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Gene Dmel\RpL36

General Information
Symbol	Dmel\RpL36	Species	D. melanogaster
Name	Ribosomal protein L36	Annotation symbol	CG7622
Feature type	protein_coding_gene	FlyBase ID	FBgn0002579
Gene Model Status	Current	Stock availability	5 publicly available
Also Known As	M(1)1B, M(1)Bld, EG:115C2.7
Genomic Location
Chromosome (arm)	X	Recombination map	1-0.0
Cytogenetic map	1B12-1B12	Sequence location	X:522,382..523,495 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Ribosomal protein L36 is referred to in FlyBase by the symbol Dmel\RpL36 (CG7622, FBgn0002579). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: structural constituent of ribosome. Based on sequence similarity, it is predicted to be involved in the biological process: translation. 8 alleles are reported. The phenotype of these alleles is annotated with: macrochaeta. It has 4 annotated transcripts and 4 annotated polypeptides. Protein features are: Ribosomal protein L36e. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of very high expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, during early pupal stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: High levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1624019_s_at completely aligns to an exonic region common to each of the 4 FlyBase-annotated transcript isoforms of RpL36. Gene sequence location is X:522382..523495.
User Contributed Data
	Beta version, feedback welcome
Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
Gene/Allele symbols may differ from current usage	M(1)1B Heterozygous deficiency for locus is extreme Minute of low viability. In Patterson's work, the nonappearance of Minutes led him to postulate a factor for viability (Vi). Eclosion delayed 76 hr (Ferrus, 1975, Genetics 79: 589-99). RK3A.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 1B12-1B12   Limits computationally determined from genome sequence between P{EP}svrEP356&P{EP}argEP452 and P{EP}DreddEP1412&P{EP}Suv4-20EP1216a
Experimentally Determined Cytological Location
Cytogenetic map Notes References 1B11-1B14   (determined by in situ hybridisation)   (Peter et al., 2002) 1B11-1B14   (determined by in situ hybridisation)   (Schaefer et al., 1999.12.2) 1B13-1C1     (Voelker et al., 1989)
Experimentally Determined Recombination Data
Location	1-0.0
Left of (cM)
Right of (cM)	sc (Garcia-Bellido, 1979)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\RpL36 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.50 Annotated transcripts do not represent all supported alternative splices within 5' UTR. Low-frequency RNA-Seq exon junction(s) not annotated.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) RpL36-RA FBtr0070155  NM_057281   547   115 RpL36-RB FBtr0070156  NM_166853   555   115 RpL36-RC FBtr0070158  NM_166854   592   115 RpL36-RD FBtr0070157  NM_166855   535   115
Additional Transcript Data & Comments
Reported size (kB)	3.5 (northern blot) (Voelker et al., 1989)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein RpL36-PA   FBpp0070150   13.5   115   11.95     NP_476629   AAN09019 RpL36-PB   FBpp0070151   13.5   115   11.95     NP_726686   AAF45531 RpL36-PC   FBpp0070153   13.5   115   11.95     NP_726687   AAN09020 RpL36-PD   FBpp0070152   13.5   115   11.95     NP_726688   AAN09021
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Ribosomal protein L36e (IPR000509)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA246543   AA735365   AA735514   AA801667   AA801701   AA803021   AA816274   AA990760   AE014298 AAF45531   AE014298 AAN09019   AE014298 AAN09020   AE014298 AAN09021   AF083547   AI061821   AI063135   AI113360   AI134335   AI237941   AI237989   AI238118   AI238129   AI238265   AI239056   AI258579   AI259679   AI259951   AI260580   AI260862   AI294284   AI294420   AI297759   AI403197   AI403611   AI403810   AI404123   AI405134   AI405641   AI513828   AI546170   AJ299997   AL031581 CAA20892   AY070831 AAL48453   AY231780   BE976469   BF498156   BG632526   BG633055   BG633903   BG636191   BG636307   BG639450   BG641137   BI164848   BI165735   BI166315   BI168755   BI170827   BI213459   BI214370   BI228334   BI230077   BI230286   BI239041   BI242864   BI243426   BI243792   BI243986   BI352045   BI352049   BI352067   BI352130   BI352179   BI352802   BI352815   BI352890   BI353302   BI353303   BI353424   BI353660   BI353915   BI354053   BI354781   BI355311   BI355385   BI355675   BI361952   BI366425   BI366433   BI366477   BI367668   BI371144   BI371756   BI371790   BI372208   BI372531   BI374009   BI374347   BI374475   BI375834   BI482258   BI483037   BI484133   BI485486   BI486170   BI563347   BI563826   BI564291   BI564474   BI564484   BI564580   BI565186   BI565357   BI565552   BI566183   BI566572   BI568027   BI568066   BI568176   BI568303   BI569438   BI569455   BI569806   BI569939   BI570067   BI570081   BI570088   BI570155   BI570297   BI570325   BI570338   BI570413   BI570436   BI570480   BI570573   BI571739   BI571763   BI571838   BI571879   BI572245   BI572391   BI574551   BI575445   BI575564   BI576072   BI576163   BI576299   BI576590   BI576596   BI577452   BI580283   BI581456   BI581458   BI581885   BI581983   BI582335   BI582417   BI583473   BI584387   BI584590   BI585625   BI585633   BI586812   BI587244   BI587353   BI587505   BI588829   BI589005   BI589413   BI589569   BI589773   BI590003   BI590344   BI590383   BI590978   BI591201   BI591241   BI591503   BI591818   BI592977   BI593132   BI593231   BI593275   BI593316   BI604384   BI604883   BI605175   BI605774   BI606441   BI606501   BI606572   BI607213   BI607610   BI607633   BI607820   BI608267   BI608991   BI609029   BI610655   BI610705   BI610852   BI611450   BI611971   BI612249   BI612527   BI612895   BI613094   BI613216   BI613646   BI613678   BI613875   BI614239   BI615019   BI615411   BI615562   BI615574   BI615576   BI615658   BI616985   BI618211   BI618325   BI618489   BI618943   BI619263   BI619537   BI620278   BI620433   BI620960   BI621009   BI621251   BI622072   BI622316   BI622402   BI622591   BI622595   BI622597   BI622902   BI622984   BI623150   BI623733   BI623836   BI624783   BI624918   BI625234   BI625269   BI625538   BI626019   BI626046   BI626205   BI626368   BI626604   BI626759   BI627133   BI627184   BI627253   BI627406   BI627589   BI627699   BI628446   BI629239   BI629544   BI629636   BI629697   BI629822   BI630246   BI630262   BI630455   BI630944   BI631523   BI634110   BI634175   BI634748   BI635375   BI635471   BP540529   BP541159   BP542228   BP542603   BP543167   BP543168   BP543986   BP543987   BP544278   BP544279   BP545240   BP545241   BP545628   BP545629   BP546032   BP546700   BP546906   BP547422   BP547778   BP548041   BP548896   BP548897   BP549226   BP550094   BP550095   BP550717   BP550718   BP551005   BP551260   BP551261   BP551444   BP552136   BP553239   BP553240   BP553281   BP553282   BP553543   BP553544   BP554218   BP554219   BP554779   BP554780   BP555020   BP555741   BP555742   BT029917   BX032725   CK604329   CK658107   CK659973   CK660406   CO153200   CO155185   CO155259   CO155638   CO155725   CO155774   CO155822   CO156890   CO157010   CO179759   CO179811   CO180808   CO181403   CO181584   CO182064   CO182667   CO182686   CO182834   CO183601   CO184222   CO184811   CO185198   CO185226   CO185599   CO191351   CO194228   CO194319   CO194913   CO195385   CO262229   CO282827   CO301640   CO309244   CO316540   CO317287   CO321433   CO326365   CO335652   CO335935   CO336117   CO336446   CO336694   CO336938   CO337785   CO337964   CO338104   CO338554   CO338557   DQ440277   EC056863   EC059031   EC062947   EC194517   EC215169   EC234470   EC238628   EC249847   EC252660   EC256825   EC261075   EC261135   EC261469   EC261674   EC262204   EC262233   EC262280   EC262660   EC262952   EC263452   EC264788   EC264797   EC265282   EC265429   EC265695   EC265916   EC265967   EC266001   EC266718   EC266888   EC267462   EC267866   EL873428   EL873544   EL875251   EL875252   EL875381   EL875382   EL875483   EL877782   EL883926   EL884101   EL884102   EL884226   ES696506   EV576233   EV576584   EV576851   EV579445   EV579641   EV582152   EV583407   EV583640   EV585055   EV585539   EV586982   EV587506   EV588047   EV588428   EV588512   EV588533   EV588563   EV588754   EV588997   EV589225   EV589248   EV589488   EV589568   EV589802   EV589833   EV589846   EV590274   EV590512   EV590931   EV591233   EV591419   EV591483   EV591542   EV591722   EV592196   EV592365   EV593855   EV594317   EV595654   EV596037   EV598022   EV598573   EV599012   EV600307   EV600780   GH748267   GH748586   GH749748   GH749941   GH751885   GH755124   GH757497   GH757920   GH758299   GH758851   GH761019   GH771353   GH772839   GH773189   GH773475   GH773922   GH774087   GH779976   GH784237   GH785131   GH785485   GH786047   GH786703   GH787714   GH789011   GH790497   GH790655   GH790949   GH793740   GH793853   GH795286   GH796454   GH797740   GH800028   GH802288   GH806164   GH806620   GH808738   GH810456   GH813694   GH814660   GH816884   GH818160   GH819238   GH821853   GH822143   GH822608   GH824941   GH830337   GH830929   GH831036   GH831968   GH832686   GH832945   GH833847   GH835166   GH837537   GH841997   GH842260   GH843967   GH848787   GH849097   GH851214   GH853259   GH853262   GH853461   GH857047   GH857254   GH857411   GH860259   GH861637   GH869894   GH873037   GH873562   GH877763   GH877909   GH881379   GH881750   GH882201   GH883026   GH883110   GH884145   GH885212   GH886730   GH888313   GH890791   GH891700   GH893488   GH893576   GH894601   GH898828   GH900053   GH900119   GH901543   GH904386   GH904432   GH904507   GH905159   GH905617   GH905909   GH909457   GH912296   GH912331   GH912912   GH913698   GH914743   GH914928   GH918571   GH918583   GH919407   GH924358   GH924858   GH925379   GH927020   GH927026   GH927347   GH927680   GH929216   GH929404   GH930193   GH931800   GH932241   GH937810   GH938907   U20543 AAA63151
UniProtKB/Swiss-Prot	P49630
UniProtKB/TrEMBL
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
No Assay Recorded Stage Tissue/Position (including subcellular localization) Reference adult stage     (Voelker et al., 1989) northern blot Stage Tissue/Position (including subcellular localization) Reference embryonic stage     (Voelker et al., 1989)
Additional Descriptive Data
	RpL36 transcripts are much more abundant in embryos than adults. (Voelker et al., 1989)
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 7 of adulthood -- day 49 of adulthood   adult heart   (Cammarato et al., 2011)
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
ribosome inferred from direct assay (Alonso and Santaren, 2006)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    2476.45 Larval Midgut    3920.7 Larval Hindgut    3472.8 Larval Malpighian Tubules    3724 Larval Fat Body    6137 Larval Salivary Gland    6454 Larval Trachea    5659.6 Larval Carcass    4073.175 Adult Head    4047.5 Adult Eye    5616.8 Adult Brain    3195.5 Adult Thoracic-Abdominal Ganglion    4248.2 Adult Crop    4750.7 Adult Midgut    4477 Adult Hindgut    4627.5 Adult Malpighian Tubules    3540.9 Adult Fat Body    4840.5 Adult Salivary Gland    9289.4 Adult Heart    5554.675 Adult VirginFemale Spermatheca    3821.9 Adult InseminatedFemale Spermatheca    4029.7 Adult Ovary    2740.5 Adult Testis    889.3 Adult Male Accessory Gland    6834.1 Adult Carcass    4737.5 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (2476.45) Larval Midgut  (3920.7) Larval Hindgut  (3472.8) Larval Malpighian Tubules  (3724) Larval Fat Body  (6137) Larval Salivary Gland  (6454) Larval Trachea  (5659.6) Larval Carcass  (4073.175) Adult Head  (4047.5) Adult Eye  (5616.8) Adult Brain  (3195.5) Adult Thoracic-Abdominal Ganglion  (4248.2) Adult Crop  (4750.7) Adult Midgut  (4477) Adult Hindgut  (4627.5) Adult Malpighian Tubules  (3540.9) Adult Fat Body  (4840.5) Adult Salivary Gland  (9289.4) Adult Heart  (5554.675) Adult VirginFemale Spermatheca  (3821.9) Adult InseminatedFemale Spermatheca  (4029.7) Adult Ovary  (2740.5) Adult Testis  (889.3) Adult Male Accessory Gland  (6834.1) Adult Carcass  (4737.5) Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System  (2476.45) Larval Midgut  (3920.7) Larval Hindgut  (3472.8) Larval Malpighian Tubules  (3724) Larval Fat Body  (6137) Larval Salivary Gland  (6454) Larval Trachea  (5659.6) Larval Carcass  (4073.175) Adult Head  (4047.5) Adult Eye  (5616.8) Adult Brain  (3195.5) Adult Thoracic-Abdominal Ganglion  (4248.2) Adult Crop  (4750.7) Adult Midgut  (4477) Adult Hindgut  (4627.5) Adult Malpighian Tubules  (3540.9) Adult Fat Body  (4840.5) Adult Salivary Gland  (9289.4) Adult Heart  (5554.675) Adult VirginFemale Spermatheca  (3821.9) Adult InseminatedFemale Spermatheca  (4029.7) Adult Ovary  (2740.5) Adult Testis    889.3 Adult Male Accessory Gland  (6834.1) Adult Carcass  (4737.5) Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    2476.45 Larval Midgut    3920.7 Larval Hindgut    3472.8 Larval Malpighian Tubules    3724 Larval Fat Body    6137 Larval Salivary Gland    6454 Larval Trachea    5659.6 Larval Carcass    4073.175 Adult Head    4047.5 Adult Eye    5616.8 Adult Brain    3195.5 Adult Thoracic-Abdominal Ganglion    4248.2 Adult Crop    4750.7 Adult Midgut    4477 Adult Hindgut    4627.5 Adult Malpighian Tubules    3540.9 Adult Fat Body    4840.5 Adult Salivary Gland    9289.4 Adult Heart    5554.675 Adult VirginFemale Spermatheca    3821.9 Adult InseminatedFemale Spermatheca    4029.7 Adult Ovary    2740.5 Adult Testis    889.3 Adult Male Accessory Gland    6834.1 Adult Carcass    4737.5 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    2476.45 Larval Midgut    3920.7 Larval Hindgut    3472.8 Larval Malpighian Tubules    3724 Larval Fat Body    6137 Larval Salivary Gland    6454 Larval Trachea    5659.6 Larval Carcass    4073.175 Adult Head    4047.5 Adult Eye    5616.8 Adult Brain    3195.5 Adult Thoracic-Abdominal Ganglion    4248.2 Adult Crop    4750.7 Adult Midgut    4477 Adult Hindgut    4627.5 Adult Malpighian Tubules    3540.9 Adult Fat Body    4840.5 Adult Salivary Gland    9289.4 Adult Heart    5554.675 Adult VirginFemale Spermatheca    3821.9 Adult InseminatedFemale Spermatheca    4029.7 Adult Ovary    2740.5 Adult Testis    889.3 Adult Male Accessory Gland    6834.1 Adult Carcass    4737.5 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (2476.45) Larval Midgut  (3920.7) Larval Hindgut  (3472.8) Larval Malpighian Tubules  (3724) Larval Fat Body  (6137) Larval Salivary Gland  (6454) Larval Trachea  (5659.6) Larval Carcass  (4073.175) Adult Head  (4047.5) Adult Eye  (5616.8) Adult Brain  (3195.5) Adult Thoracic-Abdominal Ganglion  (4248.2) Adult Crop  (4750.7) Adult Midgut  (4477) Adult Hindgut  (4627.5) Adult Malpighian Tubules  (3540.9) Adult Fat Body  (4840.5) Adult Salivary Gland  (9289.4) Adult Heart  (5554.675) Adult VirginFemale Spermatheca  (3821.9) Adult InseminatedFemale Spermatheca  (4029.7) Adult Ovary  (2740.5) Adult Testis  (889.3) Adult Male Accessory Gland  (6834.1) Adult Carcass  (4737.5) Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System  (2476.45) Larval Midgut  (3920.7) Larval Hindgut  (3472.8) Larval Malpighian Tubules  (3724) Larval Fat Body  (6137) Larval Salivary Gland  (6454) Larval Trachea  (5659.6) Larval Carcass  (4073.175) Adult Head  (4047.5) Adult Eye  (5616.8) Adult Brain  (3195.5) Adult Thoracic-Abdominal Ganglion  (4248.2) Adult Crop  (4750.7) Adult Midgut  (4477) Adult Hindgut  (4627.5) Adult Malpighian Tubules  (3540.9) Adult Fat Body  (4840.5) Adult Salivary Gland  (9289.4) Adult Heart  (5554.675) Adult VirginFemale Spermatheca  (3821.9) Adult InseminatedFemale Spermatheca  (4029.7) Adult Ovary  (2740.5) Adult Testis    889.3 Adult Male Accessory Gland  (6834.1) Adult Carcass  (4737.5) Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    2476.45 Larval Midgut    3920.7 Larval Hindgut    3472.8 Larval Malpighian Tubules    3724 Larval Fat Body    6137 Larval Salivary Gland    6454 Larval Trachea    5659.6 Larval Carcass    4073.175 Adult Head    4047.5 Adult Eye    5616.8 Adult Brain    3195.5 Adult Thoracic-Abdominal Ganglion    4248.2 Adult Crop    4750.7 Adult Midgut    4477 Adult Hindgut    4627.5 Adult Malpighian Tubules    3540.9 Adult Fat Body    4840.5 Adult Salivary Gland    9289.4 Adult Heart    5554.675 Adult VirginFemale Spermatheca    3821.9 Adult InseminatedFemale Spermatheca    4029.7 Adult Ovary    2740.5 Adult Testis    889.3 Adult Male Accessory Gland    6834.1 Adult Carcass    4737.5 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    4047.5   NA  Eye    5616.8   NA  Brain    3195.5   2476.45  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    4248.2   NA  Crop    4750.7   3920.7  Midgut    4477   3472.8  Hindgut    4627.5   3724  Malpighian Tubules    3540.9   6137  Fat Body    4840.5   6454  Salivary Gland    9289.4   NA  Heart    5554.675   5659.6  Trachea    NA   NA  VirginFemale Spermatheca    3821.9   NA  InseminatedFemale Spermatheca    4029.7   NA  Ovary    2740.5   NA  Testis    889.3   NA  Male Accessory Gland    6834.1   4073.175  Carcass    4737.5 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    1448 central nervous system, larvae L3    1325 central nervous system, pupae P8    645 head, virgin 1-day female    781 head, virgin 4-day female    1069 head, virgin 20-day female    1122 head, mated 1-day female    742 head, mated 4-day female    794 head, mated 20-day female    916 head, mated 1-day male    814 head, mated 4-day male    776 head, mated 20-day male    1155 salivary gland, larvae L3 wandering    960 salivary gland, white prepupae    2159 digestive system, larvae L3 wandering    1269 digestive system, 1-day adult    1156 digestive system, 4-day adult    851 digestive system, 20-day adult    920 fat body, larvae L3 wandering    882 fat body, white prepupae    721 fat body, pupae P8    2917 carcass, larvae L3 wandering    1450 carcass, 1-day adult    604 carcass, 4-day adult    675 carcass, 20-day adult    969 ovary, virgin 4-day female    1121 ovary, mated 4-day female    1062 testis, mated 4-day male    983 accessory gland, mated 4-day male    1293 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (1448) central nervous system, larvae L3  (1325) central nervous system, pupae P8  (645) head, virgin 1-day female  (781) head, virgin 4-day female  (1069) head, virgin 20-day female  (1122) head, mated 1-day female  (742) head, mated 4-day female  (794) head, mated 20-day female  (916) head, mated 1-day male  (814) head, mated 4-day male  (776) head, mated 20-day male  (1155) salivary gland, larvae L3 wandering  (960) salivary gland, white prepupae  (2159) digestive system, larvae L3 wandering  (1269) digestive system, 1-day adult  (1156) digestive system, 4-day adult  (851) digestive system, 20-day adult  (920) fat body, larvae L3 wandering  (882) fat body, white prepupae  (721) fat body, pupae P8  (2917) carcass, larvae L3 wandering  (1450) carcass, 1-day adult  (604) carcass, 4-day adult  (675) carcass, 20-day adult  (969) ovary, virgin 4-day female  (1121) ovary, mated 4-day female  (1062) testis, mated 4-day male  (983) accessory gland, mated 4-day male  (1293) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (1448) central nervous system, larvae L3  (1325) central nervous system, pupae P8  (645) head, virgin 1-day female  (781) head, virgin 4-day female  (1069) head, virgin 20-day female  (1122) head, mated 1-day female  (742) head, mated 4-day female  (794) head, mated 20-day female  (916) head, mated 1-day male  (814) head, mated 4-day male  (776) head, mated 20-day male  (1155) salivary gland, larvae L3 wandering  (960) salivary gland, white prepupae  (2159) digestive system, larvae L3 wandering  (1269) digestive system, 1-day adult  (1156) digestive system, 4-day adult  (851) digestive system, 20-day adult  (920) fat body, larvae L3 wandering  (882) fat body, white prepupae  (721) fat body, pupae P8  (2917) carcass, larvae L3 wandering  (1450) carcass, 1-day adult  (604) carcass, 4-day adult  (675) carcass, 20-day adult  (969) ovary, virgin 4-day female  (1121) ovary, mated 4-day female  (1062) testis, mated 4-day male  (983) accessory gland, mated 4-day male  (1293) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1448 central nervous system, larvae L3    1325 central nervous system, pupae P8    645 head, virgin 1-day female    781 head, virgin 4-day female    1069 head, virgin 20-day female    1122 head, mated 1-day female    742 head, mated 4-day female    794 head, mated 20-day female    916 head, mated 1-day male    814 head, mated 4-day male    776 head, mated 20-day male    1155 salivary gland, larvae L3 wandering    960 salivary gland, white prepupae    2159 digestive system, larvae L3 wandering    1269 digestive system, 1-day adult    1156 digestive system, 4-day adult    851 digestive system, 20-day adult    920 fat body, larvae L3 wandering    882 fat body, white prepupae    721 fat body, pupae P8    2917 carcass, larvae L3 wandering    1450 carcass, 1-day adult    604 carcass, 4-day adult    675 carcass, 20-day adult    969 ovary, virgin 4-day female    1121 ovary, mated 4-day female    1062 testis, mated 4-day male    983 accessory gland, mated 4-day male    1293 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    1448 central nervous system, larvae L3    1325 central nervous system, pupae P8    645 head, virgin 1-day female    781 head, virgin 4-day female    1069 head, virgin 20-day female    1122 head, mated 1-day female    742 head, mated 4-day female    794 head, mated 20-day female    916 head, mated 1-day male    814 head, mated 4-day male    776 head, mated 20-day male    1155 salivary gland, larvae L3 wandering    960 salivary gland, white prepupae    2159 digestive system, larvae L3 wandering    1269 digestive system, 1-day adult    1156 digestive system, 4-day adult    851 digestive system, 20-day adult    920 fat body, larvae L3 wandering    882 fat body, white prepupae    721 fat body, pupae P8    2917 carcass, larvae L3 wandering    1450 carcass, 1-day adult    604 carcass, 4-day adult    675 carcass, 20-day adult    969 ovary, virgin 4-day female    1121 ovary, mated 4-day female    1062 testis, mated 4-day male    983 accessory gland, mated 4-day male    1293 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (1448) central nervous system, larvae L3  (1325) central nervous system, pupae P8  (645) head, virgin 1-day female  (781) head, virgin 4-day female  (1069) head, virgin 20-day female  (1122) head, mated 1-day female  (742) head, mated 4-day female  (794) head, mated 20-day female  (916) head, mated 1-day male  (814) head, mated 4-day male  (776) head, mated 20-day male  (1155) salivary gland, larvae L3 wandering  (960) salivary gland, white prepupae  (2159) digestive system, larvae L3 wandering  (1269) digestive system, 1-day adult  (1156) digestive system, 4-day adult  (851) digestive system, 20-day adult  (920) fat body, larvae L3 wandering  (882) fat body, white prepupae  (721) fat body, pupae P8  (2917) carcass, larvae L3 wandering  (1450) carcass, 1-day adult  (604) carcass, 4-day adult  (675) carcass, 20-day adult  (969) ovary, virgin 4-day female  (1121) ovary, mated 4-day female  (1062) testis, mated 4-day male  (983) accessory gland, mated 4-day male  (1293) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (1448) central nervous system, larvae L3  (1325) central nervous system, pupae P8  (645) head, virgin 1-day female  (781) head, virgin 4-day female  (1069) head, virgin 20-day female  (1122) head, mated 1-day female  (742) head, mated 4-day female  (794) head, mated 20-day female  (916) head, mated 1-day male  (814) head, mated 4-day male  (776) head, mated 20-day male  (1155) salivary gland, larvae L3 wandering  (960) salivary gland, white prepupae  (2159) digestive system, larvae L3 wandering  (1269) digestive system, 1-day adult  (1156) digestive system, 4-day adult  (851) digestive system, 20-day adult  (920) fat body, larvae L3 wandering  (882) fat body, white prepupae  (721) fat body, pupae P8  (2917) carcass, larvae L3 wandering  (1450) carcass, 1-day adult  (604) carcass, 4-day adult  (675) carcass, 20-day adult  (969) ovary, virgin 4-day female  (1121) ovary, mated 4-day female  (1062) testis, mated 4-day male  (983) accessory gland, mated 4-day male  (1293) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1448 central nervous system, larvae L3    1325 central nervous system, pupae P8    645 head, virgin 1-day female    781 head, virgin 4-day female    1069 head, virgin 20-day female    1122 head, mated 1-day female    742 head, mated 4-day female    794 head, mated 20-day female    916 head, mated 1-day male    814 head, mated 4-day male    776 head, mated 20-day male    1155 salivary gland, larvae L3 wandering    960 salivary gland, white prepupae    2159 digestive system, larvae L3 wandering    1269 digestive system, 1-day adult    1156 digestive system, 4-day adult    851 digestive system, 20-day adult    920 fat body, larvae L3 wandering    882 fat body, white prepupae    721 fat body, pupae P8    2917 carcass, larvae L3 wandering    1450 carcass, 1-day adult    604 carcass, 4-day adult    675 carcass, 20-day adult    969 ovary, virgin 4-day female    1121 ovary, mated 4-day female    1062 testis, mated 4-day male    983 accessory gland, mated 4-day male    1293 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of very high expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, during early pupal stages, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    1266 embryo 02-04hr    2085 embryo 04-06hr    2212 embryo 06-08hr    2367 embryo 08-10hr    2869 embryo 10-12hr    4699 embryo 12-14hr    1974 embryo 14-16hr    2117 embryo 16-18hr    1932 embryo 18-20hr    2267 embryo 20-22hr    2828 embryo 22-24hr    2502 larva L1    2268 larva L2    2009 larva L3 12hr old    1699 larva L3 puffstage 1-2    1470 larva L3 puffstage 3-6    1401 larva L3 puffstage 7-9    1434 white prepupae new    1305 white prepupae 12hr    1406 white prepupae 24hr    1450 pupae 2d postWPP    1104 pupae 3d postWPP    872 pupae 4d postWPP    973 adult male 01day    801 adult male 05day    759 adult male 30day    775 adult female 01day    1478 adult female 05day    1348 adult female 30day    1492 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (1266) embryo 02-04hr  (2085) embryo 04-06hr  (2212) embryo 06-08hr  (2367) embryo 08-10hr  (2869) embryo 10-12hr  (4699) embryo 12-14hr  (1974) embryo 14-16hr  (2117) embryo 16-18hr  (1932) embryo 18-20hr  (2267) embryo 20-22hr  (2828) embryo 22-24hr  (2502) larva L1  (2268) larva L2  (2009) larva L3 12hr old  (1699) larva L3 puffstage 1-2  (1470) larva L3 puffstage 3-6  (1401) larva L3 puffstage 7-9  (1434) white prepupae new  (1305) white prepupae 12hr  (1406) white prepupae 24hr  (1450) pupae 2d postWPP  (1104) pupae 3d postWPP  (872) pupae 4d postWPP  (973) adult male 01day  (801) adult male 05day  (759) adult male 30day  (775) adult female 01day  (1478) adult female 05day  (1348) adult female 30day  (1492) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (1266) embryo 02-04hr  (2085) embryo 04-06hr  (2212) embryo 06-08hr  (2367) embryo 08-10hr  (2869) embryo 10-12hr  (4699) embryo 12-14hr  (1974) embryo 14-16hr  (2117) embryo 16-18hr  (1932) embryo 18-20hr  (2267) embryo 20-22hr  (2828) embryo 22-24hr  (2502) larva L1  (2268) larva L2  (2009) larva L3 12hr old  (1699) larva L3 puffstage 1-2  (1470) larva L3 puffstage 3-6  (1401) larva L3 puffstage 7-9  (1434) white prepupae new  (1305) white prepupae 12hr  (1406) white prepupae 24hr  (1450) pupae 2d postWPP  (1104) pupae 3d postWPP  (872) pupae 4d postWPP  (973) adult male 01day  (801) adult male 05day  (759) adult male 30day  (775) adult female 01day  (1478) adult female 05day  (1348) adult female 30day  (1492) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1266 embryo 02-04hr    2085 embryo 04-06hr    2212 embryo 06-08hr    2367 embryo 08-10hr    2869 embryo 10-12hr    4699 embryo 12-14hr    1974 embryo 14-16hr    2117 embryo 16-18hr    1932 embryo 18-20hr    2267 embryo 20-22hr    2828 embryo 22-24hr    2502 larva L1    2268 larva L2    2009 larva L3 12hr old    1699 larva L3 puffstage 1-2    1470 larva L3 puffstage 3-6    1401 larva L3 puffstage 7-9    1434 white prepupae new    1305 white prepupae 12hr    1406 white prepupae 24hr    1450 pupae 2d postWPP    1104 pupae 3d postWPP    872 pupae 4d postWPP    973 adult male 01day    801 adult male 05day    759 adult male 30day    775 adult female 01day    1478 adult female 05day    1348 adult female 30day    1492 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    1266 embryo 02-04hr    2085 embryo 04-06hr    2212 embryo 06-08hr    2367 embryo 08-10hr    2869 embryo 10-12hr    4699 embryo 12-14hr    1974 embryo 14-16hr    2117 embryo 16-18hr    1932 embryo 18-20hr    2267 embryo 20-22hr    2828 embryo 22-24hr    2502 larva L1    2268 larva L2    2009 larva L3 12hr old    1699 larva L3 puffstage 1-2    1470 larva L3 puffstage 3-6    1401 larva L3 puffstage 7-9    1434 white prepupae new    1305 white prepupae 12hr    1406 white prepupae 24hr    1450 pupae 2d postWPP    1104 pupae 3d postWPP    872 pupae 4d postWPP    973 adult male 01day    801 adult male 05day    759 adult male 30day    775 adult female 01day    1478 adult female 05day    1348 adult female 30day    1492 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (1266) embryo 02-04hr  (2085) embryo 04-06hr  (2212) embryo 06-08hr  (2367) embryo 08-10hr  (2869) embryo 10-12hr  (4699) embryo 12-14hr  (1974) embryo 14-16hr  (2117) embryo 16-18hr  (1932) embryo 18-20hr  (2267) embryo 20-22hr  (2828) embryo 22-24hr  (2502) larva L1  (2268) larva L2  (2009) larva L3 12hr old  (1699) larva L3 puffstage 1-2  (1470) larva L3 puffstage 3-6  (1401) larva L3 puffstage 7-9  (1434) white prepupae new  (1305) white prepupae 12hr  (1406) white prepupae 24hr  (1450) pupae 2d postWPP  (1104) pupae 3d postWPP  (872) pupae 4d postWPP  (973) adult male 01day  (801) adult male 05day  (759) adult male 30day  (775) adult female 01day  (1478) adult female 05day  (1348) adult female 30day  (1492) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (1266) embryo 02-04hr  (2085) embryo 04-06hr  (2212) embryo 06-08hr  (2367) embryo 08-10hr  (2869) embryo 10-12hr  (4699) embryo 12-14hr  (1974) embryo 14-16hr  (2117) embryo 16-18hr  (1932) embryo 18-20hr  (2267) embryo 20-22hr  (2828) embryo 22-24hr  (2502) larva L1  (2268) larva L2  (2009) larva L3 12hr old  (1699) larva L3 puffstage 1-2  (1470) larva L3 puffstage 3-6  (1401) larva L3 puffstage 7-9  (1434) white prepupae new  (1305) white prepupae 12hr  (1406) white prepupae 24hr  (1450) pupae 2d postWPP  (1104) pupae 3d postWPP  (872) pupae 4d postWPP  (973) adult male 01day  (801) adult male 05day  (759) adult male 30day  (775) adult female 01day  (1478) adult female 05day  (1348) adult female 30day  (1492) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1266 embryo 02-04hr    2085 embryo 04-06hr    2212 embryo 06-08hr    2367 embryo 08-10hr    2869 embryo 10-12hr    4699 embryo 12-14hr    1974 embryo 14-16hr    2117 embryo 16-18hr    1932 embryo 18-20hr    2267 embryo 20-22hr    2828 embryo 22-24hr    2502 larva L1    2268 larva L2    2009 larva L3 12hr old    1699 larva L3 puffstage 1-2    1470 larva L3 puffstage 3-6    1401 larva L3 puffstage 7-9    1434 white prepupae new    1305 white prepupae 12hr    1406 white prepupae 24hr    1450 pupae 2d postWPP    1104 pupae 3d postWPP    872 pupae 4d postWPP    973 adult male 01day    801 adult male 05day    759 adult male 30day    775 adult female 01day    1478 adult female 05day    1348 adult female 30day    1492 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    3480 Schneider line 2 Sg4    4194 embryonic 1182-4H    2290 embryonic GM2    1225 embryonic Kc167    3170 embryonic S1    2394 embryonic S3    1744 leg disc CME L1    4613 wing disc CME-W2    3142 wing disc ML-DmD8    5583 wing disc ML-DmD9    3585 wing disc ML-DmD16-c3    1349 wing disc ML-DmD21    9180 wing disc ML-DmD32    4528 haltere disc ML-DmD17-c3    1425 eye-antennal disc ML-DmD11    4762 antennal disc ML-DmD20-c5    4852 mixed discs ML-DmD4-c1    3954 CNS ML-DmBG1-c1    1492 CNS ML-DmBG2-c2    3719 tumorous blood cells mbn2    1615 ovary fGS/OSS    847 ovary OSC    1644 ovary OSS    652 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (3480) Schneider line 2 Sg4  (4194) embryonic 1182-4H  (2290) embryonic GM2  (1225) embryonic Kc167  (3170) embryonic S1  (2394) embryonic S3  (1744) leg disc CME L1  (4613) wing disc CME-W2  (3142) wing disc ML-DmD8  (5583) wing disc ML-DmD9  (3585) wing disc ML-DmD16-c3  (1349) wing disc ML-DmD21  (9180) wing disc ML-DmD32  (4528) haltere disc ML-DmD17-c3  (1425) eye-antennal disc ML-DmD11  (4762) antennal disc ML-DmD20-c5  (4852) mixed discs ML-DmD4-c1  (3954) CNS ML-DmBG1-c1  (1492) CNS ML-DmBG2-c2  (3719) tumorous blood cells mbn2  (1615) ovary fGS/OSS  (847) ovary OSC  (1644) ovary OSS  (652) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  (3480) Schneider line 2 Sg4  (4194) embryonic 1182-4H  (2290) embryonic GM2  (1225) embryonic Kc167  (3170) embryonic S1  (2394) embryonic S3  (1744) leg disc CME L1  (4613) wing disc CME-W2  (3142) wing disc ML-DmD8  (5583) wing disc ML-DmD9  (3585) wing disc ML-DmD16-c3  (1349) wing disc ML-DmD21  (9180) wing disc ML-DmD32  (4528) haltere disc ML-DmD17-c3  (1425) eye-antennal disc ML-DmD11  (4762) antennal disc ML-DmD20-c5  (4852) mixed discs ML-DmD4-c1  (3954) CNS ML-DmBG1-c1  (1492) CNS ML-DmBG2-c2  (3719) tumorous blood cells mbn2  (1615) ovary fGS/OSS  (847) ovary OSC  (1644) ovary OSS  (652) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    3480 Schneider line 2 Sg4    4194 embryonic 1182-4H    2290 embryonic GM2    1225 embryonic Kc167    3170 embryonic S1    2394 embryonic S3    1744 leg disc CME L1    4613 wing disc CME-W2    3142 wing disc ML-DmD8    5583 wing disc ML-DmD9    3585 wing disc ML-DmD16-c3    1349 wing disc ML-DmD21    9180 wing disc ML-DmD32    4528 haltere disc ML-DmD17-c3    1425 eye-antennal disc ML-DmD11    4762 antennal disc ML-DmD20-c5    4852 mixed discs ML-DmD4-c1    3954 CNS ML-DmBG1-c1    1492 CNS ML-DmBG2-c2    3719 tumorous blood cells mbn2    1615 ovary fGS/OSS    847 ovary OSC    1644 ovary OSS    652 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    3480 Schneider line 2 Sg4    4194 embryonic 1182-4H    2290 embryonic GM2    1225 embryonic Kc167    3170 embryonic S1    2394 embryonic S3    1744 leg disc CME L1    4613 wing disc CME-W2    3142 wing disc ML-DmD8    5583 wing disc ML-DmD9    3585 wing disc ML-DmD16-c3    1349 wing disc ML-DmD21    9180 wing disc ML-DmD32    4528 haltere disc ML-DmD17-c3    1425 eye-antennal disc ML-DmD11    4762 antennal disc ML-DmD20-c5    4852 mixed discs ML-DmD4-c1    3954 CNS ML-DmBG1-c1    1492 CNS ML-DmBG2-c2    3719 tumorous blood cells mbn2    1615 ovary fGS/OSS    847 ovary OSC    1644 ovary OSS    652 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (3480) Schneider line 2 Sg4  (4194) embryonic 1182-4H  (2290) embryonic GM2  (1225) embryonic Kc167  (3170) embryonic S1  (2394) embryonic S3  (1744) leg disc CME L1  (4613) wing disc CME-W2  (3142) wing disc ML-DmD8  (5583) wing disc ML-DmD9  (3585) wing disc ML-DmD16-c3  (1349) wing disc ML-DmD21  (9180) wing disc ML-DmD32  (4528) haltere disc ML-DmD17-c3  (1425) eye-antennal disc ML-DmD11  (4762) antennal disc ML-DmD20-c5  (4852) mixed discs ML-DmD4-c1  (3954) CNS ML-DmBG1-c1  (1492) CNS ML-DmBG2-c2  (3719) tumorous blood cells mbn2  (1615) ovary fGS/OSS  (847) ovary OSC  (1644) ovary OSS  (652) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  (3480) Schneider line 2 Sg4  (4194) embryonic 1182-4H  (2290) embryonic GM2  (1225) embryonic Kc167  (3170) embryonic S1  (2394) embryonic S3  (1744) leg disc CME L1  (4613) wing disc CME-W2  (3142) wing disc ML-DmD8  (5583) wing disc ML-DmD9  (3585) wing disc ML-DmD16-c3  (1349) wing disc ML-DmD21  (9180) wing disc ML-DmD32  (4528) haltere disc ML-DmD17-c3  (1425) eye-antennal disc ML-DmD11  (4762) antennal disc ML-DmD20-c5  (4852) mixed discs ML-DmD4-c1  (3954) CNS ML-DmBG1-c1  (1492) CNS ML-DmBG2-c2  (3719) tumorous blood cells mbn2  (1615) ovary fGS/OSS  (847) ovary OSC  (1644) ovary OSS  (652) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    3480 Schneider line 2 Sg4    4194 embryonic 1182-4H    2290 embryonic GM2    1225 embryonic Kc167    3170 embryonic S1    2394 embryonic S3    1744 leg disc CME L1    4613 wing disc CME-W2    3142 wing disc ML-DmD8    5583 wing disc ML-DmD9    3585 wing disc ML-DmD16-c3    1349 wing disc ML-DmD21    9180 wing disc ML-DmD32    4528 haltere disc ML-DmD17-c3    1425 eye-antennal disc ML-DmD11    4762 antennal disc ML-DmD20-c5    4852 mixed discs ML-DmD4-c1    3954 CNS ML-DmBG1-c1    1492 CNS ML-DmBG2-c2    3719 tumorous blood cells mbn2    1615 ovary fGS/OSS    847 ovary OSC    1644 ovary OSS    652 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    747 cold shock, 4-day adult    579 heat shock, 4-day adult    1733 Cadmium 50 mM 6 hrs, larvae L3    2637 Cadmium 50 mM 12 hrs, larvae L3    2098 Cadmium 50 mM 48 hrs, 4-day adult    1332 Cadmium 100 mM 48 hrs, 4-day adult    1143 Copper 0.5 mM 12 hrs, larvae L3    1016 Copper 15 mM 48 hrs, 4-day adult    601 Zinc 5 mM 12 hrs, larvae L3    720 Zinc 4.5 mM 48 hrs, 4-day adult    697 Ethanol 2.5% 3 hrs, larvae L3    1644 Ethanol 5% 3 hrs, larvae L3    2232 Ethanol 10% 3 hrs, larvae L3    1860 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1810 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1266 Caffeine 25 mg/ml 48 hrs, 4-day adult    612 Paraquat 5 mM 48 hrs, 4-day adult    1432 Paraquat 10 mM 48 hrs, 4-day adult    1663 Rotenone 2 μg 12 hrs, larvae L3    2201 Rotenone 8 μg 12 hrs, larvae L3    2652 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (747) cold shock, 4-day adult  (579) heat shock, 4-day adult  (1733) Cadmium 50 mM 6 hrs, larvae L3  (2637) Cadmium 50 mM 12 hrs, larvae L3  (2098) Cadmium 50 mM 48 hrs, 4-day adult  (1332) Cadmium 100 mM 48 hrs, 4-day adult  (1143) Copper 0.5 mM 12 hrs, larvae L3  (1016) Copper 15 mM 48 hrs, 4-day adult  (601) Zinc 5 mM 12 hrs, larvae L3  (720) Zinc 4.5 mM 48 hrs, 4-day adult  (697) Ethanol 2.5% 3 hrs, larvae L3  (1644) Ethanol 5% 3 hrs, larvae L3  (2232) Ethanol 10% 3 hrs, larvae L3  (1860) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (1810) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (1266) Caffeine 25 mg/ml 48 hrs, 4-day adult  (612) Paraquat 5 mM 48 hrs, 4-day adult  (1432) Paraquat 10 mM 48 hrs, 4-day adult  (1663) Rotenone 2 μg 12 hrs, larvae L3  (2201) Rotenone 8 μg 12 hrs, larvae L3  (2652) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult  (747) cold shock, 4-day adult  (579) heat shock, 4-day adult  (1733) Cadmium 50 mM 6 hrs, larvae L3  (2637) Cadmium 50 mM 12 hrs, larvae L3  (2098) Cadmium 50 mM 48 hrs, 4-day adult  (1332) Cadmium 100 mM 48 hrs, 4-day adult  (1143) Copper 0.5 mM 12 hrs, larvae L3  (1016) Copper 15 mM 48 hrs, 4-day adult  (601) Zinc 5 mM 12 hrs, larvae L3  (720) Zinc 4.5 mM 48 hrs, 4-day adult  (697) Ethanol 2.5% 3 hrs, larvae L3  (1644) Ethanol 5% 3 hrs, larvae L3  (2232) Ethanol 10% 3 hrs, larvae L3  (1860) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (1810) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (1266) Caffeine 25 mg/ml 48 hrs, 4-day adult  (612) Paraquat 5 mM 48 hrs, 4-day adult  (1432) Paraquat 10 mM 48 hrs, 4-day adult  (1663) Rotenone 2 μg 12 hrs, larvae L3  (2201) Rotenone 8 μg 12 hrs, larvae L3  (2652) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    747 cold shock, 4-day adult    579 heat shock, 4-day adult    1733 Cadmium 50 mM 6 hrs, larvae L3    2637 Cadmium 50 mM 12 hrs, larvae L3    2098 Cadmium 50 mM 48 hrs, 4-day adult    1332 Cadmium 100 mM 48 hrs, 4-day adult    1143 Copper 0.5 mM 12 hrs, larvae L3    1016 Copper 15 mM 48 hrs, 4-day adult    601 Zinc 5 mM 12 hrs, larvae L3    720 Zinc 4.5 mM 48 hrs, 4-day adult    697 Ethanol 2.5% 3 hrs, larvae L3    1644 Ethanol 5% 3 hrs, larvae L3    2232 Ethanol 10% 3 hrs, larvae L3    1860 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1810 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1266 Caffeine 25 mg/ml 48 hrs, 4-day adult    612 Paraquat 5 mM 48 hrs, 4-day adult    1432 Paraquat 10 mM 48 hrs, 4-day adult    1663 Rotenone 2 μg 12 hrs, larvae L3    2201 Rotenone 8 μg 12 hrs, larvae L3    2652 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    747 cold shock, 4-day adult    579 heat shock, 4-day adult    1733 Cadmium 50 mM 6 hrs, larvae L3    2637 Cadmium 50 mM 12 hrs, larvae L3    2098 Cadmium 50 mM 48 hrs, 4-day adult    1332 Cadmium 100 mM 48 hrs, 4-day adult    1143 Copper 0.5 mM 12 hrs, larvae L3    1016 Copper 15 mM 48 hrs, 4-day adult    601 Zinc 5 mM 12 hrs, larvae L3    720 Zinc 4.5 mM 48 hrs, 4-day adult    697 Ethanol 2.5% 3 hrs, larvae L3    1644 Ethanol 5% 3 hrs, larvae L3    2232 Ethanol 10% 3 hrs, larvae L3    1860 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1810 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1266 Caffeine 25 mg/ml 48 hrs, 4-day adult    612 Paraquat 5 mM 48 hrs, 4-day adult    1432 Paraquat 10 mM 48 hrs, 4-day adult    1663 Rotenone 2 μg 12 hrs, larvae L3    2201 Rotenone 8 μg 12 hrs, larvae L3    2652 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (747) cold shock, 4-day adult  (579) heat shock, 4-day adult  (1733) Cadmium 50 mM 6 hrs, larvae L3  (2637) Cadmium 50 mM 12 hrs, larvae L3  (2098) Cadmium 50 mM 48 hrs, 4-day adult  (1332) Cadmium 100 mM 48 hrs, 4-day adult  (1143) Copper 0.5 mM 12 hrs, larvae L3  (1016) Copper 15 mM 48 hrs, 4-day adult  (601) Zinc 5 mM 12 hrs, larvae L3  (720) Zinc 4.5 mM 48 hrs, 4-day adult  (697) Ethanol 2.5% 3 hrs, larvae L3  (1644) Ethanol 5% 3 hrs, larvae L3  (2232) Ethanol 10% 3 hrs, larvae L3  (1860) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (1810) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (1266) Caffeine 25 mg/ml 48 hrs, 4-day adult  (612) Paraquat 5 mM 48 hrs, 4-day adult  (1432) Paraquat 10 mM 48 hrs, 4-day adult  (1663) Rotenone 2 μg 12 hrs, larvae L3  (2201) Rotenone 8 μg 12 hrs, larvae L3  (2652) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult  (747) cold shock, 4-day adult  (579) heat shock, 4-day adult  (1733) Cadmium 50 mM 6 hrs, larvae L3  (2637) Cadmium 50 mM 12 hrs, larvae L3  (2098) Cadmium 50 mM 48 hrs, 4-day adult  (1332) Cadmium 100 mM 48 hrs, 4-day adult  (1143) Copper 0.5 mM 12 hrs, larvae L3  (1016) Copper 15 mM 48 hrs, 4-day adult  (601) Zinc 5 mM 12 hrs, larvae L3  (720) Zinc 4.5 mM 48 hrs, 4-day adult  (697) Ethanol 2.5% 3 hrs, larvae L3  (1644) Ethanol 5% 3 hrs, larvae L3  (2232) Ethanol 10% 3 hrs, larvae L3  (1860) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (1810) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (1266) Caffeine 25 mg/ml 48 hrs, 4-day adult  (612) Paraquat 5 mM 48 hrs, 4-day adult  (1432) Paraquat 10 mM 48 hrs, 4-day adult  (1663) Rotenone 2 μg 12 hrs, larvae L3  (2201) Rotenone 8 μg 12 hrs, larvae L3  (2652) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    747 cold shock, 4-day adult    579 heat shock, 4-day adult    1733 Cadmium 50 mM 6 hrs, larvae L3    2637 Cadmium 50 mM 12 hrs, larvae L3    2098 Cadmium 50 mM 48 hrs, 4-day adult    1332 Cadmium 100 mM 48 hrs, 4-day adult    1143 Copper 0.5 mM 12 hrs, larvae L3    1016 Copper 15 mM 48 hrs, 4-day adult    601 Zinc 5 mM 12 hrs, larvae L3    720 Zinc 4.5 mM 48 hrs, 4-day adult    697 Ethanol 2.5% 3 hrs, larvae L3    1644 Ethanol 5% 3 hrs, larvae L3    2232 Ethanol 10% 3 hrs, larvae L3    1860 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1810 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1266 Caffeine 25 mg/ml 48 hrs, 4-day adult    612 Paraquat 5 mM 48 hrs, 4-day adult    1432 Paraquat 10 mM 48 hrs, 4-day adult    1663 Rotenone 2 μg 12 hrs, larvae L3    2201 Rotenone 8 μg 12 hrs, larvae L3    2652 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_22 mE1_20_mRNA_expression_cluster_01
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0002579 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG7622-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal | larval stage RpL36B46 lethal | pupal stage, with Scer\GAL4pnr-MD237 RpL36GD8657 lethal | recessive RpL36G0471 RpL36PG29 viable | reduced RpL36B46 RpL36y74k24.1 Sterility Allele male sterile RpL36G0471 Other Phenotypes Allele developmental rate defective RpL36B46 RpL36y74k24.1 visible | dominant RpL36B46 RpL36y74k24.1 wild-type RpL36+t10 Phenotype manifest in Allele macrochaeta RpL36B46 RpL36y74k24.1
Classical Alleles ( 4 )
For All Classical Alleles Show
Allele of RpL36 Class Mutagen Stocks Known lesion RpL36y74k24.1 2 -- RpL36G0471 P-element activity 1 -- RpL36B46 hypomorphic allele - genetic evidence ethyl nitrosourea 0 Yes RpL36PG29 Delta2-3 0 --
Alleles Carried on Transgenic Constructs ( 4 )
For All Alleles Carried on Transgenic Constructs Show
Allele of RpL36 Class Mutagen Stocks Known lesion RpL36GD8657 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes RpL36KK107555 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes RpL36+t10 in vitro construct - genomic fragment 0 Yes RpL36+t4 in vitro construct - genomic fragment 0 Yes
Aneuploid Aberrations
Duplicated in	Dp(1;3)DC009 (Popodi et al., 2010-, Venken et al., 2010) Dp(1;3)DC010 (Popodi et al., 2010-, Venken et al., 2010) Dp(1;3)DC011 (Popodi et al., 2010-, Venken et al., 2010) Dp(1;Y)y267g19.1 (Lefevre, 1981) Ts(1Lt;2Lt)Bld
Not disrupted in	Df(1)scV1   Df(1)y74k10.1 (Voelker et al., 1989) Df(1)y74k24.1 (Voelker et al., 1989) Df(1)yT9-7 (Voelker et al., 1989) Df(1)yT9-21 (Voelker et al., 1989) Df(1)yT9-220 (Voelker et al., 1989) Df(1)yT9-275 (Voelker et al., 1989) Df(1)yT10-102 (Voelker et al., 1989) Df(1)yT10-106 (Voelker et al., 1989) Df(1)yT10-581 (Voelker et al., 1989) Df(1)yT10-665 (Voelker et al., 1989) Df(1)yT10-673 (Voelker et al., 1989) Df(1)yT10-677 (Voelker et al., 1989)
Disrupted in	Df(1)su(s)2 (Voelker et al., 1989) Df(1)su(s)3 (Voelker et al., 1989) Df(1)su(s)83 (Voelker et al., 1989, Duffy et al., 1996) Df(1)su(s)R194 (Duffy et al., 1996) Df(1)svr (Duffy et al., 1996) Df(1)y74k24.1 (Duffy et al., 1996) Df(1)yT8-206 (Voelker et al., 1989) Df(1)yT12-173 (Voelker et al., 1989) Df(1)yT12-187 (Voelker et al., 1989) Df(1)yT12-200 (Voelker et al., 1989) Df(1)yT12-246 (Voelker et al., 1989) Df(1)yT12-667 (Voelker et al., 1989) Df(1)yT13-423 (Voelker et al., 1989) Df(1)yT13-464 (Voelker et al., 1989) Df(1)yT14-546 (Voelker et al., 1989) Df(1)yT14-576 (Voelker et al., 1989) Df(1)yT15-5 (Voelker et al., 1989) Df(1)yT15-6 (Voelker et al., 1989) Df(1)yT15-28 (Voelker et al., 1989) Df(1)yT15-56 (Voelker et al., 1989) Df(1)yT15-105 (Voelker et al., 1989) Df(1)yT15-158b (Voelker et al., 1989) Df(1)yT15-161 (Voelker et al., 1989) Df(1)yT15-171 (Voelker et al., 1989) Df(1)yT15-177 (Voelker et al., 1989) Df(1)yT15-183 (Voelker et al., 1989) Df(1)yT15-189 (Voelker et al., 1989) Df(1)yT15-219 (Voelker et al., 1989) Df(1)yT15-222 (Voelker et al., 1989) Df(1)yT15-270 (Voelker et al., 1989) Df(1)yT15-274 (Voelker et al., 1989) Df(1)yT15-286 (Voelker et al., 1989) Df(1)yT15-300 (Voelker et al., 1989) Df(1)yT15-318 (Voelker et al., 1989) Df(1)yT15-325 (Voelker et al., 1989) Df(1)yT15-327 (Voelker et al., 1989) Df(1)yT15-334 (Voelker et al., 1989) Df(1)yT15-364 (Voelker et al., 1989) Df(1)yT15-365 (Voelker et al., 1989) Df(1)yT15-383 (Voelker et al., 1989) Df(1)yT15-390 (Voelker et al., 1989) Df(1)yT15-392 (Voelker et al., 1989) Df(1)yT15-405 (Voelker et al., 1989) Df(1)yT15-408 (Voelker et al., 1989) Df(1)yT15-410 (Voelker et al., 1989) Df(1)yT15-412 (Voelker et al., 1989) Df(1)yT15-433 (Voelker et al., 1989) Df(1)yT15-449 (Voelker et al., 1989) Df(1)yT15-460 (Voelker et al., 1989) Df(1)yT15-468 (Voelker et al., 1989) Df(1)yT15-502 (Voelker et al., 1989) Df(1)yT15-509 (Voelker et al., 1989) Df(1)yT15-511 (Voelker et al., 1989) Df(1)yT15-517 (Voelker et al., 1989) Df(1)yT15-533 (Voelker et al., 1989) Df(1)yT15-543 (Voelker et al., 1989) Df(1)yT15-548 (Voelker et al., 1989) Df(1)yT15-552 (Voelker et al., 1989) Df(1)yT15-564 (Voelker et al., 1989) Df(1)yT15-568 (Voelker et al., 1989) Df(1)yT15-575 (Voelker et al., 1989) Df(1)yT15-586 (Voelker et al., 1989) Df(1)yT15-597 (Voelker et al., 1989) Df(1)yT15-599 (Voelker et al., 1989) Df(1)yT16-14 (Voelker et al., 1989) Df(1)yT16-411 (Voelker et al., 1989) Df(1)yT16-499 (Voelker et al., 1989) Df(1)yT16-534 (Voelker et al., 1989) Df(1)yT16-554 (Voelker et al., 1989) Df(1)yT17-570 (Voelker et al., 1989) Df(1)yT17-600 (Voelker et al., 1989) Df(1)yT18-319 (Voelker et al., 1989) Df(1)yT19-16 (Voelker et al., 1989) Df(1)yT19-253 (Voelker et al., 1989) Dp(1;3)su(s)E2 (Voelker et al., 1989) Ts(1Rt;2Rt)Bld (Ferrus, 1975)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD8657} NA P{KK107555} NA characterization construct P{1BD#1} NA P{RpL36+t4} NA
Insertions
	Type of insertions Name Expression data insertion of enhancer trap P{lacW}RpL36G0471 No insertion of enhancer trap binary system P{GawB}RpL36PG29 No
Gene Ontology: Function, Process & Cellular Component ( 4 unique terms )
Terms Based on Experimental Evidence ( 2 terms )
Molecular Function
CV term Evidence References
structural constituent of ribosome inferred from direct assay (Alonso and Santaren, 2006)
Biological Process ( 0 terms)
Cellular Component
CV term Evidence References
ribosome inferred from direct assay (Alonso and Santaren, 2006)
Terms Based on Predictions or Assertions ( 4 terms )
Molecular Function
CV term Evidence References
structural constituent of ribosome inferred from sequence or structural similarity with UniProtKB:P39032 (FlyBase, 1992-) non-traceable author statement (Swiss-Prot Project Members, 1996.2.1)
Biological Process
CV term Evidence References
translation inferred from sequence or structural similarity with UniProtKB:P39032 (FlyBase, 1992-)
Cellular Component
CV term Evidence References
cytosolic large ribosomal subunit inferred from sequence or structural similarity with UniProtKB:P39032 (FlyBase, 1992-) ribosome non-traceable author statement (Swiss-Prot Project Members, 1996.2.1)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions RpL36 allele Gene References RpL36B46 run (Duffy et al., 1996) RpL36y74k24.1 run (Duffy et al., 1996) unspecified eve (Duffy et al., 1996) kni (Duffy et al., 1996) Kr (Duffy et al., 1996)
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 57577 DroID - A comprehensive database of gene and protein interactions. • FBgn0002579 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 31009
Orthologs
OrthoDB Orthologs (58) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6KWKDH Dipteran inclusive ortholog search EOG6XH08N Insect inclusive ortholog search EOG69W1C9 Arthropod inclusive ortholog search EOG6T76M6 Metazoa inclusive ortholog search EOG6WDS7F
Orthologs in Drosophila Species (EOG6KWKDH)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\RpL36     Drosophila simulans   Dsim\GD16468 Y   Drosophila sechellia   Dsec\GM19031 Y   Drosophila erecta   Dere\GG12751 Y   Drosophila yakuba   Dyak\RpL36 Y   Drosophila ananassae   Dana\GF21342 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA20486 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA23124     Drosophila persimilis   Dper\GL14685 Y   Drosophila willistoni   Dwil\GK25446 Y   Drosophila willistoni   Dwil\GK12645     Drosophila virilis   Dvir\GJ14783 Y   Drosophila mojavensis   Dmoj\GI11079 Y   Drosophila grimshawi   Dgri\GH24619 Y
Orthologs in non-Drosophila Dipterans (EOG6XH08N)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL000010   Aedes aegypti Yellow fever mosquito  Aaeg\AAEL002639   Anopheles gambiae Malaria mosquito  Agam\AGAP002921
Orthologs in non-Dipteran Insects (EOG69W1C9)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB52116   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG008272   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH12658   Atta cephalotes Leafcutter ant  Acep\ACEP18573   Camponotus floridanus Florida carpenter ant  Cflo\CFLO14009   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL14786   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL13460   Linepithema humile Argentine ant  Lhum\LH18751   Pogonomyrmex barbatus Red harvester ant  Pbar\PB19253   Solenopsis invicta Red fire ant  Sinv\SINV19013   Acyrthosiphon pisum Pea aphid  Apim\ACYPI007971   Bombyx mori Silkmoth  Bmor\RpL36   Pediculus humanus Human body louse  Phum\PHUM539290   Tribolium castaneum Red flour beetle  Tcas\TC002985
Orthologs in non-Insect Arthropods (EOG6T76M6)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_230277   Ixodes scapularis Deer tick  Isca\ISCW011316
Orthologs in non-Arthropod Metazoa (EOG6WDS7F)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\rpl-36   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_028247gn   Danio rerio Zebrafish  Drer\rpl36   Xenopus tropicalis Western clawed frog  Xtro\rpl36   Gallus gallus Domestic chicken  Ggal\RPL36   Mus musculus House mouse  Mmus\Rpl36-ps3   Mus musculus House mouse  Mmus\Gm5745   Mus musculus House mouse  Mmus\Gm8973   Mus musculus House mouse  Mmus\Rpl36   Mus musculus House mouse  Mmus\Gm5614   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000031130   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000033473   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000034002   Rattus norvegicus Norway rat  Rnor\RGD1563135   Rattus norvegicus Norway rat  Rnor\RGD1564730   Rattus norvegicus Norway rat  Rnor\RGD1564268   Rattus norvegicus Norway rat  Rnor\LOC100361060   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000030768   Rattus norvegicus Norway rat  Rnor\LOC100361644   Rattus norvegicus Norway rat  Rnor\RGD1564690   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000032317   Rattus norvegicus Norway rat  Rnor\LOC100360439   Rattus norvegicus Norway rat  Rnor\LOC681576   Rattus norvegicus Norway rat  Rnor\RGD1562776   Homo sapiens Human  Hsap\RPL36
Human Orthologs (1)
Gene OMIM HGNC Hsap\RPL36
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD16468 Drosophila sechellia Dsec\GM19031 Drosophila erecta Dere\GG12751 Drosophila yakuba Dyak\RpL36 Drosophila ananassae Dana\GF21342 Drosophila pseudoobscura pseudoobscura Dpse\GA20486 Drosophila persimilis Dper\GL14685 Drosophila willistoni Dwil\GK25446 Drosophila virilis Dvir\GJ14783 Drosophila mojavensis Dmoj\GI11079 Drosophila grimshawi Dgri\GH24619
Stocks & Reagents
Stocks Listed in FlyBase ( 5 )
Bloomington	12266 P{lacW}RpL36G0471 w67c23/FM7a 3922 C(1)DX, y1 w1 f1/Df(1)y74k24.1, RpL36y74k24.1/Dp(1;Y)y261l
Kyoto	107269 C(1)DX, y1 w1 f1/Df(1)y74k24.1, RpL36y74k24.1/Dp(1;Y)y2*
VDRC	v104330 P{KK107555}VIE-260B v39914 w1118 P{GD8657}v39914
Genomic Clones ( 1 )
	BACR16G06 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 558 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	AT29875 GH03995
Other clones	yak-em_RpL36
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT12526 GH02637 GH02931 GH06685 GH09988 GH14117 GH14129 GH19239 GH23327 GH23726 GH26931 GM03225 GM03347 GM06795 GM16749 GM17342 GM17351 GM17515 GM17886 GM18208 GM20861 GM20926 GM21192 GM23058 GM23065 GM23567 GM24620 GM25587 GM26118 GM28252 GM30353 GM30590 GM31842 LD05518 LD34617 LD46271 LP01807 LP03148 LP03482 LP04852 LP07618 LP07788 LP11611 LP12131 LP14678 LP18151 RE20149 RH03018 RH03545 RH03951 RH04001 RH04673 RH04933 RH04977 RH05287 RH07605 RH10822 RH11062 RH11208 RH11323 RH12460 RH13718 RH13759 RH16323 RH16807 RH30656 RH37324 RH37395 RH38972 RH41426 RH41884 RH42325 RH42851 RH42885 RH43131 RH44535 RH45030 RH45255 RH45258 RH45358 RH47182 RH48946 RH49337 RH49892 RH50263 RH51365 RH51578 RH53886 RH54162 RH54265 RH54488 RH54494 RH54939 RH55036 RH55240 RH56064 RH56186 RH56855 RH58077 RH58431 RH58534 RH58603 RH59250 RH59267 RH59503 RH60289 RH61111 RH64461 RH65532 RH65581 RH65984 RH66574 RH66760 RH67081 RH67811 RH68354 RH68516 RH68709 RH68941 RH69075 RH69717 RH70377 RH70716 RH73006 RH74228 RH74735 SD12393 SD13792 SD13945 SD16709 SD16836 UT01103
Other clones	54942 60819 158213 161495 163483 286628 291753 292496 295860 300210 522161 524515 525006 525077 525516 525611 533431 533559 534047 542587 542869 557021 557865 558010 561995 569822 569954 bs50h10 CK01.1D.B6 CK01.7B.B8 CK01.100A.E8 Dmel_dig_005179_0703_2227 Dmel_dig_005492_0695_1670 Dmel_dig_010523_0587_3689 Dmel_dig_010822_0628_0575 Dmel_dig_011760_0617_0536 Dmel_dig_012718_0645_0628 Dmel_dig_017451_0634_1898 Dmel_dig_019153_0624_1967 Dmel_dig_019650_0651_2500 Dmel_dig_019665_0603_0720 Dmel_neb_001864_0125_3726 Dmel_neb_005487_0104_3570 Dmel_neb_006298_0599_0840 Dmel_neb_006679_0355_3166 Dmel_neb_007368_0371_3359 Dmel_neb_008053_0407_3152 Dmel_neb_008914_0395_0489 Dmel_neb_009404_0452_0390 Dmel_neb_009910_0190_0871 Dmel_neb_009971_0926_0344 Dmel_neb_010788_0643_3330 Dmel_neb_010993_0659_3340 Dmel_neb_011244_0352_2450 Dmel_neb_011600_0192_2204 Dmel_neb_011682_0078_1449 Dmel_neb_011705_0383_1642 Dmel_neb_011859_0149_2252 Dmel_neb_011881_0439_0919 Dmel_neb_012394_0845_1693 Dmel_neb_012422_0629_0325 Dmel_neb_012591_0390_0914 Dmel_neb_012767_0193_1784 Dmel_neb_012905_0121_0573 Dmel_neb_013142_0363_0639 Dmel_neb_013255_0441_1488 Dmel_neb_013730_0430_2985 Dmel_neb_013914_0934_2647 Dmel_neb_014046_0125_0445 Dmel_neb_014359_0676_1427 Dmel_neb_015154_0390_3415 Dmel_neb_015256_0438_0879 Dmel_neb_015325_0415_0712 Dmel_neb_015441_0656_1133 Dmel_neb_015848_0873_3308 Dmel_neb_016499_0892_1927 EC00150 EC00250 EC12649 EC14244 EC14702 EC22052 EC23618 EC23662 EC24103 EC26019 EC27387 EC28616 EC29918 EC29962 EC30741 EC37655 EC38025 EC39458 EC40240 EC252660 EC256825 EK010440 EK084737 EK161408 EK181759 EK185659 EK260822 EK265221 EK267622 EN01459 EN05531 EN05728 EN06454 EN06631 EN06724 EN06814 EN09515 EN09742 EN10919 EN11522 EN11854 EN12543 EN13041 EN13522 EN15305 EN15661 EN15949 EN17057 EN17060 EP03760 FGA005C12 FGA011B05 FGC010E05 FGC014H06 FGC019A05 FGC023E01 FGC025A06 FGC030C02 FGC032D02 FGH102B03 FGH109B10 FGH111D04 FGH116G08 FGH120F02 FGH123D05 FGM002E01 FGM004D03 FGM105C05 FGM208G01 FGM210D08 FGM211H07 FGM212H06 FGM217A07 FGM223D04 FGM223F01 FGM225A03 FGM228F09 FGM231F10 FGM233A05 FGM236H06 GH11771 GH13121 GH13926 GH14280 GH15226 GH22587 GH23085 GH25055 GH25731 IP05287 IP05387 IP05487 IP07748 IP13564 IP15263 IP15363 IP15463 IP15563 LD21189 LD21443 LP04505 LP18954 RC0-DP0007-150700-011-D08 RE04605 RE05680 RE06401 RE08964 RE09620 RE12424 RE18864 RE25858 RE35430 RE40327 RE41066 RE41532 RE41817 RE46383 RE51959 RE51967 RE52023 RE53467 RE57972 RE58723 RE58777 RE59110 RE59521 RE61510 RE61910 RE62073 RE63720 RE64925 RE65872 RE67181 RE68818 RE69556 RE71132 RE74447 RH01505 RH01524 RH01960 RH02143 RH02314 RH02329 RH02338 RH02423 RH02595 RH02632 RH02646 RH02735 RH02767 RH02822 RH03259 RH05329 RH07023 RH07048 RH07141 RH07185 RH07718 RH07891 RH11267 RH11770 RH16201 RH17668 RH18470 RH18917 RH18920 RH19705 RH19844 RH20320 RH20473 RH22092 RH23570 RH23834 RH24484 RH25246 RH25254 RH26918 RH27764 RH28010 RH28193 RH30267 RH31108 RH31286 RH32559 RH32669 RH32834 RH33180 RH33186 RH33847 RH33967 RH34547 RH35356 RH36173 RH36255 RH39361 RH39416 RH39563 RH39720 RH40667 RH42168 RH43569 RH45238 RH48808 RH50588 RH52228 RH52286 RH52564 RH54492 RH58741 RH61758 RH61769 RH61882 RH62892 RH63117 RH63340 RH64661 RH66543 RH67596 RH68420 RH71714 RH72921 RH73133 RH74708 RP003003728 RP003018045 RP003023374 RP003025977 RP003028170 RP003028755 RP003028808 RP003029667 RP003030268 RP003038389 RP003048180 RP003057483 RP003064266 RP003066545 RP003073427 RP003074863 RP003083789 RP003084206 RP003088612 RP003092427 RP003093705 RP003094642 RP003096930 RP003099508 RP003100422 RP003102103 RP003107718 RP003109283 RP003110011 RP003120840 RP003123852 RP003126671 RP003128301 RP003147663 RP003151438 RP003157124 RP003158127 RP003184085 RP003188076 RP003197418 RP003204569 RP003206742 RP003212798 RP003214516 RP003214795 RP003228077 RP003233812 RP003247070 RP003248916 RP003257579 RP003258934 RP003262635 RP003272800 RP003275480 RP003276210 RP003283755 RP003286954 RP003288509 RP003303866 RP003306055 RP003309113 RP003311671 RP003354155 RP003361863 RP003369448 RP003370282 RP003370480 RP003371846 RP003373077 RP003375139 RP003375817 RP003377211 RP003398553 RP003399971 RP003400429 RP003400800 RP003402908 RP003405002 RP003406798 RP003409896 RP003411549 RP003414790 RP003422627 RP003425598 RP003427296 RP003430166 RP003433449 RP003435484 RP003436328 RP003438237 RP003438495 RP003453177 RP003456434 RP003457309 RP003458207 RP003471017 RP003473988 RP003477804 RP003478252 RP003482405 RP003488478 RP003489057 RP003502022 RP003522205 RP003525004 RP003539570 RP003540289 RP003549591 RP003554341 RP003562240 RP003577016 RP003579883 RP003580528 RP003582660 RP003585227 RP003588342 RP003590605 RP003611434 RP003620351 RP003627039 RP003635812 RP003651084 RP003652813 RP003665813
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0002579 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 31009
Antibody Information
Other Information
Discoverer
	Patterson.
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: RpL36 CG7622 (Nusskern, 1999.11)
Source for database merge of	Source for merge of: RpL36 BcDNA:AT29875 (FlyBase, 1996-) Source for merge of: RpL36 l(1)G0471 (Peter et al., 2002)
Additional comments	Source for merge of RpL36 BcDNA:AT29875 was a shared cDNA (date:030728). (FlyBase, 1996-)
Other Comments
	Haploinsufficient locus. (Cook et al., 2012) Minute gene. (Marygold et al., 2007) Deletions removing RpL36 but no other cytoplasmic ribosomal protein-encoding genes show Minute phenotypes. (Marygold et al., 2007) RNAi generated by PCR using primers directed to this gene causes a cell growth and viability phenotype when assayed in Kc167 and S2R+ cells. (Boutros et al., 2004) "Gene order: In direction of increasing cytology: RpL36+ l(1)1Bi+ Dredd- su(s)+" was stated as revision. (Chen et al., 1998) "Gene order: In direction of increasing cytology: RpL36? l(1)1Bi+ Dredd- su(s)+ CG13367? l(1)1Bk?" was stated as revision. (Rodriguez, 1997.9.8) RpL36 affects posterior pattern formation and acts, perhaps indirectly, as a dosage sensitive maternal modifier of run. (Duffy et al., 1996) FlyBase curator comment: Gene order described in this paper is "l(1)1Bi? RpL36+ Dredd- su(s)+ CG13367? l(1)1Bk?". FBrf0098592 subsequently reversed the order of l(1)1Bi and RpL36. (Voelker et al., 1989) Mutant alleles have the developmental delay and bristle phenotype that makes them useful as markers in clonal analysis. (Lawrence et al., 1986) One of a class of genes (see MIN record) that when present in one, rather than two, copies, produce a characteristic phenotype consisting of short slender bristles and delayed development. Heterozygous deficiency for locus is extreme Minute of low viability. In Patterson's work, the nonappearance of Minutes led him to postulate a factor for viability (Vi). Eclosion delayed 76 hr (Ferrus, 1975).
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_057281 NM_166853 NM_166854 NM_166855 RefSeq (Proteins) • NP_476629 NP_726686 NP_726687 NP_726688 DDBJ / EMBL / GenBank • AA816274 AAA63151 AAF45531 AAL48453 AAN09019 AAN09020 AAN09021 AF083547 AJ299997 AL031581 AY070831 BG633903 CAA20892 U20543 Entrez Gene - A searchable database of RefSeq genes. • 31009 UniProtKB/Swiss-Prot • P49630
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Ribosomal protein L36e (IPR000509)
Linkouts
	BioGRID - A database of protein and genetic interactions • 57577 DroID - A comprehensive database of gene and protein interactions. • FBgn0002579 DRSC - Results from RNAi screens. • FBgn0002579 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0002579 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG7622-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0002579 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 31009 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 31009 modMine - Data generated by the modENCODE project. • FBgn0002579
Synonyms & Secondary IDs ( 16 )
Reported As
Symbol Synonym	anon-EST:Posey274   BcDNA:AT29875   CG7622 (Bourbon et al., 2002, Benos, 2000.12.13, Keleman et al., 2009.8.5, Marygold et al., 2007, Cammarato et al., 2011) EG:115C2.7 (Benos et al., 2001, Benos, 2000.12.13, ) L36a (Brogna et al., 2002) l(1)1Bj   l(1)G0471 (Schaefer et al., 1999.12.2, ) M(1)1B (Steinhauer, 1995.2.1, Rodriguez, 1997.9.8, Merriam et al., 1991, Voelker et al., 1989, Marygold et al., 2007) M(1)Bld (Lawrence et al., 1986, Lefevre, 1981, Ferrus, 1975, Tyler et al., 2007) RpL36 (Beller et al., 2006, Tyler et al., 2007, Robida et al., 2007, Nie et al., 2009, Marygold et al., 2007, Popodi et al., 2010-, Qin et al., 2007, Venken et al., 2010, Cook et al., 2012) Rp L36 (Alonso and Santaren, 2006) Vi
Name Synonym	Minute(1)1B   Minute(1)Blond   Ribosomal protein L36 (Cho et al., 2005, Cammarato et al., 2011) Viability
Secondary FlyBase IDs
	FBgn0025295 FBgn0040151 FBgn0047325
References ( 51 )
Generate a list of	All references relating to this gene ( 51 )
List References by type	Research paper  ( 27 ) Supplementary material  ( 8 ) Personal communication to FlyBase  ( 8 ) FlyBase analysis  ( 2 ) DNA/RNA sequence record  ( 1 ) Curated genome annotation  ( 2 ) Protein sequence record  ( 1 ) Book  ( 1 ) Thesis  ( 1 )
Recent research papers ( 3 )
	Cook et al., 2012, Genome Biol. 13(3): R21 The generation of chromosomal deletions to provide extensive coverage and subdivision of the Drosophila melanogaster genome. [FBrf0219066] Booker et al., 2011, BMC Genomics 12: 50 False negative rates in Drosophila cell-based RNAi screens: a case study. [FBrf0212969] Casad et al., 2011, Genetics 189(3): 861--870 Cardiomyopathy Is Associated with Ribosomal Protein Gene Haplo-Insufficiency in Drosophila melanogaster. [FBrf0216591] Show all research papers ...