A Database of Drosophila Genes & Genomes

FB2008_07, released August 8, 2008
 

Gene Dmel\Men

General Information
SymbolDmel\MenSpeciesD. melanogaster
NameMalic enzymeAnnotation symbolCG10120
Feature typeprotein_coding_geneFlyBase IDFBgn0002719
Created / Updated2003-12-01/2003-12-01
Genomic Location
Chromosome (arm)3RRecombination map3-51.73
Cytogenetic map87C6-87C7Sequence location3R:8,538,819..8,548,267 [-]
Map ( GBrowse ) detailed view
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Automatically generated summary

See sections below for more information
The gene Malic enzyme is referred to in FlyBase by the symbol Men (CG10120, FBgn0002719). It has the cytological map location 87C6-87C7. Its sequence location is 3R:8538819..8548267. Its molecular function is described as: malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity; NAD binding. It is involved in the biological process malate metabolic process. 42 alleles are reported. The phenotypes of these alleles are annotated with: germ cell; eye. It has 2 annotated transcripts and 2 annotated polypeptides.

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Gene/Allele symbols may differ from current usage
Men: Malic enzyme
Structural gene for malic enzyme = (S)-Malate: NADP+ oxidoreductase [MEN (EC 1.1.1.40)], a tetramer with subunit molecular weight of 58,000 (Lee, Langley, and Burkhart, 1978, Anal. Biochem. 86: 697-296) or 67,250 (Geer, Krochko, Oliver, Walker, and Williamson, 1980, Comp. Biochem. Physiol. 65B: 25-34). Biochemical characterization by Geer, et al., (1980). Enzyme known to provide NADP for lipogenesis; levels in larvae increased by dietary carbohydrate and decreased by dietary lipid. Levels normally high in early third-instar larvae, reducing to half in late third instar, rising again in ageing adults. Highest specific activity found in larval fat body and, among cellular fractions, in the cytosol (Geer, Krochko, and Williamson, 1979, Biochem. Genet. 17: 867-79). Histochemical staining of larval imaginal discs reveals enzyme activity localized to nervous elements, including ommatidial precursors, the morphogenetic furrow, and the optic nerve in the eye antennal disc; and the chordotonal organ and the nerve traversing the leg discs; wing, haltere, labial, and genital discs unstained; however genital disc derivatives, the ejaculatory duct and paragonia in males and oviducts of females are stained in adults (Finkbohner, Cunningham, and Kuhn, 1985, Wilhelm Roux's Arch. Dev. Biol. 194: 217-23). Staining of morphogenetic groove absent in D. simulans and in simulans-melanogaster hybrids except when such hybrids contain two copies of 3R from D. melanogaster and none from D. simulans (Kuhn and Sprey, 1987, Genetics 115: 277-81). All null alleles tested survive and are fertile in combination with Df(3R)ry3l, which lacks Men+ (Voelker et al.). The NADPH/NADP ratio in such null genotypes is one-seventh that of wild type (Geer et al., 1979). Presence of an extra dose of the region from 8D10-12 to 9A1-2 results in an approximately 25% increase in MEN activity (Williamson and Bentley, 1983, Genetics 103: 649-58).
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FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
87C6-87C7  
Limits computationally determined from genome sequence between P{lacW}Vha55j2E9 and P{PZ}CtBP03463  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
87D1-87D1
87D1-87D1
Experimentally Determined Recombination Data
Location
3-51.73
 
Left of (cM)
Right of (cM)
Notes
Based on 91 recombinants between kar and ry.
 
Molecular Map Data
Gene Order (in direction of increasing cytology)
References
Gene Order (overall orientation not stated)
References
Overall orientation not stated: mus308+ Men-
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Please see the GBrowse view of Dmel\Men for information on other features
detailed view FBtr0082662 FBtr0082661 FBtr0082660 FBpp0082131 FBpp0082130 FBpp0082129 FBti0011687 FBti0037933 FBti0043600 FBti0049765 FBti0099821 FBti0035951 FBti0035432 FBti0029153 FBti0007834 FBti0072350 FBti0037020 FBti0036577 FBti0007808 FBti0007798 FBti0033750 FBti0030083 FBti0034431 FBti0070526 FBti0037472 FBti0070746 FBti0018588 FBti0028178 FBti0008009 FBti0027097 FBti0034396 FBti0011522 FBti0069737 FBti0029625 FBti0058822 FBti0007839 FBti0007837 FBti0033967 FBti0037081 FBti0059217 FBti0029978 FBti0029053 FBti0054448 FBti0038093 FBti0016457 FBti0007944 FBti0038092 FBti0048096
Comments on Gene Model
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Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0082661
  2773
  759
FBtr0082660
  3015
  763
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kD)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
Men-PA  
FBpp0082130  
84.4  
759  
7.23  
Men-PB  
FBpp0082129  
84.6  
763  
6.60  
Additional Polypeptide Data & Comments
Reported size (kD)
Comments
External Data
Linkouts
PANTHER - Protein classification by function, families, and pathways
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
    UniProtKB/TrEMBL
    Maps to
    Does NOT map to
    Identified with
    hide Mapped Features & Mutations
    Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here
    Type
    Symbol & Location
    Additional Notes
    References
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    Linkouts
    DEDB - Drosophila exon database: splicing graphs
    Crossreferences
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    FlyBase-Curated Data
    Transcript and
    Protein data
    Please see the FlyBase Gene Expression Report for details of gene expression from the literature.
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    Stage
    Tissue/Position
    Reference
    Marker for
      Subcellular Localization
      CV Term
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      Stage
      Tissue/Position
      Reference
      Marker for
        Subcellular Localization
        CV Term
        hide Microarray Data
        Developmental timecourse, Costello et al., 2008 (Original data from Arbeitman et al., 2002)
        Untitled Document detailed view FBtr0082662 FBtr0082661 FBtr0082660
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        Linkouts
        FLIGHT - Cell culture data for RNAi and other high-throughput technologies
        FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
        GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies
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        Lethality
        Allele
        Other Phenotypes
        Allele