FB2019_05, released Oct 15, 2019

Gene: Dmel\Lam

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General Information
Symbol
Dmel\Lam
Species
D. melanogaster
Name
Lamin
Annotation Symbol
CG6944
Feature Type
protein_coding_gene
FlyBase ID
FBgn0002525
Gene Model Status
Current
Stock Availability
18 publicly available
Gene Snapshot
In progress.Contributions welcome.
Other Summaries
Also Known As
lamin Dm0, Dm0, Dm0, lamin Dm0, lamin B
Key Links
Genomic Location
Cytogenetic map
25E6-25E6
Sequence location
2L:5,542,480..5,546,642 [+]
Recombination map
2-17
Sequence
Get Decorated FASTA
Genomic Maps
Other Genome Views
The following external sites may use different assemblies or annotations than FlyBase.
NCBI
UCSC
Ensembl
PopFly
Function
GO Summary Ribbons
Gene Group (FlyBase)
Protein Family (UniProt)
Belongs to the intermediate filament family. (P08928)
Protein Signatures (InterPro)
Molecular Function (GO)
[Detailed GO annotations]
Experimental Evidence
chromatin binding; protein binding; signaling receptor binding; structural constituent of cytoskeleton
Predictions / Assertions
-
Summaries
Gene Group (FlyBase)
LAMINS -
Lamins are type V intermediate filament that form the major component of the nuclear lamina (FBrf0200518).
Protein Function (UniProtKB)
Lamins are components of the nuclear lamina, a fibrous layer on the nucleoplasmic side of the inner nuclear membrane, which is thought to provide a framework for the nuclear envelope and may also interact with chromatin (PubMed:3126192, PubMed:15035436). May have a role in the localization of the LEM domain proteins Ote, bocks and MAN1 to the nuclear membrane (PubMed:15035436, PubMed:16439308). In spermatocytes, plays a role in maintaining type-A lamin LamC nuclear localization; regulates meiotic cytokinesis by maintaining the structure of the spindle envelope, and by contributing to the formation of the contractile ring and central spindle (PubMed:27402967).
(UniProt, P08928)
Phenotypic Description (Red Book; Lindsley and Zimm 1992)
Lam: Lamin
The structural gene for nuclear lamin. Translated as a prolamin of apparent molecular mass of 76-kd, which is quickly processed to a 74-kd species, presumably by proteolysis. The processed polypeptide is assembled into the nuclear envelope, where it becomes phosphorylated and again attains a mass of 76 kd (Smith, Gruenbaum, Berrios, and Fisher, 1987, J. Cell Biol. 105: 771-90).
Summary (Interactive Fly)
an intermediate filament protein - chromatin associated protein - Lamin binds to scaffold/matrix-associated regions, DNA sequences that are held responsiblefor mediating the interaction between the nuclear matrix and chromatin.
Gene Model and Products
Number of Transcripts
4
Number of Unique Polypeptides
1

Please see the GBrowse view of Dmel\Lam or the JBrowse view of Dmel\Lam for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)
Isoform displayed:
Pfam protein domains
InterPro name
classification
start
end
Protein Domains (via SMART)
Isoform displayed:
SMART protein domains
InterPro name
classification
start
end
Comments on Gene Model
Gene model reviewed during 5.55
Annotated transcripts do not represent all supported alternative splices within 5' UTR.
Gene model reviewed during 5.45
Low-frequency RNA-Seq exon junction(s) not annotated.
Gene model reviewed during 5.56
Sequence Ontology: Class of Gene
nuclear_gene
protein_coding_gene
Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Assoc. CDS (aa)
Lam-RA
FBtr0079100
NM_057268
3129
622
Lam-RB
FBtr0307058
NM_001258963
3235
622
Lam-RC
FBtr0307059
NM_001258964
3504
622
Lam-RD
FBtr0346460
NM_001298700
3191
622
Additional Transcript Data and Comments
Reported size (kB)
3.0, 2.8 (northern blot)
(Gruenbaum et al., 1988)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank
Lam-PA
FBpp0078733
71.3
622
6.40
NP_476616
AAF52262
Lam-PB
FBpp0297901
71.3
622
6.40
NP_001245892
AFH03566
Lam-PC
FBpp0297902
71.3
622
6.40
NP_001245893
AFH03567
Lam-PD
FBpp0312110
71.3
622
6.40
NP_001285629
AHN54144
Polypeptides with Identical Sequences

The group(s) of polypeptides indicated below share identical sequence to each other.

622 aa isoforms: Lam-PA, Lam-PB, Lam-PC, Lam-PD
Additional Polypeptide Data and Comments
Reported size (kDa)
622 (aa); 76 (kD observed); 71 (kD predicted)
(Gruenbaum et al., 1988)
Comments
The 76 kD Lam polypeptide is post-translationally modified to give a 74 kD form.
(Gruenbaum et al., 1988)
External Data
Subunit Structure (UniProtKB)
Interacts directly with LBR (PubMed:15054108). Interacts with MAN1 (PubMed:16439308). Interacts with Ote (PubMed:9632815, PubMed:22751930).
(UniProt, P08928)
Post Translational Modification
Three forms of lamin have been identified in D.melanogaster, lamin Dm0 is rapidly processed to lamin Dm1 in the cytoplasm, Dm1 is then assembled in the nuclear envelope and is then phosphorylated, forming lamin Dm2.
(UniProt, P08928)
Crossreferences
InterPro - A database of protein families, domains and functional sites
Linkouts
Sequences Consistent with the Gene Model
Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\Lam using the Feature Mapper tool.

External Data
Crossreferences
Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
Linkouts
Gene Ontology (37 terms)
Molecular Function (4 terms)
Terms Based on Experimental Evidence (4 terms)
CV Term
Evidence
References
chromatin binding
inferred from direct assay
(Verboon et al., 2015)
protein binding
inferred from physical interaction with FLYBASE:fs(1)Ya; FB:FBgn0000927
(Goldberg et al., 1998)
inferred from physical interaction with FLYBASE:Ote; FB:FBgn0266420
(Goldberg et al., 1998)
inferred from physical interaction with FLYBASE:wash; FB:FBgn0033692
(Verboon et al., 2015)
signaling receptor binding
inferred from physical interaction with UniProtKB:Q8MLV1
(assigned by UniProt )
(Wagner et al., 2004)
structural constituent of cytoskeleton
inferred from mutant phenotype
(Lenz-Bohme et al., 1997)
Terms Based on Predictions or Assertions (0 terms)
Biological Process (27 terms)
Terms Based on Experimental Evidence (27 terms)
CV Term
Evidence
References
adult locomotory behavior
inferred from mutant phenotype
(Brandt et al., 2008)
cell aging
inferred from mutant phenotype
(Brandt et al., 2008)
central nervous system development
inferred from mutant phenotype
(Osouda et al., 2005)
chitin-based cuticle development
inferred from mutant phenotype
(Osouda et al., 2005)
chromatin silencing
inferred from direct assay
(Dialynas et al., 2010)
inferred from mutant phenotype
(Verboon et al., 2015, Shevelyov et al., 2009)
compound eye morphogenesis
inferred from mutant phenotype
(Osouda et al., 2005)
digestive tract morphogenesis
inferred from mutant phenotype
(Osouda et al., 2005)
gonad morphogenesis
inferred from mutant phenotype
(Osouda et al., 2005)
heterochromatin maintenance involved in chromatin silencing
inferred from mutant phenotype
(Chen et al., 2014)
male meiosis cytokinesis
inferred from mutant phenotype
(assigned by UniProt )
(Hayashi et al., 2016)
meiosis I cytokinesis
inferred from mutant phenotype
(assigned by UniProt )
(Hayashi et al., 2016)
mitotic nuclear envelope reassembly
inferred from direct assay
(Ulitzur et al., 1992)
negative regulation of cell population proliferation
inferred from mutant phenotype
(Chen et al., 2014)
negative regulation of immune response
inferred from mutant phenotype
(Chen et al., 2014)
nuclear envelope organization
inferred from mutant phenotype
(Osouda et al., 2005, Lenz-Bohme et al., 1997)
nuclear membrane organization
inferred from direct assay
(Prufert et al., 2004)
nuclear migration
inferred from mutant phenotype
(Patterson et al., 2004)
nuclear pore distribution
inferred from mutant phenotype
(Lenz-Bohme et al., 1997)
nucleus organization
inferred from mutant phenotype
(assigned by UniProt )
(Wagner et al., 2004)
positive regulation of actin filament polymerization
inferred from mutant phenotype
(assigned by UniProt )
(Dopie et al., 2015)
positive regulation of cytokinesis, actomyosin contractile ring assembly
inferred from mutant phenotype
(assigned by UniProt )
(Hayashi et al., 2016)
positive regulation of protein localization to nucleus
inferred from mutant phenotype
(assigned by UniProt )
(Hayashi et al., 2016)
positive regulation of spindle assembly
inferred from mutant phenotype
(assigned by UniProt )
(Hayashi et al., 2016)
protein localization to nuclear envelope
inferred from mutant phenotype
(Wagner et al., 2004)
spermatocyte division
inferred from mutant phenotype
(assigned by UniProt )
(Hayashi et al., 2016)
spermatogenesis
inferred from mutant phenotype
(Chen et al., 2013)
terminal branching, open tracheal system
inferred from mutant phenotype
(Guillemin et al., 2001)
Terms Based on Predictions or Assertions (0 terms)
Cellular Component (6 terms)
Terms Based on Experimental Evidence (6 terms)
CV Term
Evidence
References
lamin filament
inferred from direct assay
(Klapper et al., 1997)
nuclear envelope
inferred from direct assay
(Verboon et al., 2015, Schulze et al., 2009, Pilot et al., 2006, Wagner et al., 2004)
nuclear envelope lumen
inferred from direct assay
(assigned by UniProt )
(Harel et al., 1989)
nuclear lamina
inferred from direct assay
(assigned by UniProt )
(Hayashi et al., 2016)
inferred from direct assay
(Shevelyov et al., 2009, Riemer et al., 1995)
nucleus
inferred from direct assay
(Furukawa et al., 2003)
colocalizes_with spindle envelope
inferred from direct assay
(assigned by UniProt )
(Hayashi et al., 2016)
Terms Based on Predictions or Assertions (1 term)
CV Term
Evidence
References
lamin filament
traceable author statement
(Smith and Fisher, 1989)
Expression Data
Expression Summary Ribbons
Colored tiles in ribbon indicate that expression data has been curated by FlyBase for that anatomical location. Colorless tiles indicate that there is no curated data for that location.
For complete stage-specific expression data, view the modENCODE Development RNA-Seq section under High-Throughput Expression below.
Transcript Expression
in situ
Stage
Tissue/Position (including subcellular localization)
Reference
embryonic stage 1 -- 3
organism

Comment: maternally deposited

(Fisher et al., 2012)
embryonic stage 4 -- 6
organism | ubiquitous
(Fisher et al., 2012)
embryonic stage 7 -- 8
organism | ubiquitous
(Fisher et al., 2012)
embryonic stage 9 -- 10
organism | ubiquitous
(Fisher et al., 2012)
embryonic stage 11 -- 12
organism | ubiquitous
(Fisher et al., 2012)
embryonic stage 13 -- 16
organism | ubiquitous
(Fisher et al., 2012)
northern blot
Stage
Tissue/Position (including subcellular localization)
Reference
embryonic stage
(Riemer et al., 1995)
embryonic stage -- adult stage
(Riemer et al., 1995, Gruenbaum et al., 1988)
Additional Descriptive Data
The 3.0 kb Lam transcript is expressed at all stages, from embryo to adult. Although the 2.8 kb Lam transcript predominates in late oogenesis and early embryogenesis, the 3.0 kb transcript predominates starting at 2-3 hours of embryogenesis. Both transcripts encode the same polypeptide, and differ in their 3'-untranslated regions.
(Gruenbaum et al., 1988)
Marker for
 
Subcellular Localization
CV Term
Polypeptide Expression
immunolocalization
Stage
Tissue/Position (including subcellular localization)
Reference
embryonic stage -- adult stage
(Ashery-Padan et al., 1997)
embryonic stage 12 -- 13
organism
(Harel et al., 1989)
embryonic stage 14
Malpighian tubule Type I cell
(Campbell et al., 2010)
Malpighian tubule Type II cell
(Campbell et al., 2010)
prepupal stage P4 -- pupal stage P5
salivary gland
• nucleus

Comment: 8-14 hr APF; full-length 76 kD Lamin

(Martin and Baehrecke, 2004)
pupal stage P5
salivary gland

Comment: 12-14 hr APF; cleaved 45 kD Lamin

(Martin and Baehrecke, 2004)
spermatogenesis & adult stage | male
spermatid cyst
(Arama et al., 2003)
adult stage | male & spermatogenesis
cyst progenitor cell
(Chen et al., 2013)
cyst cell
(Chen et al., 2013)
oogenesis
(Ashery-Padan et al., 1997)
mass spectroscopy
Stage
Tissue/Position (including subcellular localization)
Reference
adult stage
adult head
(Aradska et al., 2015)
day 7 of adulthood -- day 49 of adulthood
adult heart
(Cammarato et al., 2011)
western blot
Stage
Tissue/Position (including subcellular localization)
Reference
embryonic stage
(Riemer et al., 1995)
embryonic stage -- adult stage
(Riemer et al., 1995)
larval stage
(Riemer et al., 1995)
prepupal stage P4 -- pupal stage P5
salivary gland

Comment: 8-14 hr APF; full-length 76 kD Lamin

(Martin and Baehrecke, 2004)
pupal stage P5
salivary gland

Comment: 12-14 hr APF; cleaved 45 kD Lamin

(Martin and Baehrecke, 2004)
Additional Descriptive Data
Lam protein is a nuclear envelope polypeptide which remains in an envelope-like structure enclosing the mitotic apparatus throughout mitosis.
(Campbell et al., 2010, Harel et al., 1989)
Full-length Lam is abundant at 8 hours APF, but decreases from 10-12 hours APF, and is at low to absent levels at 14 hours APF. Cleaved Lam is observed starting at 10 hours APF, and is abundant by 14 hours APF.
(Martin and Baehrecke, 2004)
Lam protein is a component of the individualization complex in late spermatogenesis.
(Arama et al., 2003)
Between stages S4 and S6-S7 of oogenesis, Lam protein localizes to the nuclear periphery in all cell types, but after stage S6-S7, nucleoplasmic and cytoplasmic accumulation is also observed. During larval, pupal and adult stages Lam protein localizes to the nucleus of most cells. No Lam protein is detected during stages 6-11 of spermiogenesis.
(Ashery-Padan et al., 1997, Riemer et al., 1995)
Lam protein is nuclear. There is some, but not complete, overlap in subcellular Lam and LamC protein expression.
(Riemer et al., 1995, Harel et al., 1989)
Marker for
 
Subcellular Localization
CV Term
Evidence
References
lamin filament
inferred from direct assay
(Klapper et al., 1997)
nuclear envelope
inferred from direct assay
(Verboon et al., 2015, Schulze et al., 2009, Pilot et al., 2006, Wagner et al., 2004)
nuclear envelope lumen
inferred from direct assay
(assigned by UniProt )
(Harel et al., 1989)
nuclear lamina
inferred from direct assay
(assigned by UniProt )
(Hayashi et al., 2016)
inferred from direct assay
(Shevelyov et al., 2009, Riemer et al., 1995)
nucleus
inferred from direct assay
(Furukawa et al., 2003)
colocalizes_with spindle envelope
inferred from direct assay
(assigned by UniProt )
(Hayashi et al., 2016)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools

GBrowse - Visual display of RNA-Seq signals

View Dmel\Lam in GBrowse 2
RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
Bulk Downloads
RNA-Seq RPKM values for all genes
Reference
See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
Developmental Proteome: Life Cycle
Developmental Proteome: Embryogenesis
External Data and Images
Linkouts
BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
Flygut - An atlas of the Drosophila adult midgut
Images
FlyExpress - Embryonic expression images (BDGP data)
  • Stages(s) 4-6
  • Stages(s) 7-8
  • Stages(s) 11-12
  • Stages(s) 13-16
FlyBase Wiki
Image Based Resources
Alleles, Insertions, and Transgenic Constructs
Classical and Insertion Alleles ( 23 )
For All Classical and Insertion Alleles Show
 
Other relevant insertions
Transgenic Constructs ( 21 )
For All Alleles Carried on Transgenic Constructs Show
Transgenic constructs containing/affecting coding region of Lam
Transgenic constructs containing regulatory region of Lam
Deletions and Duplications ( 26 )
Disrupted in
Df(2L)BSC169
(Christensen and Cook, 2006.7.11)
Df(2L)cl1
(BDGP Project Members, 1994-1999, Szidonya and Reuter, 1988, Szidonya and Reuter, 1988, Kotarski et al., 1983)
Df(2L)cl2
(Szidonya and Reuter, 1988, Szidonya and Reuter, 1988, Kotarski et al., 1983)
Df(2L)cl7
(BDGP Project Members, 1994-1999, Szidonya and Reuter, 1988, Szidonya and Reuter, 1988, Kotarski et al., 1983)
Df(2L)cl-h1
(Eberl et al., 1997, Szidonya and Reuter, 1988, Szidonya and Reuter, 1988)
Df(2L)cl-h2
(Eberl et al., 1997, Szidonya and Reuter, 1988, Szidonya and Reuter, 1988)
Df(2L)cl-h3
(Guillemin et al., 2001, Szidonya and Reuter, 1988, Szidonya and Reuter, 1988)
Df(2L)cl-h4
(Patterson et al., 2004, Eberl et al., 1997, Szidonya and Reuter, 1988, Szidonya and Reuter, 1988)
Df(2L)Exel6012
(Ryder, 2004.4.26)
Df(2L)Exel7023
(Ryder, 2004.4.26)
Df(2L)Gpdh1-A
(Osouda et al., 2005, Guillemin et al., 2001, Spradling et al., 1999, Guillemin, 1997.6.19, BDGP Project Members, 1994-1999, Kotarski et al., 1983)
Df(2L)PM101
(BDGP Project Members, 1994-1999)
Df(2L)sc19-4
(Szidonya and Reuter, 1988, Szidonya and Reuter, 1988)
Df(2L)sc19-12
(Szidonya and Reuter, 1988, Szidonya and Reuter, 1988)
Ts(YSt;2Lt)B236+Ts(YSt;2Rt)H164
(Kotarski et al., 1983)
Not disrupted in
Df(2L)2802
(Kotarski et al., 1983)
Df(2L)E110
(Spradling et al., 1999, BDGP Project Members, 1994-1999)
Df(2L)Gpdh1-75
(Kotarski et al., 1983)
Df(2L)Gpdh1-78
(Kotarski et al., 1983)
Df(2L)sc19-1
(Szidonya and Reuter, 1988, Szidonya and Reuter, 1988)
Df(2L)sc19-5
(Szidonya and Reuter, 1988, Szidonya and Reuter, 1988)
Df(2L)sc19-6
(Szidonya and Reuter, 1988, Szidonya and Reuter, 1988)
Df(2L)sc19-7
(Szidonya and Reuter, 1988, Szidonya and Reuter, 1988)
Df(2L)sc19-8
(Szidonya and Reuter, 1988, Szidonya and Reuter, 1988)
Df(2L)tkv2
(Spradling et al., 1999, BDGP Project Members, 1994-1999, Szidonya and Reuter, 1988, Szidonya and Reuter, 1988)
Df(2L)tkv3
(BDGP Project Members, 1994-1999, Szidonya and Reuter, 1988, Szidonya and Reuter, 1988)
Phenotypes
For more details about a specific phenotype click on the relevant allele symbol.
Lethality
Allele
lethal
lethal, with Scer\GAL4C23
lethal, with Scer\GAL4da.G32
lethal, with Scer\GAL4elav.PU
lethal, with Scer\GAL4how-24B
lethal, with Scer\GAL4moody.SPG
lethal, with Scer\GAL4repo.PU
lethal | pharate adult stage
lethal | pharate adult stage (with Df(2L)Gpdh1-A)
lethal | pupal stage
lethal | pupal stage (with Df(2L)Gpdh1-A)
lethal | recessive
lethal | temperature conditional, with Scer\GAL4arm.PS
lethal - all die before end of larval stage
lethal - all die before end of larval stage | recessive
lethal - all die during P-stage, with Scer\GAL4Mef2.PR
partially lethal, with Scer\GAL4GMR.PU
partially lethal | recessive
partially lethal - majority die
partially lethal - majority die (with Lam14)
partially lethal - majority die (with LamP)
partially lethal - majority die | larval stage
partially lethal - majority die | larval stage (with Df(2L)cl-h1)
partially lethal - majority die | pupal stage
partially lethal - majority die | pupal stage (with Df(2L)cl-h1)
partially lethal - majority live (with Df(2L)cl-h4)
partially lethal - majority live | recessive
viable
viable, with Dcr-2UAS.cDa, Scer\GAL4elav.PLu
viable, with Scer\GAL4He.PZ
viable, with Scer\GAL4nrv2.PS
viable, with Scer\GAL4pnr-MD237
viable, with Scer\GAL4tin.CΔ4
viable | temperature conditional, with Scer\GAL4arm.PS
Sterility
Allele
female sterile | recessive
fertile
male sterile | recessive
sterile
sterile (with Lam14)
sterile (with LamP)
sterile | female | germline clone | recessive
Other Phenotypes
Allele
cell growth defective
developmental rate defective
developmental rate defective (with Df(2L)Gpdh1-A)
enhancer of variegation, with In(1)wm4
flight defective
flightless | recessive
hyperplasia, with Scer\GAL4Cg.PA
hyperplasia (with LamD395)
hyperplasia (with LamK2)
hyperplasia | pupal stage
increased occurrence of cell division | pupal stage
locomotor behavior defective
locomotor behavior defective (with Df(2L)Gpdh1-A)
locomotor behavior defective (with Lam14)
locomotor behavior defective (with LamP)
locomotor behavior defective | adult stage, with Scer\GAL4Mhc.Switch.PO
locomotor behavior defective | adult stage, with Scer\GAL4Switch1.106
locomotor behavior defective | larval stage
locomotor behavior defective | recessive
short lived, with Scer\GAL4Mhc.Switch.PO
short lived, with Scer\GAL4Switch1.106
short lived, with Scer\GAL4Ugt36A1.PK
size defective | adult stage, with Scer\GAL4ey.PH
size defective | oogenesis | oogenesis
size defective | pupal stage
some die during larval stage
some die during pupal stage
some die during pupal stage (with Lam14)
some die during pupal stage (with LamP)
some die during third instar larval stage | recessive
suppressor of variegation, with Dp(?;2)bwD
suppressor of variegation, with In(2R)bwVDe2
uncoordinated, with Scer\GAL4Act5C.PI
uncoordinated | recessive
visible, with Scer\GAL4GMR.PU
visible, with Scer\GAL4pnr-MD237
visible | adult stage
visible | adult stage, with Scer\GAL4Act5C.PI
visible | adult stage, with Scer\GAL4ey.PH
visible | adult stage, with Scer\GAL4GMR.PF
visible | adult stage (with Df(2L)cl-h4)
wild-type
Phenotype manifest in
Allele
adult cuticle | pharate adult stage
adult fat body, with Scer\GAL4Switch1.106
adult midgut, with Scer\GAL4Cg.PA
adult midgut (with LamD395)
adult midgut (with LamK2)
adult midgut | pharate adult stage
adult pericardial cell, with Scer\GAL4Ugt36A1.PK
annulate lamellae
brain, with Scer\GAL4elav.Switch.PO
chaeta, with Scer\GAL4pnr-MD237
cyst cell, with Scer\GAL4NP1624
cyst cell (with Df(2L)cl-h1)
cystocyte & nucleus & pharate adult
cyst progenitor cell, with Scer\GAL4NP1624
cyst progenitor cell (with Df(2L)cl-h1)
dorsal appendage | germline clone
dorsal appendage | germline clone | supernumerary
dorsal branch primordium
egg | germline clone
egg chamber | germline clone
egg chamber | pharate adult stage
eye
eye, with Scer\GAL4Act5C.PI
eye, with Scer\GAL4ey.PH
eye, with Scer\GAL4GMR.PF
eye, with Scer\GAL4GMR.PU
eye (with Df(2L)cl-h4)
eye & nucleus & pharate adult
eye disc & nucleus | ectopic
eye disc & nucleus | ectopic (with Df(2L)cl-h4)
eye disc & nucleus | ectopic | somatic clone
gamete | female | germline clone
ganglionic branch primordium
germline stem cell, with Scer\GAL4NP1624
germline stem cell (with Df(2L)cl-h1)
gonad | male & pharate adult
longitudinal muscle, with Scer\GAL4Mhc.Switch.PO
longitudinal muscle | pharate adult stage
male germline cell (with Df(2L)cl-h1)
nuclear membrane
nuclear membrane | pharate adult stage
nuclear pore
nucleus & eye photoreceptor cell & eye disc
nucleus | adult stage, with Scer\GAL4elav.Switch.PO
nucleus | adult stage, with Scer\GAL4Mhc.Switch.PO
nucleus | adult stage, with Scer\GAL4Switch1.106
nurse cell | germline clone
ommatidium
oocyte
oocyte | germline clone
ovariole
ovary
ovary | pharate adult stage
pigment cell | pharate adult stage
presumptive embryonic/larval muscle system
presumptive embryonic/larval tracheal system
rhabdomere
rhabdomere (with Df(2L)cl-h4)
spermatozoon
subesophageal ganglion | pharate adult stage
trichogen cell, with Scer\GAL4pnr-MD237
Orthologs
Downloads
Download All DIOPT Orthologs
Download All OrthoDB Orthologs
Human Orthologs (via DIOPT v7.1)
Homo sapiens (Human) (35)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Source
Compara
eggNOG
Hieranoid
Homologene
Inparanoid
Isobase
OMA
OrthoDB
OrthoFinder
OrthoInspector
orthoMCL
Panther
Phylome
RoundUp
TreeFam
ZFIN
Alignment
Complementation?
Transgene?
Hsap\LMNA
13 of 15
Yes
Yes
 
Hsap\LMNB1
12 of 15
No
Yes
 
Hsap\LMNB2
11 of 15
No
Yes
 
Hsap\CFAP53
1 of 15
No
Yes
Hsap\DES
1 of 15
No
Yes
Hsap\GFAP
1 of 15
No
Yes
 
Hsap\INA
1 of 15
No
Yes
Hsap\KRT3
1 of 15
No
Yes
Hsap\KRT5
1 of 15
No
Yes
 
Hsap\KRT6B
1 of 15
No
Yes
Hsap\KRT6C
1 of 15
No
Yes
Hsap\KRT7
1 of 15
No
Yes
Hsap\KRT8
1 of 15
No
Yes
Hsap\KRT9
1 of 15
No
Yes
Hsap\KRT10
1 of 15
No
Yes
Hsap\KRT12
1 of 15
No
Yes
Hsap\KRT13
1 of 15
No
Yes
Hsap\KRT14
1 of 15
No
Yes
 
Hsap\KRT15
1 of 15
No
Yes
Hsap\KRT16
1 of 15
No
Yes
Hsap\KRT17
1 of 15
No
Yes
Hsap\KRT19
1 of 15
No
Yes
Hsap\KRT31
1 of 15
No
Yes
Hsap\KRT33A
1 of 15
No
Yes
Hsap\KRT33B
1 of 15
No
Yes
Hsap\KRT35
1 of 15
No
Yes
Hsap\KRT75
1 of 15
No
Yes
Hsap\KRT76
1 of 15
No
Yes
Hsap\LMNTD1
1 of 15
No
Yes
 
Hsap\LMNTD2
1 of 15
No
Yes
Hsap\LOC100653049
1 of 15
No
Yes
Hsap\NEFH
1 of 15
No
Yes
Hsap\NEFL
1 of 15
No
Yes
Hsap\NEFM
1 of 15
No
Yes
Hsap\VIM
1 of 15
No
Yes
Model Organism Orthologs (via DIOPT v7.1)
Mus musculus (laboratory mouse) (27)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Source
Compara
eggNOG
Hieranoid
Homologene
Inparanoid
Isobase
OMA
OrthoDB
OrthoFinder
OrthoInspector
orthoMCL
Panther
Phylome
RoundUp
TreeFam
ZFIN
Alignment
Complementation?
Transgene?
Mmus\Lmna
13 of 15
Yes
Yes
Mmus\Lmnb2
13 of 15
Yes
Yes
Mmus\Lmnb1
11 of 15
No
Yes
Mmus\Des
1 of 15
No
Yes
Mmus\Gfap
1 of 15
No
Yes
Mmus\Ina
1 of 15
No
Yes
Mmus\Krt5
1 of 15
No
Yes
Mmus\Krt6a
1 of 15
No
Yes
Mmus\Krt6b
1 of 15
No
Yes
Mmus\Krt8
1 of 15
No
Yes
Mmus\Krt13
1 of 15
No
Yes
Mmus\Krt14
1 of 15
No
Yes
Mmus\Krt15
1 of 15
No
Yes
Mmus\Krt16
1 of 15
No
Yes
Mmus\Krt17
1 of 15
No
Yes
Mmus\Krt19
1 of 15
No
Yes
Mmus\Krt35
1 of 15
No
Yes
Mmus\Krt36
1 of 15
No
Yes
Mmus\Krt42
1 of 15
No
Yes
Mmus\Krt75
1 of 15
No
Yes
Mmus\Krt79
1 of 15
No
Yes
Mmus\Krt90
1 of 15
No
Yes
Mmus\Lmntd1
1 of 15
No
Yes
Mmus\Lmntd2
1 of 15
No
Yes
Mmus\Nefl
1 of 15
No
Yes
Mmus\Nefm
1 of 15
No
Yes
Mmus\Vim
1 of 15
No
Yes
Rattus norvegicus (Norway rat) (25)
Rnor\Lmnb2
13 of 13
Yes
Yes
Rnor\Lmna
12 of 13
No
Yes
Rnor\Lmnb1
11 of 13
No
Yes
Rnor\Des
1 of 13
No
Yes
Rnor\Gfap
1 of 13
No
Yes
Rnor\Ina
1 of 13
No
Yes
Rnor\Krt4
1 of 13
No
Yes
Rnor\Krt5
1 of 13
No
Yes
Rnor\Krt8
1 of 13
No
Yes
Rnor\Krt13
1 of 13
No
Yes
Rnor\Krt14
1 of 13
No
Yes
Rnor\Krt15
1 of 13
No
Yes
Rnor\Krt16
1 of 13
No
Yes
Rnor\Krt17
1 of 13
No
Yes
Rnor\Krt19
1 of 13
No
Yes
Rnor\Krt20
1 of 13
No
Yes
Rnor\Krt35
1 of 13
No
Yes
Rnor\Krt36
1 of 13
No
Yes
Rnor\Krt75
1 of 13
No
Yes
Rnor\Lmntd1
1 of 13
No
Yes
Rnor\Lmntd2
1 of 13
No
Yes
Rnor\LOC683313
1 of 13
No
Yes
Rnor\Nefl
1 of 13
No
Yes
Rnor\Nefm
1 of 13
No
Yes
Rnor\Vim
1 of 13
No
Yes
Xenopus tropicalis (Western clawed frog) (18)
Xtro\lmnb3
9 of 12
Yes
Yes
Xtro\lmnb2
7 of 12
No
Yes
Xtro\lmna
6 of 12
No
Yes
Xtro\lmnb1
6 of 12
No
Yes
Xtro\des.1
1 of 12
No
Yes
Xtro\ina
1 of 12
No
Yes
Xtro\krt5.2
1 of 12
No
Yes
Xtro\krt5.7
1 of 12
No
Yes
Xtro\krt8
1 of 12
No
Yes
Xtro\krt17
1 of 12
No
Yes
Xtro\krt18
1 of 12
No
Yes
Xtro\krt19
1 of 12
No
Yes
Xtro\krt
1 of 12
No
Yes
Xtro\nefl
1 of 12
No
Yes
Xtro\nif
1 of 12
No
Yes
Xtro\prph
1 of 12
No
Yes
Xtro\vim.2
1 of 12
No
Yes
Xtro\vim
1 of 12
No
Yes
Danio rerio (Zebrafish) (29)
Drer\lmnb2
14 of 15
Yes
Yes
Drer\lmna
13 of 15
No
Yes
Drer\lmnl3
9 of 15
No
Yes
Drer\lmnb1
8 of 15
No
Yes
Drer\cyt1
1 of 15
No
Yes
Drer\desma
1 of 15
No
Yes
Drer\desmb
1 of 15
No
Yes
Drer\gfap
1 of 15
No
Yes
Drer\inaa
1 of 15
No
Yes
Drer\inab
1 of 15
No
Yes
Drer\krt4
1 of 15
No
Yes
Drer\krt5
1 of 15
No
Yes
Drer\krt8
1 of 15
No
Yes
Drer\krt15
1 of 15
No
Yes
Drer\krt91
1 of 15
No
Yes
Drer\krt97
1 of 15
No
Yes
Drer\nefla
1 of 15
No
Yes
Drer\neflb
1 of 15
No
Yes
Drer\nefma
1 of 15
No
Yes
Drer\nefmb
1 of 15
No
Yes
Drer\ngs
1 of 15
No
Yes
Drer\prph
1 of 15
No
Yes
Drer\si:dkey-222n6.2
1 of 15
No
Yes
Drer\vim
1 of 15
No
Yes
Drer\viml
1 of 15
No
Yes
Drer\zgc:65851
1 of 15
No
Yes
Drer\zgc:77517
1 of 15
No
Yes
Drer\zgc:171226
1 of 15
No
Yes
Drer\zgc:172323
1 of 15
No
Yes
Caenorhabditis elegans (Nematode, roundworm) (13)
Cele\lmn-1
10 of 15
Yes
Yes
Cele\ifa-1
6 of 15
No
Yes
Cele\ifa-3
6 of 15
No
Yes
Cele\ifb-1
6 of 15
No
Yes
Cele\ifa-4
4 of 15
No
Yes
Cele\ifd-1
4 of 15
No
Yes
Cele\ifd-2
4 of 15
No
Yes
Cele\mua-6
4 of 15
No
Yes
Cele\F10C1.8
3 of 15
No
Yes
Cele\ifb-2
3 of 15
No
Yes
Cele\ifc-2
3 of 15
No
Yes
Cele\ifp-1
3 of 15
No
Yes
Cele\ifc-1
2 of 15
No
Yes
Arabidopsis thaliana (thale-cress) (0)
No records found.
Saccharomyces cerevisiae (Brewer's yeast) (0)
No records found.
Schizosaccharomyces pombe (Fission yeast) (0)
No records found.
Orthologs in Drosophila Species (via OrthoDB v9.1) ( EOG091906QY )
Organism
Common Name
Gene
AAA Syntenic Ortholog
Multiple Dmel Genes in this Orthologous Group
Drosophila melanogaster
fruit fly
Dmel\Lam
Drosophila suzukii
Spotted wing Drosophila
Dsuz\DS10_00001076
Drosophila simulans
Dsim\GD28792
Drosophila sechellia
Dsec\GM18554
Drosophila erecta
Dere\GG25079
Drosophila yakuba
Dyak\GE25472
Drosophila ananassae
Dana\GF15147
Drosophila pseudoobscura pseudoobscura
Dpse\Lam
Drosophila persimilis
Dper\GL25852
Drosophila willistoni
Dwil\GK21105
Drosophila virilis
Dvir\GJ19583
Drosophila mojavensis
Dmoj\GI17991
Drosophila grimshawi
Dgri\GH10295
Orthologs in non-Drosophila Dipterans (via OrthoDB v9.1) ( EOG091502Y4 )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Musca domestica
House fly
Mdoa\17009441
Musca domestica
House fly
Mdoa\17018304
Glossina morsitans
Tsetse fly
Gmor\GMOY009248
Glossina morsitans
Tsetse fly
Gmor\GMOY006700
Lucilia cuprina
Australian sheep blowfly
Lcup\FF38_03013
Lucilia cuprina
Australian sheep blowfly
Lcup\FF38_06600
Mayetiola destructor
Hessian fly
Mdes\Mdes003075
Mayetiola destructor
Hessian fly
Mdes\Mdes012468
Aedes aegypti
Yellow fever mosquito
Aaeg\AAEL000335
Aedes aegypti
Yellow fever mosquito
Aaeg\AAEL003415
Anopheles darlingi
American malaria mosquito
Adar\ADAC000436
Anopheles gambiae
Malaria mosquito
Agam\AGAP011938
Anopheles gambiae
Malaria mosquito
Agam\AGAP008015
Culex quinquefasciatus
Southern house mosquito
Cqui\CPIJ010129
Culex quinquefasciatus
Southern house mosquito
Cqui\CPIJ003869
Orthologs in non-Dipteran Insects (via OrthoDB v9.1) ( EOG090W03QW )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Bombyx mori
Silkmoth
Bmor\BGIBMGA003652
Danaus plexippus
Monarch butterfly
Dple\DPOGS215772-PA
Heliconius melpomene
Postman butterfly
Hmel\HMEL014096
Apis florea
Little honeybee
Aflo\2432850596
Apis mellifera
Western honey bee
Amel\GB49353
Bombus impatiens
Common eastern bumble bee
Bimp\BIMP24999
Bombus terrestris
Buff-tailed bumblebee
Bter\15206012
Linepithema humile
Argentine ant
Lhum\LH21895
Megachile rotundata
Alfalfa leafcutting bee
Mrot\MROTU:002dd1
Nasonia vitripennis
Parasitic wasp
Nvit\Nasvi2EG004333
Dendroctonus ponderosae
Mountain pine beetle
Dpod\YQE_08347
Tribolium castaneum
Red flour beetle
Tcas\GLEAN_15134
Pediculus humanus
Human body louse
Phum\PHUM039180
Rhodnius prolixus
Kissing bug
Rpro\RPRC004300
Cimex lectularius
Bed bug
Clec\CLEC006738
Acyrthosiphon pisum
Pea aphid
Apim\ACYPI007590
Acyrthosiphon pisum
Pea aphid
Apim\ACYPI001798
Acyrthosiphon pisum
Pea aphid
Apim\ACYPI33513
Zootermopsis nevadensis
Nevada dampwood termite
Znev\Znev_08588
Orthologs in non-Insect Arthropods (via OrthoDB v9.1) ( EOG090X03NX )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Strigamia maritima
European centipede
Smar\SMAR001203
Ixodes scapularis
Black-legged tick
Isca\ISCW000339
Stegodyphus mimosarum
African social velvet spider
Smim\KFM76513.1
Stegodyphus mimosarum
African social velvet spider
Smim\KFM68686.1
Tetranychus urticae
Two-spotted spider mite
Turt\tetur06g02740
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_346950
Orthologs in non-Arthropod Metazoa (via OrthoDB v9.1) ( EOG091G05LK )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Lmn
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Nefl
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Lmnb
Ciona intestinalis
Vase tunicate
Cint\LOC100175966
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000000897
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000001690
Paralogs
Downloads
Download All DIOPT Paralogs
Paralogs (via DIOPT v7.1)
Drosophila melanogaster (Fruit fly) (1)
Gene Symbol
Score
Source
Compara
eggNOG
Homologene
Inparanoid
Isobase
OrthoDB
OrthoFinder
orthoMCL
Panther
RoundUp
Alignment
LamC
9 of 10
Human Disease Associations
FlyBase Human Disease Model Reports
Disease Model Summary Ribbon
Disease Ontology (DO) Annotations
Models Based on Experimental Evidence ( 0 )
Allele
Disease
Evidence
References
Potential Models Based on Orthology ( 9 )
Modifiers Based on Experimental Evidence ( 0 )
Allele
Disease
Interaction
References
Comments on Models/Modifiers Based on Experimental Evidence ( 0 )
 
Disease Associations of Human Orthologs (via DIOPT v7.1 and OMIM)
Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
Homo sapiens (Human)
Gene name
Score
OMIM
OMIM Phenotype
DO term
Complementation?
Transgene?
LMNA; lamin A/C
13 of 15
150330
 
LMNB1; lamin B1
12 of 15
150340
 
LMNB2; lamin B2
11 of 15
150341
     
    Functional Complementation Data
    Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
    Interactions
    Summary of Physical Interactions
    esyN Network Diagram
    Show neighbor-neighbor interactions:
    Select Layout:
    Legend:
    Protein
    RNA
    Selected Interactor(s)
    Interactions Browser
    View in Interactions Browser
    Please see the Physical Interaction reports below for full details
    protein-protein
    Physical Interaction
    Assay
    References
    Lam
    two hybrid, cosedimentation, western blot, inferred by author
    (Zaremba-Czogalla et al., 2012, Schulze et al., 2009, Stuurman et al., 1999, Goldberg et al., 1998)
    Lam - AGO2
    anti bait coimmunoprecipitation, Identification by mass spectrometry
    (Nazer et al., 2018)
    Lam - BicD
    two hybrid, pull down, western blot
    (Stuurman et al., 1999)
    Lam - Brca2
    pull down, anti tag western blot, anti bait coimmunoprecipitation, western blot, ion exchange chromatography, peptide massfingerprinting, anti tag coimmunoprecipitation
    (Kusch, 2015)
    Lam - Dlc90F
    experimental knowledge based
    (Guruharsha et al., 2011)
    Lam - JIL-1
    pull down, western blot, two hybrid, anti bait coimmunoprecipitation
    (Bao et al., 2005)
    Lam - LBR
    solid phase assay, anti bait coimmunoprecipitation, western blot, autoradiography
    (Wagner et al., 2004)
    Lam - LamC
    two hybrid
    (Schulze et al., 2009)
    Lam - MAN1
    anti bait coimmunoprecipitation, western blot, two hybrid
    (Pinto et al., 2008, Wagner et al., 2006)
    Lam - Mkrn1
    experimental knowledge based
    (Guruharsha et al., 2011)
    Lam - Nup153
    anti bait coimmunoprecipitation, western blot
    (Chen et al., 2013)
    Lam - Ote
    two hybrid, anti tag coimmunoprecipitation, western blot, experimental knowledge based, anti bait coimmunoprecipitation
    (Habermann et al., 2012, Guruharsha et al., 2011, Goldberg et al., 1998)
    Lam - Pen
    affinity chromatography technology, Identification by mass spectrometry
    (Virágh et al., 2012)
    Lam - RPA2
    experimental knowledge based
    (Guruharsha et al., 2011)
    Lam - Rab5
    pull down, western blot, affinity chromatography technology, Identification by mass spectrometry
    (Capalbo et al., 2011)
    Lam - RpA-70
    experimental knowledge based
    (Guruharsha et al., 2011)
    Lam - RpII215
    anti bait coimmunoprecipitation, Identification by mass spectrometry
    (Nazer et al., 2018)
    Lam - Topors
    anti bait coimmunoprecipitation, western blot, two hybrid
    (Capelson and Corces, 2005)
    Lam - baf
    anti tag coimmunoprecipitation, anti tag western blot
    (Mehsen et al., 2018)
    Lam - bocks
    two hybrid, experimental knowledge based
    (Guruharsha et al., 2011, Schulze et al., 2009)
    Lam - cnn
    anti bait coimmunoprecipitation, peptide massfingerprinting
    (Habermann et al., 2012)
    Lam - fs(1)Ya
    two hybrid
    (Goldberg et al., 1998)
    Lam - mud
    anti bait coimmunoprecipitation, anti tag western blot, affinity chromatography technology, Identification by mass spectrometry
    (Capalbo et al., 2011)
    Lam - smt3
    anti tag coimmunoprecipitation, comigration in sds page, anti tag western blot
    (Pirone et al., 2017)
    Lam - sphe
    experimental knowledge based
    (Guruharsha et al., 2011)
    Lam - tws
    anti tag coimmunoprecipitation, anti tag western blot
    (Mehsen et al., 2018)
    Lam - wash
    pull down, western blot, anti bait coimmunoprecipitation, proximity ligation assay
    (Verboon et al., 2015)
    Lam - wge
    pull down, western blot
    (Masuko et al., 2018)
    RNA-protein
    Physical Interaction
    Assay
    References
    Lam - nonA
    anti bait coimmunoprecipitation, quantitative reverse transcription pcr
    (Kozlova et al., 2006)
    Summary of Genetic Interactions
    esyN Network Diagram
    esyN Network Key:
    Suppression
    Enhancement
    View in Interactions Browser
    Please look at the allele data for full details of the genetic interactions
    Starting gene(s)
    Interaction type
    Interacting gene(s)
    Reference
    Lam
    suppressible
    EcR
    (Osouda et al., 2005)
    Lam
    suppressible
    key
    (Chen et al., 2014)
    Lam
    suppressible
    LamC
    (Chen et al., 2013)
    Lam
    suppressible
    PGRP-LB|PGRP-SC2
    (Chen et al., 2014)
    Lam
    suppressible
    rl
    (Chen et al., 2013)
    Lam
    suppressible
    Su(var)205
    (Chen et al., 2014)
    Starting gene(s)
    Interaction type
    Interacting gene(s)
    Reference
    hb
    enhanceable
    Lam
    (Kohwi et al., 2013)
    klar
    enhanceable
    Lam
    (Patterson et al., 2004)
    External Data
    Subunit Structure (UniProtKB)
    Interacts directly with LBR (PubMed:15054108). Interacts with MAN1 (PubMed:16439308). Interacts with Ote (PubMed:9632815, PubMed:22751930).
    (UniProt, P08928 )
    Linkouts
    BioGRID - A database of protein and genetic interactions.
    DroID - A comprehensive database of gene and protein interactions.
    InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.
    MIST (protein-protein) - An integrated Molecular Interaction Database
    Pathways
    Gene Group - Pathway Membership (FlyBase)
    External Data
    Linkouts
    KEGG Pathways - Wiring diagrams of molecular interactions, reactions and relations.
    Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.
    Genomic Location and Detailed Mapping Data
    Chromosome (arm)
    2L
    Recombination map
    2-17
    Cytogenetic map
    25E6-25E6
    Sequence location
    2L:5,542,480..5,546,642 [+]
    FlyBase Computed Cytological Location
    Cytogenetic map
    Evidence for location
    25E6-25E6
    Limits computationally determined from genome sequence between P{lacW}Hel25Ek11511 and P{lacW}l(2)k06502k06502
    Experimentally Determined Cytological Location
    Cytogenetic map
    Notes
    References
    25E5-25E6
    (determined by in situ hybridisation)
    (Spradling et al., 1999)
    25E4-25E6
    25F1--2
    (BDGP Project Members, 1994-1999)
    25F1-25F2
    (determined by in situ hybridisation)
    (Gruenbaum et al., 1988)
    Experimentally Determined Recombination Data
    Location
    2-17
    (FlyBase, 2016)
    2-18.5
    (Comeron et al., 2012)
    Left of (cM)
    Right of (cM)
    Notes
    Stocks and Reagents
    Stocks (18)
    Genomic Clones (12)
     

    Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

    cDNA Clones (105)
     

    Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

    cDNA clones, fully sequences
    BDGP DGC clones
    Other clones
      Drosophila Genomics Resource Center cDNA clones

      For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

      cDNA Clones, End Sequenced (ESTs)
      BDGP DGC clones
      Other clones
      RNAi and Array Information
      Linkouts
      DRSC - Results frm RNAi screens
      GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
      Antibody Information
      Laboratory Generated Antibodies
       
      monoclonal
      (Verboon et al., 2015)
      polyclonal
      (Zaremba-Czogalla et al., 2012, Gurudatta et al., 2010, Wagner et al., 2004)
      monoclonal antibody
      (Arama et al., 2003)
      Commercially Available Antibodies
       
      Developmental Studies Hybridoma Bank - Monoclonal antibodies for use in research
      Other Information
      Relationship to Other Genes
      Source for database identify of
      Source for identity of: Lam CG6944
      (Skupski, 1999.11)
      Source for database merge of
      Source for merge of: Lam l(2)04643
      (Spradling et al., 1999)
      Source for merge of: Lam misguided l(2)25Ec
      (Guillemin et al., 2001)
      Source for merge of: misguided l(2)25Ec
      (Guillemin, 2001.11.15)
      Additional comments
      Other Comments
      Lam is required in the cyst stem cell lineage but is dispensible in both the germline and the hub cells in the testis.
      (Chen et al., 2013)
      Lam is required to regulate organisation of the stem cell niche in the testis so that both the cyst stem cells and germline stem cells can assume proper interactions with the hub.
      (Chen et al., 2013)
      DNA-protein interactions: genome-wide binding profile assayed for Lam protein in Kc167 cells; see Chromatin_types_NKI collection report. Individual protein-binding experiments listed under "Samples" at GEO_GSE22069 (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE22069).
      (Filion et al., 2010)
      RNAi generated by PCR using primers directed to this gene causes a cell growth and viability phenotype when assayed in Kc167 and S2R+ cells.
      (Boutros et al., 2004)
      Lam is required for nuclear attachment to the microtubule organizing centre and for localization of klar to the nuclear envelope.
      (Patterson et al., 2004)
      Mutations in Lam disrupt the directed outgrowth of the cytoplasmic extensions from terminal cells of the tracheal system. Female germline mutant clones disrupt the dorsal-ventral polarity of the oocyte.
      (Guillemin et al., 2001)
      Lam protein interacts with both Ote and fs(1)Ya in a yeast two-hybrid system.
      (Goldberg et al., 1998)
      Identification: Enhancer trap expression pattern survey for loci expressed in the ring gland.
      (Harvie et al., 1998)
      Biochemical techniques reveal that in living cells lamins are closely associated with both DNA and RNA.
      (Rzepecki et al., 1998)
      The Lam gene product is essential for the structural integrity of the nuclear envelope and for the correct integration of nuclear pore complexes into the nuclear membrane.
      (Lenz-Bohme et al., 1997)
      Recruitment of fs(1)Ya and Lam to the male pronucleus occurs prior to or during the early stages of pronuclear migration and this accompanies or requires reorganisation of the sperm nucleus.
      (Liu et al., 1997)
      Region of a DNA fragment, λ20p1.4, which is a moderately repetitive sequence of the genome present in about 120 copies per haploid genome, polymerises with purified Lam.
      (Bogachev et al., 1996)
      The alpha-helical rod domain of Lam is sufficient for the specific interaction with the M/SAR fragment of ftz. For this specific interaction to occur it is essential that Lam is organised above the level of the dimer.
      (Zhao et al., 1996)
      Identified as being specifically expressed in the terminal cells of the developing tracheal system and required for the formation and outgrowth of the terminal branches.
      (Guillemin and Krasnow, 1995)
      Monoclonal antibody ADL84 is specific for Lam Dm1 and does not bind Lam Dm2. The antibody demonstrates that isolated interphase Lams Dm1 and Dm2 occur as mixed dimers, indicating random interactions. Mapping of the epitope for ADL84 shows Lam Dm2-specific phosphorylation takes place in the amino terminal head domain, most likely at Ser25.
      (Stuurman et al., 1995)
      Nuclear assembly has been followed in a cell free system: the Lam gene product plays essential role in nuclear envelope assembly.
      (Ulitzur et al., 1992)
      Three isoforms of Lam protein have been purified and their activity in vitro has been studied.
      (Lin and Fisher, 1990)
      Lam has been cloned and sequenced.
      (Osman et al., 1990)
      Some Lam protein is apparently retained in an envelope-like structure throughout mitosis in early Drosophila embryos.
      (Harel et al., 1989)
      A soluble isoform of Lam protein has been identified in the extracts of cultured cells blocked in mitosis. This isoform is the only species detectable in late-stage egg chambers and early embryos. The conversion of nuclear isoforms of Lam protein to this soluble isoform is mediated by a specific rearrangement of phosphate groups rather than large net changes in the levels of Lam protein phosphorylation. The residues involved in the phosphorylation/dephosphorylation reactions have been tentatively mapped within the fragment containing amino acids 385-547.
      (Smith and Fisher, 1989)
      l(2)25Ec was included as part of a study of the 24D4--25F2 region.
      (Szidonya and Reuter, 1988)
      Gene identified by screening a lambda-gt11 cDNA expression library, constructed from early embryonic mRNA, with monoclonal antibodies against Drosophila lamin. The structural gene for nuclear lamin. Translated as a prolamin of apparent molecular mass of 76kD, which is quickly processed to a 74kD species, presumably by proteolysis. The processed polypeptide is assembled into the nuclear envelope, where it becomes phosphorylated and again attains a mass of 76kD (Smith, Gruenbaum, Berrios, and Fisher, 1987).
      Origin and Etymology
      Discoverer
      Etymology
      The gene is named "misguided" because terminal branches of the tracheal system do not follow the normal patterns of projection during branch outgrowth in mutants.
      (Guillemin et al., 2001)
      Identification
      External Crossreferences and Linkouts ( 68 )
      Sequence Crossreferences
      NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
      GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
      GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.
      RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
      UniProt/Swiss-Prot - Manually annotated and reviewed records of protein sequence and functional information
      UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information
      Other crossreferences
      BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
      Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones
      Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
      Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
      Flygut - An atlas of the Drosophila adult midgut
      GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
      iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)
      InterPro - A database of protein families, domains and functional sites
      KEGG Genes - Molecular building blocks of life in the genomic space.
      KEGG Pathways - Wiring diagrams of molecular interactions, reactions and relations.
      modMine - A data warehouse for the modENCODE project
      Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.
      Linkouts
      BioGRID - A database of protein and genetic interactions.
      DroID - A comprehensive database of gene and protein interactions.
      DRSC - Results frm RNAi screens
      Developmental Studies Hybridoma Bank - Monoclonal antibodies for use in research
      FLIGHT - Cell culture data for RNAi and other high-throughput technologies
      FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
      FlyMine - An integrated database for Drosophila genomics
      Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution
      InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.
      KEGG Pathways - Wiring diagrams of molecular interactions, reactions and relations.
      MIST (protein-protein) - An integrated Molecular Interaction Database
      Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.
      Synonyms and Secondary IDs (73)
      Reported As
      Symbol Synonym
      2459
      (Harvie et al., 1998)
      74/76
      (Filson et al., 1985)
      CG6944
      (Yamaguchi and Takashima, 2018, Kolkhof et al., 2017, Hosono et al., 2015, Aoki et al., 2012, Cammarato et al., 2011, Ni et al., 2011.7.19, Müller et al., 2010, Ni et al., 2010.12.1, Keleman et al., 2009.8.5, Hughes et al., 2008, Ni et al., 2008, Quinones-Coello, 2007, Stuart et al., 2007, Cermelli et al., 2006)
      D5
      (Stuurman et al., 1999)
      Dm0
      (Herrmann and Strelkov, 2011)
      DMO
      (Stuurman et al., 1996)
      Dm
      (Pałka et al., 2018, Rzepecki and Gruenbaum, 2018, Ulitzur et al., 1997)
      Dm(0)
      (Marshall, 2003)
      Dm0
      (Garreau-Balandier et al., 2014, Pindyurin et al., 2007, Brandt, 2006, Brandt et al., 2006, Pickersgill et al., 2006, Goldstein and Gunawardena, 2000, de Saint Phalle et al., 1999, de Saint Phalle et al., 1999, Berrios and Fisher, 1998, Stuurman, 1994.1.13)
      Dm1
      (Berrios and Fisher, 1998)
      Dm2
      (Berrios and Fisher, 1998)
      Dm0
      (Radermacher et al., 2014, Beard et al., 2008, Melcer et al., 2007, Schulze et al., 2005, Royzman et al., 2002, Loppin et al., 2001, Loppin et al., 2001, Wolfner and Wilson, 2001, Rzepecki and Fisher, 2000, Goldberg et al., 1999, Stuurman et al., 1999, Stuurman et al., 1999, Krohne et al., 1998, Rzepecki et al., 1998, Ashery-Padan et al., 1997, Lenz-Bohme et al., 1997, Sasse et al., 1997, Stuurman, 1997)
      Dm1
      (Rzepecki and Fisher, 2000, Rzepecki et al., 1998, Ulitzur et al., 1997, Lin and Fisher, 1990, Smith and Fisher, 1989)
      Dm2
      (Rzepecki and Fisher, 2000, Ulitzur et al., 1997, Lin and Fisher, 1990, Smith and Fisher, 1989)
      Dmmit
      (Rzepecki and Fisher, 2000, Lin and Fisher, 1990, Smith and Fisher, 1989)
      Dmo
      (Georgatos et al., 1994)
      DmLamin
      (Shareef et al., 2001)
      DmO
      (Polychronidou et al., 2010, Mills et al., 2006, Wagner et al., 2004, Kumar and Doumanis, 2000, Fraser et al., 1997)
      Dmo
      (Klapper et al., 1997)
      LAM
      (Pindyurin et al., 2016, Belyaeva et al., 2012, Filion et al., 2010, van Bemmel et al., 2010, van Steensel et al., 2010)
      Lam
      (Cornelison et al., 2019, Parey and Crombach, 2019, Zhao et al., 2019, Masuko et al., 2018, Yamaguchi and Takashima, 2018, Bussmann and Storkebaum, 2017, Fu et al., 2017, Pirone et al., 2017, Transgenic RNAi Project members, 2017-, Hosamani et al., 2016, Jana et al., 2016, Tran et al., 2016, Dietz et al., 2015, Chen et al., 2014, Kuang et al., 2014, Chen et al., 2013, Kwon et al., 2013, O'Sullivan et al., 2013, Taliaferro et al., 2013, Aoki et al., 2012, Habermann et al., 2012, Ranz et al., 2012, Timofeev et al., 2012, Belacortu et al., 2011, Friedman et al., 2011, Campbell et al., 2010, Kallappagoudar et al., 2010, Müller et al., 2010, Müller et al., 2010, Wagner et al., 2010, Mummery-Widmer et al., 2009, Shevelyov et al., 2009, de Wit et al., 2008, Bao et al., 2007, Buszczak et al., 2007, Kracklauer et al., 2007, Pindyurin et al., 2007, Quinones-Coello, 2007, Stuart et al., 2007, Christensen and Cook, 2006.7.11, Pickersgill et al., 2006, Schneider et al., 2006, Bao et al., 2005, Loop et al., 2004)
      Lam Dm0
      (Kim et al., 2015)
      Lam Dm0
      (Patterson et al., 2004)
      Lam(Dm0)
      (Kracklauer et al., 2007)
      LamDm0
      (Starr and Fischer, 2005)
      LamDm
      (Uchino et al., 2013, Onischenko et al., 2004)
      LamDm0
      (Jokhi et al., 2013, Kim et al., 2012)
      LamDm0
      (Shevelyov et al., 2009, Furukawa et al., 2003)
      LamDmo
      (Mikhaylova and Nurminsky, 2011)
      Lamin
      (Kusch, 2015, Matzat et al., 2012, Milon et al., 2012, Lancaster et al., 2010)
      Lamin B
      (Milon et al., 2012, Brandt et al., 2008)
      Lamin Dm0
      (Adolphsen et al., 2012, Reim et al., 1999)
      LaminB
      (Nazer et al., 2018)
      jf27
      (Eberl et al., 1997, Szidonya and Reuter, 1988, Szidonya and Reuter, 1988)
      l(2)04643
      (Gildea et al., 2000, Meister and Braun, 1995.10, BDGP Project Members, 1994-1999)
      l(2)25Ec
      l(2)gdh-7
      (Kotarski et al., 1983)
      l(2)gdh7
      l(2)jf27
      lam
      (Verboon et al., 2015, Markovic et al., 2009, Pavlovic et al., 2008, Muñoz-Alarcón et al., 2007, Cermelli et al., 2006, Munoz-Alarcon et al., 2006, Wilk et al., 2004, Maroni, 1994)
      lamDm0
      (Fischer et al., 2003)
      lamDm0
      (Gurudatta et al., 2010, Muñoz-Alarcón et al., 2007, Osouda et al., 2005)
      lamin
      (Dubois et al., 2016, Gistelinck et al., 2012, Hou et al., 2012, Milon et al., 2012, Doheny et al., 2008)
      lamin B
      (Brandt et al., 2008)
      lamin Dm0
      (Rohrbaugh et al., 2013, Wagner et al., 2004)
      lamin Dm0
      (Arama et al., 2003, Barkett et al., 2002, de Saint Phalle et al., 2002, Jackson et al., 2002, Cohen et al., 2001, Deng and Lin, 2001, Loppin et al., 2000, Guillemin et al., 1998, Riemer et al., 1995, Stuurman et al., 1995)
      lamin DmO
      (Sureka et al., 2018, Wagner et al., 2006)
      lamin-B
      (Liu and Jin, 2017, Karg et al., 2015)
      misg
      (Anonymous, 2001, Guillemin et al., 2001)
      nlam
      (Eberl et al., 1997)
      Name Synonyms
      B-type Lamin
      (Milon et al., 2012, Starr and Fischer, 2005)
      B-type lamin
      (Milon et al., 2012, Ranz et al., 2012, Pindyurin et al., 2007)
      Lamin
      (Kolesnikova et al., 2018, Lakhotia, 2017, Pirone et al., 2017, Sopko et al., 2015, Kuang et al., 2014, Matzat and Lei, 2014, Minakhina et al., 2014, Nakayama et al., 2014, Radermacher et al., 2014, Radermacher et al., 2014, Sitaram et al., 2014, Zhang et al., 2014, Daigle et al., 2013, Deng and Kerppola, 2013, Anand and Kai, 2012, Belyaeva et al., 2012, Florentin and Arama, 2012, Gutiérrez et al., 2012, Kim et al., 2012, Loh et al., 2012, Murray et al., 2012, Nir et al., 2012, Belacortu et al., 2011, Benchabane et al., 2011, Cammarato et al., 2011, Chang et al., 2011, Chen et al., 2011, Jepson et al., 2011, Klenov et al., 2011, Schönbauer et al., 2011, Bulchand et al., 2010, Gerbasi et al., 2010, McPhee et al., 2010, Siegrist et al., 2010, Taniue et al., 2010, van Steensel et al., 2010, Wang et al., 2010, Stern et al., 2009, Vilmos et al., 2009, Cinnamon et al., 2008, Fisher et al., 2008, Meignin and Davis, 2008, Bao et al., 2007, Franklin-Dumont et al., 2007, Gawlinski et al., 2007, Kind and Akhtar, 2007, Ko et al., 2007, Kurshakova et al., 2007, Lancaster et al., 2007, Manak et al., 2007, Peretz et al., 2007, Sabri et al., 2007, Kozlova et al., 2006, Pickersgill et al., 2006, Pilot et al., 2006, Staudt et al., 2006, Capelson and Corces, 2005, Minakhina et al., 2005, Rollins et al., 2004)
      Lamin B
      (Pałka et al., 2018, Buster et al., 2013, Kalverda et al., 2010)
      Lamin D
      (Pak et al., 2011, Vrailas and Moses, 2006)
      Lamin Do
      (Bosveld et al., 2008)
      Lamin Dm0
      (Liu et al., 2013, Rohrbaugh et al., 2013, Zhang et al., 2013, Matsui et al., 2011, Matsui et al., 2007, Padiath et al., 2006, Pinto et al., 2006, Martin and Baehrecke, 2004, Smith et al., 2004)
      Lamin Dm0
      (Dialynas et al., 2010, Gurudatta et al., 2010, Schulze et al., 2009, Schulze et al., 2008, Bass et al., 2007, Tanner et al., 2007)
      Lamin DmO
      (Creagh et al., 2009, Schwenkert et al., 2008)
      Lamin Dmo
      (Florentin and Arama, 2012, Zimek and Weber, 2011, Kessler and Müller, 2009)
      Lamin-B
      (Civelekoglu-Scholey et al., 2010)
      LaminDm
      (Chang et al., 2011)
      LaminDm0
      (Gurudatta et al., 2012, Baxley et al., 2011, Urwyler et al., 2007)
      intermediate filament-like lamina
      (Heun et al., 2001)
      lamin
      (Khoroshko et al., 2018, Kotov et al., 2016, Álvarez-Fernández et al., 2015, Garreau-Balandier et al., 2014, Neuman et al., 2014, Sanhueza et al., 2014, Zhang et al., 2014, Kohwi et al., 2013, Zhan et al., 2013, Kadir et al., 2012, Miguel et al., 2012, Olenkina et al., 2012, Wang et al., 2012, Yao et al., 2012, Barry et al., 2011, Hadjieconomou et al., 2011, Lanson et al., 2011, Maruyama et al., 2011, Desai et al., 2009, Häsemeyer et al., 2009, Kirchner et al., 2008, Oliver, 2008, Yapici et al., 2008, Berry and Baehrecke, 2007, Gawlinski et al., 2007, Peterson et al., 2007, Cermelli et al., 2006, Mills et al., 2006, Muraro and Moffat, 2006, Xylourgidis et al., 2006, Boykova et al., 2005, Crevel et al., 2005, Wilson, 2005, Daish et al., 2004, McHugh et al., 2004, Wagner et al., 2004, Fisher et al., 2001, Hutchison et al., 2001, Lee et al., 2000, Saunders and Cohen, 1999, Gigliotti et al., 1998, Goldberg et al., 1998, Likhacheva et al., 1998, Rzepecki et al., 1998, Lenz et al., 1995, Harel et al., 1989, Smith and Fisher, 1989)
      lamin A
      (Prokopenko et al., 1999)
      lamin B
      (Zhang et al., 2017, Herrmann and Strelkov, 2011, Wang et al., 2011, Lince-Faria et al., 2009, Brandt et al., 2008, Pathak et al., 2007, Brandt et al., 2006)
      lamin D0
      (Karsten et al., 2006)
      lamin Dm0
      (Herrmann and Strelkov, 2011)
      lamin Dm0
      (Graham et al., 2006)
      lamin Dm
      (Zaremba-Czogalla et al., 2011)
      lamin Dm0
      (Dialynas et al., 2012, Virágh et al., 2012, Sharakhov et al., 2008, Wasser et al., 2007, Schulze et al., 2006, McHugh et al., 2004, Prufert et al., 2004, Prokopenko et al., 1999)
      lamin Dm0
      (Barton et al., 2014, Gurudatta et al., 2010, Furukawa et al., 2009, Pinto et al., 2008, Mattout et al., 2007, Melcer et al., 2007, Melcer and Gruenbaum, 2006, Bao et al., 2005, Mani et al., 2003)
      lamin Dm[[0]]
      (Bao et al., 2006)
      lamin-B
      (Chen et al., 2015)
      lethal(2)25Ec
      misguided
      (Anonymous, 2001, Guillemin et al., 2001, Guillemin, 1995)
      misrouted
      (Guillemin and Krasnow, 1995)
      n-lamin
      (Petersen et al., 1997)
      nuclear lamin
      (Martin et al., 2007, Xu et al., 2004, Baehrecke, 2003, Fischer et al., 2003)
      α-Lamin
      (Uv et al., 2000)
      Secondary FlyBase IDs
      • FBgn0001930
      • FBgn0010582
      • FBgn0014344
      Datasets (2)
      Study focus (2)
      Experimental Role
      Project
      Project Type
      Title
      • transgene_used
      FBGSE20313
      The insulator protein SU(HW) modulates nuclear lamina interactions of the Drosophila genome.
      • transgene_used
      FBGSE22069
      Protein profiling reveals five principal chromatin types in Drosophila cells.
      References (449)