A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Gene Dmel\soz

General Information
SymbolDmel\sozSpeciesD. melanogaster
NamesozzledAnnotation symbol
Feature typegeneFlyBase IDFBgn0001568
Gene Model StatusUnannotated Stock availability 1 publicly available
Also Known AsA72, EA41
Genomic Location
Chromosome (arm)Recombination map1-[66]
Cytogenetic map20B-20BSequence location
hide Summary Information
Automatically generated summary

See sections below for more information
The gene sozzled is referred to in FlyBase by the symbol Dmel\soz (FBgn0001568). It is a gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 6 alleles are reported. No phenotypic data is available. It has no annotated transcripts. Gene has not been localized to the genome sequence.

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Description
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This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
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hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
20B-20B  
Left limit from inclusion within Df(1)LB7 (FBrf0049891) Right limit from inclusion within Df(1)mal3 (FBrf0039985)  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
Experimentally Determined Recombination Data
Location
1-[66]
 
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Comments on Gene Model
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Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Type
Symbol & Location
Additional Notes
References
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Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
hide Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term
Evidence
References
hide Expression Deduced from Reporters
hide High-Throughput Expression Data
Associated Tools
Reference
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
hide FlyAtlas Anatomy Microarray
hide modENCODE Anatomy RNA-Seq
hide modENCODE Development RNA-Seq
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Linkouts
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
cell lethal | germline clone
lethal | larval stage | recessive
lethal | recessive
Phenotype manifest in
Allele
hide Classical Alleles ( 6 )
For All Classical Alleles Show

Allele of sozClassMutagenStocksKnown lesion
soz11 --
soz+
0 --
soz20 --
soz30 --
soz40 --
soz50 --
hide Alleles Carried on Transgenic Constructs ( 0 )
For All Alleles Carried on Transgenic Constructs Show

Allele of sozClassMutagenStocksKnown lesion
hide Aneuploid Aberrations
Disrupted in
(Eeken et al., 1985)
(Perrimon et al., 1989, Kramers et al., 1991)
(Perrimon et al., 1989)
(Eeken et al., 1985)
(Kramers et al., 1983, Eeken et al., 1985, Perrimon et al., 1989, Kramers et al., 1991)
(Perrimon et al., 1989)
(Perrimon et al., 1989)
(Perrimon et al., 1989)
(Perrimon et al., 1989)
(Perrimon et al., 1989)
(Kramers et al., 1983)
(Kramers et al., 1983)
(Kramers et al., 1983)
(Kramers et al., 1983)
(Kramers et al., 1983)
(Kramers et al., 1983)
(Kramers et al., 1983)
(Kramers et al., 1983, Perrimon et al., 1989)
(Kramers et al., 1983)
(Kramers et al., 1983)
(Perrimon et al., 1989)
(Perrimon et al., 1989, Miklos and de Couet, 1990)
(Perrimon et al., 1989)
(Perrimon et al., 1989)
(Perrimon et al., 1989)
(Kramers et al., 1983, Kramers et al., 1991)
(Perrimon et al., 1989)
(Eckstrom, 1995.11.2)
(Schalet, 1986)
(Kramers et al., 1983, Kramers et al., 1991)
Duplicated in
(Perrimon et al., 1989)
(Perrimon et al., 1989)
(Perrimon et al., 1989)
(Perrimon et al., 1989, Miklos and de Couet, 1990)
(Perrimon et al., 1989)
(Eeken et al., 1985)
(Perrimon et al., 1989)
(Kramers et al., 1983, Perrimon et al., 1989, Kramers et al., 1991, Lindsley and Zimm, 1992)
(Eeken et al., 1985)
(Perrimon et al., 1989)
(Miklos and de Couet, 1990)
(Kramers et al., 1983, Perrimon et al., 1989, Miklos and de Couet, 1990, Kramers et al., 1991)
(Perrimon et al., 1989)
(Eeken et al., 1985)
(Perrimon et al., 1989)
(Perrimon et al., 1989)
(Perrimon et al., 1989)
Not disrupted in
(Perrimon et al., 1989, Miklos and de Couet, 1990)
(Perrimon et al., 1989)
(Eeken et al., 1985, Perrimon et al., 1989, Kramers et al., 1991)
(Eeken et al., 1985, Perrimon et al., 1989, Miklos and de Couet, 1990)
(Perrimon et al., 1989)
(Perrimon et al., 1989, Miklos and de Couet, 1990)
(Perrimon et al., 1989, Miklos and de Couet, 1990)
(Perrimon et al., 1989)
(Perrimon et al., 1989)
(Eeken et al., 1985, Perrimon et al., 1989, Kramers et al., 1991)
(Perrimon et al., 1989, Miklos and de Couet, 1990)
(Perrimon et al., 1989, Miklos and de Couet, 1990)
(Perrimon et al., 1989)
(Perrimon et al., 1989)
(Perrimon et al., 1989)
(Perrimon et al., 1989, Miklos and de Couet, 1990)
(Perrimon et al., 1989)
(Perrimon et al., 1989, Miklos and de Couet, 1990)
(Perrimon et al., 1989)
(Perrimon et al., 1989, Miklos and de Couet, 1990)
(Perrimon et al., 1989, Miklos and de Couet, 1990)
(Perrimon et al., 1989, Miklos and de Couet, 1990)
(Perrimon et al., 1989)
(Kramers et al., 1991)
(Kramers et al., 1991)
(Perrimon et al., 1989)
(Perrimon et al., 1989)
(Perrimon et al., 1989, Miklos and de Couet, 1990, Kramers et al., 1991)
(Perrimon et al., 1989)
(Perrimon et al., 1989, Miklos and de Couet, 1990)
(Perrimon et al., 1989)
(Kramers et al., 1983, Kramers et al., 1991)
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
Insertions
Type of insertions
Name
Expression data
hide Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
hide Terms Based on Experimental Evidence ( 0 terms )
hide Terms Based on Predictions or Assertions ( 0 terms )
hide Sequence Ontology: Class of Gene
gene
 
hide Interactions & Pathways
hide Summary of Physical Interactions
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
soz allele
Gene
References
hide External Data
Linkouts
hide Orthologs
hide OrthoDB Orthologs (0) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
OrthoDB orthology group searches
(Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288)
Drosophila inclusive ortholog search
No orthologs identified
Dipteran inclusive ortholog search
No orthologs identified
Insect inclusive ortholog search
No orthologs identified
Arthropod inclusive ortholog search
No orthologs identified
Metazoa inclusive ortholog search
No orthologs identified
Orthologs in Drosophila Species (None identified)
No orthologies identified
Orthologs in non-Drosophila Dipterans (None identified)
No non-Drosophilid orthologies identified
Orthologs in non-Dipteran Insects (None identified)
No non-Dipteran orthologies identified
Orthologs in non-Insect Arthropods (None identified)
No non-Insect Arthropod orthologies identified
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
hide Human Orthologs (0)
Gene
OMIM
HGNC
hideAAA Orthologs (0) based on analysis using Dmel annotation version 4.3
No orthologs identified
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 1 )
Bloomington
4765
soz1/Dp(1;Y)y+mal106/FM7a
hide Genomic Clones ( 0 )
hide cDNA Clones ( 0 )
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
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Linkouts
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
•
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hide Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
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hide External Crossreferences & Linkouts
Sequence Crossreferences
Other Crossreferences
Linkouts
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
•
hide Synonyms & Secondary IDs ( 6 )
Reported As
Symbol Synonym
A72
(Kramers et al., 1991, Schalet, 1986, Eeken et al., 1985, Kramers et al., 1983)
EA41
(Eckstrom, 1995.11.2, Perrimon et al., 1989, Perrimon et al., 1989)
l(1)20Bb
(Miklos, 1997.1.29, )
l(1)HM41
 
soz
 
Name Synonym
sozzled
(Miklos, 1997.1.29)
Secondary FlyBase IDs
hide References ( 13 )
Research paper
Andrews et al., 1996, Genetics 143(4): 1699--1711
The stoned locus of Drosophila melanogaster produces a dicistronic transcript and encodes two distinct polypeptides. [FBrf0089585]
Kramers et al., 1991, Mutat. Res. 252: 17--33
Inhalation exposure in Drosophila mutagenesis assays: experiments with aliphatic halogenated hydrocarbons, with emphasis on the genetic activity profile of 1,2-dichloroethane. [FBrf0054740]
Miklos and de Couet, 1990, J. Neurogenet. 6(3): 133--151
The mutations previously designated as flightless-I3, flightless-O2 and standby are members of the W-2 lethal complementation group at the base of the X-chromosome of Drosophila melanogaster. [FBrf0052388]
Perrimon et al., 1989, Genetics 121: 333--352
Zygotic lethals with specific maternal effect phenotypes in Drosophila melanogaster. [FBrf0049894]
Perrimon et al., 1989, Genetics 121: 313--331
Developmental genetics of loci at the base of the X chromosome of Drosophila melanogaster. [FBrf0049891]
Miklos et al., 1986, D. I. S. 63: 96--97
The proximal-distal orientation of two lethal complementation groups A112 and LB20 in region 19F at the base of the X chromosome. [FBrf0044126]
Schalet, 1986, Mutat. Res. 163: 115--144
The distribution of and complementation relationships between spontaneous X-linked recessive lethal mutations recovered from crossing long-term laboratory stocks of Drosophila melanogaster. [FBrf0045066]
Eeken et al., 1985, Mutat. Res. 150: 261--275
Distribution of MR-induced sex-linked recessive lethal mutations in Drosophila melanogaster. [FBrf0043301]
Kramers et al., 1983, Mutat. Res. 107: 187--201
High proportion of multi-locus deletions among hycanthone-induced X-linked recessive lethals in Drosophila melanogaster. [FBrf0039985]
Review
Miklos and Cotsell, 1990, BioEssays 12(1): 1--6
Chromosome structure at interfaces between major chromatin types: alpha- and beta-heterochromatin. [FBrf0051261]
Personal communication to FlyBase
Miklos, 1997.1.29, FlyBase query.
FlyBase query. [FBrf0091325]
Eckstrom, 1995.11.2, Df(1)RA67.
Df(1)RA67. [FBrf0083634]
Book
Lindsley and Zimm, 1992, The Genome of Drosophila melanogaster.
The Genome of Drosophila melanogaster. [FBrf0066905]