A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Gene Dmel\mus301

General Information
SymbolDmel\mus301SpeciesD. melanogaster
Namemutagen-sensitive 301Annotation symbolCG7972
Feature typeprotein_coding_geneFlyBase IDFBgn0002899
Gene Model StatusCurrent Stock availability 10 publicly available
Also Known Asspn-C, spnC
Genomic Location
Chromosome (arm)3LRecombination map3-23
Cytogenetic map66B8-66B8Sequence location3L:8,130,914..8,135,114 [+]

Genomic Maps

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Automatically generated summary

See sections below for more information
The gene mutagen-sensitive 301 is referred to in FlyBase by the symbol Dmel\mus301 (CG7972, FBgn0002899). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: helicase activity. There is experimental evidence that it is involved in the biological process: female meiosis chromosome segregation; germarium-derived oocyte fate determination; polarity specification of dorsal/ventral axis; intracellular mRNA localization; oogenesis; polarity specification of anterior/posterior axis; karyosome formation. 21 alleles are reported. The phenotypes of these alleles are annotated with: germline cyst; oocyte; karyosome; egg chamber; oocyte nucleus; dorsal appendage; nurse cell; synaptonemal complex. It has one annotated transcript and one annotated polypeptide. Protein features are: DEAD-like helicase; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of very low expression. Peak expression observed within 00-06 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult ovary. Comments on Affy2 ProbeSet: ProbeSet 1638294_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of mus301. Gene sequence location is 3L:8130914..8135114.

hide Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
Gene/Allele symbols may differ from current usage
mus301 (J.B. Boyd)
Larval survival hypersensitive to exposure to X rays (Oliveri, Harris, and Boyd, 1990, Mutat. Res. 235: 25-31), methyl methanesulfonate, and nitrogen mustard. When fertile, homozygous females exhibit elevated frequencies of nondisjunction.
spn-C: spindle C
Maternal-effect lethal. Similar to spn-A.
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
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FB2012_01
Sequence features
FB2011_10
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
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FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
66B8-66B8  
Limits computationally determined from genome sequence between P{PZ}l(3)0721708223&P{EP}Rac2EP3118 and P{lacW}Nmtj1C7  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\mus301 for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0273367 FBtr0273368 FBtr0076689 FBtr0076732 FBpp0271875 FBpp0271876 FBpp0076412 FBpp0076455 FBti0052340 FBti0125564_1 FBti0058064 FBti0125564_2 FBti0033754 FBti0044036 FBti0125565_2 FBti0125565_1 FBti0040315
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0076689
  3358
  1051
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0076412  
117.3  
1051  
6.30  
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hidePolypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hide High-Throughput Expression Data
or
Untitled Document detailed view CG7504-RB CG7504-RC mus301-RA CG13676-RA
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

modENCODE Temporal Expression Data for FBgn0002899


   Styles
Linear
Logarithmic
Heatmap
   Scales
max expr for FBgn0002899
Very low expression bin max
Moderate expression bin max
High expression bin max
Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of very low expression. Peak expression observed within 00-06 hour embryonic stages.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No expression (0 - 0)
 
Extremely low expression (1 - 10)
 
Very low expression (11 - 100)
 
Low expression (101 - 400)
 
Moderate expression (401 - 1400)
 
Moderately high expression (1401 - 4000)
 
High expression (4001 - 10000)
 
Very high expression (10001 - 100000)
 
Extremely high expression (100001 - 2000000)

Linear, scaled to maximum FBgn0002899 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 1925
embryo 02-04hr
 
 144
embryo 04-06hr
 
 192
embryo 06-08hr
 
 386
embryo 08-10hr
 
 289
embryo 10-12hr
 
 168
embryo 12-14hr
 
 84
embryo 14-16hr
 
 72
embryo 16-18hr
 
 77
embryo 18-20hr
 
 34
embryo 20-22hr
 
 24
embryo 22-24hr
 
 28
larva L1
 
 95
larva L2
 
 174
larva L3 12hr old
 
 131
larva L3 puffstage 1-2
 
 149
larva L3 puffstage 3-6
 
 181
larva L3 puffstage 7-9
 
 211
white prepupae new
 
 198
white prepupae 12hr
 
 269
white prepupae 24hr
 
 203
pupae 2d postWPP
 
 81
pupae 3d postWPP
 
 50
pupae 4d postWPP
 
 70
adult male 01day
 
 77
adult male 05day
 
 102
adult male 30day
 
 105
adult female 01day
 
 457
adult female 05day
 
 1253
adult female 30day
 
 1228
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (1925)
embryo 02-04hr
 (144)
embryo 04-06hr
 (192)
embryo 06-08hr
 (386)
embryo 08-10hr
 (289)
embryo 10-12hr
 (168)
embryo 12-14hr
 
 84
embryo 14-16hr
 
 72
embryo 16-18hr
 
 77
embryo 18-20hr
 
 34
embryo 20-22hr
 
 24
embryo 22-24hr
 
 28
larva L1
 
 95
larva L2
 (174)
larva L3 12hr old
 (131)
larva L3 puffstage 1-2
 (149)
larva L3 puffstage 3-6
 (181)
larva L3 puffstage 7-9
 (211)
white prepupae new
 (198)
white prepupae 12hr
 (269)
white prepupae 24hr
 (203)
pupae 2d postWPP
 
 81
pupae 3d postWPP
 
 50
pupae 4d postWPP
 
 70
adult male 01day
 
 77
adult male 05day
 102
adult male 30day
 105
adult female 01day
 (457)
adult female 05day
 (1253)
adult female 30day
 (1228)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (1925)
embryo 02-04hr
 
 144
embryo 04-06hr
 
 192
embryo 06-08hr
 
 386
embryo 08-10hr
 
 289
embryo 10-12hr
 
 168
embryo 12-14hr
 
 84
embryo 14-16hr
 
 72
embryo 16-18hr
 
 77
embryo 18-20hr
 
 34
embryo 20-22hr
 
 24
embryo 22-24hr
 
 28
larva L1
 
 95
larva L2
 
 174
larva L3 12hr old
 
 131
larva L3 puffstage 1-2
 
 149
larva L3 puffstage 3-6
 
 181
larva L3 puffstage 7-9
 
 211
white prepupae new
 
 198
white prepupae 12hr
 
 269
white prepupae 24hr
 
 203
pupae 2d postWPP
 
 81
pupae 3d postWPP
 
 50
pupae 4d postWPP
 
 70
adult male 01day
 
 77
adult male 05day
 
 102
adult male 30day
 
 105
adult female 01day
 
 457
adult female 05day
 
 1253
adult female 30day
 
 1228
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 1925
embryo 02-04hr
 
 144
embryo 04-06hr
 
 192
embryo 06-08hr
 
 386
embryo 08-10hr
 
 289
embryo 10-12hr
 
 168
embryo 12-14hr
 
 84
embryo 14-16hr
 
 72
embryo 16-18hr
 
 77
embryo 18-20hr
 
 34
embryo 20-22hr
 
 24
embryo 22-24hr
 
 28
larva L1
 
 95
larva L2
 
 174
larva L3 12hr old
 
 131
larva L3 puffstage 1-2
 
 149
larva L3 puffstage 3-6
 
 181
larva L3 puffstage 7-9
 
 211
white prepupae new
 
 198
white prepupae 12hr
 
 269
white prepupae 24hr
 
 203
pupae 2d postWPP
 
 81
pupae 3d postWPP
 
 50
pupae 4d postWPP
 
 70
adult male 01day
 
 77
adult male 05day
 
 102
adult male 30day
 
 105
adult female 01day
 
 457
adult female 05day
 
 1253
adult female 30day
 
 1228
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 1925
embryo 02-04hr
 
 144
embryo 04-06hr
 
 192
embryo 06-08hr
 
 386
embryo 08-10hr
 
 289
embryo 10-12hr
 
 168
embryo 12-14hr
 
 84
embryo 14-16hr
 
 72
embryo 16-18hr
 
 77
embryo 18-20hr
 
 34
embryo 20-22hr
 
 24
embryo 22-24hr
 
 28
larva L1
 
 95
larva L2
 
 174
larva L3 12hr old
 
 131
larva L3 puffstage 1-2
 
 149
larva L3 puffstage 3-6
 
 181
larva L3 puffstage 7-9
 
 211
white prepupae new
 
 198
white prepupae 12hr
 
 269
white prepupae 24hr
 
 203
pupae 2d postWPP
 
 81
pupae 3d postWPP
 
 50
pupae 4d postWPP
 
 70
adult male 01day
 
 77
adult male 05day
 
 102
adult male 30day
 
 105
adult female 01day
 
 457
adult female 05day
 
 1253
adult female 30day
 
 1228
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to maximum FBgn0002899 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 1925
embryo 02-04hr
 
 144
embryo 04-06hr
 
 192
embryo 06-08hr
 
 386
embryo 08-10hr
 
 289
embryo 10-12hr
 
 168
embryo 12-14hr
 
 84
embryo 14-16hr
 
 72
embryo 16-18hr
 
 77
embryo 18-20hr
 
 34
embryo 20-22hr
 
 24
embryo 22-24hr
 
 28
larva L1
 
 95
larva L2
 
 174
larva L3 12hr old
 
 131
larva L3 puffstage 1-2
 
 149
larva L3 puffstage 3-6
 
 181
larva L3 puffstage 7-9
 
 211
white prepupae new
 
 198
white prepupae 12hr
 
 269
white prepupae 24hr
 
 203
pupae 2d postWPP
 
 81
pupae 3d postWPP
 
 50
pupae 4d postWPP
 
 70
adult male 01day
 
 77
adult male 05day
 
 102
adult male 30day
 
 105
adult female 01day
 
 457
adult female 05day
 
 1253
adult female 30day
 
 1228
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
log, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (1925)
embryo 02-04hr
 (144)
embryo 04-06hr
 (192)
embryo 06-08hr
 (386)
embryo 08-10hr
 (289)
embryo 10-12hr
 (168)
embryo 12-14hr
 
 84
embryo 14-16hr
 
 72
embryo 16-18hr
 
 77
embryo 18-20hr
 
 34
embryo 20-22hr
 
 24
embryo 22-24hr
 
 28
larva L1
 
 95
larva L2
 (174)
larva L3 12hr old
 131
larva L3 puffstage 1-2
 (149)
larva L3 puffstage 3-6
 (181)
larva L3 puffstage 7-9
 (211)
white prepupae new
 (198)
white prepupae 12hr
 (269)
white prepupae 24hr
 (203)
pupae 2d postWPP
 
 81
pupae 3d postWPP
 
 50
pupae 4d postWPP
 
 70
adult male 01day
 
 77
adult male 05day
 102
adult male 30day
 105
adult female 01day
 (457)
adult female 05day
 (1253)
adult female 30day
 (1228)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 1925
embryo 02-04hr
 
 144
embryo 04-06hr
 
 192
embryo 06-08hr
 
 386
embryo 08-10hr
 
 289
embryo 10-12hr
 
 168
embryo 12-14hr
 
 84
embryo 14-16hr
 
 72
embryo 16-18hr
 
 77
embryo 18-20hr
 
 34
embryo 20-22hr
 
 24
embryo 22-24hr
 
 28
larva L1
 
 95
larva L2
 
 174
larva L3 12hr old
 
 131
larva L3 puffstage 1-2
 
 149
larva L3 puffstage 3-6
 
 181
larva L3 puffstage 7-9
 
 211
white prepupae new
 
 198
white prepupae 12hr
 
 269
white prepupae 24hr
 
 203
pupae 2d postWPP
 
 81
pupae 3d postWPP
 
 50
pupae 4d postWPP
 
 70
adult male 01day
 
 77
adult male 05day
 
 102
adult male 30day
 
 105
adult female 01day
 
 457
adult female 05day
 
 1253
adult female 30day
 
 1228
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 1925
embryo 02-04hr
 
 144
embryo 04-06hr
 
 192
embryo 06-08hr
 
 386
embryo 08-10hr
 
 289
embryo 10-12hr
 
 168
embryo 12-14hr
 
 84
embryo 14-16hr
 
 72
embryo 16-18hr
 
 77
embryo 18-20hr
 
 34
embryo 20-22hr
 
 24
embryo 22-24hr
 
 28
larva L1
 
 95
larva L2
 
 174
larva L3 12hr old
 
 131
larva L3 puffstage 1-2
 
 149
larva L3 puffstage 3-6
 
 181
larva L3 puffstage 7-9
 
 211
white prepupae new
 
 198
white prepupae 12hr
 
 269
white prepupae 24hr
 
 203
pupae 2d postWPP
 
 81
pupae 3d postWPP
 
 50
pupae 4d postWPP
 
 70
adult male 01day
 
 77
adult male 05day
 
 102
adult male 30day
 
 105
adult female 01day
 
 457
adult female 05day
 
 1253
adult female 30day
 
 1228
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 1925
embryo 02-04hr
 
 144
embryo 04-06hr
 
 192
embryo 06-08hr
 
 386
embryo 08-10hr
 
 289
embryo 10-12hr
 
 168
embryo 12-14hr
 
 84
embryo 14-16hr
 
 72
embryo 16-18hr
 
 77
embryo 18-20hr
 
 34
embryo 20-22hr
 
 24
embryo 22-24hr
 
 28
larva L1
 
 95
larva L2
 
 174
larva L3 12hr old
 
 131
larva L3 puffstage 1-2
 
 149
larva L3 puffstage 3-6
 
 181
larva L3 puffstage 7-9
 
 211
white prepupae new
 
 198
white prepupae 12hr
 
 269
white prepupae 24hr
 
 203
pupae 2d postWPP
 
 81
pupae 3d postWPP
 
 50
pupae 4d postWPP
 
 70
adult male 01day
 
 77
adult male 05day
 
 102
adult male 30day
 
 105
adult female 01day
 
 457
adult female 05day
 
 1253
adult female 30day
 
 1228
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

FlyAtlas Anatomical Expression Data for FBgn0002899


   Styles
Linear
Logarithmic
Heatmap
Back-to-back
   Scales
max expr for FBgn0002899
Moderate expression bin max
High level expression bin max
Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult ovary.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (1000 - 25000)

Linear, scaled to maximum FBgn0002899 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 60.15
Larval Midgut no informative data
Larval Hindgut no informative data
Larval Malpighian Tubules
 
 22.5
Larval Fat Body no informative data
Larval Salivary Gland no informative data
Larval Trachea no informative data
Larval Carcass no informative data
Adult Head no informative data
Adult Eye
 
 3.825
Adult Brain no informative data
Adult Thoracic-Abdominal Ganglion no informative data
Adult Crop no informative data
Adult Midgut no informative data
Adult Hindgut no informative data
Adult Malpighian Tubules no informative data
Adult Fat Body no informative data
Adult Salivary Gland no informative data
Adult Heart
 
 4.275
Adult VirginFemale Spermatheca no informative data
Adult InseminatedFemale Spermatheca no informative data
Adult Ovary
 
 166.2
Adult Testis
 
 55.1
Adult Male Accessory Gland no informative data
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 60.15
Larval Midgut no informative data
Larval Hindgut no informative data
Larval Malpighian Tubules
 
 22.5
Larval Fat Body no informative data
Larval Salivary Gland no informative data
Larval Trachea no informative data
Larval Carcass no informative data
Adult Head no informative data
Adult Eye
 
 3.825
Adult Brain no informative data
Adult Thoracic-Abdominal Ganglion no informative data
Adult Crop no informative data
Adult Midgut no informative data
Adult Hindgut no informative data
Adult Malpighian Tubules no informative data
Adult Fat Body no informative data
Adult Salivary Gland no informative data
Adult Heart
 
 4.275
Adult VirginFemale Spermatheca no informative data
Adult InseminatedFemale Spermatheca no informative data
Adult Ovary
 
 166.2
Adult Testis
 
 55.1
Adult Male Accessory Gland no informative data
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 60.15
Larval Midgut no informative data
Larval Hindgut no informative data
Larval Malpighian Tubules
 
 22.5
Larval Fat Body no informative data
Larval Salivary Gland no informative data
Larval Trachea no informative data
Larval Carcass no informative data
Adult Head no informative data
Adult Eye
 
 3.825
Adult Brain no informative data
Adult Thoracic-Abdominal Ganglion no informative data
Adult Crop no informative data
Adult Midgut no informative data
Adult Hindgut no informative data
Adult Malpighian Tubules no informative data
Adult Fat Body no informative data
Adult Salivary Gland no informative data
Adult Heart
 
 4.275
Adult VirginFemale Spermatheca no informative data
Adult InseminatedFemale Spermatheca no informative data
Adult Ovary
 
 166.2
Adult Testis
 
 55.1
Adult Male Accessory Gland no informative data
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 60.15
Larval Midgut no informative data
Larval Hindgut no informative data
Larval Malpighian Tubules
 
 22.5
Larval Fat Body no informative data
Larval Salivary Gland no informative data
Larval Trachea no informative data
Larval Carcass no informative data
Adult Head no informative data
Adult Eye
 
 3.825
Adult Brain no informative data
Adult Thoracic-Abdominal Ganglion no informative data
Adult Crop no informative data
Adult Midgut no informative data
Adult Hindgut no informative data
Adult Malpighian Tubules no informative data
Adult Fat Body no informative data
Adult Salivary Gland no informative data
Adult Heart
 
 4.275
Adult VirginFemale Spermatheca no informative data
Adult InseminatedFemale Spermatheca no informative data
Adult Ovary
 
 166.2
Adult Testis
 
 55.1
Adult Male Accessory Gland no informative data
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to maximum FBgn0002899 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 60.15
Larval Midgut no informative data
Larval Hindgut no informative data
Larval Malpighian Tubules
 
 22.5
Larval Fat Body no informative data
Larval Salivary Gland no informative data
Larval Trachea no informative data
Larval Carcass no informative data
Adult Head no informative data
Adult Eye
 
 3.825
Adult Brain no informative data
Adult Thoracic-Abdominal Ganglion no informative data
Adult Crop no informative data
Adult Midgut no informative data
Adult Hindgut no informative data
Adult Malpighian Tubules no informative data
Adult Fat Body no informative data
Adult Salivary Gland no informative data
Adult Heart
 
 4.275
Adult VirginFemale Spermatheca no informative data
Adult InseminatedFemale Spermatheca no informative data
Adult Ovary
 
 166.2
Adult Testis
 
 55.1
Adult Male Accessory Gland no informative data
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 60.15
Larval Midgut no informative data
Larval Hindgut no informative data
Larval Malpighian Tubules
 
 22.5
Larval Fat Body no informative data
Larval Salivary Gland no informative data
Larval Trachea no informative data
Larval Carcass no informative data
Adult Head no informative data
Adult Eye
 
 3.825
Adult Brain no informative data
Adult Thoracic-Abdominal Ganglion no informative data
Adult Crop no informative data
Adult Midgut no informative data
Adult Hindgut no informative data
Adult Malpighian Tubules no informative data
Adult Fat Body no informative data
Adult Salivary Gland no informative data
Adult Heart
 
 4.275
Adult VirginFemale Spermatheca no informative data
Adult InseminatedFemale Spermatheca no informative data
Adult Ovary
 
 166.2
Adult Testis
 
 55.1
Adult Male Accessory Gland no informative data
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 60.15
Larval Midgut no informative data
Larval Hindgut no informative data
Larval Malpighian Tubules
 
 22.5
Larval Fat Body no informative data
Larval Salivary Gland no informative data
Larval Trachea no informative data
Larval Carcass no informative data
Adult Head no informative data
Adult Eye
 
 3.825
Adult Brain no informative data
Adult Thoracic-Abdominal Ganglion no informative data
Adult Crop no informative data
Adult Midgut no informative data
Adult Hindgut no informative data
Adult Malpighian Tubules no informative data
Adult Fat Body no informative data
Adult Salivary Gland no informative data
Adult Heart
 
 4.275
Adult VirginFemale Spermatheca no informative data
Adult InseminatedFemale Spermatheca no informative data
Adult Ovary
 
 166.2
Adult Testis
 
 55.1
Adult Male Accessory Gland no informative data
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 60.15
Larval Midgut no informative data
Larval Hindgut no informative data
Larval Malpighian Tubules
 
 22.5
Larval Fat Body no informative data
Larval Salivary Gland no informative data
Larval Trachea no informative data
Larval Carcass no informative data
Adult Head no informative data
Adult Eye
 
 3.825
Adult Brain no informative data
Adult Thoracic-Abdominal Ganglion no informative data
Adult Crop no informative data
Adult Midgut no informative data
Adult Hindgut no informative data
Adult Malpighian Tubules no informative data
Adult Fat Body no informative data
Adult Salivary Gland no informative data
Adult Heart
 
 4.275
Adult VirginFemale Spermatheca no informative data
Adult InseminatedFemale Spermatheca no informative data
Adult Ovary
 
 166.2
Adult Testis
 
 55.1
Adult Male Accessory Gland no informative data
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut no informative data
Larval Hindgut no informative data
Larval Malpighian Tubules
 
 
Larval Fat Body no informative data
Larval Salivary Gland no informative data
Larval Trachea no informative data
Larval Carcass no informative data
Adult Head no informative data
Adult Eye
 
 
Adult Brain no informative data
Adult Thoracic-Abdominal Ganglion no informative data
Adult Crop no informative data
Adult Midgut no informative data
Adult Hindgut no informative data
Adult Malpighian Tubules no informative data
Adult Fat Body no informative data
Adult Salivary Gland no informative data
Adult Heart
 
 
Adult VirginFemale Spermatheca no informative data
Adult InseminatedFemale Spermatheca no informative data
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland no informative data
Adult Carcass no informative data

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 no informative data
 
NA 
Eye
 
 3.825
 
NA 
Brain
 
 no informative data
 
60.15 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 no informative data
 
NA 
Crop
 
 no informative data
 
no informative data 
Midgut
 
 no informative data
 
no informative data 
Hindgut
 
 no informative data
 
22.5 
Malpighian Tubules
 
 no informative data
 
no informative data 
Fat Body
 
 no informative data
 
no informative data 
Salivary Gland
 
 no informative data
 
NA 
Heart
 
 4.275
 
no informative data 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 no informative data
 
NA 
InseminatedFemale Spermatheca
 
 no informative data
 
NA 
Ovary
 
 166.2
 
NA 
Testis
 
 55.1
 
NA 
Male Accessory Gland
 
 no informative data
 
no informative data 
Carcass
 
 no informative data

modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
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FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
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Allele
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Allele
hide Classical Alleles ( 19 )
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Allele of mus301ClassMutagenStocksKnown lesion
mus301D12 --
mus301D42 --
mus301660antimorphic allele - genetic evidence, amorphic allele - genetic evidence1 Yes
mus301c022711 --
mus301D21 --
mus301D31 --
mus301KG090981 Yes
mus301094antimorphic allele - genetic evidence, amorphic allele - genetic evidence0 Yes
mus301422antimorphic allele - genetic evidence, amorphic allele - genetic evidence0 Yes
mus301D50 --
mus301unspecified
0 --
mus301ZIII-22050 --
mus301ZIII-22550 Yes
mus301ZIII-31980 Yes
mus301ZIII-38650 --
mus301ZIII-48750 Yes
mus301ZIII-51210 --
mus301ZIII-58130 --
mus301ZIII-60300 --
hide Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show

Allele of mus301ClassMutagenStocksKnown lesion
mus301GD123361 Yes
mus301+t6.20 Yes
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Disrupted in
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Transgenic Constructs
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Type of insertions
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hide Gene Ontology: Function, Process & Cellular Component ( 15 unique terms )
hide Terms Based on Experimental Evidence ( 7 terms )
Molecular Function ( 0 terms)
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CV term
References
inferred from genetic interaction with spn-A
inferred from mutant phenotype
inferred from genetic interaction with fs(1)K10
Cellular Component ( 0 terms)
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inferred from sequence or structural similarity
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non-traceable author statement
traceable author statement
Cellular Component
CV term
References
inferred from sequence or structural similarity with EMBL:Z70200
inferred from sequence or structural similarity with EMBL:Z70200
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Interacts with
Please look at the allele data for full details of the genetic interactions
mus301 allele
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InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
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Genome-wide drosophilid orthologs
Curated drosophilid orthologs
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hide Stocks Listed in FlyBase ( 10 )
Bloomington
Harvard
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VDRC
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Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
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cDNA Clones, End Sequenced (ESTs)
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DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
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Source for database identity of
Source for database merge of
Source for merge of: mus301 anon-WO0118547.354
Source for merge of: mus301 CG7972
Source for merge of: mus301 spn-C
Additional comments
Source for merge of mus301 anon-WO0118547.354 was sequence comparison (date:051113).
hide Other Comments
mus301 is involved in chromosome segregation in meiosis and in the repair of double-strand-DNA breaks in both meiotic and mitotic cells.
Area matching Drosophila EST AI518328.
Analysis of mutants of the 5 spindle genes (spn-A, spn-B, mus301, spn-D and spn-E) reveals that the group of genes is required for each of the symmetry-breaking steps that generate polarity during axis formation. spn-E is required for the localisation of fs(1)K10, bcd and osk mRNAs, spn-A. spn-B, mus301 and spn-D play an indirect role in this process.
Analysis of egg chambers in mus301 mutants led to the conclusion that AP polarity within the oocyte is defined by the position of the oocyte in the egg chamber.
Larval survival hypersensitive to exposure to X rays (Oliveri, Harris and Boyd, 1990), methyl methanesulfonate and nitrogen mustard. When fertile, homozygous females exhibit elevated frequencies of nondisjunction.
 
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Linkouts
BioGRID - A database of protein and genetic interactions
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InParanoid A subset of ortholog calls from InParanoid.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Synonyms & Secondary IDs ( 12 )
Reported As
Symbol Synonym
anon-WO0118547.354
 
cg7972
Name Synonym
mutagen-sensitive 301
 
spindel
spindle C
 
Secondary FlyBase IDs
  • FBgn0003481
  • FBgn0035843
  • FBgn0062073
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