FB2025_01 , released February 20, 2025
Gene: Dmel\MRF
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General Information
Symbol
Dmel\MRF
Species
D. melanogaster
Name
Male recombination factor
Annotation Symbol
Feature Type
FlyBase ID
FBgn0002792
Gene Model Status
Stock Availability
Gene Summary
Contribute a Gene Snapshot for this gene.
Also Known As

MR

Function
Gene Ontology (GO) Annotations (0 terms)
Molecular Function (0 terms)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (0 terms)
Biological Process (0 terms)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (0 terms)
Cellular Component (0 terms)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (0 terms)
Gene Group (FlyBase)
Protein Family (UniProt)
-
Protein Signatures (InterPro)
    -
    Summaries
    Phenotypic Description (Red Book; Lindsley and Zimm 1992)
    MR: Male Recombination
    A series of second chromosomes isolated from natural populations in diverse regions of the globe that, in crosses of MR-bearing males to laboratory-strain females, but not in the reciprocal crosses, produce dysgenic progeny. Such progeny transmit the MR chromosome at reduced levels compared with the homologous second chromosome; abnormalities in spermiogenesis including failure of individualization observed in dysgenic males account for 70% of the deficiency in recovery of MR (Matthews, 1981, Genetics 97: 95-111). Increased levels of gonial recombination observed in both sons (Hiraizumi, 1971, Proc. Nat. Acad. Sci. USA 68: 268-700) and daughters [demonstrated in c3G females by Sinclair and Green (Mol. Gen. Genet. 170: 219-24)]; mitotic crossing over in wing disks unaffected (Thompson and Woodruff, 1980, Genetica 49: 77-80). Both sons and daughters exhibit increased rates of spontaneous mutations, both lethal (Slatko and Hiraizumi, 1973, Genetics 75: 643-49) and at some but not all specific loci (e.g., Green, 1977, Proc. Nat. Acad. Sci. USA 74: 3490-93); the latter types of mutants usually unstable, undergoing further mutation either to more extreme alleles or back to wild type; increased mutation rates observed when combined with mei9 and mei41 (1981, Mutat. Res. 83: 191-200). All classes of chromosome rearrangements produced by dysgenic progeny, but with preferential points of breakage (Yannopoulos, Stamatis, Zacharopoulou, and Pelecanos, 1983, Mutat. Res. 108: 185-202); also shown in some cases to promote gonadal aplasia, especially at higher temperatures (Stamatis, Yannopoulos, and Pelecanos, 1981, Genet. Res. 38: 125-35); metaphase I of meiosis normal, but bridges and fragments observed in anaphase I and anaphase II in dysgenic males (Henderson, Woodruff and Thompson, 1973, Genetics 88: 93-107; Yannopoulos, 1978, Genet. Res. 239-47). Gross deletion of X-chromosome material induced by MR shown to involve an array of breakpoints, which, by in situ hybridization, are free of P-element sequences; postulated to arise through illegimate mitotic exchange (Green, Yamamoto, and Miklos, 1987, Proc. Nat. Acad. Sci. USA 84: 4533-37). The majority of the activity in several of the isolates maps to a site between Tft and pr on the left arm of chromosome two, but when that site removed residual activity remains in the genome. Mappability of the major effect to the same site in independent isolates suggests the presence of an element that is able to promote transposition but that itself is unable to transpose. Circumstantial evidence indicates that the element is P and that in addition to a functional P element, MR second chromosomes also carry defective P's. Males inheriting two doses of MR from mei-S332 fathers crossed to C(2)EN/0 females not discernably different from males with one dose; two doses of MR inherited from the mother are inactive (Green and Slatko, 1979, Mutat. Res. 62: 529-39).
                
    
                            geographical
        isolate                origin                ref α
        ______________________________________________________
        MR-23.5       Patras, Greece                 14, 15
        MR-31.1       Patras, Greece                   14
        MR-gb39       Sonoma County, California        3
        MR-h12        Haifa, Israel               2, 3, 4, 9
        MR-n1         Napa County, California       3, 4, 5
        MR-OK1        Oklahoma City, Oklahoma        7, 13
        MR-S90 β      Northern California              1
        MR-T007       Harlingen, Texas            6, 8, 10, 11
        MR-WO         Ohio?                            12
    α
      1 = Bencze and Slatko, 1984, Genet. Res. 43:  149-58;
      2 = Green, 1977, Proc. Nat. Acad. Sci. USA 74:  3490-94;
      3 = Green, 1984, Biol. Zentralbl. 103:  1-8; 4 = Green and
      Shepherd, 1979, Genetics 92:  823-32; 5 = Green and Slatko,
      1979, Mutat. Res. 62:  529-31; 6 = Hiraizumi, 1971, Proc.
      Nat. Acad. Sci. USA 68:  268-70; 7 = Henderson, Woodruff,
      and Thompson, 1978, Genetics 88:  93-107; 8 = Hiraizumi,
      Slatko, Langley, and Nill, 1973, Genetics 73:  439-44;
      9 = Sinclair and Green, 1979, Molec. Gen. Genet. 170: 219-
      24; 10 = Slatko, 1978, Genetics 90:  105-24; 257-76;
      11 = Slatko and Hiraizumi, 1973, Genetics: 75:  643-49;
      12 = Waddle and Oster, 1974, J. Genet. 61:  177-83;
      13 = Woodruff and Thompson, 1977, Heredity 38:  291-307;
      14 = Yannopoulos and Pelecanos, 1977, Genet. Res. 29:  231-
      38; 15 = Yannopoulos, Stamatis, Zacharapolou, and Pelecanos,
      1983, Mutat. Res. 108:  185-202.
    β
      Also carries Sd.
    
    
            
    Gene Model and Products
    Number of Transcripts
    0
    Number of Unique Polypeptides
    0
    Protein Domains (via Pfam)
    Isoform displayed:
    Pfam protein domains
    InterPro name
    classification
    start
    end
    Protein Domains (via SMART)
    Isoform displayed:
    SMART protein domains
    InterPro name
    classification
    start
    end
    Structure
    Experimentally Determined Structures
    Crossreferences
    Comments on Gene Model
    Transcript Data
    Annotated Transcripts
    Additional Transcript Data and Comments
    Reported size (kB)
    Comments
    External Data
    Crossreferences
    Polypeptide Data
    Annotated Polypeptides
    Polypeptides with Identical Sequences

     

    Additional Polypeptide Data and Comments
    Reported size (kDa)
    Comments
    External Data
    Crossreferences
    Linkouts
    Sequences Consistent with the Gene Model
    Nucleotide / Polypeptide Records
      Mapped Features

      Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\MRF using the Feature Mapper tool.

      External Data
      Crossreferences
      Linkouts
      Expression Data
      Testis-specificity index

      The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).

      NA

      Transcript Expression
      Additional Descriptive Data
      Marker for
       
      Subcellular Localization
      CV Term
      Polypeptide Expression
      Additional Descriptive Data
      Marker for
       
      Subcellular Localization
      CV Term
      Evidence
      References
      Expression Deduced from Reporters
      High-Throughput Expression Data
      Associated Tools

      JBrowse - Visual display of RNA-Seq signals

      View Dmel\MRF in JBrowse
      RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
      Reference
      See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
      Developmental Proteome: Life Cycle
      Developmental Proteome: Embryogenesis
      External Data and Images
      Alleles, Insertions, Transgenic Constructs, and Aberrations
      Classical and Insertion Alleles ( 10 )
      For All Classical and Insertion Alleles Show
       
      Other relevant insertions
      Transgenic Constructs ( 0 )
      For All Alleles Carried on Transgenic Constructs Show
      Transgenic constructs containing/affecting coding region of MRF
      Transgenic constructs containing regulatory region of MRF
      Aberrations (Deficiencies and Duplications) ( 0 )
      Inferred from experimentation ( 0 )
      Inferred from location ( 0 )
        Variants
        Variant Molecular Consequences
        Alleles Representing Disease-Implicated Variants
        Phenotypes
        For more details about a specific phenotype click on the relevant allele symbol.
        Phenotype manifest in
        Allele
        Orthologs
        Human Orthologs (via DIOPT v9.1)
        Species\Gene Symbol
        Score
        Best Score
        Best Reverse Score
        Alignment
        Complementation?
        Transgene?
        Homo sapiens (Human) (0)
        Model Organism Orthologs (via DIOPT v9.1)
        Species\Gene Symbol
        Score
        Best Score
        Best Reverse Score
        Alignment
        Complementation?
        Transgene?
        Rattus norvegicus (Norway rat) (0)
        Mus musculus (laboratory mouse) (0)
        Xenopus tropicalis (Western clawed frog) (0)
        Danio rerio (Zebrafish) (0)
        Caenorhabditis elegans (Nematode, roundworm) (0)
        Anopheles gambiae (African malaria mosquito) (0)
        Arabidopsis thaliana (thale-cress) (0)
        Saccharomyces cerevisiae (Brewer's yeast) (0)
        Schizosaccharomyces pombe (Fission yeast) (0)
        Escherichia coli (enterobacterium) (0)
        Other Organism Orthologs (via OrthoDB)
        Data provided directly from OrthoDB:MRF. Refer to their site for version information.
        Paralogs
        Paralogs (via DIOPT v9.1)
        Human Disease Associations
        FlyBase Human Disease Model Reports
          Disease Ontology (DO) Annotations
          Models Based on Experimental Evidence ( 0 )
          Allele
          Disease
          Evidence
          References
          Potential Models Based on Orthology ( 0 )
          Human Ortholog
          Disease
          Evidence
          References
          Modifiers Based on Experimental Evidence ( 0 )
          Allele
          Disease
          Interaction
          References
          Disease Associations of Human Orthologs (via DIOPT v9.1 and OMIM)
          Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
          Homo sapiens (Human)
          Gene name
          Score
          OMIM
          OMIM Phenotype
          DO term
          Complementation?
          Transgene?
          Functional Complementation Data
          Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
          Interactions
          Summary of Physical Interactions
          esyN Network Diagram
          Other Interaction Browsers
          Summary of Genetic Interactions
          esyN Network Diagram
          Other Interaction Browsers
          Starting gene(s)
          Interaction type
          Interacting gene(s)
          Reference
          Starting gene(s)
          Interaction type
          Interacting gene(s)
          Reference
          External Data
          Linkouts
          Pathways
          Signaling Pathways (FlyBase)
          Metabolic Pathways
          FlyBase
          External Links
          External Data
          Linkouts
          Class of Gene
          Genomic Location and Detailed Mapping Data
          Chromosome (arm)
          Recombination map
          2-54
          Cytogenetic map
          Sequence location
          FlyBase Computed Cytological Location
          Cytogenetic map
          Evidence for location
          Experimentally Determined Cytological Location
          Cytogenetic map
          Notes
          References
          Experimentally Determined Recombination Data
          Location
          Notes

          2/10 amos-pr crossovers between amos and MR.

          Stocks and Reagents
          Stocks (3)
          Genomic Clones (0)
           
            cDNA Clones (0)
             

            Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.

            cDNA clones, fully sequenced
            BDGP DGC clones
              Other clones
                Drosophila Genomics Resource Center cDNA clones

                For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

                  cDNA Clones, End Sequenced (ESTs)
                  BDGP DGC clones
                    Other clones
                      RNAi and Array Information
                      Linkouts
                      Antibody Information
                      Laboratory Generated Antibodies
                       
                      Commercially Available Antibodies
                       
                      Cell Line Information
                      Publicly Available Cell Lines
                       
                        Other Stable Cell Lines
                         
                          Other Comments

                          In Eurasian populations collected in 1977-1992 between 18 and 40% of second chromosomes show MR activity.

                          A series of second chromosomes isolated from natural populations in diverse regions of the globe that, in crosses of MR-bearing males to laboratory-strain females, but not in the reciprocal crosses, produce dysgenic progeny. The majority of the activity in several of the isolates maps to a site between amos and pr on the left arm of chromosome two, but when that site removed residual activity remains in the genome. Mappability of the major effect to the same site in independent isolates suggests the presence of an element that is able to promote transposition but that itself is unable to transpose. Circumstantial evidence indicates that the element is P and that in addition to a functional P element, MR second chromosomes also carry defective P's. Males inheriting two doses of MR from mei-S332 fathers crossed to C(2)EN/0 females not discernibly different from males with one dose.

                          Gross deletion of X-chromosome material induced by MR shown to involve an array of breakpoints, which, by in situ hybridization, are free of P-element sequences; postulated to arise through illegitimate mitotic exchange.

                          All classes of chromosome rearrangements produced by dysgenic progeny, but with preferential points of breakage.

                          Increased mutation rates observed when combined with mei-9 and mei-41.

                          Such progeny transmit the MR chromosome at reduced levels compared with the homologous second chromosome; abnormalities in spermiogenesis including failure of individualization observed in dysgenic males account for 70% of the deficiency in recovery of MR.

                          Shown in some cases to promote gonadal aplasia, especially at higher temperatures.

                          Two doses of MR inherited from the mother are inactive.

                          Increased levels of gonial recombination observed in daughters (demonstrated in c(3)G females).

                          Mitotic crossing over in wing discs unaffected.

                          Metaphase I of meiosis normal, but bridges and fragments observed in anaphase I and anaphase II in dysgenic males.

                          Both sons and daughters exhibit increased rates of spontaneous mutations, both lethal and at some but not all specific loci the latter types of mutants usually unstable, undergoing further mutation either to more extreme alleles or back to wild type.

                          Increased levels of gonial recombination observed in sons.

                          Relationship to Other Genes
                          Source for database merge of
                          Additional comments
                          Nomenclature History
                          Source for database identify of

                          Source for identity of: MRF MR

                          Nomenclature comments

                          The gene symbol "MR" has been changed to "MRF" in order to reduce confusion with the "mr" ("morula") gene symbol, from which it differed only by case.

                          Etymology
                          Synonyms and Secondary IDs (5)
                          Reported As
                          Name Synonyms
                          Male Recombination
                          Male recombination factor
                          Mister
                          Secondary FlyBase IDs
                            Datasets (0)
                            Study focus (0)
                            Experimental Role
                            Project
                            Project Type
                            Title
                            Study result (0)
                            Result
                            Result Type
                            Title
                            External Crossreferences and Linkouts ( 0 )
                            References (35)