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Gene Dmel\RpS3

General Information
Symbol	Dmel\RpS3	Species	D. melanogaster
Name	Ribosomal protein S3	Annotation symbol	CG6779
Feature type	protein_coding_gene	FlyBase ID	FBgn0002622
Gene Model Status	Current	Stock availability	13 publicly available
Also Known As	M(3)95A, M(3)w, S3, dS3, M(3R)w
Genomic Location
Chromosome (arm)	3R	Recombination map	3-79.7
Cytogenetic map	94E13-94E13	Sequence location	3R:19,184,534..19,185,700 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Ribosomal protein S3 is referred to in FlyBase by the symbol Dmel\RpS3 (CG6779, FBgn0002622). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: oxidized purine nucleobase lesion DNA N-glycosylase activity; structural constituent of ribosome; DNA-(apurinic or apyrimidinic site) lyase activity. There is experimental evidence that it is involved in the biological process: negative regulation of neuron apoptotic process; response to DNA damage stimulus; DNA repair; mitosis. 14 alleles are reported. The phenotypes of these alleles are annotated with: organ system; multicellular structure; adult; anatomical structure; organ system subdivision; imaginal precursor; thoracic segment; sense organ; external compound sense organ; adult segment. It has one annotated transcript and one annotated polypeptide. Protein features are: K Homology domain; K Homology domain, type 2; K homology domain, prokaryotic type; K homology domain-like, alpha/beta; Ribosomal protein S3, C-terminal; Ribosomal protein S3, conserved site; Ribosomal protein S3, eukaryotic/archaeal. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of very high expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, during early pupal stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: High levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1632269_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of RpS3. Gene sequence location is 3R:19184534..19185700.
User Contributed Data
	Beta version, feedback welcome
Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
Gene/Allele symbols may differ from current usage	M(3)95A Strong Minute; eclosion delayed 40 hours (Ferrus, 1975, Genetics 79: 589-99).
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 94E13-94E13   Limits computationally determined from genome sequence between P{PZ}cnc03921 and P{PZ}l(3)0690606906
Experimentally Determined Cytological Location
Cytogenetic map Notes References 94F-95A   (determined by in situ hybridisation)   (Wilson et al., 1994) 94F-95A   (determined by in situ hybridisation)   (Andersson et al., 1994) 95A-95A   (determined by in situ hybridisation)   (Wilson et al., 1993)
Experimentally Determined Recombination Data
Location	3-73 (Andersson et al., 1994) 3-79.7   3-79.8 (Schultz, 1929) 3- (Lambertsson, 1993.3.29)
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\RpS3 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.46
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) RpS3-RA FBtr0084410  NM_057284   904   246
Additional Transcript Data & Comments
Reported size (kB)	0.856 (longest cDNA) (Wilson et al., 1993) 0.94, 0.9 (northern blot) (Andersson et al., 1994)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein RpS3-PA   FBpp0083802   27.5   246   9.90     NP_476632   AAF56129
Additional Polypeptide Data & Comments
Reported size (kDa)	246 (aa); 27 (kD) (Wilson et al., 1993) 246 (aa); 27.5 (kD predicted) (Andersson et al., 1994)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Ribosomal protein S3, conserved site (IPR018280) Ribosomal protein S3, C-terminal (IPR001351) K Homology domain, type 2 (IPR004044) Ribosomal protein S3, eukaryotic/archaeal (IPR005703) K homology domain, prokaryotic type (IPR009019) K Homology domain (IPR004087) K homology domain-like, alpha/beta (IPR015946)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA264799   AA264874   AA264935   AA390625   AA390929   AA391169   AA391278   AA393004   AA439074   AA439999   AA440845   AA441207   AA539612   AA567057   AA694867   AA694973   AA695347   AA695581   AA695621   AA695792   AA696454   AA696495   AA696616   AA696746   AA698514   AA735287   AA735661   AA735755   AA801935   AA802281   AA802323   AA803104   AA803241   AA804048   AA804075   AA817032   AA817150   AA820250   AA821014   AA941002   AA941812   AA942086   AA949639   AA949658   AA950802   AA951009   AA951123   AA951256   AA951280   AA951939   AE014297 AAF56129   AC010670   AI061990   AI062469   AI063311   AI063535   AI063766   AI064154   AI106764   AI106894   AI107157   AI107390   AI107498   AI109923   AI134834   AI135421   AI135704   AI239023   AI256883   AI257611   AI257641   AI258159   AI258856   AI258989   AI259983   AI260853   AI261083   AI292614   AI293377   AI293773   AI295641   AI295684   AI296003   AI296772   AI387652   AI387788   AI388042   AI388395   AI388720   AI388912   AI389326   AI402624   AI403515   AI403856   AI404176   AI404855   AI405593   AI512545   AI513163   AI513331   AI514111   AI514313   AI515599   AI515646   AI519405   AI519407   AI531032   AI531657   AI532319   AI532666   AI532823   AI532905   AI533295   AI533296   AI533587   AI534125   AI534406   AI534951   AI535012   AI542013   AI542149   AI543356   AY118971 AAM50831   AY231642   AY231995   AY440819   BF505917   BG632983   BG634914   BG635467   BG635500   BG635749   BG635756   BG635835   BG635892   BG635907   BG636002   BG636284   BG636355   BG636401   BG636471   BG636923   BG636932   BG636990   BG637268   BG637281   BG637498   BG640120   BG640159   BG640325   BG641355   BI141754   BI141861   BI142025   BI142086   BI161485   BI161486   BI161789   BI161790   BI162481   BI162482   BI163353   BI164246   BI164696   BI165019   BI165788   BI166030   BI166965   BI167149   BI167680   BI168118   BI168754   BI169563   BI169741   BI169974   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BX070506   BX070555   BX070615   BX070633   BX070755   BX070869   BX071112   BX071304   BX071404   BX071485   BX071616   BX071696   BX071741   BX071776   BX071837   BX071950   BX072062   CA804810   CK135659   CK135817   CK604828   CK604829   CK605240   CK605241   CK605357   CK605358   CK658399   CK658604   CK659115   CK659558   CK659840   CK660485   CK660793   CK661498   CK662459   CK662468   CO152665   CO153406   CO153500   CO153761   CO154289   CO154937   CO154968   CO155211   CO155357   CO155496   CO155903   CO156083   CO156861   CO156970   CO157085   CO177547   CO182564   CO182995   CO185409   CO191476   CO191914   CO193315   CO193458   CO195016   CO195964   CO270936   CO273612   CO285433   CO294781   CO304191   CO320806   CO323623   CO329336   CO335395   CO335555   CO336132   CO336533   CO336571   CO336624   CO337127   CO337320   CO337549   CO337684   CO338749   CR938011   CR938327   CR938573   EC059500   EC063729   EC065155   EC065331   EC066372   EC073917   EC074597   EC194466   EC199543   EC204821   EC207178   EC217417   EC218711   EC230068   EC233078   EC235101   EC249835   EC261038   EC261070   EC261181   EC261464   EC261797   EC262189   EC262930   EC263272   EC263365   EC263697   EC264157   EC264321   EC264627   EC264926   EC264940   EC265157   EC265470   EC266045   EC266247   EC266263   EC266524   EC266621   EC267009   EC267691   EL872442   EL876103   EL876374   EL876375   EL886587   EV574806   EV575905   EV576049   EV576744   EV578263   EV578739   EV579629   EV580088   EV581592   EV581746   EV582519   EV583237   EV583500   EV583696   EV585012   EV587608   EV590301   EV591091   EV592613   EV594424   EV594980   EV596367   EV597659   EV598356   EV599078   EV599728   EV600079   EV600337   GH748238   GH748947   GH749766   GH750185   GH750550   GH750749   GH752608   GH753122   GH753407   GH753520   GH753974   GH754067   GH754280   GH754416   GH754764   GH754993   GH755048   GH755575   GH755771   GH756180   GH756281   GH757166   GH757207   GH757435   GH757642   GH757645   GH758039   GH758617   GH758978   GH759218   GH759307   GH759784   GH760051   GH760906   GH761127   GH761256   GH771016   GH772272   GH773127   GH773136   GH773389   GH773782   GH773785   GH773823   GH775400   GH775562   GH775707   GH775835   GH776186   GH776580   GH776590   GH776794   GH777238   GH777316   GH777752   GH778619   GH778736   GH779021   GH780018   GH780380   GH780396   GH780477   GH781322   GH781488   GH781630   GH781660   GH781920   GH782082   GH782384   GH782415   GH782771   GH783831   GH783861   GH784650   GH785206   GH785525   GH786135   GH786159   GH786221   GH786418   GH786528   GH786761   GH787302   GH787949   GH788861   GH789094   GH789861   GH790579   GH790720   GH790786   GH791515   GH791570   GH791974   GH792022   GH793664   GH793721   GH793848   GH794216   GH794519   GH794607   GH794676   GH795907   GH796086   GH796144   GH796294   GH796395   GH796444   GH797077   GH797700   GH798013   GH798280   GH798328   GH799146   GH799842   GH800648   GH800772   GH801387   GH801776   GH802051   GH802437   GH802799   GH802878   GH803137   GH803356   GH804182   GH804539   GH804562   GH805092   GH805167   GH805500   GH805630   GH805860   GH805933   GH805961   GH806330   GH806932   GH806981   GH807375   GH807934   GH808138   GH808524   GH808568   GH808917   GH809218   GH809581   GH809790   GH810757   GH810932   GH811251   GH811280   GH811476   GH812215   GH812510   GH813213   GH813385   GH813411   GH813439   GH814886   GH815235   GH815701   GH816395   GH816464   GH817581   GH817812   GH818325   GH818527   GH818753   GH819056   GH819513   GH820052   GH820151   GH820191   GH820293   GH820429   GH820779   GH820899   GH821722   GH822501   GH822617   GH822849   GH822940   GH822977   GH823741   GH824032   GH824583   GH824593   GH824734   GH825548   GH826003   GH826562   GH826563   GH826898   GH826955   GH827039   GH827142   GH827711   GH827972   GH828590   GH828859   GH829291   GH829334   GH829548   GH830384   GH830567   GH831919   GH832409   GH832800   GH833028   GH834257   GH834586   GH834928   GH835303   GH835530   GH835900   GH835935   GH835985   GH836019   GH836798   GH837065   GH837071   GH837085   GH837372   GH837430   GH838417   GH839030   GH839094   GH839400   GH839831   GH840927   GH841466   GH841746   GH842005   GH842757   GH842990   GH843008   GH843124   GH843548   GH843869   GH844119   GH844250   GH844539   GH844546   GH844729   GH844885   GH845580   GH845948   GH845955   GH845992   GH846141   GH846321   GH846719   GH847072   GH847275   GH847472   GH847536   GH847762   GH848524   GH848574   GH848591   GH849293   GH849430   GH850073   GH850486   GH850611   GH850684   GH851141   GH851155   GH851330   GH851830   GH852186   GH852893   GH852919   GH852980   GH853648   GH853740   GH853845   GH855100   GH855393   GH855830   GH856944   GH858938   GH859013   GH859395   GH859435   GH859520   GH860338   GH860881   GH861691   GH861901   GH862116   GH862365   GH863368   GH863402   GH863453   GH863701   GH863817   GH863875   GH864072   GH864104   GH864378   GH864928   GH865202   GH865430   GH865711   GH865860   GH866429   GH867710   GH868213   GH868666   GH869083   GH869323   GH870229   GH870283   GH870445   GH870872   GH871059   GH872058   GH872498   GH872890   GH873395   GH873590   GH874913   GH875138   GH875181   GH875461   GH875908   GH876396   GH876587   GH878492   GH878622   GH879099   GH879117   GH879510   GH879654   GH879676   GH879897   GH880415   GH880690   GH880984   GH881747   GH882064   GH882078   GH882454   GH882527   GH882728   GH882795   GH883066   GH883377   GH884006   GH884107   GH885643   GH885884   GH887681   GH887800   GH888233   GH888732   GH888817   GH889122   GH889347   GH889473   GH889633   GH889713   GH889899   GH890442   GH890772   GH890827   GH890870   GH891035   GH891054   GH891682   GH891693   GH891815   GH892036   GH892108   GH892956   GH893114   GH893506   GH893525   GH893526   GH893833   GH894999   GH895432   GH895490   GH895870   GH895924   GH896114   GH896230   GH896640   GH896840   GH897241   GH897489   GH898203   GH899540   GH899560   GH899669   GH899841   GH900668   GH902284   GH902544   GH902815   GH903167   GH903707   GH904182   GH904546   GH904800   GH904853   GH905314   GH905555   GH905762   GH905914   GH906526   GH906781   GH906785   GH907602   GH907766   GH907943   GH908414   GH908459   GH908704   GH909021   GH909144   GH911180   GH911376   GH911523   GH911601   GH911709   GH911972   GH912035   GH912177   GH912888   GH912977   GH913719   GH914432   GH914858   GH915317   GH915334   GH916045   GH916366   GH916436   GH916443   GH916828   GH916939   GH917456   GH917714   GH917854   GH918367   GH918612   GH919008   GH919183   GH919194   GH919564   GH919594   GH919960   GH920442   GH920817   GH922585   GH922622   GH922627   GH922799   GH922962   GH923282   GH923283   GH923743   GH923905   GH923975   GH924196   GH924252   GH924349   GH924753   GH925836   GH925886   GH927280   GH928995   GH929357   GH929863   GH930535   GH931179   GH932072   GH932318   GH932949   GH933832   GH934206   GH934327   GH934541   GH934761   GH934903   GH934945   GH935086   GH935103   GH935236   GH935389   GH935491   GH935685   GH935760   GH935799   GH936013   GH936775   GH936877   GH937225   GH937304   GH937773   GH938315   GH938389   GH939246   GH942371   L13690 AAA28875   X72921 CAA51425
UniProtKB/Swiss-Prot	Q06559
UniProtKB/TrEMBL
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 4 -- 6   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 7 -- 8   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 9 -- 10   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 11 -- 12   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 13 -- 16   organism | ubiquitous   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 7 of adulthood -- day 49 of adulthood   adult heart   (Cammarato et al., 2011)
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
microtubule associated complex inferred from direct assay (Hughes et al., 2008) nuclear matrix inferred from direct assay (Wilson et al., 1994) nucleus inferred from direct assay (Wilson et al., 1994) ribosome inferred from direct assay (Alonso and Santaren, 2006)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    2603.3 Larval Midgut    4373.2 Larval Hindgut    4203.9 Larval Malpighian Tubules    4934.5 Larval Fat Body    7686.2 Larval Salivary Gland    7284.3 Larval Trachea    5937.675 Larval Carcass    4340.5 Adult Head    4531.1 Adult Eye    6342.575 Adult Brain    2960.1 Adult Thoracic-Abdominal Ganglion    4108.6 Adult Crop    6041.4 Adult Midgut    5101.6 Adult Hindgut    5112 Adult Malpighian Tubules    5126.4 Adult Fat Body    5215 Adult Salivary Gland    10420.8 Adult Heart    6552.9 Adult VirginFemale Spermatheca    5559.3 Adult InseminatedFemale Spermatheca    5621.9 Adult Ovary    3341.7 Adult Testis    1222.7 Adult Male Accessory Gland    9099.8 Adult Carcass    5721.3 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (2603.3) Larval Midgut  (4373.2) Larval Hindgut  (4203.9) Larval Malpighian Tubules  (4934.5) Larval Fat Body  (7686.2) Larval Salivary Gland  (7284.3) Larval Trachea  (5937.675) Larval Carcass  (4340.5) Adult Head  (4531.1) Adult Eye  (6342.575) Adult Brain  (2960.1) Adult Thoracic-Abdominal Ganglion  (4108.6) Adult Crop  (6041.4) Adult Midgut  (5101.6) Adult Hindgut  (5112) Adult Malpighian Tubules  (5126.4) Adult Fat Body  (5215) Adult Salivary Gland  (10420.8) Adult Heart  (6552.9) Adult VirginFemale Spermatheca  (5559.3) Adult InseminatedFemale Spermatheca  (5621.9) Adult Ovary  (3341.7) Adult Testis  (1222.7) Adult Male Accessory Gland  (9099.8) Adult Carcass  (5721.3) Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System  (2603.3) Larval Midgut  (4373.2) Larval Hindgut  (4203.9) Larval Malpighian Tubules  (4934.5) Larval Fat Body  (7686.2) Larval Salivary Gland  (7284.3) Larval Trachea  (5937.675) Larval Carcass  (4340.5) Adult Head  (4531.1) Adult Eye  (6342.575) Adult Brain  (2960.1) Adult Thoracic-Abdominal Ganglion  (4108.6) Adult Crop  (6041.4) Adult Midgut  (5101.6) Adult Hindgut  (5112) Adult Malpighian Tubules  (5126.4) Adult Fat Body  (5215) Adult Salivary Gland  (10420.8) Adult Heart  (6552.9) Adult VirginFemale Spermatheca  (5559.3) Adult InseminatedFemale Spermatheca  (5621.9) Adult Ovary  (3341.7) Adult Testis  (1222.7) Adult Male Accessory Gland  (9099.8) Adult Carcass  (5721.3) Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    2603.3 Larval Midgut    4373.2 Larval Hindgut    4203.9 Larval Malpighian Tubules    4934.5 Larval Fat Body    7686.2 Larval Salivary Gland    7284.3 Larval Trachea    5937.675 Larval Carcass    4340.5 Adult Head    4531.1 Adult Eye    6342.575 Adult Brain    2960.1 Adult Thoracic-Abdominal Ganglion    4108.6 Adult Crop    6041.4 Adult Midgut    5101.6 Adult Hindgut    5112 Adult Malpighian Tubules    5126.4 Adult Fat Body    5215 Adult Salivary Gland    10420.8 Adult Heart    6552.9 Adult VirginFemale Spermatheca    5559.3 Adult InseminatedFemale Spermatheca    5621.9 Adult Ovary    3341.7 Adult Testis    1222.7 Adult Male Accessory Gland    9099.8 Adult Carcass    5721.3 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    2603.3 Larval Midgut    4373.2 Larval Hindgut    4203.9 Larval Malpighian Tubules    4934.5 Larval Fat Body    7686.2 Larval Salivary Gland    7284.3 Larval Trachea    5937.675 Larval Carcass    4340.5 Adult Head    4531.1 Adult Eye    6342.575 Adult Brain    2960.1 Adult Thoracic-Abdominal Ganglion    4108.6 Adult Crop    6041.4 Adult Midgut    5101.6 Adult Hindgut    5112 Adult Malpighian Tubules    5126.4 Adult Fat Body    5215 Adult Salivary Gland    10420.8 Adult Heart    6552.9 Adult VirginFemale Spermatheca    5559.3 Adult InseminatedFemale Spermatheca    5621.9 Adult Ovary    3341.7 Adult Testis    1222.7 Adult Male Accessory Gland    9099.8 Adult Carcass    5721.3 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (2603.3) Larval Midgut  (4373.2) Larval Hindgut  (4203.9) Larval Malpighian Tubules  (4934.5) Larval Fat Body  (7686.2) Larval Salivary Gland  (7284.3) Larval Trachea  (5937.675) Larval Carcass  (4340.5) Adult Head  (4531.1) Adult Eye  (6342.575) Adult Brain  (2960.1) Adult Thoracic-Abdominal Ganglion  (4108.6) Adult Crop  (6041.4) Adult Midgut  (5101.6) Adult Hindgut  (5112) Adult Malpighian Tubules  (5126.4) Adult Fat Body  (5215) Adult Salivary Gland  (10420.8) Adult Heart  (6552.9) Adult VirginFemale Spermatheca  (5559.3) Adult InseminatedFemale Spermatheca  (5621.9) Adult Ovary  (3341.7) Adult Testis  (1222.7) Adult Male Accessory Gland  (9099.8) Adult Carcass  (5721.3) Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System  (2603.3) Larval Midgut  (4373.2) Larval Hindgut  (4203.9) Larval Malpighian Tubules  (4934.5) Larval Fat Body  (7686.2) Larval Salivary Gland  (7284.3) Larval Trachea  (5937.675) Larval Carcass  (4340.5) Adult Head  (4531.1) Adult Eye  (6342.575) Adult Brain  (2960.1) Adult Thoracic-Abdominal Ganglion  (4108.6) Adult Crop  (6041.4) Adult Midgut  (5101.6) Adult Hindgut  (5112) Adult Malpighian Tubules  (5126.4) Adult Fat Body  (5215) Adult Salivary Gland  (10420.8) Adult Heart  (6552.9) Adult VirginFemale Spermatheca  (5559.3) Adult InseminatedFemale Spermatheca  (5621.9) Adult Ovary  (3341.7) Adult Testis  1222.7 Adult Male Accessory Gland  (9099.8) Adult Carcass  (5721.3) Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    2603.3 Larval Midgut    4373.2 Larval Hindgut    4203.9 Larval Malpighian Tubules    4934.5 Larval Fat Body    7686.2 Larval Salivary Gland    7284.3 Larval Trachea    5937.675 Larval Carcass    4340.5 Adult Head    4531.1 Adult Eye    6342.575 Adult Brain    2960.1 Adult Thoracic-Abdominal Ganglion    4108.6 Adult Crop    6041.4 Adult Midgut    5101.6 Adult Hindgut    5112 Adult Malpighian Tubules    5126.4 Adult Fat Body    5215 Adult Salivary Gland    10420.8 Adult Heart    6552.9 Adult VirginFemale Spermatheca    5559.3 Adult InseminatedFemale Spermatheca    5621.9 Adult Ovary    3341.7 Adult Testis    1222.7 Adult Male Accessory Gland    9099.8 Adult Carcass    5721.3 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    4531.1   NA  Eye    6342.575   NA  Brain    2960.1   2603.3  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    4108.6   NA  Crop    6041.4   4373.2  Midgut    5101.6   4203.9  Hindgut    5112   4934.5  Malpighian Tubules    5126.4   7686.2  Fat Body    5215   7284.3  Salivary Gland    10420.8   NA  Heart    6552.9   5937.675  Trachea    NA   NA  VirginFemale Spermatheca    5559.3   NA  InseminatedFemale Spermatheca    5621.9   NA  Ovary    3341.7   NA  Testis    1222.7   NA  Male Accessory Gland    9099.8   4340.5  Carcass    5721.3 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    2392 central nervous system, larvae L3    1895 central nervous system, pupae P8    881 head, virgin 1-day female    834 head, virgin 4-day female    1397 head, virgin 20-day female    1732 head, mated 1-day female    827 head, mated 4-day female    1213 head, mated 20-day female    1389 head, mated 1-day male    842 head, mated 4-day male    994 head, mated 20-day male    1116 salivary gland, larvae L3 wandering    702 salivary gland, white prepupae    1980 digestive system, larvae L3 wandering    1165 digestive system, 1-day adult    1335 digestive system, 4-day adult    1220 digestive system, 20-day adult    1427 fat body, larvae L3 wandering    1102 fat body, white prepupae    730 fat body, pupae P8    2192 carcass, larvae L3 wandering    1745 carcass, 1-day adult    890 carcass, 4-day adult    1033 carcass, 20-day adult    1511 ovary, virgin 4-day female    1773 ovary, mated 4-day female    1430 testis, mated 4-day male    1053 accessory gland, mated 4-day male    1480 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (2392) central nervous system, larvae L3  (1895) central nervous system, pupae P8  (881) head, virgin 1-day female  (834) head, virgin 4-day female  (1397) head, virgin 20-day female  (1732) head, mated 1-day female  (827) head, mated 4-day female  (1213) head, mated 20-day female  (1389) head, mated 1-day male  (842) head, mated 4-day male  (994) head, mated 20-day male  (1116) salivary gland, larvae L3 wandering  (702) salivary gland, white prepupae  (1980) digestive system, larvae L3 wandering  (1165) digestive system, 1-day adult  (1335) digestive system, 4-day adult  (1220) digestive system, 20-day adult  (1427) fat body, larvae L3 wandering  (1102) fat body, white prepupae  (730) fat body, pupae P8  (2192) carcass, larvae L3 wandering  (1745) carcass, 1-day adult  (890) carcass, 4-day adult  (1033) carcass, 20-day adult  (1511) ovary, virgin 4-day female  (1773) ovary, mated 4-day female  (1430) testis, mated 4-day male  (1053) accessory gland, mated 4-day male  (1480) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (2392) central nervous system, larvae L3  (1895) central nervous system, pupae P8  (881) head, virgin 1-day female  (834) head, virgin 4-day female  (1397) head, virgin 20-day female  (1732) head, mated 1-day female  (827) head, mated 4-day female  (1213) head, mated 20-day female  (1389) head, mated 1-day male  (842) head, mated 4-day male  (994) head, mated 20-day male  (1116) salivary gland, larvae L3 wandering  (702) salivary gland, white prepupae  (1980) digestive system, larvae L3 wandering  (1165) digestive system, 1-day adult  (1335) digestive system, 4-day adult  (1220) digestive system, 20-day adult  (1427) fat body, larvae L3 wandering  (1102) fat body, white prepupae  (730) fat body, pupae P8  (2192) carcass, larvae L3 wandering  (1745) carcass, 1-day adult  (890) carcass, 4-day adult  (1033) carcass, 20-day adult  (1511) ovary, virgin 4-day female  (1773) ovary, mated 4-day female  (1430) testis, mated 4-day male  (1053) accessory gland, mated 4-day male  (1480) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    2392 central nervous system, larvae L3    1895 central nervous system, pupae P8    881 head, virgin 1-day female    834 head, virgin 4-day female    1397 head, virgin 20-day female    1732 head, mated 1-day female    827 head, mated 4-day female    1213 head, mated 20-day female    1389 head, mated 1-day male    842 head, mated 4-day male    994 head, mated 20-day male    1116 salivary gland, larvae L3 wandering    702 salivary gland, white prepupae    1980 digestive system, larvae L3 wandering    1165 digestive system, 1-day adult    1335 digestive system, 4-day adult    1220 digestive system, 20-day adult    1427 fat body, larvae L3 wandering    1102 fat body, white prepupae    730 fat body, pupae P8    2192 carcass, larvae L3 wandering    1745 carcass, 1-day adult    890 carcass, 4-day adult    1033 carcass, 20-day adult    1511 ovary, virgin 4-day female    1773 ovary, mated 4-day female    1430 testis, mated 4-day male    1053 accessory gland, mated 4-day male    1480 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    2392 central nervous system, larvae L3    1895 central nervous system, pupae P8    881 head, virgin 1-day female    834 head, virgin 4-day female    1397 head, virgin 20-day female    1732 head, mated 1-day female    827 head, mated 4-day female    1213 head, mated 20-day female    1389 head, mated 1-day male    842 head, mated 4-day male    994 head, mated 20-day male    1116 salivary gland, larvae L3 wandering    702 salivary gland, white prepupae    1980 digestive system, larvae L3 wandering    1165 digestive system, 1-day adult    1335 digestive system, 4-day adult    1220 digestive system, 20-day adult    1427 fat body, larvae L3 wandering    1102 fat body, white prepupae    730 fat body, pupae P8    2192 carcass, larvae L3 wandering    1745 carcass, 1-day adult    890 carcass, 4-day adult    1033 carcass, 20-day adult    1511 ovary, virgin 4-day female    1773 ovary, mated 4-day female    1430 testis, mated 4-day male    1053 accessory gland, mated 4-day male    1480 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (2392) central nervous system, larvae L3  (1895) central nervous system, pupae P8  (881) head, virgin 1-day female  (834) head, virgin 4-day female  (1397) head, virgin 20-day female  (1732) head, mated 1-day female  (827) head, mated 4-day female  (1213) head, mated 20-day female  (1389) head, mated 1-day male  (842) head, mated 4-day male  (994) head, mated 20-day male  (1116) salivary gland, larvae L3 wandering  (702) salivary gland, white prepupae  (1980) digestive system, larvae L3 wandering  (1165) digestive system, 1-day adult  (1335) digestive system, 4-day adult  (1220) digestive system, 20-day adult  (1427) fat body, larvae L3 wandering  (1102) fat body, white prepupae  (730) fat body, pupae P8  (2192) carcass, larvae L3 wandering  (1745) carcass, 1-day adult  (890) carcass, 4-day adult  (1033) carcass, 20-day adult  (1511) ovary, virgin 4-day female  (1773) ovary, mated 4-day female  (1430) testis, mated 4-day male  (1053) accessory gland, mated 4-day male  (1480) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (2392) central nervous system, larvae L3  (1895) central nervous system, pupae P8  (881) head, virgin 1-day female  (834) head, virgin 4-day female  (1397) head, virgin 20-day female  (1732) head, mated 1-day female  (827) head, mated 4-day female  (1213) head, mated 20-day female  (1389) head, mated 1-day male  (842) head, mated 4-day male  (994) head, mated 20-day male  (1116) salivary gland, larvae L3 wandering  (702) salivary gland, white prepupae  (1980) digestive system, larvae L3 wandering  (1165) digestive system, 1-day adult  (1335) digestive system, 4-day adult  (1220) digestive system, 20-day adult  (1427) fat body, larvae L3 wandering  (1102) fat body, white prepupae  (730) fat body, pupae P8  (2192) carcass, larvae L3 wandering  (1745) carcass, 1-day adult  (890) carcass, 4-day adult  (1033) carcass, 20-day adult  (1511) ovary, virgin 4-day female  (1773) ovary, mated 4-day female  (1430) testis, mated 4-day male  (1053) accessory gland, mated 4-day male  (1480) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    2392 central nervous system, larvae L3    1895 central nervous system, pupae P8    881 head, virgin 1-day female    834 head, virgin 4-day female    1397 head, virgin 20-day female    1732 head, mated 1-day female    827 head, mated 4-day female    1213 head, mated 20-day female    1389 head, mated 1-day male    842 head, mated 4-day male    994 head, mated 20-day male    1116 salivary gland, larvae L3 wandering    702 salivary gland, white prepupae    1980 digestive system, larvae L3 wandering    1165 digestive system, 1-day adult    1335 digestive system, 4-day adult    1220 digestive system, 20-day adult    1427 fat body, larvae L3 wandering    1102 fat body, white prepupae    730 fat body, pupae P8    2192 carcass, larvae L3 wandering    1745 carcass, 1-day adult    890 carcass, 4-day adult    1033 carcass, 20-day adult    1511 ovary, virgin 4-day female    1773 ovary, mated 4-day female    1430 testis, mated 4-day male    1053 accessory gland, mated 4-day male    1480 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of very high expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, during early pupal stages, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    1908 embryo 02-04hr    2797 embryo 04-06hr    2666 embryo 06-08hr    2807 embryo 08-10hr    3042 embryo 10-12hr    3564 embryo 12-14hr    1939 embryo 14-16hr    2956 embryo 16-18hr    2435 embryo 18-20hr    2715 embryo 20-22hr    2539 embryo 22-24hr    2207 larva L1    3185 larva L2    2541 larva L3 12hr old    2120 larva L3 puffstage 1-2    1504 larva L3 puffstage 3-6    1501 larva L3 puffstage 7-9    1486 white prepupae new    1372 white prepupae 12hr    1380 white prepupae 24hr    1565 pupae 2d postWPP    1192 pupae 3d postWPP    953 pupae 4d postWPP    1260 adult male 01day    901 adult male 05day    959 adult male 30day    1054 adult female 01day    2284 adult female 05day    1861 adult female 30day    2035 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (1908) embryo 02-04hr  (2797) embryo 04-06hr  (2666) embryo 06-08hr  (2807) embryo 08-10hr  (3042) embryo 10-12hr  (3564) embryo 12-14hr  (1939) embryo 14-16hr  (2956) embryo 16-18hr  (2435) embryo 18-20hr  (2715) embryo 20-22hr  (2539) embryo 22-24hr  (2207) larva L1  (3185) larva L2  (2541) larva L3 12hr old  (2120) larva L3 puffstage 1-2  (1504) larva L3 puffstage 3-6  (1501) larva L3 puffstage 7-9  (1486) white prepupae new  (1372) white prepupae 12hr  (1380) white prepupae 24hr  (1565) pupae 2d postWPP  (1192) pupae 3d postWPP  (953) pupae 4d postWPP  (1260) adult male 01day  (901) adult male 05day  (959) adult male 30day  (1054) adult female 01day  (2284) adult female 05day  (1861) adult female 30day  (2035) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (1908) embryo 02-04hr  (2797) embryo 04-06hr  (2666) embryo 06-08hr  (2807) embryo 08-10hr  (3042) embryo 10-12hr  (3564) embryo 12-14hr  (1939) embryo 14-16hr  (2956) embryo 16-18hr  (2435) embryo 18-20hr  (2715) embryo 20-22hr  (2539) embryo 22-24hr  (2207) larva L1  (3185) larva L2  (2541) larva L3 12hr old  (2120) larva L3 puffstage 1-2  (1504) larva L3 puffstage 3-6  (1501) larva L3 puffstage 7-9  (1486) white prepupae new  (1372) white prepupae 12hr  (1380) white prepupae 24hr  (1565) pupae 2d postWPP  (1192) pupae 3d postWPP  (953) pupae 4d postWPP  (1260) adult male 01day  (901) adult male 05day  (959) adult male 30day  (1054) adult female 01day  (2284) adult female 05day  (1861) adult female 30day  (2035) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1908 embryo 02-04hr    2797 embryo 04-06hr    2666 embryo 06-08hr    2807 embryo 08-10hr    3042 embryo 10-12hr    3564 embryo 12-14hr    1939 embryo 14-16hr    2956 embryo 16-18hr    2435 embryo 18-20hr    2715 embryo 20-22hr    2539 embryo 22-24hr    2207 larva L1    3185 larva L2    2541 larva L3 12hr old    2120 larva L3 puffstage 1-2    1504 larva L3 puffstage 3-6    1501 larva L3 puffstage 7-9    1486 white prepupae new    1372 white prepupae 12hr    1380 white prepupae 24hr    1565 pupae 2d postWPP    1192 pupae 3d postWPP    953 pupae 4d postWPP    1260 adult male 01day    901 adult male 05day    959 adult male 30day    1054 adult female 01day    2284 adult female 05day    1861 adult female 30day    2035 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    1908 embryo 02-04hr    2797 embryo 04-06hr    2666 embryo 06-08hr    2807 embryo 08-10hr    3042 embryo 10-12hr    3564 embryo 12-14hr    1939 embryo 14-16hr    2956 embryo 16-18hr    2435 embryo 18-20hr    2715 embryo 20-22hr    2539 embryo 22-24hr    2207 larva L1    3185 larva L2    2541 larva L3 12hr old    2120 larva L3 puffstage 1-2    1504 larva L3 puffstage 3-6    1501 larva L3 puffstage 7-9    1486 white prepupae new    1372 white prepupae 12hr    1380 white prepupae 24hr    1565 pupae 2d postWPP    1192 pupae 3d postWPP    953 pupae 4d postWPP    1260 adult male 01day    901 adult male 05day    959 adult male 30day    1054 adult female 01day    2284 adult female 05day    1861 adult female 30day    2035 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (1908) embryo 02-04hr  (2797) embryo 04-06hr  (2666) embryo 06-08hr  (2807) embryo 08-10hr  (3042) embryo 10-12hr  (3564) embryo 12-14hr  (1939) embryo 14-16hr  (2956) embryo 16-18hr  (2435) embryo 18-20hr  (2715) embryo 20-22hr  (2539) embryo 22-24hr  (2207) larva L1  (3185) larva L2  (2541) larva L3 12hr old  (2120) larva L3 puffstage 1-2  (1504) larva L3 puffstage 3-6  (1501) larva L3 puffstage 7-9  (1486) white prepupae new  (1372) white prepupae 12hr  (1380) white prepupae 24hr  (1565) pupae 2d postWPP  (1192) pupae 3d postWPP  (953) pupae 4d postWPP  (1260) adult male 01day  (901) adult male 05day  (959) adult male 30day  (1054) adult female 01day  (2284) adult female 05day  (1861) adult female 30day  (2035) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (1908) embryo 02-04hr  (2797) embryo 04-06hr  (2666) embryo 06-08hr  (2807) embryo 08-10hr  (3042) embryo 10-12hr  (3564) embryo 12-14hr  (1939) embryo 14-16hr  (2956) embryo 16-18hr  (2435) embryo 18-20hr  (2715) embryo 20-22hr  (2539) embryo 22-24hr  (2207) larva L1  (3185) larva L2  (2541) larva L3 12hr old  (2120) larva L3 puffstage 1-2  (1504) larva L3 puffstage 3-6  (1501) larva L3 puffstage 7-9  (1486) white prepupae new  (1372) white prepupae 12hr  (1380) white prepupae 24hr  (1565) pupae 2d postWPP  (1192) pupae 3d postWPP  (953) pupae 4d postWPP  (1260) adult male 01day  (901) adult male 05day  (959) adult male 30day  (1054) adult female 01day  (2284) adult female 05day  (1861) adult female 30day  (2035) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1908 embryo 02-04hr    2797 embryo 04-06hr    2666 embryo 06-08hr    2807 embryo 08-10hr    3042 embryo 10-12hr    3564 embryo 12-14hr    1939 embryo 14-16hr    2956 embryo 16-18hr    2435 embryo 18-20hr    2715 embryo 20-22hr    2539 embryo 22-24hr    2207 larva L1    3185 larva L2    2541 larva L3 12hr old    2120 larva L3 puffstage 1-2    1504 larva L3 puffstage 3-6    1501 larva L3 puffstage 7-9    1486 white prepupae new    1372 white prepupae 12hr    1380 white prepupae 24hr    1565 pupae 2d postWPP    1192 pupae 3d postWPP    953 pupae 4d postWPP    1260 adult male 01day    901 adult male 05day    959 adult male 30day    1054 adult female 01day    2284 adult female 05day    1861 adult female 30day    2035 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    8155 Schneider line 2 Sg4    5497 embryonic 1182-4H    5174 embryonic GM2    2415 embryonic Kc167    2110 embryonic S1    3414 embryonic S3    2434 leg disc CME L1    5374 wing disc CME-W2    2691 wing disc ML-DmD8    5666 wing disc ML-DmD9    5207 wing disc ML-DmD16-c3    3119 wing disc ML-DmD21    9585 wing disc ML-DmD32    6026 haltere disc ML-DmD17-c3    2690 eye-antennal disc ML-DmD11    4628 antennal disc ML-DmD20-c5    4001 mixed discs ML-DmD4-c1    5369 CNS ML-DmBG1-c1    3811 CNS ML-DmBG2-c2    4942 tumorous blood cells mbn2    3264 ovary fGS/OSS    1364 ovary OSC    1245 ovary OSS    596 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (8155) Schneider line 2 Sg4  (5497) embryonic 1182-4H  (5174) embryonic GM2  (2415) embryonic Kc167  (2110) embryonic S1  (3414) embryonic S3  (2434) leg disc CME L1  (5374) wing disc CME-W2  (2691) wing disc ML-DmD8  (5666) wing disc ML-DmD9  (5207) wing disc ML-DmD16-c3  (3119) wing disc ML-DmD21  (9585) wing disc ML-DmD32  (6026) haltere disc ML-DmD17-c3  (2690) eye-antennal disc ML-DmD11  (4628) antennal disc ML-DmD20-c5  (4001) mixed discs ML-DmD4-c1  (5369) CNS ML-DmBG1-c1  (3811) CNS ML-DmBG2-c2  (4942) tumorous blood cells mbn2  (3264) ovary fGS/OSS  (1364) ovary OSC  (1245) ovary OSS  (596) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  (8155) Schneider line 2 Sg4  (5497) embryonic 1182-4H  (5174) embryonic GM2  (2415) embryonic Kc167  (2110) embryonic S1  (3414) embryonic S3  (2434) leg disc CME L1  (5374) wing disc CME-W2  (2691) wing disc ML-DmD8  (5666) wing disc ML-DmD9  (5207) wing disc ML-DmD16-c3  (3119) wing disc ML-DmD21  (9585) wing disc ML-DmD32  (6026) haltere disc ML-DmD17-c3  (2690) eye-antennal disc ML-DmD11  (4628) antennal disc ML-DmD20-c5  (4001) mixed discs ML-DmD4-c1  (5369) CNS ML-DmBG1-c1  (3811) CNS ML-DmBG2-c2  (4942) tumorous blood cells mbn2  (3264) ovary fGS/OSS  (1364) ovary OSC  (1245) ovary OSS  (596) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    8155 Schneider line 2 Sg4    5497 embryonic 1182-4H    5174 embryonic GM2    2415 embryonic Kc167    2110 embryonic S1    3414 embryonic S3    2434 leg disc CME L1    5374 wing disc CME-W2    2691 wing disc ML-DmD8    5666 wing disc ML-DmD9    5207 wing disc ML-DmD16-c3    3119 wing disc ML-DmD21    9585 wing disc ML-DmD32    6026 haltere disc ML-DmD17-c3    2690 eye-antennal disc ML-DmD11    4628 antennal disc ML-DmD20-c5    4001 mixed discs ML-DmD4-c1    5369 CNS ML-DmBG1-c1    3811 CNS ML-DmBG2-c2    4942 tumorous blood cells mbn2    3264 ovary fGS/OSS    1364 ovary OSC    1245 ovary OSS    596 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    8155 Schneider line 2 Sg4    5497 embryonic 1182-4H    5174 embryonic GM2    2415 embryonic Kc167    2110 embryonic S1    3414 embryonic S3    2434 leg disc CME L1    5374 wing disc CME-W2    2691 wing disc ML-DmD8    5666 wing disc ML-DmD9    5207 wing disc ML-DmD16-c3    3119 wing disc ML-DmD21    9585 wing disc ML-DmD32    6026 haltere disc ML-DmD17-c3    2690 eye-antennal disc ML-DmD11    4628 antennal disc ML-DmD20-c5    4001 mixed discs ML-DmD4-c1    5369 CNS ML-DmBG1-c1    3811 CNS ML-DmBG2-c2    4942 tumorous blood cells mbn2    3264 ovary fGS/OSS    1364 ovary OSC    1245 ovary OSS    596 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (8155) Schneider line 2 Sg4  (5497) embryonic 1182-4H  (5174) embryonic GM2  (2415) embryonic Kc167  (2110) embryonic S1  (3414) embryonic S3  (2434) leg disc CME L1  (5374) wing disc CME-W2  (2691) wing disc ML-DmD8  (5666) wing disc ML-DmD9  (5207) wing disc ML-DmD16-c3  (3119) wing disc ML-DmD21  (9585) wing disc ML-DmD32  (6026) haltere disc ML-DmD17-c3  (2690) eye-antennal disc ML-DmD11  (4628) antennal disc ML-DmD20-c5  (4001) mixed discs ML-DmD4-c1  (5369) CNS ML-DmBG1-c1  (3811) CNS ML-DmBG2-c2  (4942) tumorous blood cells mbn2  (3264) ovary fGS/OSS  (1364) ovary OSC  (1245) ovary OSS  (596) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  (8155) Schneider line 2 Sg4  (5497) embryonic 1182-4H  (5174) embryonic GM2  (2415) embryonic Kc167  (2110) embryonic S1  (3414) embryonic S3  (2434) leg disc CME L1  (5374) wing disc CME-W2  (2691) wing disc ML-DmD8  (5666) wing disc ML-DmD9  (5207) wing disc ML-DmD16-c3  (3119) wing disc ML-DmD21  (9585) wing disc ML-DmD32  (6026) haltere disc ML-DmD17-c3  (2690) eye-antennal disc ML-DmD11  (4628) antennal disc ML-DmD20-c5  (4001) mixed discs ML-DmD4-c1  (5369) CNS ML-DmBG1-c1  (3811) CNS ML-DmBG2-c2  (4942) tumorous blood cells mbn2  (3264) ovary fGS/OSS  (1364) ovary OSC  (1245) ovary OSS  (596) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    8155 Schneider line 2 Sg4    5497 embryonic 1182-4H    5174 embryonic GM2    2415 embryonic Kc167    2110 embryonic S1    3414 embryonic S3    2434 leg disc CME L1    5374 wing disc CME-W2    2691 wing disc ML-DmD8    5666 wing disc ML-DmD9    5207 wing disc ML-DmD16-c3    3119 wing disc ML-DmD21    9585 wing disc ML-DmD32    6026 haltere disc ML-DmD17-c3    2690 eye-antennal disc ML-DmD11    4628 antennal disc ML-DmD20-c5    4001 mixed discs ML-DmD4-c1    5369 CNS ML-DmBG1-c1    3811 CNS ML-DmBG2-c2    4942 tumorous blood cells mbn2    3264 ovary fGS/OSS    1364 ovary OSC    1245 ovary OSS    596 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    1401 cold shock, 4-day adult    1182 heat shock, 4-day adult    1596 Cadmium 50 mM 6 hrs, larvae L3    1877 Cadmium 50 mM 12 hrs, larvae L3    1349 Cadmium 50 mM 48 hrs, 4-day adult    1275 Cadmium 100 mM 48 hrs, 4-day adult    1443 Copper 0.5 mM 12 hrs, larvae L3    1606 Copper 15 mM 48 hrs, 4-day adult    482 Zinc 5 mM 12 hrs, larvae L3    1266 Zinc 4.5 mM 48 hrs, 4-day adult    663 Ethanol 2.5% 3 hrs, larvae L3    1775 Ethanol 5% 3 hrs, larvae L3    1473 Ethanol 10% 3 hrs, larvae L3    1512 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1452 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1662 Caffeine 25 mg/ml 48 hrs, 4-day adult    1097 Paraquat 5 mM 48 hrs, 4-day adult    1536 Paraquat 10 mM 48 hrs, 4-day adult    1740 Rotenone 2 μg 12 hrs, larvae L3    1634 Rotenone 8 μg 12 hrs, larvae L3    2141 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (1401) cold shock, 4-day adult  (1182) heat shock, 4-day adult  (1596) Cadmium 50 mM 6 hrs, larvae L3  (1877) Cadmium 50 mM 12 hrs, larvae L3  (1349) Cadmium 50 mM 48 hrs, 4-day adult  (1275) Cadmium 100 mM 48 hrs, 4-day adult  (1443) Copper 0.5 mM 12 hrs, larvae L3  (1606) Copper 15 mM 48 hrs, 4-day adult  (482) Zinc 5 mM 12 hrs, larvae L3  (1266) Zinc 4.5 mM 48 hrs, 4-day adult  (663) Ethanol 2.5% 3 hrs, larvae L3  (1775) Ethanol 5% 3 hrs, larvae L3  (1473) Ethanol 10% 3 hrs, larvae L3  (1512) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (1452) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (1662) Caffeine 25 mg/ml 48 hrs, 4-day adult  (1097) Paraquat 5 mM 48 hrs, 4-day adult  (1536) Paraquat 10 mM 48 hrs, 4-day adult  (1740) Rotenone 2 μg 12 hrs, larvae L3  (1634) Rotenone 8 μg 12 hrs, larvae L3  (2141) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult  (1401) cold shock, 4-day adult  (1182) heat shock, 4-day adult  (1596) Cadmium 50 mM 6 hrs, larvae L3  (1877) Cadmium 50 mM 12 hrs, larvae L3  (1349) Cadmium 50 mM 48 hrs, 4-day adult  (1275) Cadmium 100 mM 48 hrs, 4-day adult  (1443) Copper 0.5 mM 12 hrs, larvae L3  (1606) Copper 15 mM 48 hrs, 4-day adult  (482) Zinc 5 mM 12 hrs, larvae L3  (1266) Zinc 4.5 mM 48 hrs, 4-day adult  (663) Ethanol 2.5% 3 hrs, larvae L3  (1775) Ethanol 5% 3 hrs, larvae L3  (1473) Ethanol 10% 3 hrs, larvae L3  (1512) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (1452) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (1662) Caffeine 25 mg/ml 48 hrs, 4-day adult  (1097) Paraquat 5 mM 48 hrs, 4-day adult  (1536) Paraquat 10 mM 48 hrs, 4-day adult  (1740) Rotenone 2 μg 12 hrs, larvae L3  (1634) Rotenone 8 μg 12 hrs, larvae L3  (2141) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    1401 cold shock, 4-day adult    1182 heat shock, 4-day adult    1596 Cadmium 50 mM 6 hrs, larvae L3    1877 Cadmium 50 mM 12 hrs, larvae L3    1349 Cadmium 50 mM 48 hrs, 4-day adult    1275 Cadmium 100 mM 48 hrs, 4-day adult    1443 Copper 0.5 mM 12 hrs, larvae L3    1606 Copper 15 mM 48 hrs, 4-day adult    482 Zinc 5 mM 12 hrs, larvae L3    1266 Zinc 4.5 mM 48 hrs, 4-day adult    663 Ethanol 2.5% 3 hrs, larvae L3    1775 Ethanol 5% 3 hrs, larvae L3    1473 Ethanol 10% 3 hrs, larvae L3    1512 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1452 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1662 Caffeine 25 mg/ml 48 hrs, 4-day adult    1097 Paraquat 5 mM 48 hrs, 4-day adult    1536 Paraquat 10 mM 48 hrs, 4-day adult    1740 Rotenone 2 μg 12 hrs, larvae L3    1634 Rotenone 8 μg 12 hrs, larvae L3    2141 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    1401 cold shock, 4-day adult    1182 heat shock, 4-day adult    1596 Cadmium 50 mM 6 hrs, larvae L3    1877 Cadmium 50 mM 12 hrs, larvae L3    1349 Cadmium 50 mM 48 hrs, 4-day adult    1275 Cadmium 100 mM 48 hrs, 4-day adult    1443 Copper 0.5 mM 12 hrs, larvae L3    1606 Copper 15 mM 48 hrs, 4-day adult    482 Zinc 5 mM 12 hrs, larvae L3    1266 Zinc 4.5 mM 48 hrs, 4-day adult    663 Ethanol 2.5% 3 hrs, larvae L3    1775 Ethanol 5% 3 hrs, larvae L3    1473 Ethanol 10% 3 hrs, larvae L3    1512 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1452 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1662 Caffeine 25 mg/ml 48 hrs, 4-day adult    1097 Paraquat 5 mM 48 hrs, 4-day adult    1536 Paraquat 10 mM 48 hrs, 4-day adult    1740 Rotenone 2 μg 12 hrs, larvae L3    1634 Rotenone 8 μg 12 hrs, larvae L3    2141 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (1401) cold shock, 4-day adult  (1182) heat shock, 4-day adult  (1596) Cadmium 50 mM 6 hrs, larvae L3  (1877) Cadmium 50 mM 12 hrs, larvae L3  (1349) Cadmium 50 mM 48 hrs, 4-day adult  (1275) Cadmium 100 mM 48 hrs, 4-day adult  (1443) Copper 0.5 mM 12 hrs, larvae L3  (1606) Copper 15 mM 48 hrs, 4-day adult  (482) Zinc 5 mM 12 hrs, larvae L3  (1266) Zinc 4.5 mM 48 hrs, 4-day adult  (663) Ethanol 2.5% 3 hrs, larvae L3  (1775) Ethanol 5% 3 hrs, larvae L3  (1473) Ethanol 10% 3 hrs, larvae L3  (1512) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (1452) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (1662) Caffeine 25 mg/ml 48 hrs, 4-day adult  (1097) Paraquat 5 mM 48 hrs, 4-day adult  (1536) Paraquat 10 mM 48 hrs, 4-day adult  (1740) Rotenone 2 μg 12 hrs, larvae L3  (1634) Rotenone 8 μg 12 hrs, larvae L3  (2141) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult  (1401) cold shock, 4-day adult  (1182) heat shock, 4-day adult  (1596) Cadmium 50 mM 6 hrs, larvae L3  (1877) Cadmium 50 mM 12 hrs, larvae L3  (1349) Cadmium 50 mM 48 hrs, 4-day adult  (1275) Cadmium 100 mM 48 hrs, 4-day adult  (1443) Copper 0.5 mM 12 hrs, larvae L3  (1606) Copper 15 mM 48 hrs, 4-day adult  (482) Zinc 5 mM 12 hrs, larvae L3  (1266) Zinc 4.5 mM 48 hrs, 4-day adult  (663) Ethanol 2.5% 3 hrs, larvae L3  (1775) Ethanol 5% 3 hrs, larvae L3  (1473) Ethanol 10% 3 hrs, larvae L3  (1512) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (1452) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (1662) Caffeine 25 mg/ml 48 hrs, 4-day adult  (1097) Paraquat 5 mM 48 hrs, 4-day adult  (1536) Paraquat 10 mM 48 hrs, 4-day adult  (1740) Rotenone 2 μg 12 hrs, larvae L3  (1634) Rotenone 8 μg 12 hrs, larvae L3  (2141) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    1401 cold shock, 4-day adult    1182 heat shock, 4-day adult    1596 Cadmium 50 mM 6 hrs, larvae L3    1877 Cadmium 50 mM 12 hrs, larvae L3    1349 Cadmium 50 mM 48 hrs, 4-day adult    1275 Cadmium 100 mM 48 hrs, 4-day adult    1443 Copper 0.5 mM 12 hrs, larvae L3    1606 Copper 15 mM 48 hrs, 4-day adult    482 Zinc 5 mM 12 hrs, larvae L3    1266 Zinc 4.5 mM 48 hrs, 4-day adult    663 Ethanol 2.5% 3 hrs, larvae L3    1775 Ethanol 5% 3 hrs, larvae L3    1473 Ethanol 10% 3 hrs, larvae L3    1512 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1452 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1662 Caffeine 25 mg/ml 48 hrs, 4-day adult    1097 Paraquat 5 mM 48 hrs, 4-day adult    1536 Paraquat 10 mM 48 hrs, 4-day adult    1740 Rotenone 2 μg 12 hrs, larvae L3    1634 Rotenone 8 μg 12 hrs, larvae L3    2141 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_22 mE1_20_mRNA_expression_cluster_01
External Data & Images
Linkouts	BDGP expression data • LD47488 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0002622 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG6779-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for RpS3 Stages(s) 1-3 Stages(s) 4-6 Stages(s) 7-8 Stages(s) 9-10 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele cell lethal | recessive RpS3unspecified lethal, with Scer\GAL4pnr-MD237 RpS3GD4577 lethal | pupal stage, with Scer\GAL4pnr-MD237 RpS3GD4577 lethal |