
Y
Orthologs in non-Dipteran Insects
(EOG670SD2 )
Apis mellifera
Western honey bee
Amel\Gapdh
Y
Nasonia vitripennis
Parasitic wasp
Nvit\Nasvi2EG007624
Y
Acromyrmex echinatior
Panamanian leafcutter ant
Aech\AECH16788
Y
Atta cephalotes
Leafcutter ant
Acep\ACEP17085
Y
Camponotus floridanus
Florida carpenter ant
Cflo\CFLO18811
Y
Harpegnathos saltator
Jerdons jumping ant
Hsal\HSAL18465
Y
Linepithema humile
Argentine ant
Lhum\LH21746
Y
Pogonomyrmex barbatus
Red harvester ant
Pbar\PB21096
Y
Solenopsis invicta
Red fire ant
Sinv\SINV11437
Y
Acyrthosiphon pisum
Pea aphid
Y
Acyrthosiphon pisum
Pea aphid
Y
Acyrthosiphon pisum
Pea aphid
Y
Acyrthosiphon pisum
Pea aphid
Y
Pediculus humanus
Human body louse
Y
Tribolium castaneum
Red flour beetle
Y
Orthologs in non-Insect Arthropods
(EOG66M91C )
Daphnia pulex
Water flea
Y
Ixodes scapularis
Deer tick
Y
Orthologs in non-Arthropod Metazoa
(EOG6BGNPV )
Caenorhabditis elegans
Nematode
Y
Caenorhabditis elegans
Nematode
Y
Caenorhabditis elegans
Nematode
Y
Caenorhabditis elegans
Nematode
Y
Strongylocentrotus purpuratus
Purple sea urchin
Y
Strongylocentrotus purpuratus
Purple sea urchin
Y
Xenopus tropicalis
Western clawed frog
Y
Gallus gallus
Domestic chicken
Y
Gallus gallus
Domestic chicken
Y
Mus musculus
House mouse
Y
Mus musculus
House mouse
Y
Mus musculus
House mouse
Y
Mus musculus
House mouse
Y
Mus musculus
House mouse
Y
Mus musculus
House mouse
Y
Mus musculus
House mouse
Y
Mus musculus
House mouse
Y
Mus musculus
House mouse
Y
Mus musculus
House mouse
Y
Mus musculus
House mouse
Y
Mus musculus
House mouse
Y
Mus musculus
House mouse
Y
Mus musculus
House mouse
Y
Mus musculus
House mouse
Y
Mus musculus
House mouse
Y
Mus musculus
House mouse
Y
Mus musculus
House mouse
Y
Mus musculus
House mouse
Y
Mus musculus
House mouse
Y
Mus musculus
House mouse
Y
Mus musculus
House mouse
Y
Mus musculus
House mouse
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Human Orthologs (2)AAA Orthologs (2)
based on analysis using Dmel annotation version 4.3
Stocks & Reagents Stocks Listed in FlyBase ( 5 )Bloomington VDRC Genomic Clones ( 1 )Please Note FlyBase no
longer curates genomic clone accessions so this list
may not be complete
cDNA Clones ( 309 )Please Note This section lists
cDNAs and ESTs that fall within the genomic extent
of the gene model, which may include cDNAs and ESTs
of genes within introns, or of overlapping genes.
Please see
GBrowse for alignment of the cDNAs and ESTs
to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones Other clones cDNA Clones, End Sequenced
(ESTs) BDGP DGC clones Other clones RNAi & Array Information Linkouts
- Results from RNAi screens.
- GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
Antibody Information
Other Information Discoverer Etymology Identification Relationship to Other Genes Source for database identity of Source for database merge of Additional comments The
Gapdh1 gene may have been derived from the
Gapdh2 gene by retroposition.
Other Comments Identified with: GH12586 <up>FlyBase curator comment: EST subsequently found to be chimeric</up>.
At least a substantial fraction of three glycolytic enzymes of flight muscle cells are found colocalised at the Z-discs and M-lines, glycolytic enzyme colocalisation is interdependent. Localisation of
Gapdh1 ,
Gapdh2 and
Ald at the Z-discs and M-lines requires the presence of at least
Gpdh at the Z-discs and M-lines.
EST GH12586 is chimeric; the 5' portion (AI134984) corresponds to part of
CG4461 , the 3' portion (BG632702) corresponds to part of
Gapdh1 .
The synergistic effects of the Adh locus, or a tightly linked locus, on the quantities of the Mdh1, Gpdh, Pgm, Idh, Men and Gapdh1 gene products in
D.melanogaster derived from an African population has been determined.
The melanogaster and takahashi subgroups of the melanogaster group have small and large subunits of Gapdh, while another 28 species (in 15 subgroups) studied were found to have only either the large or the small subunit of Gapdh.
One of two genes (Gapdh1 and Gapdh2) that code for the enzyme glyceraldehyde-3-phosphate dehydrogenase (GAPDH). These genes are expressed in almost all cells, especially those that undergo a high rate of glycolysis.
External Crossreferences & Linkouts
Sequence Crossreferences
- A searchable database of RefSeq genes.
Other Crossreferences
- Eukarytoic Promoter Database, an annotated collection of POL II promoters
domains - A database of protein families, domains, and functional sites
- Patterns of gene expression in Drosophila embryogenesis
Linkouts
- A database of protein and genetic interactions
- DPiM, Drosophila Protein interaction Map
- A comprehensive database of gene and protein interactions.
- Results from RNAi screens.
- Cell culture data for RNAi and other high-throughput technologies
- Adult expression by tissue, using Affymetrix Dros2 array
- Integrated genomics database for Drosophila, Anopheles, and C.elegans
- GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
Protein-protein interactions (PPI) from both known and predicted PPI data sets.
- Data generated by the modENCODE project.
Synonyms & Secondary IDs
( 25 )Reported As Symbol Synonym CG12055
(
Pile et al., 2003 ,
Kang et al., 2002 ,
Mount, 2001.8.14 ,
Cermelli et al., 2006 ,
Dai et al., 2006 ,
Ni et al., 2011.7.19 ,
O'Keefe et al., 2011 ,
Keleman et al., 2009.8.5 ,
Cammarato et al., 2011 )
Gapdh
(
Hoeffer et al., 2003 ,
Warren et al., 1996 ,
Eanes, 1994 ,
Ahrens et al., 2007 ,
O'Keefe et al., 2011 ,
Lee et al., 2010 ,
Thomas et al., 2012 )
GAPDH
(
Srere and Knull, 1998 ,
Wojtas et al., 1997 ,
Mendjan et al., 2006 ,
Peralta et al., 2012 ,
Sullivan et al., 2003 ,
Hartig et al., 2009 ,
van der Knaap et al., 2010 ,
Sun et al., 2011 ,
Chang et al., 2010 ,
Saulière et al., 2010 ,
Pielage et al., 2008 ,
Duboff et al., 2012 )
Gapdh1
(
Rehwinkel et al., 2006 ,
Flowers et al., 2007 ,
Li et al., 2003 ,
Walser et al., 2006 ,
Matta et al., 2011 ,
Liu and Lehmann, 2008 ,
Muse et al., 2007 ,
Anholt and Williams, 2010 ,
Barnes et al., 2010 )
Name Synonym glyceraldehyde-3-phosphate dehydrogenase
Glyceraldehyde 3 phosphate dehydrogenase
Glyceraldehyde-3-phosphate dehydrogenase1
Glyceraldehyde 3 phosphate dehydrogenase 1
glyceraldehyde 3 phosphate dehydrogenase1
Secondary FlyBase
IDs References ( 88 )Generate a list of List References by type
Recent research papers ( 8 )
Zala et al., 2013, Cell 152(3): 479--491Vesicular glycolysis provides on-board energy for fast axonal transport. [FBrf0220679] Duboff et al., 2012, Neuron 75(4): 618--632Tau Promotes Neurodegeneration via DRP1 Mislocalization In Vivo. [FBrf0219271] Peralta et al., 2012, J. Biol. Chem. 287(29): 24174--24185Coiled Coil Domain-containing Protein 56 (CCDC56) Is a Novel Mitochondrial Protein Essential for Cytochrome c Oxidase Function. [FBrf0218928] Thomas et al., 2012, PLoS ONE 7(7): e40276A Versatile Method for Cell-Specific Profiling of Translated mRNAs in Drosophila. [FBrf0218903] Vesala et al., 2012, Insect Mol. Biol. 21(1): 107--118Cold tolerance and cold-induced modulation of gene expression in two Drosophila virilis group species with different distributions. [FBrf0217233] Matta et al., 2011, Dev. Genes Evol. 221(1): 49--57Getting real with real-time qPCR: a case study of reference gene selection for morphological variation in Drosophila melanogaster wings. [FBrf0213646] O'Keefe et al., 2011, Hum. Mol. Genet. 20(3): 497--509Drosophila orthologue of WWOX, the chromosomal fragile site FRA16D tumour suppressor gene, functions in aerobic metabolism and regulates reactive oxygen species. [FBrf0212691] Sun et al., 2011, PLoS ONE 6(4): e18215Systems-scale analysis reveals pathways involved in cellular response to methamphetamine. [FBrf0213560]
Recent reviews (0)
All reviews listed in FlyBase were published before 2011