A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Gene Dmel\kto

General Information
SymbolDmel\ktoSpeciesD. melanogaster
NamekohtaloAnnotation symbolCG8491
Feature typeprotein_coding_geneFlyBase IDFBgn0001324
Gene Model StatusCurrent Stock availability 6 publicly available
Also Known AsMED12, dTRAP230, Trap230
Genomic Location
Chromosome (arm)3LRecombination map3-46
Cytogenetic map76D1-76D1Sequence location3L:19,829,714..19,838,044 [+]

Genomic Maps

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Automatically generated summary

See sections below for more information
The gene kohtalo is referred to in FlyBase by the symbol Dmel\kto (CG8491, FBgn0001324). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: protein binding; RNA polymerase II transcription cofactor activity. There is experimental evidence that it is involved in the biological process: chaeta development; positive regulation of Wnt receptor signaling pathway; compound eye development; sex comb development; imaginal disc-derived leg segmentation; regulation of transcription from RNA polymerase II promoter. 22 alleles are reported. The phenotypes of these alleles are annotated with: wing margin; eye disc; trichogen cell; antennal disc; photoreceptor cell; heart primordium; mesothoracic tergum. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Mediator complex, subunit Med12; Mediator complex, subunit Med12, LCEWAV-domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-12 hour embryonic stages, during early pupal stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, adult testis. Comments on Affy2 ProbeSet: ProbeSet 1628801_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of kto. Gene sequence location is 3L:19829714..19838044.

hide Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
Gene/Allele symbols may differ from current usage
kto: kohtalo (J.A. Kennison)
Isolated as a dominant suppressor of Pc mutations. Also suppresses Pcl alleles as well as Msc, Mrt, and AntpScx. Associated with recessive larval lethality.
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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FB2012_01
Sequence features
Controlled Vocabulary Terms
FB2011_10
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
76D1-76D1  
Limits computationally determined from genome sequence between P{lacW}l(3)L3809L3809 and P{lacW}l(3)L1243L1243&P{lacW}Mi-2j3D4  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
76D1-76D1  
76B-76D  
Location from complementation analysis with deficiency and duplication chromosomes (details unspecified).  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\kto for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0301008 FBtr0074884 FBtr0304716 FBtr0074885 FBtr0111108 FBtr0074887 FBtr0074886 FBpp0290230 FBpp0074653 FBpp0293259 FBpp0074654 FBpp0074655 FBpp0074656 FBti0038877 FBti0103251 FBti0047431 FBti0126637 FBti0125813_2 FBti0037790 FBti0125813_1
Comments on Gene Model
DGC clone appears problematic (SD08305): incomplete CDS
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0074884
  7740
  2531
FBtr0304716
 
  1723
  534
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
kto-PA  
FBpp0074653  
279.5  
2531  
7.60  
kto-PB  
FBpp0293259  
58.0  
534  
12.01  
 
 
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hidePolypeptide Expression
immunolocalization
Stage
Tissue/Position (including subcellular localization)
Reference
mass spectroscopy
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hide High-Throughput Expression Data
or
Untitled Document detailed view CG32221-RB kto-RA kto-RB Papss-RB Papss-RF Papss-RA Papss-RC
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

modENCODE Temporal Expression Data for FBgn0001324


   Styles
Linear
Logarithmic
Heatmap
   Scales
max expr for FBgn0001324
Very low expression bin max
Moderate expression bin max
High expression bin max
Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-12 hour embryonic stages, during early pupal stages.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No expression (0 - 0)
 
Extremely low expression (1 - 10)
 
Very low expression (11 - 100)
 
Low expression (101 - 400)
 
Moderate expression (401 - 1400)
 
Moderately high expression (1401 - 4000)
 
High expression (4001 - 10000)
 
Very high expression (10001 - 100000)
 
Extremely high expression (100001 - 2000000)

Linear, scaled to maximum FBgn0001324 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 1164
embryo 02-04hr
 
 1071
embryo 04-06hr
 
 2755
embryo 06-08hr
 
 2674
embryo 08-10hr
 
 1944
embryo 10-12hr
 
 1132
embryo 12-14hr
 
 1146
embryo 14-16hr
 
 1088
embryo 16-18hr
 
 660
embryo 18-20hr
 
 648
embryo 20-22hr
 
 443
embryo 22-24hr
 
 392
larva L1
 
 529
larva L2
 
 417
larva L3 12hr old
 
 402
larva L3 puffstage 1-2
 
 500
larva L3 puffstage 3-6
 
 1032
larva L3 puffstage 7-9
 
 938
white prepupae new
 
 883
white prepupae 12hr
 
 1172
white prepupae 24hr
 
 1791
pupae 2d postWPP
 
 811
pupae 3d postWPP
 
 497
pupae 4d postWPP
 
 532
adult male 01day
 
 674
adult male 05day
 
 810
adult male 30day
 
 927
adult female 01day
 
 777
adult female 05day
 
 875
adult female 30day
 
 884
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (1164)
embryo 02-04hr
 (1071)
embryo 04-06hr
 (2755)
embryo 06-08hr
 (2674)
embryo 08-10hr
 (1944)
embryo 10-12hr
 (1132)
embryo 12-14hr
 (1146)
embryo 14-16hr
 (1088)
embryo 16-18hr
 (660)
embryo 18-20hr
 (648)
embryo 20-22hr
 (443)
embryo 22-24hr
 (392)
larva L1
 (529)
larva L2
 (417)
larva L3 12hr old
 (402)
larva L3 puffstage 1-2
 (500)
larva L3 puffstage 3-6
 (1032)
larva L3 puffstage 7-9
 (938)
white prepupae new
 (883)
white prepupae 12hr
 (1172)
white prepupae 24hr
 (1791)
pupae 2d postWPP
 (811)
pupae 3d postWPP
 (497)
pupae 4d postWPP
 (532)
adult male 01day
 (674)
adult male 05day
 (810)
adult male 30day
 (927)
adult female 01day
 (777)
adult female 05day
 (875)
adult female 30day
 (884)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 1164
embryo 02-04hr
 
 1071
embryo 04-06hr
 (2755)
embryo 06-08hr
 (2674)
embryo 08-10hr
 (1944)
embryo 10-12hr
 
 1132
embryo 12-14hr
 
 1146
embryo 14-16hr
 
 1088
embryo 16-18hr
 
 660
embryo 18-20hr
 
 648
embryo 20-22hr
 
 443
embryo 22-24hr
 
 392
larva L1
 
 529
larva L2
 
 417
larva L3 12hr old
 
 402
larva L3 puffstage 1-2
 
 500
larva L3 puffstage 3-6
 
 1032
larva L3 puffstage 7-9
 
 938
white prepupae new
 
 883
white prepupae 12hr
 
 1172
white prepupae 24hr
 (1791)
pupae 2d postWPP
 
 811
pupae 3d postWPP
 
 497
pupae 4d postWPP
 
 532
adult male 01day
 
 674
adult male 05day
 
 810
adult male 30day
 
 927
adult female 01day
 
 777
adult female 05day
 
 875
adult female 30day
 
 884
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 1164
embryo 02-04hr
 
 1071
embryo 04-06hr
 
 2755
embryo 06-08hr
 
 2674
embryo 08-10hr
 
 1944
embryo 10-12hr
 
 1132
embryo 12-14hr
 
 1146
embryo 14-16hr
 
 1088
embryo 16-18hr
 
 660
embryo 18-20hr
 
 648
embryo 20-22hr
 
 443
embryo 22-24hr
 
 392
larva L1
 
 529
larva L2
 
 417
larva L3 12hr old
 
 402
larva L3 puffstage 1-2
 
 500
larva L3 puffstage 3-6
 
 1032
larva L3 puffstage 7-9
 
 938
white prepupae new
 
 883
white prepupae 12hr
 
 1172
white prepupae 24hr
 
 1791
pupae 2d postWPP
 
 811
pupae 3d postWPP
 
 497
pupae 4d postWPP
 
 532
adult male 01day
 
 674
adult male 05day
 
 810
adult male 30day
 
 927
adult female 01day
 
 777
adult female 05day
 
 875
adult female 30day
 
 884
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 1164
embryo 02-04hr
 
 1071
embryo 04-06hr
 
 2755
embryo 06-08hr
 
 2674
embryo 08-10hr
 
 1944
embryo 10-12hr
 
 1132
embryo 12-14hr
 
 1146
embryo 14-16hr
 
 1088
embryo 16-18hr
 
 660
embryo 18-20hr
 
 648
embryo 20-22hr
 
 443
embryo 22-24hr
 
 392
larva L1
 
 529
larva L2
 
 417
larva L3 12hr old
 
 402
larva L3 puffstage 1-2
 
 500
larva L3 puffstage 3-6
 
 1032
larva L3 puffstage 7-9
 
 938
white prepupae new
 
 883
white prepupae 12hr
 
 1172
white prepupae 24hr
 
 1791
pupae 2d postWPP
 
 811
pupae 3d postWPP
 
 497
pupae 4d postWPP
 
 532
adult male 01day
 
 674
adult male 05day
 
 810
adult male 30day
 
 927
adult female 01day
 
 777
adult female 05day
 
 875
adult female 30day
 
 884
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to maximum FBgn0001324 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 1164
embryo 02-04hr
 
 1071
embryo 04-06hr
 
 2755
embryo 06-08hr
 
 2674
embryo 08-10hr
 
 1944
embryo 10-12hr
 
 1132
embryo 12-14hr
 
 1146
embryo 14-16hr
 
 1088
embryo 16-18hr
 
 660
embryo 18-20hr
 
 648
embryo 20-22hr
 
 443
embryo 22-24hr
 
 392
larva L1
 
 529
larva L2
 
 417
larva L3 12hr old
 
 402
larva L3 puffstage 1-2
 
 500
larva L3 puffstage 3-6
 
 1032
larva L3 puffstage 7-9
 
 938
white prepupae new
 
 883
white prepupae 12hr
 
 1172
white prepupae 24hr
 
 1791
pupae 2d postWPP
 
 811
pupae 3d postWPP
 
 497
pupae 4d postWPP
 
 532
adult male 01day
 
 674
adult male 05day
 
 810
adult male 30day
 
 927
adult female 01day
 
 777
adult female 05day
 
 875
adult female 30day
 
 884
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
log, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (1164)
embryo 02-04hr
 (1071)
embryo 04-06hr
 (2755)
embryo 06-08hr
 (2674)
embryo 08-10hr
 (1944)
embryo 10-12hr
 (1132)
embryo 12-14hr
 (1146)
embryo 14-16hr
 (1088)
embryo 16-18hr
 (660)
embryo 18-20hr
 (648)
embryo 20-22hr
 (443)
embryo 22-24hr
 (392)
larva L1
 (529)
larva L2
 (417)
larva L3 12hr old
 (402)
larva L3 puffstage 1-2
 (500)
larva L3 puffstage 3-6
 (1032)
larva L3 puffstage 7-9
 (938)
white prepupae new
 (883)
white prepupae 12hr
 (1172)
white prepupae 24hr
 (1791)
pupae 2d postWPP
 (811)
pupae 3d postWPP
 (497)
pupae 4d postWPP
 (532)
adult male 01day
 (674)
adult male 05day
 (810)
adult male 30day
 (927)
adult female 01day
 (777)
adult female 05day
 (875)
adult female 30day
 (884)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 1164
embryo 02-04hr
 
 1071
embryo 04-06hr
 (2755)
embryo 06-08hr
 (2674)
embryo 08-10hr
 1944
embryo 10-12hr
 
 1132
embryo 12-14hr
 
 1146
embryo 14-16hr
 
 1088
embryo 16-18hr
 
 660
embryo 18-20hr
 
 648
embryo 20-22hr
 
 443
embryo 22-24hr
 
 392
larva L1
 
 529
larva L2
 
 417
larva L3 12hr old
 
 402
larva L3 puffstage 1-2
 
 500
larva L3 puffstage 3-6
 
 1032
larva L3 puffstage 7-9
 
 938
white prepupae new
 
 883
white prepupae 12hr
 
 1172
white prepupae 24hr
 1791
pupae 2d postWPP
 
 811
pupae 3d postWPP
 
 497
pupae 4d postWPP
 
 532
adult male 01day
 
 674
adult male 05day
 
 810
adult male 30day
 
 927
adult female 01day
 
 777
adult female 05day
 
 875
adult female 30day
 
 884
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 1164
embryo 02-04hr
 
 1071
embryo 04-06hr
 
 2755
embryo 06-08hr
 
 2674
embryo 08-10hr
 
 1944
embryo 10-12hr
 
 1132
embryo 12-14hr
 
 1146
embryo 14-16hr
 
 1088
embryo 16-18hr
 
 660
embryo 18-20hr
 
 648
embryo 20-22hr
 
 443
embryo 22-24hr
 
 392
larva L1
 
 529
larva L2
 
 417
larva L3 12hr old
 
 402
larva L3 puffstage 1-2
 
 500
larva L3 puffstage 3-6
 
 1032
larva L3 puffstage 7-9
 
 938
white prepupae new
 
 883
white prepupae 12hr
 
 1172
white prepupae 24hr
 
 1791
pupae 2d postWPP
 
 811
pupae 3d postWPP
 
 497
pupae 4d postWPP
 
 532
adult male 01day
 
 674
adult male 05day
 
 810
adult male 30day
 
 927
adult female 01day
 
 777
adult female 05day
 
 875
adult female 30day
 
 884
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 1164
embryo 02-04hr
 
 1071
embryo 04-06hr
 
 2755
embryo 06-08hr
 
 2674
embryo 08-10hr
 
 1944
embryo 10-12hr
 
 1132
embryo 12-14hr
 
 1146
embryo 14-16hr
 
 1088
embryo 16-18hr
 
 660
embryo 18-20hr
 
 648
embryo 20-22hr
 
 443
embryo 22-24hr
 
 392
larva L1
 
 529
larva L2
 
 417
larva L3 12hr old
 
 402
larva L3 puffstage 1-2
 
 500
larva L3 puffstage 3-6
 
 1032
larva L3 puffstage 7-9
 
 938
white prepupae new
 
 883
white prepupae 12hr
 
 1172
white prepupae 24hr
 
 1791
pupae 2d postWPP
 
 811
pupae 3d postWPP
 
 497
pupae 4d postWPP
 
 532
adult male 01day
 
 674
adult male 05day
 
 810
adult male 30day
 
 927
adult female 01day
 
 777
adult female 05day
 
 875
adult female 30day
 
 884
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

FlyAtlas Anatomical Expression Data for FBgn0001324


   Styles
Linear
Logarithmic
Heatmap
Back-to-back
   Scales
max expr for FBgn0001324
Moderate expression bin max
High level expression bin max
Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, adult testis.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (1000 - 25000)

Linear, scaled to maximum FBgn0001324 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 139.875
Larval Midgut
 
 46.4
Larval Hindgut
 
 47.1
Larval Malpighian Tubules
 
 64.4
Larval Fat Body
 
 65.9
Larval Salivary Gland
 
 85
Larval Trachea
 
 95.475
Larval Carcass
 
 60.8
Adult Head
 
 43.5
Adult Eye
 
 47.5
Adult Brain
 
 84
Adult Thoracic-Abdominal Ganglion
 
 73.7
Adult Crop
 
 55.7
Adult Midgut
 
 37.1
Adult Hindgut
 
 43.5
Adult Malpighian Tubules
 
 49.3
Adult Fat Body no informative data
Adult Salivary Gland no informative data
Adult Heart
 
 42.6
Adult VirginFemale Spermatheca
 
 49.7
Adult InseminatedFemale Spermatheca
 
 58
Adult Ovary
 
 71.1
Adult Testis
 
 187.7
Adult Male Accessory Gland
 
 60.3
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 139.875
Larval Midgut
 
 46.4
Larval Hindgut
 
 47.1
Larval Malpighian Tubules
 
 64.4
Larval Fat Body
 
 65.9
Larval Salivary Gland
 
 85
Larval Trachea
 
 95.475
Larval Carcass
 
 60.8
Adult Head
 
 43.5
Adult Eye
 
 47.5
Adult Brain
 
 84
Adult Thoracic-Abdominal Ganglion
 
 73.7
Adult Crop
 
 55.7
Adult Midgut
 
 37.1
Adult Hindgut
 
 43.5
Adult Malpighian Tubules
 
 49.3
Adult Fat Body no informative data
Adult Salivary Gland no informative data
Adult Heart
 
 42.6
Adult VirginFemale Spermatheca
 
 49.7
Adult InseminatedFemale Spermatheca
 
 58
Adult Ovary
 
 71.1
Adult Testis
 
 187.7
Adult Male Accessory Gland
 
 60.3
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 139.875
Larval Midgut
 
 46.4
Larval Hindgut
 
 47.1
Larval Malpighian Tubules
 
 64.4
Larval Fat Body
 
 65.9
Larval Salivary Gland
 
 85
Larval Trachea
 
 95.475
Larval Carcass
 
 60.8
Adult Head
 
 43.5
Adult Eye
 
 47.5
Adult Brain
 
 84
Adult Thoracic-Abdominal Ganglion
 
 73.7
Adult Crop
 
 55.7
Adult Midgut
 
 37.1
Adult Hindgut
 
 43.5
Adult Malpighian Tubules
 
 49.3
Adult Fat Body no informative data
Adult Salivary Gland no informative data
Adult Heart
 
 42.6
Adult VirginFemale Spermatheca
 
 49.7
Adult InseminatedFemale Spermatheca
 
 58
Adult Ovary
 
 71.1
Adult Testis
 
 187.7
Adult Male Accessory Gland
 
 60.3
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 139.875
Larval Midgut
 
 46.4
Larval Hindgut
 
 47.1
Larval Malpighian Tubules
 
 64.4
Larval Fat Body
 
 65.9
Larval Salivary Gland
 
 85
Larval Trachea
 
 95.475
Larval Carcass
 
 60.8
Adult Head
 
 43.5
Adult Eye
 
 47.5
Adult Brain
 
 84
Adult Thoracic-Abdominal Ganglion
 
 73.7
Adult Crop
 
 55.7
Adult Midgut
 
 37.1
Adult Hindgut
 
 43.5
Adult Malpighian Tubules
 
 49.3
Adult Fat Body no informative data
Adult Salivary Gland no informative data
Adult Heart
 
 42.6
Adult VirginFemale Spermatheca
 
 49.7
Adult InseminatedFemale Spermatheca
 
 58
Adult Ovary
 
 71.1
Adult Testis
 
 187.7
Adult Male Accessory Gland
 
 60.3
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to maximum FBgn0001324 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 139.875
Larval Midgut
 
 46.4
Larval Hindgut
 
 47.1
Larval Malpighian Tubules
 
 64.4
Larval Fat Body
 
 65.9
Larval Salivary Gland
 
 85
Larval Trachea
 
 95.475
Larval Carcass
 
 60.8
Adult Head
 
 43.5
Adult Eye
 
 47.5
Adult Brain
 
 84
Adult Thoracic-Abdominal Ganglion
 
 73.7
Adult Crop
 
 55.7
Adult Midgut
 
 37.1
Adult Hindgut
 
 43.5
Adult Malpighian Tubules
 
 49.3
Adult Fat Body no informative data
Adult Salivary Gland no informative data
Adult Heart
 
 42.6
Adult VirginFemale Spermatheca
 
 49.7
Adult InseminatedFemale Spermatheca
 
 58
Adult Ovary
 
 71.1
Adult Testis
 
 187.7
Adult Male Accessory Gland
 
 60.3
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 139.875
Larval Midgut
 
 46.4
Larval Hindgut
 
 47.1
Larval Malpighian Tubules
 
 64.4
Larval Fat Body
 
 65.9
Larval Salivary Gland
 
 85
Larval Trachea
 
 95.475
Larval Carcass
 
 60.8
Adult Head
 
 43.5
Adult Eye
 
 47.5
Adult Brain
 
 84
Adult Thoracic-Abdominal Ganglion
 
 73.7
Adult Crop
 
 55.7
Adult Midgut
 
 37.1
Adult Hindgut
 
 43.5
Adult Malpighian Tubules
 
 49.3
Adult Fat Body no informative data
Adult Salivary Gland no informative data
Adult Heart
 
 42.6
Adult VirginFemale Spermatheca
 
 49.7
Adult InseminatedFemale Spermatheca
 
 58
Adult Ovary
 
 71.1
Adult Testis
 
 187.7
Adult Male Accessory Gland
 
 60.3
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 139.875
Larval Midgut
 
 46.4
Larval Hindgut
 
 47.1
Larval Malpighian Tubules
 
 64.4
Larval Fat Body
 
 65.9
Larval Salivary Gland
 
 85
Larval Trachea
 
 95.475
Larval Carcass
 
 60.8
Adult Head
 
 43.5
Adult Eye
 
 47.5
Adult Brain
 
 84
Adult Thoracic-Abdominal Ganglion
 
 73.7
Adult Crop
 
 55.7
Adult Midgut
 
 37.1
Adult Hindgut
 
 43.5
Adult Malpighian Tubules
 
 49.3
Adult Fat Body no informative data
Adult Salivary Gland no informative data
Adult Heart
 
 42.6
Adult VirginFemale Spermatheca
 
 49.7
Adult InseminatedFemale Spermatheca
 
 58
Adult Ovary
 
 71.1
Adult Testis
 
 187.7
Adult Male Accessory Gland
 
 60.3
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 139.875
Larval Midgut
 
 46.4
Larval Hindgut
 
 47.1
Larval Malpighian Tubules
 
 64.4
Larval Fat Body
 
 65.9
Larval Salivary Gland
 
 85
Larval Trachea
 
 95.475
Larval Carcass
 
 60.8
Adult Head
 
 43.5
Adult Eye
 
 47.5
Adult Brain
 
 84
Adult Thoracic-Abdominal Ganglion
 
 73.7
Adult Crop
 
 55.7
Adult Midgut
 
 37.1
Adult Hindgut
 
 43.5
Adult Malpighian Tubules
 
 49.3
Adult Fat Body no informative data
Adult Salivary Gland no informative data
Adult Heart
 
 42.6
Adult VirginFemale Spermatheca
 
 49.7
Adult InseminatedFemale Spermatheca
 
 58
Adult Ovary
 
 71.1
Adult Testis
 
 187.7
Adult Male Accessory Gland
 
 60.3
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body no informative data
Adult Salivary Gland no informative data
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass no informative data

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 43.5
 
NA 
Eye
 
 47.5
 
NA 
Brain
 
 84
 
139.875 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 73.7
 
NA 
Crop
 
 55.7
 
46.4 
Midgut
 
 37.1
 
47.1 
Hindgut
 
 43.5
 
64.4 
Malpighian Tubules
 
 49.3
 
65.9 
Fat Body
 
 no informative data
 
85 
Salivary Gland
 
 no informative data
 
NA 
Heart
 
 42.6
 
95.475 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 49.7
 
NA 
InseminatedFemale Spermatheca
 
 58
 
NA 
Ovary
 
 71.1
 
NA 
Testis
 
 187.7
 
NA 
Male Accessory Gland
 
 60.3
 
60.8 
Carcass
 
 no informative data

modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
hide Classical Alleles ( 14 )
For All Classical Alleles Show

Allele of ktoClassMutagenStocksKnown lesion
kto1hypomorphic allele - genetic evidence3 --
kto12510 --
kto12
0 --
kto1440 --
kto32E160 --
kto33AC200 --
kto33AC90 --
kto33D190 --
kto3
0 --
ktoT2410 Yes
ktoT5550 Yes
ktoT6310 Yes
ktoT663
0 --
ktounspecified
0 --
hide Alleles Carried on Transgenic Constructs ( 8 )
For All Alleles Carried on Transgenic Constructs Show

Allele of ktoClassMutagenStocksKnown lesion
ktoGD132072 Yes
ktoHMS010621 Yes
ktoa.cKa0 Yes
ktocKa0 Yes
ktodsRNA.cKa0 Yes
ktodsRNA.si.cKa0 Yes
ktoNIG.8491R0 Yes
ktoScer\UAS.cJa0 Yes
hide Aneuploid Aberrations
Disrupted in
Not disrupted in
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
Insertions
Type of insertions
Name
Expression data
hide Gene Ontology: Function, Process & Cellular Component ( 12 unique terms )
hide Terms Based on Experimental Evidence ( 9 terms )
Molecular Function
CV term
References
inferred from physical interaction with UniProtKB:P25008
(assigned by UniProtKB)
inferred from physical interaction with UniProtKB:Q7KTX8
(assigned by UniProtKB)
inferred from physical interaction with UniProtKB:Q9VT57
(assigned by UniProtKB)
inferred from direct assay
(assigned by UniProtKB)
Biological Process
CV term
References
inferred from mutant phenotype
inferred from mutant phenotype
inferred from direct assay
(assigned by UniProtKB)
inferred from mutant phenotype
Cellular Component
CV term
References
inferred from direct assay
(assigned by UniProtKB)
inferred from physical interaction with Cdk8, CycC
hide Terms Based on Predictions or Assertions ( 5 terms )
Molecular Function
CV term
References
inferred from sequence or structural similarity
non-traceable author statement
Biological Process
CV term
References
Cellular Component
CV term
References
inferred from sequence or structural similarity
non-traceable author statement
non-traceable author statement
hide Sequence Ontology: Class of Gene
hide Interactions & Pathways
hide Summary of Physical Interactions
Protein-protein
Interacting group
Assay
References
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
kto allele
Gene
References
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Linkouts
BioGRID - A database of protein and genetic interactions
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs
Linkouts
InParanoid A subset of ortholog calls from InParanoid.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 6 )
Bloomington
Kyoto
VDRC
hide Genomic Clones ( 2 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 12 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
hide RNAi & Array Information
Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
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hide Relationship to Other Genes
Source for database identity of
Source for database merge of
Source for merge of: kto CG8491
Additional comments
Source for merge of kto CG8491 was sequence comparison (date:010116).
hide Other Comments
Both skd and kto are required to establish normal cell affinity differences at the anterior-posterior and dorsal-ventral compartment boundaries of the wing disc.
skd and kto seem to act together to promote specific cell fate decisions, transmitting either a novel signal or a combination of signals.
Sections of the Scr regulatory region may be important for regulation of Scr by Polycomb- and trithorax-group genes.
kto is one of the 18 loci identified in a screen for dominant modifiers of Pc and/or Antp phenotypes. Alleles of Pc, Pcl, Scm, Dll, brm, kto, Scr and trx show clear dominant enhancement or suppression of AntpScx, whereas alleles of vtd, Vha55, Su(Pc)37D, urd, mor, skd and osa do not.
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Linkouts
BioGRID - A database of protein and genetic interactions
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InParanoid A subset of ortholog calls from InParanoid.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Synonyms & Secondary IDs ( 17 )
Reported As
Symbol Synonym
Srb8/KTO/TRAP230
Name Synonym
Mediator complex subunit 12
Secondary FlyBase IDs
  • FBgn0036912
hide References ( 86 )
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hide Recent research papers ( 5 )
Bhatia et al., 2010, Genes Cells 15(7): 725--735
Chromatin remodeling protein INO80 has a role in regulation of homeotic gene expression in Drosophila. [FBrf0211277]
Cooper et al., 2010, Genetics 185(3): 811--822
Molecular Genetic Analysis of Chd3 and Polytene Chromosome Region 76B-D in Drosophila melanogaster. [FBrf0211329]
Gobert et al., 2010, Mol. Cell. Biol. 30(11): 2837--2848
A genome-wide RNA interference screen identifies a differential role of the mediator CDK8 module subunits for GATA/ RUNX-activated transcription in drosophila. [FBrf0210768]
Saj et al., 2010, Dev. Cell 18(5): 862--876
A combined ex vivo and in vivo RNAi screen for notch regulators in Drosophila reveals an extensive notch interaction network. [FBrf0210834]
Terriente-Félix et al., 2010, Genetics 185(2): 671--684
Identification of genes affecting wing patterning through a loss-of-function mutagenesis screen and characterization of med15 function during wing development. [FBrf0211230]
hide Recent reviews (0)
All reviews listed in FlyBase were published before 2010