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Gene Dmel\janA

General Information
Symbol	Dmel\janA	Species	D. melanogaster
Name	janus A	Annotation symbol	CG7933
Feature type	protein_coding_gene	FlyBase ID	FBgn0001280
Gene Model Status	Current	Stock availability	5 publicly available
Also Known As	janus, jan, Y
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	99D3-99D3	Sequence location	3R:25,864,344..25,865,255 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene janus A is referred to in FlyBase by the symbol Dmel\janA (CG7933, FBgn0001280). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process: sex differentiation. 10 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. Protein features are: Janus/Ocnus. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: larval central nervous system, larval trachea, adult ovary, adult testis. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, adult spermathecae, adult male accessory gland, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1623271_a_at completely aligns to an exonic region common to each of the 3 FlyBase-annotated transcript isoforms of janA. Gene sequence location is 3R:25864344..25865255.
User Contributed Data
	Beta version, feedback welcome
Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
Gene/Allele symbols may differ from current usage	jan: janus Two partially overlapping genes, janA and janB, regulate the expression of somatic sex differentiation. janA is expressed in a complex way in both males and females; janB is only expressed in males (Yanicostas et al., 1989).
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 99D3-99D3   Limits computationally determined from genome sequence between P{PZ}ncd05884 and P{lacW}l(3)s2500s2500
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\janA for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.47 Evidence indicates that 3' UTR overlaps 5' UTR of downstream gene Low-frequency RNA-Seq exon junction(s) not annotated.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) janA-RA FBtr0085597  NM_176586   661   119 janA-RB FBtr0085596  NM_176585   679   135 janA-RC FBtr0085595  NM_206588   682   119
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein janA-PA   FBpp0089165   13.3   119   5.63     NP_788763   AAO41613 janA-PB   FBpp0084962   15.2   135   7.62     NP_788762   AAN14209 janA-PC   FBpp0084961   13.3   119   5.63     NP_996311   AAS65231
Additional Polypeptide Data & Comments
Reported size (kDa)	135, 119 (aa); 12 (kD predicted) (Yanicostas et al., 1989)
Comments	One of a couple of products generated by alternative splicing. (FlyBase, 1992-, FlyBase, 1992-)
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Janus/Ocnus (IPR007702)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014297 AAN14209   AE014297 AAO41613   AE014297 AAS65231   AC007886   AI108917   AI259061   AI294979   AI946780   AY089320 AAL90058   BF497174   BF498200   BF504033   BF504584   BI167780   BI169705   BI213569   BI374684   BI375188   BI485179   BI566718   BI584294   BI584467   BP542759   BP549519   BP549520   BT099636   BT122135   CO177420   EC230156   EV579073   EV600557   GH941983   GH946345   GH946804   GH946892   GH949824   GH954836   GH962575   GH964766   GH965668   GH973364   GH977497   GH983425   M27033 AAC34202   M27033 AAC34203
UniProtKB/Swiss-Prot	P20348
UniProtKB/TrEMBL
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References regulatory region FBsf0000161233 3R:25,865,088..25,865,294 evidence=experimental comment=janA cis regulatory sequences; see @lacZjanA.-56RA@ for expression pattern (Yanicostas et al., 1995) regulatory region FBsf0000161234 3R:25,865,271..25,865,278 comment=DNA replication-related element TATCGATA evidence=predicted (Matsukage et al., 1995) regulatory region FBsf0000436731 3R:25,865,087..25,865,295 evidence=Reporter construct (in vivo) (Yanicostas et al., 1995, Halfon, 2012.6.19)
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   hindgut anlage in statu nascendi   (Fisher et al., 2012) organism | segmentally repeated   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) embryonic stage 7 -- 8   dorsal ectoderm   (Fisher et al., 2012) foregut anlage   (Fisher et al., 2012) hindgut anlage   (Fisher et al., 2012) organism | segmentally repeated   (Fisher et al., 2012) organism | faint & ubiquitous   (Fisher et al., 2012) posterior endoderm   (Fisher et al., 2012) ventral ectoderm   (Fisher et al., 2012) embryonic stage 9 -- 10   anterior endoderm   (Fisher et al., 2012) dorsal ectoderm   (Fisher et al., 2012) foregut primordium   (Fisher et al., 2012) inclusive hindgut primordium   (Fisher et al., 2012) organism | segmentally repeated   (Fisher et al., 2012) organism | faint & ubiquitous   (Fisher et al., 2012) posterior endoderm   (Fisher et al., 2012) ventral ectoderm   (Fisher et al., 2012) embryonic stage 11 -- 12   anterior midgut primordium   (Fisher et al., 2012) dorsal sensory complex primordium   (Fisher et al., 2012) foregut primordium   (Fisher et al., 2012) hindgut proper primordium   (Fisher et al., 2012) hypopharyngeal sense organ primordium   (Fisher et al., 2012) organism | segmentally repeated   (Fisher et al., 2012) organism | faint & ubiquitous   (Fisher et al., 2012) posterior midgut primordium   (Fisher et al., 2012) ventral sensory complex anlage   (Fisher et al., 2012) embryonic stage 13 -- 16   dorsal sensory complex proper primordium   (Fisher et al., 2012) Comment:reported as dorsal/lateral sensory complexes embryonic foregut   (Fisher et al., 2012) embryonic hindgut   (Fisher et al., 2012) embryonic/larval midgut   (Fisher et al., 2012) hypopharyngeal sense organ   (Fisher et al., 2012) organism | segmentally repeated   (Fisher et al., 2012) organism | faint & ubiquitous   (Fisher et al., 2012) ventral sensory complex primordium   (Fisher et al., 2012) northern blot Stage Tissue/Position (including subcellular localization) Reference embryonic stage -- adult stage     (Yanicostas et al., 1989) larval stage -- adult stage | male   organism   (Yanicostas et al., 1989) adult stage | male     (Yanicostas et al., 1989)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
Reporter: P{JA-310} Stage Tissue/Position (including subcellular localization) Reference embryonic stage 4 -- 12   organism | ubiquitous & uniform   (Yanicostas et al., 1995) third instar larval stage   gonad   (Yanicostas et al., 1995) embryonic/larval fat body | faint   (Yanicostas et al., 1995) embryonic/larval salivary gland   (Yanicostas et al., 1995) third instar larval stage | male   testis | intense   (Yanicostas et al., 1995) third instar larval stage | female   ovary | intense   (Yanicostas et al., 1995) adult stage & oogenesis   follicle cell   (Yanicostas et al., 1995) adult stageoogenesis stage S1 -- S7   oocyte   (Yanicostas et al., 1995) spermatogenesis & adult stage   testis   (Yanicostas et al., 1995) Reporter: P{JA-56} Stage Tissue/Position (including subcellular localization) Reference embryonic stage 4 -- 12   organism | ubiquitous & uniform   (Yanicostas et al., 1995) third instar larval stage   gonad   (Yanicostas et al., 1995) embryonic/larval fat body | faint   (Yanicostas et al., 1995) embryonic/larval salivary gland   (Yanicostas et al., 1995) third instar larval stage | male   testis | intense   (Yanicostas et al., 1995) third instar larval stage | female   ovary | intense   (Yanicostas et al., 1995) adult stage & oogenesis   follicle cell   (Yanicostas et al., 1995) adult stageoogenesis stage S1 -- S7   oocyte   (Yanicostas et al., 1995) nurse cell   (Yanicostas et al., 1995) spermatogenesis & adult stage   testis   (Yanicostas et al., 1995)
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: larval central nervous system, larval trachea, adult ovary, adult testis. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, adult spermathecae, adult male accessory gland, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    615.5 Larval Midgut    107.6 Larval Hindgut    205.1 Larval Malpighian Tubules    285.3 Larval Fat Body    364.6 Larval Salivary Gland    420.9 Larval Trachea    565.625 Larval Carcass    346.75 Adult Head    251.1 Adult Eye    287.575 Adult Brain    209.1 Adult Thoracic-Abdominal Ganglion    192.9 Adult Crop    376.4 Adult Midgut    172.8 Adult Hindgut    201.3 Adult Malpighian Tubules    224.7 Adult Fat Body    254.9 Adult Salivary Gland    294.1 Adult Heart    321.8 Adult VirginFemale Spermatheca    333.1 Adult InseminatedFemale Spermatheca    294.9 Adult Ovary    545.6 Adult Testis    1042.8 Adult Male Accessory Gland    267.4 Adult Carcass    241.8 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (615.5) Larval Midgut    107.6 Larval Hindgut    205.1 Larval Malpighian Tubules    285.3 Larval Fat Body    364.6 Larval Salivary Gland    420.9 Larval Trachea  (565.625) Larval Carcass    346.75 Adult Head    251.1 Adult Eye    287.575 Adult Brain    209.1 Adult Thoracic-Abdominal Ganglion    192.9 Adult Crop    376.4 Adult Midgut    172.8 Adult Hindgut    201.3 Adult Malpighian Tubules    224.7 Adult Fat Body    254.9 Adult Salivary Gland    294.1 Adult Heart    321.8 Adult VirginFemale Spermatheca    333.1 Adult InseminatedFemale Spermatheca    294.9 Adult Ovary  (545.6) Adult Testis  (1042.8) Adult Male Accessory Gland    267.4 Adult Carcass    241.8 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    615.5 Larval Midgut    107.6 Larval Hindgut    205.1 Larval Malpighian Tubules    285.3 Larval Fat Body    364.6 Larval Salivary Gland    420.9 Larval Trachea    565.625 Larval Carcass    346.75 Adult Head    251.1 Adult Eye    287.575 Adult Brain    209.1 Adult Thoracic-Abdominal Ganglion    192.9 Adult Crop    376.4 Adult Midgut    172.8 Adult Hindgut    201.3 Adult Malpighian Tubules    224.7 Adult Fat Body    254.9 Adult Salivary Gland    294.1 Adult Heart    321.8 Adult VirginFemale Spermatheca    333.1 Adult InseminatedFemale Spermatheca    294.9 Adult Ovary    545.6 Adult Testis  1042.8 Adult Male Accessory Gland    267.4 Adult Carcass    241.8 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    615.5 Larval Midgut    107.6 Larval Hindgut    205.1 Larval Malpighian Tubules    285.3 Larval Fat Body    364.6 Larval Salivary Gland    420.9 Larval Trachea    565.625 Larval Carcass    346.75 Adult Head    251.1 Adult Eye    287.575 Adult Brain    209.1 Adult Thoracic-Abdominal Ganglion    192.9 Adult Crop    376.4 Adult Midgut    172.8 Adult Hindgut    201.3 Adult Malpighian Tubules    224.7 Adult Fat Body    254.9 Adult Salivary Gland    294.1 Adult Heart    321.8 Adult VirginFemale Spermatheca    333.1 Adult InseminatedFemale Spermatheca    294.9 Adult Ovary    545.6 Adult Testis    1042.8 Adult Male Accessory Gland    267.4 Adult Carcass    241.8 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    615.5 Larval Midgut    107.6 Larval Hindgut    205.1 Larval Malpighian Tubules    285.3 Larval Fat Body    364.6 Larval Salivary Gland    420.9 Larval Trachea    565.625 Larval Carcass    346.75 Adult Head    251.1 Adult Eye    287.575 Adult Brain    209.1 Adult Thoracic-Abdominal Ganglion    192.9 Adult Crop    376.4 Adult Midgut    172.8 Adult Hindgut    201.3 Adult Malpighian Tubules    224.7 Adult Fat Body    254.9 Adult Salivary Gland    294.1 Adult Heart    321.8 Adult VirginFemale Spermatheca    333.1 Adult InseminatedFemale Spermatheca    294.9 Adult Ovary    545.6 Adult Testis    1042.8 Adult Male Accessory Gland    267.4 Adult Carcass    241.8 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  615.5 Larval Midgut    107.6 Larval Hindgut    205.1 Larval Malpighian Tubules    285.3 Larval Fat Body    364.6 Larval Salivary Gland    420.9 Larval Trachea  565.625 Larval Carcass    346.75 Adult Head    251.1 Adult Eye    287.575 Adult Brain    209.1 Adult Thoracic-Abdominal Ganglion    192.9 Adult Crop    376.4 Adult Midgut    172.8 Adult Hindgut    201.3 Adult Malpighian Tubules    224.7 Adult Fat Body    254.9 Adult Salivary Gland    294.1 Adult Heart    321.8 Adult VirginFemale Spermatheca    333.1 Adult InseminatedFemale Spermatheca    294.9 Adult Ovary  545.6 Adult Testis  (1042.8) Adult Male Accessory Gland    267.4 Adult Carcass    241.8 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    615.5 Larval Midgut    107.6 Larval Hindgut    205.1 Larval Malpighian Tubules    285.3 Larval Fat Body    364.6 Larval Salivary Gland    420.9 Larval Trachea    565.625 Larval Carcass    346.75 Adult Head    251.1 Adult Eye    287.575 Adult Brain    209.1 Adult Thoracic-Abdominal Ganglion    192.9 Adult Crop    376.4 Adult Midgut    172.8 Adult Hindgut    201.3 Adult Malpighian Tubules    224.7 Adult Fat Body    254.9 Adult Salivary Gland    294.1 Adult Heart    321.8 Adult VirginFemale Spermatheca    333.1 Adult InseminatedFemale Spermatheca    294.9 Adult Ovary    545.6 Adult Testis  1042.8 Adult Male Accessory Gland    267.4 Adult Carcass    241.8 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    615.5 Larval Midgut    107.6 Larval Hindgut    205.1 Larval Malpighian Tubules    285.3 Larval Fat Body    364.6 Larval Salivary Gland    420.9 Larval Trachea    565.625 Larval Carcass    346.75 Adult Head    251.1 Adult Eye    287.575 Adult Brain    209.1 Adult Thoracic-Abdominal Ganglion    192.9 Adult Crop    376.4 Adult Midgut    172.8 Adult Hindgut    201.3 Adult Malpighian Tubules    224.7 Adult Fat Body    254.9 Adult Salivary Gland    294.1 Adult Heart    321.8 Adult VirginFemale Spermatheca    333.1 Adult InseminatedFemale Spermatheca    294.9 Adult Ovary    545.6 Adult Testis    1042.8 Adult Male Accessory Gland    267.4 Adult Carcass    241.8 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    251.1   NA  Eye    287.575   NA  Brain    209.1   615.5  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    192.9   NA  Crop    376.4   107.6  Midgut    172.8   205.1  Hindgut    201.3   285.3  Malpighian Tubules    224.7   364.6  Fat Body    254.9   420.9  Salivary Gland    294.1   NA  Heart    321.8   565.625  Trachea    NA   NA  VirginFemale Spermatheca    333.1   NA  InseminatedFemale Spermatheca    294.9   NA  Ovary    545.6   NA  Testis    1042.8   NA  Male Accessory Gland    267.4   346.75  Carcass    241.8 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    202 central nervous system, larvae L3    122 central nervous system, pupae P8    56 head, virgin 1-day female    26 head, virgin 4-day female    30 head, virgin 20-day female    24 head, mated 1-day female    26 head, mated 4-day female    24 head, mated 20-day female    27 head, mated 1-day male    24 head, mated 4-day male    36 head, mated 20-day male    52 salivary gland, larvae L3 wandering    14 salivary gland, white prepupae    14 digestive system, larvae L3 wandering    41 digestive system, 1-day adult    29 digestive system, 4-day adult    38 digestive system, 20-day adult    27 fat body, larvae L3 wandering    21 fat body, white prepupae    51 fat body, pupae P8    54 carcass, larvae L3 wandering    99 carcass, 1-day adult    27 carcass, 4-day adult    31 carcass, 20-day adult    41 ovary, virgin 4-day female    147 ovary, mated 4-day female    137 testis, mated 4-day male    324 accessory gland, mated 4-day male    65 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (202) central nervous system, larvae L3  (122) central nervous system, pupae P8  (56) head, virgin 1-day female  26 head, virgin 4-day female  (30) head, virgin 20-day female    24 head, mated 1-day female  26 head, mated 4-day female    24 head, mated 20-day female  (27) head, mated 1-day male    24 head, mated 4-day male  (36) head, mated 20-day male  (52) salivary gland, larvae L3 wandering    14 salivary gland, white prepupae    14 digestive system, larvae L3 wandering  (41) digestive system, 1-day adult  (29) digestive system, 4-day adult  (38) digestive system, 20-day adult  (27) fat body, larvae L3 wandering    21 fat body, white prepupae  (51) fat body, pupae P8  (54) carcass, larvae L3 wandering  (99) carcass, 1-day adult  (27) carcass, 4-day adult  (31) carcass, 20-day adult  (41) ovary, virgin 4-day female  (147) ovary, mated 4-day female  (137) testis, mated 4-day male  (324) accessory gland, mated 4-day male  (65) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (202) central nervous system, larvae L3  (122) central nervous system, pupae P8    56 head, virgin 1-day female    26 head, virgin 4-day female    30 head, virgin 20-day female    24 head, mated 1-day female    26 head, mated 4-day female    24 head, mated 20-day female    27 head, mated 1-day male    24 head, mated 4-day male    36 head, mated 20-day male    52 salivary gland, larvae L3 wandering    14 salivary gland, white prepupae    14 digestive system, larvae L3 wandering    41 digestive system, 1-day adult    29 digestive system, 4-day adult    38 digestive system, 20-day adult    27 fat body, larvae L3 wandering    21 fat body, white prepupae    51 fat body, pupae P8    54 carcass, larvae L3 wandering    99 carcass, 1-day adult    27 carcass, 4-day adult    31 carcass, 20-day adult    41 ovary, virgin 4-day female  (147) ovary, mated 4-day female  (137) testis, mated 4-day male  (324) accessory gland, mated 4-day male    65 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    202 central nervous system, larvae L3    122 central nervous system, pupae P8    56 head, virgin 1-day female    26 head, virgin 4-day female    30 head, virgin 20-day female    24 head, mated 1-day female    26 head, mated 4-day female    24 head, mated 20-day female    27 head, mated 1-day male    24 head, mated 4-day male    36 head, mated 20-day male    52 salivary gland, larvae L3 wandering    14 salivary gland, white prepupae    14 digestive system, larvae L3 wandering    41 digestive system, 1-day adult    29 digestive system, 4-day adult    38 digestive system, 20-day adult    27 fat body, larvae L3 wandering    21 fat body, white prepupae    51 fat body, pupae P8    54 carcass, larvae L3 wandering    99 carcass, 1-day adult    27 carcass, 4-day adult    31 carcass, 20-day adult    41 ovary, virgin 4-day female    147 ovary, mated 4-day female    137 testis, mated 4-day male    324 accessory gland, mated 4-day male    65 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    202 central nervous system, larvae L3    122 central nervous system, pupae P8    56 head, virgin 1-day female    26 head, virgin 4-day female    30 head, virgin 20-day female    24 head, mated 1-day female    26 head, mated 4-day female    24 head, mated 20-day female    27 head, mated 1-day male    24 head, mated 4-day male    36 head, mated 20-day male    52 salivary gland, larvae L3 wandering    14 salivary gland, white prepupae    14 digestive system, larvae L3 wandering    41 digestive system, 1-day adult    29 digestive system, 4-day adult    38 digestive system, 20-day adult    27 fat body, larvae L3 wandering    21 fat body, white prepupae    51 fat body, pupae P8    54 carcass, larvae L3 wandering    99 carcass, 1-day adult    27 carcass, 4-day adult    31 carcass, 20-day adult    41 ovary, virgin 4-day female    147 ovary, mated 4-day female    137 testis, mated 4-day male    324 accessory gland, mated 4-day male    65 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (202) central nervous system, larvae L3  (122) central nervous system, pupae P8  (56) head, virgin 1-day female  26 head, virgin 4-day female  30 head, virgin 20-day female    24 head, mated 1-day female  26 head, mated 4-day female    24 head, mated 20-day female  27 head, mated 1-day male    24 head, mated 4-day male  (36) head, mated 20-day male  (52) salivary gland, larvae L3 wandering    14 salivary gland, white prepupae    14 digestive system, larvae L3 wandering  (41) digestive system, 1-day adult  29 digestive system, 4-day adult  (38) digestive system, 20-day adult  27 fat body, larvae L3 wandering    21 fat body, white prepupae  (51) fat body, pupae P8  (54) carcass, larvae L3 wandering  (99) carcass, 1-day adult  27 carcass, 4-day adult  31 carcass, 20-day adult  (41) ovary, virgin 4-day female  (147) ovary, mated 4-day female  (137) testis, mated 4-day male  (324) accessory gland, mated 4-day male  (65) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (202) central nervous system, larvae L3  122 central nervous system, pupae P8    56 head, virgin 1-day female    26 head, virgin 4-day female    30 head, virgin 20-day female    24 head, mated 1-day female    26 head, mated 4-day female    24 head, mated 20-day female    27 head, mated 1-day male    24 head, mated 4-day male    36 head, mated 20-day male    52 salivary gland, larvae L3 wandering    14 salivary gland, white prepupae    14 digestive system, larvae L3 wandering    41 digestive system, 1-day adult    29 digestive system, 4-day adult    38 digestive system, 20-day adult    27 fat body, larvae L3 wandering    21 fat body, white prepupae    51 fat body, pupae P8    54 carcass, larvae L3 wandering    99 carcass, 1-day adult    27 carcass, 4-day adult    31 carcass, 20-day adult    41 ovary, virgin 4-day female  (147) ovary, mated 4-day female  137 testis, mated 4-day male  (324) accessory gland, mated 4-day male    65 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    202 central nervous system, larvae L3    122 central nervous system, pupae P8    56 head, virgin 1-day female    26 head, virgin 4-day female    30 head, virgin 20-day female    24 head, mated 1-day female    26 head, mated 4-day female    24 head, mated 20-day female    27 head, mated 1-day male    24 head, mated 4-day male    36 head, mated 20-day male    52 salivary gland, larvae L3 wandering    14 salivary gland, white prepupae    14 digestive system, larvae L3 wandering    41 digestive system, 1-day adult    29 digestive system, 4-day adult    38 digestive system, 20-day adult    27 fat body, larvae L3 wandering    21 fat body, white prepupae    51 fat body, pupae P8    54 carcass, larvae L3 wandering    99 carcass, 1-day adult    27 carcass, 4-day adult    31 carcass, 20-day adult    41 ovary, virgin 4-day female    147 ovary, mated 4-day female    137 testis, mated 4-day male    324 accessory gland, mated 4-day male    65 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    90 embryo 02-04hr    155 embryo 04-06hr    202 embryo 06-08hr    124 embryo 08-10hr    83 embryo 10-12hr    58 embryo 12-14hr    51 embryo 14-16hr    30 embryo 16-18hr    26 embryo 18-20hr    14 embryo 20-22hr    20 embryo 22-24hr    23 larva L1    19 larva L2    43 larva L3 12hr old    33 larva L3 puffstage 1-2    41 larva L3 puffstage 3-6    46 larva L3 puffstage 7-9    64 white prepupae new    61 white prepupae 12hr    55 white prepupae 24hr    81 pupae 2d postWPP    70 pupae 3d postWPP    67 pupae 4d postWPP    42 adult male 01day    63 adult male 05day    70 adult male 30day    65 adult female 01day    40 adult female 05day    77 adult female 30day    69 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (90) embryo 02-04hr  (155) embryo 04-06hr  (202) embryo 06-08hr  (124) embryo 08-10hr  (83) embryo 10-12hr  (58) embryo 12-14hr  (51) embryo 14-16hr  (30) embryo 16-18hr  26 embryo 18-20hr    14 embryo 20-22hr    20 embryo 22-24hr    23 larva L1    19 larva L2  (43) larva L3 12hr old  (33) larva L3 puffstage 1-2  (41) larva L3 puffstage 3-6  (46) larva L3 puffstage 7-9  (64) white prepupae new  (61) white prepupae 12hr  (55) white prepupae 24hr  (81) pupae 2d postWPP  (70) pupae 3d postWPP  (67) pupae 4d postWPP  (42) adult male 01day  (63) adult male 05day  (70) adult male 30day  (65) adult female 01day  (40) adult female 05day  (77) adult female 30day  (69) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    90 embryo 02-04hr  (155) embryo 04-06hr  (202) embryo 06-08hr  (124) embryo 08-10hr    83 embryo 10-12hr    58 embryo 12-14hr    51 embryo 14-16hr    30 embryo 16-18hr    26 embryo 18-20hr    14 embryo 20-22hr    20 embryo 22-24hr    23 larva L1    19 larva L2    43 larva L3 12hr old    33 larva L3 puffstage 1-2    41 larva L3 puffstage 3-6    46 larva L3 puffstage 7-9    64 white prepupae new    61 white prepupae 12hr    55 white prepupae 24hr    81 pupae 2d postWPP    70 pupae 3d postWPP    67 pupae 4d postWPP    42 adult male 01day    63 adult male 05day    70 adult male 30day    65 adult female 01day    40 adult female 05day    77 adult female 30day    69 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    90 embryo 02-04hr    155 embryo 04-06hr    202 embryo 06-08hr    124 embryo 08-10hr    83 embryo 10-12hr    58 embryo 12-14hr    51 embryo 14-16hr    30 embryo 16-18hr    26 embryo 18-20hr    14 embryo 20-22hr    20 embryo 22-24hr    23 larva L1    19 larva L2    43 larva L3 12hr old    33 larva L3 puffstage 1-2    41 larva L3 puffstage 3-6    46 larva L3 puffstage 7-9    64 white prepupae new    61 white prepupae 12hr    55 white prepupae 24hr    81 pupae 2d postWPP    70 pupae 3d postWPP    67 pupae 4d postWPP    42 adult male 01day    63 adult male 05day    70 adult male 30day    65 adult female 01day    40 adult female 05day    77 adult female 30day    69 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    90 embryo 02-04hr    155 embryo 04-06hr    202 embryo 06-08hr    124 embryo 08-10hr    83 embryo 10-12hr    58 embryo 12-14hr    51 embryo 14-16hr    30 embryo 16-18hr    26 embryo 18-20hr    14 embryo 20-22hr    20 embryo 22-24hr    23 larva L1    19 larva L2    43 larva L3 12hr old    33 larva L3 puffstage 1-2    41 larva L3 puffstage 3-6    46 larva L3 puffstage 7-9    64 white prepupae new    61 white prepupae 12hr    55 white prepupae 24hr    81 pupae 2d postWPP    70 pupae 3d postWPP    67 pupae 4d postWPP    42 adult male 01day    63 adult male 05day    70 adult male 30day    65 adult female 01day    40 adult female 05day    77 adult female 30day    69 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (90) embryo 02-04hr  (155) embryo 04-06hr  (202) embryo 06-08hr  (124) embryo 08-10hr  (83) embryo 10-12hr  (58) embryo 12-14hr  (51) embryo 14-16hr  30 embryo 16-18hr  26 embryo 18-20hr    14 embryo 20-22hr    20 embryo 22-24hr    23 larva L1    19 larva L2  (43) larva L3 12hr old  (33) larva L3 puffstage 1-2  (41) larva L3 puffstage 3-6  (46) larva L3 puffstage 7-9  (64) white prepupae new  (61) white prepupae 12hr  (55) white prepupae 24hr  (81) pupae 2d postWPP  (70) pupae 3d postWPP  (67) pupae 4d postWPP  (42) adult male 01day  (63) adult male 05day  (70) adult male 30day  (65) adult female 01day  (40) adult female 05day  (77) adult female 30day  (69) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    90 embryo 02-04hr  (155) embryo 04-06hr  (202) embryo 06-08hr  124 embryo 08-10hr    83 embryo 10-12hr    58 embryo 12-14hr    51 embryo 14-16hr    30 embryo 16-18hr    26 embryo 18-20hr    14 embryo 20-22hr    20 embryo 22-24hr    23 larva L1    19 larva L2    43 larva L3 12hr old    33 larva L3 puffstage 1-2    41 larva L3 puffstage 3-6    46 larva L3 puffstage 7-9    64 white prepupae new    61 white prepupae 12hr    55 white prepupae 24hr    81 pupae 2d postWPP    70 pupae 3d postWPP    67 pupae 4d postWPP    42 adult male 01day    63 adult male 05day    70 adult male 30day    65 adult female 01day    40 adult female 05day    77 adult female 30day    69 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    90 embryo 02-04hr    155 embryo 04-06hr    202 embryo 06-08hr    124 embryo 08-10hr    83 embryo 10-12hr    58 embryo 12-14hr    51 embryo 14-16hr    30 embryo 16-18hr    26 embryo 18-20hr    14 embryo 20-22hr    20 embryo 22-24hr    23 larva L1    19 larva L2    43 larva L3 12hr old    33 larva L3 puffstage 1-2    41 larva L3 puffstage 3-6    46 larva L3 puffstage 7-9    64 white prepupae new    61 white prepupae 12hr    55 white prepupae 24hr    81 pupae 2d postWPP    70 pupae 3d postWPP    67 pupae 4d postWPP    42 adult male 01day    63 adult male 05day    70 adult male 30day    65 adult female 01day    40 adult female 05day    77 adult female 30day    69 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    197 Schneider line 2 Sg4    192 embryonic 1182-4H    100 embryonic GM2    62 embryonic Kc167    172 embryonic S1    126 embryonic S3    226 leg disc CME L1    197 wing disc CME-W2    361 wing disc ML-DmD8    202 wing disc ML-DmD9    131 wing disc ML-DmD16-c3    147 wing disc ML-DmD21    220 wing disc ML-DmD32    156 haltere disc ML-DmD17-c3    155 eye-antennal disc ML-DmD11    218 antennal disc ML-DmD20-c5    277 mixed discs ML-DmD4-c1    178 CNS ML-DmBG1-c1    266 CNS ML-DmBG2-c2    164 tumorous blood cells mbn2    132 ovary fGS/OSS    52 ovary OSC    110 ovary OSS    54 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (197) Schneider line 2 Sg4  (192) embryonic 1182-4H  (100) embryonic GM2  (62) embryonic Kc167  (172) embryonic S1  (126) embryonic S3  (226) leg disc CME L1  (197) wing disc CME-W2  (361) wing disc ML-DmD8  (202) wing disc ML-DmD9  (131) wing disc ML-DmD16-c3  (147) wing disc ML-DmD21  (220) wing disc ML-DmD32  (156) haltere disc ML-DmD17-c3  (155) eye-antennal disc ML-DmD11  (218) antennal disc ML-DmD20-c5  (277) mixed discs ML-DmD4-c1  (178) CNS ML-DmBG1-c1  (266) CNS ML-DmBG2-c2  (164) tumorous blood cells mbn2  (132) ovary fGS/OSS  (52) ovary OSC  (110) ovary OSS  (54) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  (197) Schneider line 2 Sg4  (192) embryonic 1182-4H    100 embryonic GM2    62 embryonic Kc167  (172) embryonic S1  (126) embryonic S3  (226) leg disc CME L1  (197) wing disc CME-W2  (361) wing disc ML-DmD8  (202) wing disc ML-DmD9  (131) wing disc ML-DmD16-c3  (147) wing disc ML-DmD21  (220) wing disc ML-DmD32  (156) haltere disc ML-DmD17-c3  (155) eye-antennal disc ML-DmD11  (218) antennal disc ML-DmD20-c5  (277) mixed discs ML-DmD4-c1  (178) CNS ML-DmBG1-c1  (266) CNS ML-DmBG2-c2  (164) tumorous blood cells mbn2  (132) ovary fGS/OSS    52 ovary OSC  (110) ovary OSS    54 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    197 Schneider line 2 Sg4    192 embryonic 1182-4H    100 embryonic GM2    62 embryonic Kc167    172 embryonic S1    126 embryonic S3    226 leg disc CME L1    197 wing disc CME-W2    361 wing disc ML-DmD8    202 wing disc ML-DmD9    131 wing disc ML-DmD16-c3    147 wing disc ML-DmD21    220 wing disc ML-DmD32    156 haltere disc ML-DmD17-c3    155 eye-antennal disc ML-DmD11    218 antennal disc ML-DmD20-c5    277 mixed discs ML-DmD4-c1    178 CNS ML-DmBG1-c1    266 CNS ML-DmBG2-c2    164 tumorous blood cells mbn2    132 ovary fGS/OSS    52 ovary OSC    110 ovary OSS    54 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    197 Schneider line 2 Sg4    192 embryonic 1182-4H    100 embryonic GM2    62 embryonic Kc167    172 embryonic S1    126 embryonic S3    226 leg disc CME L1    197 wing disc CME-W2    361 wing disc ML-DmD8    202 wing disc ML-DmD9    131 wing disc ML-DmD16-c3    147 wing disc ML-DmD21    220 wing disc ML-DmD32    156 haltere disc ML-DmD17-c3    155 eye-antennal disc ML-DmD11    218 antennal disc ML-DmD20-c5    277 mixed discs ML-DmD4-c1    178 CNS ML-DmBG1-c1    266 CNS ML-DmBG2-c2    164 tumorous blood cells mbn2    132 ovary fGS/OSS    52 ovary OSC    110 ovary OSS    54 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (197) Schneider line 2 Sg4  (192) embryonic 1182-4H  (100) embryonic GM2  (62) embryonic Kc167  (172) embryonic S1  (126) embryonic S3  (226) leg disc CME L1  (197) wing disc CME-W2  (361) wing disc ML-DmD8  (202) wing disc ML-DmD9  (131) wing disc ML-DmD16-c3  (147) wing disc ML-DmD21  (220) wing disc ML-DmD32  (156) haltere disc ML-DmD17-c3  (155) eye-antennal disc ML-DmD11  (218) antennal disc ML-DmD20-c5  (277) mixed discs ML-DmD4-c1  (178) CNS ML-DmBG1-c1  (266) CNS ML-DmBG2-c2  (164) tumorous blood cells mbn2  (132) ovary fGS/OSS  (52) ovary OSC  (110) ovary OSS  (54) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  (197) Schneider line 2 Sg4  (192) embryonic 1182-4H    100 embryonic GM2    62 embryonic Kc167  (172) embryonic S1  126 embryonic S3  (226) leg disc CME L1  (197) wing disc CME-W2  (361) wing disc ML-DmD8  (202) wing disc ML-DmD9  131 wing disc ML-DmD16-c3  (147) wing disc ML-DmD21  (220) wing disc ML-DmD32  (156) haltere disc ML-DmD17-c3  (155) eye-antennal disc ML-DmD11  (218) antennal disc ML-DmD20-c5  (277) mixed discs ML-DmD4-c1  (178) CNS ML-DmBG1-c1  (266) CNS ML-DmBG2-c2  (164) tumorous blood cells mbn2  132 ovary fGS/OSS    52 ovary OSC  110 ovary OSS    54 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    197 Schneider line 2 Sg4    192 embryonic 1182-4H    100 embryonic GM2    62 embryonic Kc167    172 embryonic S1    126 embryonic S3    226 leg disc CME L1    197 wing disc CME-W2    361 wing disc ML-DmD8    202 wing disc ML-DmD9    131 wing disc ML-DmD16-c3    147 wing disc ML-DmD21    220 wing disc ML-DmD32    156 haltere disc ML-DmD17-c3    155 eye-antennal disc ML-DmD11    218 antennal disc ML-DmD20-c5    277 mixed discs ML-DmD4-c1    178 CNS ML-DmBG1-c1    266 CNS ML-DmBG2-c2    164 tumorous blood cells mbn2    132 ovary fGS/OSS    52 ovary OSC    110 ovary OSS    54 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    33 cold shock, 4-day adult    20 heat shock, 4-day adult    84 Cadmium 50 mM 6 hrs, larvae L3    68 Cadmium 50 mM 12 hrs, larvae L3    105 Cadmium 50 mM 48 hrs, 4-day adult    88 Cadmium 100 mM 48 hrs, 4-day adult    120 Copper 0.5 mM 12 hrs, larvae L3    30 Copper 15 mM 48 hrs, 4-day adult    102 Zinc 5 mM 12 hrs, larvae L3    28 Zinc 4.5 mM 48 hrs, 4-day adult    71 Ethanol 2.5% 3 hrs, larvae L3    97 Ethanol 5% 3 hrs, larvae L3    84 Ethanol 10% 3 hrs, larvae L3    52 Caffeine 1.5 mg/ml 4 hrs, larvae L3    64 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    124 Caffeine 25 mg/ml 48 hrs, 4-day adult    44 Paraquat 5 mM 48 hrs, 4-day adult    119 Paraquat 10 mM 48 hrs, 4-day adult    99 Rotenone 2 μg 12 hrs, larvae L3    78 Rotenone 8 μg 12 hrs, larvae L3    51 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (33) cold shock, 4-day adult    20 heat shock, 4-day adult  (84) Cadmium 50 mM 6 hrs, larvae L3  (68) Cadmium 50 mM 12 hrs, larvae L3  (105) Cadmium 50 mM 48 hrs, 4-day adult  (88) Cadmium 100 mM 48 hrs, 4-day adult  (120) Copper 0.5 mM 12 hrs, larvae L3  (30) Copper 15 mM 48 hrs, 4-day adult  (102) Zinc 5 mM 12 hrs, larvae L3  (28) Zinc 4.5 mM 48 hrs, 4-day adult  (71) Ethanol 2.5% 3 hrs, larvae L3  (97) Ethanol 5% 3 hrs, larvae L3  (84) Ethanol 10% 3 hrs, larvae L3  (52) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (64) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (124) Caffeine 25 mg/ml 48 hrs, 4-day adult  (44) Paraquat 5 mM 48 hrs, 4-day adult  (119) Paraquat 10 mM 48 hrs, 4-day adult  (99) Rotenone 2 μg 12 hrs, larvae L3  (78) Rotenone 8 μg 12 hrs, larvae L3  (51) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    33 cold shock, 4-day adult    20 heat shock, 4-day adult    84 Cadmium 50 mM 6 hrs, larvae L3    68 Cadmium 50 mM 12 hrs, larvae L3  105 Cadmium 50 mM 48 hrs, 4-day adult    88 Cadmium 100 mM 48 hrs, 4-day adult  (120) Copper 0.5 mM 12 hrs, larvae L3    30 Copper 15 mM 48 hrs, 4-day adult  102 Zinc 5 mM 12 hrs, larvae L3    28 Zinc 4.5 mM 48 hrs, 4-day adult    71 Ethanol 2.5% 3 hrs, larvae L3    97 Ethanol 5% 3 hrs, larvae L3    84 Ethanol 10% 3 hrs, larvae L3    52 Caffeine 1.5 mg/ml 4 hrs, larvae L3    64 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (124) Caffeine 25 mg/ml 48 hrs, 4-day adult    44 Paraquat 5 mM 48 hrs, 4-day adult  (119) Paraquat 10 mM 48 hrs, 4-day adult    99 Rotenone 2 μg 12 hrs, larvae L3    78 Rotenone 8 μg 12 hrs, larvae L3    51 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    33 cold shock, 4-day adult    20 heat shock, 4-day adult    84 Cadmium 50 mM 6 hrs, larvae L3    68 Cadmium 50 mM 12 hrs, larvae L3    105 Cadmium 50 mM 48 hrs, 4-day adult    88 Cadmium 100 mM 48 hrs, 4-day adult    120 Copper 0.5 mM 12 hrs, larvae L3    30 Copper 15 mM 48 hrs, 4-day adult    102 Zinc 5 mM 12 hrs, larvae L3    28 Zinc 4.5 mM 48 hrs, 4-day adult    71 Ethanol 2.5% 3 hrs, larvae L3    97 Ethanol 5% 3 hrs, larvae L3    84 Ethanol 10% 3 hrs, larvae L3    52 Caffeine 1.5 mg/ml 4 hrs, larvae L3    64 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    124 Caffeine 25 mg/ml 48 hrs, 4-day adult    44 Paraquat 5 mM 48 hrs, 4-day adult    119 Paraquat 10 mM 48 hrs, 4-day adult    99 Rotenone 2 μg 12 hrs, larvae L3    78 Rotenone 8 μg 12 hrs, larvae L3    51 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    33 cold shock, 4-day adult    20 heat shock, 4-day adult    84 Cadmium 50 mM 6 hrs, larvae L3    68 Cadmium 50 mM 12 hrs, larvae L3    105 Cadmium 50 mM 48 hrs, 4-day adult    88 Cadmium 100 mM 48 hrs, 4-day adult    120 Copper 0.5 mM 12 hrs, larvae L3    30 Copper 15 mM 48 hrs, 4-day adult    102 Zinc 5 mM 12 hrs, larvae L3    28 Zinc 4.5 mM 48 hrs, 4-day adult    71 Ethanol 2.5% 3 hrs, larvae L3    97 Ethanol 5% 3 hrs, larvae L3    84 Ethanol 10% 3 hrs, larvae L3    52 Caffeine 1.5 mg/ml 4 hrs, larvae L3    64 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    124 Caffeine 25 mg/ml 48 hrs, 4-day adult    44 Paraquat 5 mM 48 hrs, 4-day adult    119 Paraquat 10 mM 48 hrs, 4-day adult    99 Rotenone 2 μg 12 hrs, larvae L3    78 Rotenone 8 μg 12 hrs, larvae L3    51 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (33) cold shock, 4-day adult    20 heat shock, 4-day adult  (84) Cadmium 50 mM 6 hrs, larvae L3  (68) Cadmium 50 mM 12 hrs, larvae L3  (105) Cadmium 50 mM 48 hrs, 4-day adult  (88) Cadmium 100 mM 48 hrs, 4-day adult  (120) Copper 0.5 mM 12 hrs, larvae L3  30 Copper 15 mM 48 hrs, 4-day adult  (102) Zinc 5 mM 12 hrs, larvae L3  28 Zinc 4.5 mM 48 hrs, 4-day adult  (71) Ethanol 2.5% 3 hrs, larvae L3  (97) Ethanol 5% 3 hrs, larvae L3  (84) Ethanol 10% 3 hrs, larvae L3  (52) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (64) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (124) Caffeine 25 mg/ml 48 hrs, 4-day adult  (44) Paraquat 5 mM 48 hrs, 4-day adult  (119) Paraquat 10 mM 48 hrs, 4-day adult  (99) Rotenone 2 μg 12 hrs, larvae L3  (78) Rotenone 8 μg 12 hrs, larvae L3  (51) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    33 cold shock, 4-day adult    20 heat shock, 4-day adult    84 Cadmium 50 mM 6 hrs, larvae L3    68 Cadmium 50 mM 12 hrs, larvae L3  105 Cadmium 50 mM 48 hrs, 4-day adult    88 Cadmium 100 mM 48 hrs, 4-day adult  120 Copper 0.5 mM 12 hrs, larvae L3    30 Copper 15 mM 48 hrs, 4-day adult  102 Zinc 5 mM 12 hrs, larvae L3    28 Zinc 4.5 mM 48 hrs, 4-day adult    71 Ethanol 2.5% 3 hrs, larvae L3    97 Ethanol 5% 3 hrs, larvae L3    84 Ethanol 10% 3 hrs, larvae L3    52 Caffeine 1.5 mg/ml 4 hrs, larvae L3    64 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  124 Caffeine 25 mg/ml 48 hrs, 4-day adult    44 Paraquat 5 mM 48 hrs, 4-day adult  119 Paraquat 10 mM 48 hrs, 4-day adult    99 Rotenone 2 μg 12 hrs, larvae L3    78 Rotenone 8 μg 12 hrs, larvae L3    51 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    33 cold shock, 4-day adult    20 heat shock, 4-day adult    84 Cadmium 50 mM 6 hrs, larvae L3    68 Cadmium 50 mM 12 hrs, larvae L3    105 Cadmium 50 mM 48 hrs, 4-day adult    88 Cadmium 100 mM 48 hrs, 4-day adult    120 Copper 0.5 mM 12 hrs, larvae L3    30 Copper 15 mM 48 hrs, 4-day adult    102 Zinc 5 mM 12 hrs, larvae L3    28 Zinc 4.5 mM 48 hrs, 4-day adult    71 Ethanol 2.5% 3 hrs, larvae L3    97 Ethanol 5% 3 hrs, larvae L3    84 Ethanol 10% 3 hrs, larvae L3    52 Caffeine 1.5 mg/ml 4 hrs, larvae L3    64 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    124 Caffeine 25 mg/ml 48 hrs, 4-day adult    44 Paraquat 5 mM 48 hrs, 4-day adult    119 Paraquat 10 mM 48 hrs, 4-day adult    99 Rotenone 2 μg 12 hrs, larvae L3    78 Rotenone 8 μg 12 hrs, larvae L3    51 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_06 mE1_20_mRNA_expression_cluster_02
External Data & Images
Linkouts	BDGP expression data • GH10196 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0001280 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG7933-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 janAGD10614 Phenotype manifest in Allele
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of janA Class Mutagen Stocks Known lesion janAA392 1 --
Alleles Carried on Transgenic Constructs ( 9 )
For All Alleles Carried on Transgenic Constructs Show
Allele of janA Class Mutagen Stocks Known lesion janAGD10614 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes janAGL01274 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes janAKK109405 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes janACH8 in vitro construct - genomic fragment 0 Yes janAJBβH in vitro construct - coding region fusion 0 Yes janAJBβS in vitro construct - coding region fusion 0 Yes janAJBβSX in vitro construct - coding region fusion 0 Yes janAJBβX in vitro construct 0 Yes janAt2.5 in vitro construct - genomic fragment 0 Yes
Aneuploid Aberrations
Disrupted in	Df(3R)X3F (Schweisguth et al., 1990)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD10614} NA P{KK109405} NA P{TRiP.GL01274} NA reporter construct P{JA-56} No P{JA-175} No P{JA-310} No characterization construct P{JBβH} NA P{JBβS} NA P{JBβSX} NA P{JBβX} NA P{sryβ} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions PBac{5HPw+}janAA392 NA
Gene Ontology: Function, Process & Cellular Component ( 1 unique term )
	There is no information supporting a cellular component or molecular function term for this gene. (Based on a review of available data before: 2006)
Terms Based on Experimental Evidence ( 1 term )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
sex differentiation inferred from expression pattern (assigned by UniProtKB) (Yanicostas et al., 1989)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
janA - aur anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions janA allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 68425 DroID - A comprehensive database of gene and protein interactions. • FBgn0001280 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 43569
Orthologs
OrthoDB Orthologs (38) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6BZNP6 Dipteran inclusive ortholog search EOG6FTW92 Insect inclusive ortholog search EOG6SJ4C4 Arthropod inclusive ortholog search EOG6KSN32 Metazoa inclusive ortholog search EOG6FRCNX
Orthologs in Drosophila Species (EOG6BZNP6)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\janA     Drosophila simulans   Dsim\janA Y   Drosophila sechellia   Dsec\janA Y   Drosophila erecta   Dere\janA Y   Drosophila yakuba   Dyak\janA Y   Drosophila ananassae   Dana\GF23241 Y   Drosophila pseudoobscura pseudoobscura   Dpse\janA Y   Drosophila persimilis   Dper\GL13482 Y   Drosophila willistoni   Dwil\GK13425 Y   Drosophila virilis   Dvir\GJ10386 Y   Drosophila mojavensis   Dmoj\GI23391 Y   Drosophila grimshawi   Dgri\GH18401 Y
Orthologs in non-Drosophila Dipterans (EOG6FTW92)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL004350   Anopheles gambiae Malaria mosquito  Agam\AGAP002078   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ008917
Orthologs in non-Dipteran Insects (EOG6SJ4C4)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB49097   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG019927   Atta cephalotes Leafcutter ant  Acep\ACEP20639   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL12774   Linepithema humile Argentine ant  Lhum\LH12637   Pogonomyrmex barbatus Red harvester ant  Pbar\PB19705   Acyrthosiphon pisum Pea aphid  Apim\ACYPI010104   Bombyx mori Silkmoth  Bmor\BGIBMGA013493   Pediculus humanus Human body louse  Phum\PHUM448250   Tribolium castaneum Red flour beetle  Tcas\TC001359
Orthologs in non-Insect Arthropods (EOG6KSN32)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_299626   Ixodes scapularis Deer tick  Isca\ISCW016162   Ixodes scapularis Deer tick  Isca\ISCW016163
Orthologs in non-Arthropod Metazoa (EOG6FRCNX)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\phip-1 Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_009388gn Y Danio rerio Zebrafish  Drer\si:dkey-51e6.1 Y Xenopus tropicalis Western clawed frog  Xtro\phpt1 Y Xenopus tropicalis Western clawed frog  Xtro\ENSXETG00000004740 Y Gallus gallus Domestic chicken  Ggal\PHPT1 Y Gallus gallus Domestic chicken  Ggal\PHPT1 Y Mus musculus House mouse  Mmus\Phpt1 Y Rattus norvegicus Norway rat  Rnor\Phpt1 Y Homo sapiens Human  Hsap\ENSG00000054148 Y
Human Orthologs (1)
Gene OMIM HGNC Hsap\ENSG00000054148
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\janA Drosophila sechellia Dsec\janA Drosophila erecta Dere\janA Drosophila yakuba Dyak\janA Drosophila ananassae Dana\GF23241 Drosophila pseudoobscura pseudoobscura Dpse\janA Drosophila persimilis Dper\GL13482 Drosophila willistoni Dwil\GK13425 Drosophila virilis Dvir\GJ10386 Drosophila mojavensis Dmoj\GI23391 Drosophila grimshawi Dgri\GH18401
Stocks & Reagents
Stocks Listed in FlyBase ( 5 )
Bloomington	41846 y1 v1; P{TRiP.GL01274}attP2/TM3, Sb1 16106 y1 w1118; PBac{5HPw+}janAA392
VDRC	v101392 P{KK109405}VIE-260B v21578 w1118; P{GD10614}v21578 v21579 w1118; P{GD10614}v21579
Genomic Clones ( 1 )
	BACR07A18 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 37 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	AT12574 GH10196
Other clones	FI13730
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT05309 AT06168 AT11281 GH07392 LP02384 LP08477 RE08244 RE10962 RE18992 RE62341 RE62941 RE68466 RH23378 RH23681 RH36450
Other clones	bs30f02 CK01.64C.H11 Dmel_dig_003127_0596_0645 Dmel_neb_008945_0872_1884 EK053424 FGC016F07 FGM101H11 RP004107770 RP004181200 RP004210007 RP004215163 RP004216013 RP004222834 RP004260953 RP004289010 RP004382354 RP004488436 RP004499970 RP004524367
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0001280 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 43569
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: janA BcDNA:AT12574 (FlyBase, 1996-)
Additional comments	Source for merge of janA BcDNA:AT12574 was shared cDNA (AT12574) (date:030530). (FlyBase, 1996-)
Other Comments
	Expression is enriched in embryonic gonads. (Shigenobu et al., 2006) The molecular organization of the 'rp49-Sry-jan' gene cluster, including gene order, direction of transcription and partial overlap of the janA and janB genes is strictly conserved between D.melanogaster and D.pseudoobscura.pseudoobscura. In D.melanogaster the translation initiation codons of the divergently transcribed Sry-β and janA are separated by only 378bp, whereas the corresponding distance is only 176bp in D.pseudoobscura.pseudoobscura. Promoter analysis reveals that despite the physical proximity of the two genes, their transcription is regulated by separate cis-acting sequences. (Yanicostas et al., 1995) Analysis of the expression of a number of janB-Ecol\lacZ constructs shows that the testis-specific expression of janB is mediated by a short DNA sequence (from -174 to +107bp) that is located entirely within the last exon of the upstream, partially overlapping, janA gene. The presence in cis of an active janA gene leads to a reduced accumulation of janB-Ecol\lacZ hybrid RNA, supporting the hypothesis that janA transcription interferes with the function of the janB cis-regulatory elements. (Yanicostas and Lepesant, 1990) janA and janB, two partially overlapping genes transcribed in the same direction, have been cloned and sequenced, and their expression patterns have been analysed. (Yanicostas et al., 1989) One of two partially overlapping genes, janA and janB, regulate the expression of somatic sex differentiation. janA is expressed in a complex way in both males and females; janB is only expressed in males (Yanicostas, Vincent and Lepesant, 1989).
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_176585 NM_176586 NM_206588 RefSeq (Proteins) • NP_788762 NP_788763 NP_996311 DDBJ / EMBL / GenBank • AAC34202 AAC34203 AAL90058 AAN14209 AAO41613 AAS65231 AC007886 AY089320 BF498200 M27033 Entrez Gene - A searchable database of RefSeq genes. • 43569 UniProtKB/Swiss-Prot • P20348
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Janus/Ocnus (IPR007702) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • GH10196
Linkouts
	BioGRID - A database of protein and genetic interactions • 68425 DroID - A comprehensive database of gene and protein interactions. • FBgn0001280 DRSC - Results from RNAi screens. • FBgn0001280 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0001280 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG7933-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0001280 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 43569 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 43569 modMine - Data generated by the modENCODE project. • FBgn0001280 REDfly - A database of transcriptional regulatory elements. • FBgn0001280
Synonyms & Secondary IDs ( 9 )
Reported As
Symbol Synonym	BcDNA:AT12574   CG7933 (Keleman et al., 2009.8.5, Ni et al., 2010.12.1) jan (Civetta and Singh, 1998) Jan (Schweisguth et al., 1990) jan A (Crozatier et al., 1992) janA (Shigenobu et al., 2006, Jiang et al., 2009) janus (Andolfatto, 2001, McDermott and Kliman, 2008, Noor and Kliman, 2003) Y (Vincent et al., 1985, Vincent et al., 1984, )
Name Synonym	janus (Emberly et al., 2008) janus A
Secondary FlyBase IDs
	FBgn0063739
References ( 48 )
Generate a list of	All references relating to this gene ( 48 )
List References by type	Research paper  ( 22 ) Supplementary material  ( 4 ) Personal communication to FlyBase  ( 8 ) Abstract  ( 5 ) FlyBase analysis  ( 3 ) Website  ( 1 ) Book  ( 1 ) DNA/RNA sequence record  ( 4 )
Recent research papers (0)
	All research papers listed in FlyBase were published before 2011 Show research papers ...