Gene Dmel\M(3)100CF

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General Information

Symbol

Dmel\M(3)100CF

Species

D. melanogaster

Name

Minute (3) 100CF

Annotation symbol

Feature type

gene

FlyBase ID

FBgn0002628

Gene Model Status

Unannotated

Stock availability

None publicly available

Also Known As

M(3)f

Genomic Location

Chromosome (arm)

Recombination map

3-105

Cytogenetic map

100C1-100F5

Sequence location

Summary Information

Automatically generated summary

See sections below for more information

The gene Minute (3) 100CF is referred to in FlyBase by the symbol Dmel\M(3)100CF (FBgn0002628). It is a gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. One allele is reported. The phenotype of this allele is annotated with: macrochaeta. It has no annotated transcripts. Gene has not been localized to the genome sequence.

User Contributed Data

Beta version, feedback welcome

Phenotypic Description from the Red Book (Lindsley & Zimm 1992)

Gene/Allele symbols may differ from current usage

M(3)100CF

Identified by virtue of the strong Minute phenotype of heterozygotes for terminal deficiency for the region distal to 100C; very few escapers (Kongsuwan, Dellavalle, and Merriam, 1986, Genetics 112: 539-50). Reuter, Dorn, Wustmann, Friede, and Rauh (1986, Mol. Gen. Genet. 202: 481-87) describe su(var)3-12, which maps to 3-100.2, is associated with a Minute, and is deficient for 100F3-5.

Recent Updates

Description

What does this section display?

This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).

What does this section not display?

This section does not currently display links that were removed or gene model changes.

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FB2013_03

FB2013_02

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Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

100C1-100F5

Left limit from complementation mapping against T(Y;3)L129 (citation unavailable)

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

3-105

Left of (cM)

Right of (cM)

Notes

Gene Model & Products

Comments on Gene Model

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

Additional Polypeptide Data & Comments

Reported size (kDa)

Comments

External Data

Linkouts

Crossreferences

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

UniProtKB/Swiss-Prot

UniProtKB/TrEMBL

Mapped Features

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

Crossreferences

Expression Data

Transcript Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization (GO Cellular Component)

CV term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

Reference

See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

FlyAtlas Anatomy Microarray

modENCODE Anatomy RNA-Seq

modENCODE Development RNA-Seq

modENCODE Cell Lines RNA-Seq

modENCODE Treatments RNA-Seq

Expression Clusters

External Data & Images

Linkouts

Alleles & Phenotypes

Summary of Allele Phenotypes

Sterility

Allele

female sterile

M(3)100CF¹

Other Phenotypes

Allele

Minute | dominant

M(3)100CF¹

visible | dominant

M(3)100CF¹

Phenotype manifest in

Allele

macrochaeta

M(3)100CF¹

Classical Alleles ( 1 )

For All Classical Alleles Show

Allele of M(3)100CF	Class	Mutagen	Stocks	Known lesion
M(3)100CF¹			0	--

Alleles Carried on Transgenic Constructs ( 0 )

For All Alleles Carried on Transgenic Constructs Show

Allele of M(3)100CF	Class	Mutagen	Stocks	Known lesion

Aneuploid Aberrations

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

Insertions

Type of insertions

Name

Expression data

Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )

Terms Based on Experimental Evidence ( 0 terms )

Terms Based on Predictions or Assertions ( 0 terms )

Sequence Ontology: Class of Gene

gene

Interactions & Pathways

Summary of Physical Interactions

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

M(3)100CF allele

Gene

References

External Data

Linkouts

Orthologs

OrthoDB Orthologs (0) - based on analysis using Dmel annotation version 5.41

OrthoDB Ortholog Groups

OrthoDB orthology group searches

(Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288)

Drosophila inclusive ortholog search

No orthologs identified

Dipteran inclusive ortholog search

No orthologs identified

Insect inclusive ortholog search

No orthologs identified

Arthropod inclusive ortholog search

No orthologs identified

Metazoa inclusive ortholog search

No orthologs identified

Orthologs in Drosophila Species (None identified)

No orthologies identified

Orthologs in non-Drosophila Dipterans (None identified)

No non-Drosophilid orthologies identified

Orthologs in non-Dipteran Insects (None identified)

No non-Dipteran orthologies identified

Orthologs in non-Insect Arthropods (None identified)

No non-Insect Arthropod orthologies identified

Orthologs in non-Arthropod Metazoa (None identified)

No non-Arthropod Metazoa orthologies identified

Human Orthologs (0)

Gene

OMIM

HGNC

AAA Orthologs (0) based on analysis using Dmel annotation version 4.3

No orthologs identified

Stocks & Reagents

Stocks Listed in FlyBase ( 0 )

Genomic Clones ( 0 )

cDNA Clones ( 0 )

cDNA Clones, Fully Sequenced

BDGP DGC clones

Other clones

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi & Array Information

Linkouts

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

•

49462

Antibody Information

Other Information

Discoverer

Etymology

Identification

Relationship to Other Genes

Source for database identity of

Source for database merge of

Additional comments

"RpL6" likely corresponds to "M(3)100CF".

(Marygold et al., 2007)

Other Comments

The distal segment of 3R tentatively associated with a Minute by Lindsley et al. (1972) on the basis of their failure to recover terminal deficiencies and the published genetic position of M(3)99E at 3-106.2; Kongsuwan et al. (1986) followed suit, placing "M(3)g" distal to "M(3)f"; however, phenotypic considerations led Lindsley and Zimm (1992) to consider "M(3)g" as corresponding to M(3)99E and "M(3)f" as corresponding to M(3)100CF.

One of a class of genes (see MIN record) that when present in one, rather than two, copies, produce a characteristic phenotype consisting of short slender bristles and delayed development. Identified by virtue of the strong Minute phenotype of heterozygotes for terminal deficiency for the region distal to 100C; very few escapers (Kongsuwan et al., 1986). Reuter et al. (1986) describe Su(var)3-12, which maps to 3-100.2, is associated with a Minute and is deficient for 100F3-5.

External Crossreferences & Linkouts

Sequence Crossreferences

Other Crossreferences

Linkouts

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

•

49462

Synonyms & Secondary IDs ( 4 )

Reported As

Symbol Synonym

M(3)100CF

(Marygold et al., 2007)

M(3)f

(Lindsley et al., 1972, Seattle-La Jolla Drosophila Laboratories, 1971, )

unnamed

(Reuter et al., 1986)

Name Synonym

Minute (3) 100CF

Secondary FlyBase IDs

References ( 9 )

Research paper

Marygold et al., 2007, Genome Biol. 8(10): R216: The ribosomal protein genes and Minute loci of Drosophila melanogaster. [FBrf0205398]
Kongsuwan et al., 1986, Genetics 112: 539--550: Deficiency analysis of the tip of chromosome 3R in Drosophila melanogaster. [FBrf0044462]
Reuter et al., 1986, Mol. Gen. Genet. 202(3): 481--487: Third chromosome suppressor of position-effect variegation loci in Drosophila melanogaster. [FBrf0045055]
Kemphues et al., 1983, Genetics 105: 345--356: Genetic analysis of B2t, the structural gene for a testis-specific -tubulin subunit in Drosophila melanogaster. [FBrf0039448]
Lindsley et al., 1972, Genetics 71: 157--184: Segmental aneuploidy and the genetic gross structure of the Drosophila genome. [FBrf0023910]
Seattle-La Jolla Drosophila Laboratories, 1971, D. I. S. 47(Suppl.): 7pp: The use of Y-autosome translocations in the construction of autosomal duplications and deficiencies. (Special supplement to DIS 47). [FBrf0022239]
Bridges and Morgan, 1923, Publs Carnegie Instn 327: 1--251: The third-chromosome group of mutant characters of Drosophila melanogaster. [FBrf0001261]

Personal communication to FlyBase

Cook, 2006.1.31, Characterization of deletions and Minutes in chromosomal region 99-100.: Characterization of deletions and Minutes in chromosomal region 99-100. [FBrf0191633]

Book

Lindsley and Zimm, 1992, The Genome of Drosophila melanogaster.: The Genome of Drosophila melanogaster. [FBrf0066905]