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Gene Dmel\sta

General Information
Symbol	Dmel\sta	Species	D. melanogaster
Name	stubarista	Annotation symbol	CG14792
Feature type	protein_coding_gene	FlyBase ID	FBgn0003517
Gene Model Status	Current	Stock availability	11 publicly available
Also Known As	RpSA, P40, EG:80H7.6, l(1)G0130
Genomic Location
Chromosome (arm)	X	Recombination map
Cytogenetic map	2B1-2B1	Sequence location	X:1,375,830..1,377,446 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene stubarista is referred to in FlyBase by the symbol Dmel\sta (CG14792, FBgn0003517). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: structural constituent of ribosome; ribosome binding. There is experimental evidence that it is involved in the biological process: mitotic spindle elongation; mitotic spindle organization. 30 alleles are reported. The phenotypes of these alleles are annotated with: embryonic/larval lymph gland; antenna; macrochaeta; anterior lymph gland pair; arista. It has 4 annotated transcripts and 4 annotated polypeptides. Protein features are: Ribosomal protein S2; Ribosomal protein S2, conserved site; Ribosomal protein S2, eukaryotic/archaeal; Ribosomal protein S2, flavodoxin-like domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of very high expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, during early pupal stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: High levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1638847_s_at completely aligns to an exonic region common to each of the 3 FlyBase-annotated transcript isoforms of sta. Gene sequence location is X:1375830..1377446.
User Contributed Data
	Beta version, feedback welcome
Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
Gene/Allele symbols may differ from current usage	sta: stubarista sta: stubarista From Bridges and Brehme, 1944, Carnegie Inst. Washington Publ. No. 552: 180. Third joints of antennae short, blunt, free of hairs, and yellowish. Aristae bases thickened, axes sometimes short, and branches irregular. All bristles and hairs extremely short and sparse. Eyes rotated on head slightly so that the long axis is vertical. Homozygous sta1 females unable to oviposit; stage 14 oocytes appear normal (King, 1970, Ovarian Development in Drosophila, Academic Press, New York). Lethal allele (sta2) in combination with variegating translocation (T(1;2)dorvar7) produces incised wing margins, small rough eyes with missing facets, and missing head macrochaetae [Demakova and Belyaeva, 1988, DIS 67: 21 (fig.)]. RK2A.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02	Controlled Vocabulary Terms ribosome binding 90S preribosome ribosomal small subunit assembly rRNA export from nucleus endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 2B1-2B1   Limits computationally determined from genome sequence between P{EP}futschEP1419 and P{EP}brEP1515
Experimentally Determined Cytological Location
Cytogenetic map Notes References 2B1-2B2   (determined by in situ hybridisation) 2B1--4 (determined by in situ hybridisation)   (Peter et al., 2002) 2B1-2B4   (determined by in situ hybridisation)   (Schaefer et al., 1999.12.14) 2B1-2B4   (determined by in situ hybridisation)   (Schaefer et al., 1999.6.15) 2B1-2B2   (determined by in situ hybridisation)   (Schaefer et al., 1999.3.29) 2A3-2B2   (determined by in situ hybridisation)   (Melnick et al., 1993) 2B-2B   (determined by in situ hybridisation)   (Proust et al., 1992)
Experimentally Determined Recombination Data
Location
Left of (cM)	br (Aizenzon and Belyaeva, 1982)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\sta for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Low-frequency RNA-Seq exon junction(s) not annotated. Gene model reviewed during 5.49 snoRNA:M inserted in intron.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) sta-RA FBtr0070289  NM_057402   1109   270 sta-RB FBtr0070290  NM_166889   1083   270 sta-RE FBtr0339593     1035   270 sta-RF FBtr0339594     1088   270
Additional Transcript Data & Comments
Reported size (kB)	1.0 (northern blot) (Melnick et al., 1993)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein sta-PA   FBpp0070277   30.2   270   4.50     NP_476750   AAF45638 sta-PB   FBpp0070278   30.2   270   4.50     NP_726744   AAN09049 sta-PE   FBpp0308665   30.2   270   4.50       sta-PF   FBpp0308666   30.2   270   4.50
Additional Polypeptide Data & Comments
Reported size (kDa)	270 (aa) (Melnick et al., 1993)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Ribosomal protein S2, conserved site (IPR018130) Ribosomal protein S2 (IPR001865) Ribosomal protein S2, eukaryotic/archaeal (IPR005707) Ribosomal protein S2, flavodoxin-like domain (IPR023591) Ribosomal protein S2, eukaryotic (IPR027498)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA201548   AA201783   AA202097   AA202645   AA246845   AA264522   AA390437   AA390508   AA390848   AA391267   AA392232   AA439385   AA439456   AA441048   AA694756   AA695456   AA695519   AA695585   AA695590   AA695600   AA695765   AA695875   AA696250   AA696335   AA696393   AA696410   AA696514   AA696635   AA696957   AA697921   AA735666   AA735820   AA801640   AA801790   AA801892   AA801999   AA802059   AA802185   AA802188   AA802418   AA802710   AA802740   AA802827   AA802988   AA803067   AA803168   AA803432   AA803469   AA803597   AA803660   AA803705   AA803762   AA803830   AA803841   AA804001   AA816284   AA816805   AA817059   AA817568   AA817617   AA817619   AA817658   AA820435   AA820688   AA820853   AA820957   AA820978   AA821077   AA821095   AA821105   AA821250   AA940814   AA940933   AA941386   AA941416   AA941442   AA941566   AA941748   AA942091   AA942377   AA942408   AA942413   AA942479   AA948833   AA948882   AA949852   AA950543   AA950811   AA951228   AA951358   AA951359   AA951787   AA951788   AA952092   AA952259   AA978523   AA978653   AA978661   AA979057   AA979260   AA979381   AE014298 AAF45638   AE014298 AAN09049   AF375471   AI061779   AI061783   AI062072   AI062432   AI064028   AI064531   AI107568   AI108034   AI108119   AI108192   AI108876   AI108933   AI109100   AI109526   AI109640   AI110104   AI113794   AI113823   AI113896   AI114123   AI114237   AI114287   AI124333   AI134021   AI134151   AI134586   AI134605   AI134648   AI134721   AI134936   AI135032   AI135259   AI135687   AI135834   AI135905   AI238063   AI238509   AI257137   AI257140   AI257185   AI257288   AI257389   AI257402   AI257690   AI257770   AI257974   AI258265   AI258279   AI258345   AI258611   AI258679   AI259401   AI259876   AI260070   AI260772   AI292747   AI292793   AI292949   AI295276   AI295333   AI295362   AI295626   AI295789   AI296321   AI296599   AI296699   AI386979   AI387647   AI388043   AI388217   AI388353   AI388772   AI388956   AI389373   AI389455   AI402307   AI402721   AI402843   AI402929   AI403325   AI403749   AI403837   AI404693   AI404950   AI405049   AI405883   AI406086   AI456411   AI456482   AI456647   AI456689   AI456832   AI512394   AI513049   AI513517   AI513745   AI513983   AI514085   AI514410   AI514587   AI514705   AI514821   AI515131   AI515419   AI515433   AI515937   AI516036   AI516138   AI516321   AI516530   AI516550   AI516699   AI516701   AI517213   AI518220   AI518309   AI518378   AI518621   AI518763   AI518794   AI519582   AI519589   AI519870   AI530832   AI530953   AI531137   AI531614   AI532171   AI532625   AI532718   AI532953   AI533394   AI533654   AI533726   AI533903   AI533908   AI533914   AI533956   AI534490   AI534556   AI534616   AI534984   AI541985   AI542443   AI542463   AI542850   AI543359   AI546260   AI546383   AJ300015   AJ300016   AL031027 CAA19839   AY118899 AAM50759   AY231810   AY232070   BE976196   BE976202   BF487254   BF489833   BF490781   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BX018126   BX018535   BX018801   BX018984   BX019087   BX019166   BX019220   BX019254   BX019733   BX019922   BX020438   BX020718   BX020770   BX020818   BX020827   BX021163   BX021331   BX021462   BX021571   BX021598   BX021908   BX022451   BX022896   BX022975   BX023296   BX023584   BX023643   BX023742   BX023824   BX023956   BX023999   BX024069   BX024221   BX024344   BX024652   BX024846   BX025103   BX025107   BX025450   BX025670   BX025749   BX025854   BX026481   BX026536   BX026703   BX026757   BX026808   BX026965   BX027126   BX027470   BX027638   BX028172   BX028388   BX028713   BX029447   BX029512   BX029734   BX029898   BX029906   BX030067   BX030359   BX030504   BX030674   BX030897   BX031106   BX031154   BX031303   BX031337   BX031483   BX031509   BX031717   BX031898   BX032041   BX032289   BX032547   BX032604   BX032877   BX033175   BX033376   BX033483   BX033928   BX034214   BX034339   BX034627   BX035254   BX035579   BX035677   BX035792   BX035838   BX036246   BX036415   BX036426   BX039405   BX039672   BX041241   BX041297   BX041420   BX042337   BX042358   BX042652   BX042850   BX042876   BX043330   BX043445   BX043740   BX044457   BX044495   BX044948   BX045222   BX045530   BX045707   BX045820   BX045839   BX046120   BX046217   BX047263   BX047396   BX048268   BX048319   BX048785   BX048945   BX049063   BX049219   BX049364   BX049604   BX049879   BX049918   BX051209   BX051837   BX052476   BX052551   BX052798   BX052800   BX053371   BX053432   BX053590   BX053609   BX054660   BX054928   BX055412   BX055751   BX056090   BX056116   BX056269   BX056336   BX056570   BX056716   BX057084   BX057099   BX057642   BX057689   BX057691   BX058069   BX058144   BX058273   BX058368   BX058471   BX059194   BX059202   BX059338   BX059479   BX059559   BX059650   BX060009   BX060291   BX060345   BX060566   BX060764   BX061151   BX061378   BX061395   BX061413   BX061571   BX061626   BX061698   BX061828   BX062187   BX062254   BX062722   BX063172   BX063186   BX064114   BX064449   BX064621   BX064630   BX064723   BX065339   BX065484   BX065656   BX066172   BX067075   BX067213   BX067347   BX067352   BX067522   BX068171   BX068381   BX069186   BX069252   BX069755   BX070167   BX070237   BX070261   BX070753   BX071128   BX071203   BX071531   CK131939   CK132175   CK132217   CK132222   CK132354   CK132363   CK132548   CK445247   CK570278   CK604470   CK604471   CK605098   CK658499   CK658847   CK658991   CK658994   CK659103   CK659222   CK659760   CK660037   CK660697   CK660709   CK660748   CK661125   CK661193   CK661195   CK661203   CK661329   CK661866   CK661949   CK662165   CO152751   CO152920   CO153001   CO153087   CO153182   CO153691   CO153867   CO154029   CO154111   CO155418   CO155470   CO155790   CO155983   CO156120   CO156140   CO156245   CO156534   CO156742   CO156777   CO156872   CO156972   CO177527   CO189228   CO195188   CO267531   CO271189   CO272372   CO285264   CO292628   CO295899   CO304707   CO310188   CO312371   CO335317   CO335949   CO335978   CO336010   CO336188   CO336354   CO336405   CO336546   CO336612   CO336800   CO336974   CO337190   CO337202   CO337307   CO337473   CO337481   CO337562   CO337768   CO338120   CO338181   CR937745   CR937781   CR937995   CR938108   CR938120   CR938492   CR938589   CR938650   DQ440314   EC053372   EC054300   EC054871   EC065724   EC068523   EC075664   EC081541   EC083267   EC197579   EC199189   EC206842   EC219702   EC219770   EC229128   EC229623   EC231421   EC235593   EC236531   EC236752   EC241494   EC242778   EC245713   EC258721   EC261099   EC261138   EC261265   EC261391   EC261426   EC261525   EC261633   EC262110   EC262411   EC263128   EC263742   EC263957   EC264043   EC264593   EC265124   EC265179   EC265198   EC265410   EC265424   EC265683   EC265749   EC265762   EC265808   EC265974   EC266010   EC266122   EC266129   EC266295   EC267206   EC267229   EC267345   EC267645   EC267747   EC267797   EC267960   EL873026   EL873027   EL873291   EL873292   EL875530   EL875541   EL879629   EL880939   EL880940   EL881480   EL881481   EL881529   EL883120   EL883364   EV575367   EV575439   EV575848   EV576206   EV577143   EV577189   EV577576   EV577717   EV578039   EV578374   EV578444   EV578515   EV579324   EV581997   EV582483   EV582714   EV584235   EV584277   EV585327   EV586381   EV586967   EV587359   EV587546   EV587952   EV588282   EV588342   EV588528   EV588697   EV588842   EV589406   EV589722   EV590560   EV590651   EV590779   EV591085   EV591493   EV591731   EV592833   EV593854   EV594897   EV595565   EV595778   EV595898   EV597548   EV600635   EV600745   M77133 AAA28667   M90422 AAA28741
UniProtKB/Swiss-Prot	P38979
UniProtKB/TrEMBL
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
expression microarray Stage Tissue/Position (including subcellular localization) Reference adult stage | female     (Arbeitman et al., 2004) in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 13 -- 16   embryonic/larval midgut   (Fisher et al., 2012) northern blot Stage Tissue/Position (including subcellular localization) Reference adult stage | female     (Arbeitman et al., 2004)
Additional Descriptive Data
	sta is expressed maternally and throughout development. It is ubiquitously expressed in embryos. (Melnick et al., 1993)
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 5 of adulthood & male -- day 7 of adulthood & male   spermatozoon   (Wasbrough et al., 2010) day 7 of adulthood -- day 49 of adulthood   adult heart   (Cammarato et al., 2011)
Additional Descriptive Data
	sta was found to be equally distributed among ribosomal particles, including polysomes, monomeric 80S ribosomes, and native ribosomal subunits. (Torok et al., 1999)
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
microtubule associated complex inferred from direct assay (Hughes et al., 2008) ribosome inferred from direct assay (Alonso and Santaren, 2006, Torok et al., 1999)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    2516.225 Larval Midgut    3705.3 Larval Hindgut    3959.1 Larval Malpighian Tubules    3560.2 Larval Fat Body    6529.7 Larval Salivary Gland    6478.2 Larval Trachea    5436.15 Larval Carcass    4159.375 Adult Head    3520.8 Adult Eye    4432.975 Adult Brain    2567 Adult Thoracic-Abdominal Ganglion    3631.4 Adult Crop    4794.6 Adult Midgut    4284.8 Adult Hindgut    3961.6 Adult Malpighian Tubules    3888.3 Adult Fat Body    5251.8 Adult Salivary Gland    8053.2 Adult Heart    5510.125 Adult VirginFemale Spermatheca    4430 Adult InseminatedFemale Spermatheca    4490.6 Adult Ovary    3207.5 Adult Testis    813.4 Adult Male Accessory Gland    8399.8 Adult Carcass    5100.4 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (2516.225) Larval Midgut  (3705.3) Larval Hindgut  (3959.1) Larval Malpighian Tubules  (3560.2) Larval Fat Body  (6529.7) Larval Salivary Gland  (6478.2) Larval Trachea  (5436.15) Larval Carcass  (4159.375) Adult Head  (3520.8) Adult Eye  (4432.975) Adult Brain  (2567) Adult Thoracic-Abdominal Ganglion  (3631.4) Adult Crop  (4794.6) Adult Midgut  (4284.8) Adult Hindgut  (3961.6) Adult Malpighian Tubules  (3888.3) Adult Fat Body  (5251.8) Adult Salivary Gland  (8053.2) Adult Heart  (5510.125) Adult VirginFemale Spermatheca  (4430) Adult InseminatedFemale Spermatheca  (4490.6) Adult Ovary  (3207.5) Adult Testis  (813.4) Adult Male Accessory Gland  (8399.8) Adult Carcass  (5100.4) Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System  (2516.225) Larval Midgut  (3705.3) Larval Hindgut  (3959.1) Larval Malpighian Tubules  (3560.2) Larval Fat Body  (6529.7) Larval Salivary Gland  (6478.2) Larval Trachea  (5436.15) Larval Carcass  (4159.375) Adult Head  (3520.8) Adult Eye  (4432.975) Adult Brain  (2567) Adult Thoracic-Abdominal Ganglion  (3631.4) Adult Crop  (4794.6) Adult Midgut  (4284.8) Adult Hindgut  (3961.6) Adult Malpighian Tubules  (3888.3) Adult Fat Body  (5251.8) Adult Salivary Gland  (8053.2) Adult Heart  (5510.125) Adult VirginFemale Spermatheca  (4430) Adult InseminatedFemale Spermatheca  (4490.6) Adult Ovary  (3207.5) Adult Testis    813.4 Adult Male Accessory Gland  (8399.8) Adult Carcass  (5100.4) Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    2516.225 Larval Midgut    3705.3 Larval Hindgut    3959.1 Larval Malpighian Tubules    3560.2 Larval Fat Body    6529.7 Larval Salivary Gland    6478.2 Larval Trachea    5436.15 Larval Carcass    4159.375 Adult Head    3520.8 Adult Eye    4432.975 Adult Brain    2567 Adult Thoracic-Abdominal Ganglion    3631.4 Adult Crop    4794.6 Adult Midgut    4284.8 Adult Hindgut    3961.6 Adult Malpighian Tubules    3888.3 Adult Fat Body    5251.8 Adult Salivary Gland    8053.2 Adult Heart    5510.125 Adult VirginFemale Spermatheca    4430 Adult InseminatedFemale Spermatheca    4490.6 Adult Ovary    3207.5 Adult Testis    813.4 Adult Male Accessory Gland    8399.8 Adult Carcass    5100.4 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    2516.225 Larval Midgut    3705.3 Larval Hindgut    3959.1 Larval Malpighian Tubules    3560.2 Larval Fat Body    6529.7 Larval Salivary Gland    6478.2 Larval Trachea    5436.15 Larval Carcass    4159.375 Adult Head    3520.8 Adult Eye    4432.975 Adult Brain    2567 Adult Thoracic-Abdominal Ganglion    3631.4 Adult Crop    4794.6 Adult Midgut    4284.8 Adult Hindgut    3961.6 Adult Malpighian Tubules    3888.3 Adult Fat Body    5251.8 Adult Salivary Gland    8053.2 Adult Heart    5510.125 Adult VirginFemale Spermatheca    4430 Adult InseminatedFemale Spermatheca    4490.6 Adult Ovary    3207.5 Adult Testis    813.4 Adult Male Accessory Gland    8399.8 Adult Carcass    5100.4 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (2516.225) Larval Midgut  (3705.3) Larval Hindgut  (3959.1) Larval Malpighian Tubules  (3560.2) Larval Fat Body  (6529.7) Larval Salivary Gland  (6478.2) Larval Trachea  (5436.15) Larval Carcass  (4159.375) Adult Head  (3520.8) Adult Eye  (4432.975) Adult Brain  (2567) Adult Thoracic-Abdominal Ganglion  (3631.4) Adult Crop  (4794.6) Adult Midgut  (4284.8) Adult Hindgut  (3961.6) Adult Malpighian Tubules  (3888.3) Adult Fat Body  (5251.8) Adult Salivary Gland  (8053.2) Adult Heart  (5510.125) Adult VirginFemale Spermatheca  (4430) Adult InseminatedFemale Spermatheca  (4490.6) Adult Ovary  (3207.5) Adult Testis  813.4 Adult Male Accessory Gland  (8399.8) Adult Carcass  (5100.4) Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System  (2516.225) Larval Midgut  (3705.3) Larval Hindgut  (3959.1) Larval Malpighian Tubules  (3560.2) Larval Fat Body  (6529.7) Larval Salivary Gland  (6478.2) Larval Trachea  (5436.15) Larval Carcass  (4159.375) Adult Head  (3520.8) Adult Eye  (4432.975) Adult Brain  (2567) Adult Thoracic-Abdominal Ganglion  (3631.4) Adult Crop  (4794.6) Adult Midgut  (4284.8) Adult Hindgut  (3961.6) Adult Malpighian Tubules  (3888.3) Adult Fat Body  (5251.8) Adult Salivary Gland  (8053.2) Adult Heart  (5510.125) Adult VirginFemale Spermatheca  (4430) Adult InseminatedFemale Spermatheca  (4490.6) Adult Ovary  (3207.5) Adult Testis    813.4 Adult Male Accessory Gland  (8399.8) Adult Carcass  (5100.4) Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    2516.225 Larval Midgut    3705.3 Larval Hindgut    3959.1 Larval Malpighian Tubules    3560.2 Larval Fat Body    6529.7 Larval Salivary Gland    6478.2 Larval Trachea    5436.15 Larval Carcass    4159.375 Adult Head    3520.8 Adult Eye    4432.975 Adult Brain    2567 Adult Thoracic-Abdominal Ganglion    3631.4 Adult Crop    4794.6 Adult Midgut    4284.8 Adult Hindgut    3961.6 Adult Malpighian Tubules    3888.3 Adult Fat Body    5251.8 Adult Salivary Gland    8053.2 Adult Heart    5510.125 Adult VirginFemale Spermatheca    4430 Adult InseminatedFemale Spermatheca    4490.6 Adult Ovary    3207.5 Adult Testis    813.4 Adult Male Accessory Gland    8399.8 Adult Carcass    5100.4 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    3520.8   NA  Eye    4432.975   NA  Brain    2567   2516.225  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    3631.4   NA  Crop    4794.6   3705.3  Midgut    4284.8   3959.1  Hindgut    3961.6   3560.2  Malpighian Tubules    3888.3   6529.7  Fat Body    5251.8   6478.2  Salivary Gland    8053.2   NA  Heart    5510.125   5436.15  Trachea    NA   NA  VirginFemale Spermatheca    4430   NA  InseminatedFemale Spermatheca    4490.6   NA  Ovary    3207.5   NA  Testis    813.4   NA  Male Accessory Gland    8399.8   4159.375  Carcass    5100.4 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    2988 central nervous system, larvae L3    1304 central nervous system, pupae P8    471 head, virgin 1-day female    589 head, virgin 4-day female    997 head, virgin 20-day female    1281 head, mated 1-day female    525 head, mated 4-day female    578 head, mated 20-day female    1096 head, mated 1-day male    552 head, mated 4-day male    390 head, mated 20-day male    593 salivary gland, larvae L3 wandering    331 salivary gland, white prepupae    878 digestive system, larvae L3 wandering    746 digestive system, 1-day adult    987 digestive system, 4-day adult    752 digestive system, 20-day adult    1157 fat body, larvae L3 wandering    639 fat body, white prepupae    434 fat body, pupae P8    1494 carcass, larvae L3 wandering    1396 carcass, 1-day adult    500 carcass, 4-day adult    651 carcass, 20-day adult    958 ovary, virgin 4-day female    759 ovary, mated 4-day female    968 testis, mated 4-day male    485 accessory gland, mated 4-day male    1761 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (2988) central nervous system, larvae L3  (1304) central nervous system, pupae P8  (471) head, virgin 1-day female  (589) head, virgin 4-day female  (997) head, virgin 20-day female  (1281) head, mated 1-day female  (525) head, mated 4-day female  (578) head, mated 20-day female  (1096) head, mated 1-day male  (552) head, mated 4-day male  (390) head, mated 20-day male  (593) salivary gland, larvae L3 wandering  (331) salivary gland, white prepupae  (878) digestive system, larvae L3 wandering  (746) digestive system, 1-day adult  (987) digestive system, 4-day adult  (752) digestive system, 20-day adult  (1157) fat body, larvae L3 wandering  (639) fat body, white prepupae  (434) fat body, pupae P8  (1494) carcass, larvae L3 wandering  (1396) carcass, 1-day adult  (500) carcass, 4-day adult  (651) carcass, 20-day adult  (958) ovary, virgin 4-day female  (759) ovary, mated 4-day female  (968) testis, mated 4-day male  (485) accessory gland, mated 4-day male  (1761) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (2988) central nervous system, larvae L3  (1304) central nervous system, pupae P8  (471) head, virgin 1-day female  (589) head, virgin 4-day female  (997) head, virgin 20-day female  (1281) head, mated 1-day female  (525) head, mated 4-day female  (578) head, mated 20-day female  (1096) head, mated 1-day male  (552) head, mated 4-day male  (390) head, mated 20-day male  (593) salivary gland, larvae L3 wandering  (331) salivary gland, white prepupae  (878) digestive system, larvae L3 wandering  (746) digestive system, 1-day adult  (987) digestive system, 4-day adult  (752) digestive system, 20-day adult  (1157) fat body, larvae L3 wandering  (639) fat body, white prepupae  (434) fat body, pupae P8  (1494) carcass, larvae L3 wandering  (1396) carcass, 1-day adult  (500) carcass, 4-day adult  (651) carcass, 20-day adult  (958) ovary, virgin 4-day female  (759) ovary, mated 4-day female  (968) testis, mated 4-day male  (485) accessory gland, mated 4-day male  (1761) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    2988 central nervous system, larvae L3    1304 central nervous system, pupae P8    471 head, virgin 1-day female    589 head, virgin 4-day female    997 head, virgin 20-day female    1281 head, mated 1-day female    525 head, mated 4-day female    578 head, mated 20-day female    1096 head, mated 1-day male    552 head, mated 4-day male    390 head, mated 20-day male    593 salivary gland, larvae L3 wandering    331 salivary gland, white prepupae    878 digestive system, larvae L3 wandering    746 digestive system, 1-day adult    987 digestive system, 4-day adult    752 digestive system, 20-day adult    1157 fat body, larvae L3 wandering    639 fat body, white prepupae    434 fat body, pupae P8    1494 carcass, larvae L3 wandering    1396 carcass, 1-day adult    500 carcass, 4-day adult    651 carcass, 20-day adult    958 ovary, virgin 4-day female    759 ovary, mated 4-day female    968 testis, mated 4-day male    485 accessory gland, mated 4-day male    1761 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    2988 central nervous system, larvae L3    1304 central nervous system, pupae P8    471 head, virgin 1-day female    589 head, virgin 4-day female    997 head, virgin 20-day female    1281 head, mated 1-day female    525 head, mated 4-day female    578 head, mated 20-day female    1096 head, mated 1-day male    552 head, mated 4-day male    390 head, mated 20-day male    593 salivary gland, larvae L3 wandering    331 salivary gland, white prepupae    878 digestive system, larvae L3 wandering    746 digestive system, 1-day adult    987 digestive system, 4-day adult    752 digestive system, 20-day adult    1157 fat body, larvae L3 wandering    639 fat body, white prepupae    434 fat body, pupae P8    1494 carcass, larvae L3 wandering    1396 carcass, 1-day adult    500 carcass, 4-day adult    651 carcass, 20-day adult    958 ovary, virgin 4-day female    759 ovary, mated 4-day female    968 testis, mated 4-day male    485 accessory gland, mated 4-day male    1761 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (2988) central nervous system, larvae L3  (1304) central nervous system, pupae P8  (471) head, virgin 1-day female  (589) head, virgin 4-day female  (997) head, virgin 20-day female  (1281) head, mated 1-day female  (525) head, mated 4-day female  (578) head, mated 20-day female  (1096) head, mated 1-day male  (552) head, mated 4-day male  (390) head, mated 20-day male  (593) salivary gland, larvae L3 wandering  (331) salivary gland, white prepupae  (878) digestive system, larvae L3 wandering  (746) digestive system, 1-day adult  (987) digestive system, 4-day adult  (752) digestive system, 20-day adult  (1157) fat body, larvae L3 wandering  (639) fat body, white prepupae  (434) fat body, pupae P8  (1494) carcass, larvae L3 wandering  (1396) carcass, 1-day adult  (500) carcass, 4-day adult  (651) carcass, 20-day adult  (958) ovary, virgin 4-day female  (759) ovary, mated 4-day female  (968) testis, mated 4-day male  (485) accessory gland, mated 4-day male  (1761) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (2988) central nervous system, larvae L3  (1304) central nervous system, pupae P8  (471) head, virgin 1-day female  (589) head, virgin 4-day female  (997) head, virgin 20-day female  (1281) head, mated 1-day female  (525) head, mated 4-day female  (578) head, mated 20-day female  (1096) head, mated 1-day male  (552) head, mated 4-day male  (390) head, mated 20-day male  (593) salivary gland, larvae L3 wandering  (331) salivary gland, white prepupae  (878) digestive system, larvae L3 wandering  (746) digestive system, 1-day adult  (987) digestive system, 4-day adult  (752) digestive system, 20-day adult  (1157) fat body, larvae L3 wandering  (639) fat body, white prepupae  (434) fat body, pupae P8  (1494) carcass, larvae L3 wandering  (1396) carcass, 1-day adult  (500) carcass, 4-day adult  (651) carcass, 20-day adult  (958) ovary, virgin 4-day female  (759) ovary, mated 4-day female  (968) testis, mated 4-day male  (485) accessory gland, mated 4-day male  (1761) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    2988 central nervous system, larvae L3    1304 central nervous system, pupae P8    471 head, virgin 1-day female    589 head, virgin 4-day female    997 head, virgin 20-day female    1281 head, mated 1-day female    525 head, mated 4-day female    578 head, mated 20-day female    1096 head, mated 1-day male    552 head, mated 4-day male    390 head, mated 20-day male    593 salivary gland, larvae L3 wandering    331 salivary gland, white prepupae    878 digestive system, larvae L3 wandering    746 digestive system, 1-day adult    987 digestive system, 4-day adult    752 digestive system, 20-day adult    1157 fat body, larvae L3 wandering    639 fat body, white prepupae    434 fat body, pupae P8    1494 carcass, larvae L3 wandering    1396 carcass, 1-day adult    500 carcass, 4-day adult    651 carcass, 20-day adult    958 ovary, virgin 4-day female    759 ovary, mated 4-day female    968 testis, mated 4-day male    485 accessory gland, mated 4-day male    1761 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of very high expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, during early pupal stages, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    1769 embryo 02-04hr    2889 embryo 04-06hr    2287 embryo 06-08hr    2408 embryo 08-10hr    2343 embryo 10-12hr    2834 embryo 12-14hr    1539 embryo 14-16hr    2603 embryo 16-18hr    1984 embryo 18-20hr    2163 embryo 20-22hr    1960 embryo 22-24hr    1407 larva L1    3061 larva L2    2291 larva L3 12hr old    2161 larva L3 puffstage 1-2    1367 larva L3 puffstage 3-6    1498 larva L3 puffstage 7-9    1270 white prepupae new    1250 white prepupae 12hr    1208 white prepupae 24hr    1355 pupae 2d postWPP    1122 pupae 3d postWPP    738 pupae 4d postWPP    1034 adult male 01day    638 adult male 05day    802 adult male 30day    1058 adult female 01day    2698 adult female 05day    2054 adult female 30day    2166 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (1769) embryo 02-04hr  (2889) embryo 04-06hr  (2287) embryo 06-08hr  (2408) embryo 08-10hr  (2343) embryo 10-12hr  (2834) embryo 12-14hr  (1539) embryo 14-16hr  (2603) embryo 16-18hr  (1984) embryo 18-20hr  (2163) embryo 20-22hr  (1960) embryo 22-24hr  (1407) larva L1  (3061) larva L2  (2291) larva L3 12hr old  (2161) larva L3 puffstage 1-2  (1367) larva L3 puffstage 3-6  (1498) larva L3 puffstage 7-9  (1270) white prepupae new  (1250) white prepupae 12hr  (1208) white prepupae 24hr  (1355) pupae 2d postWPP  (1122) pupae 3d postWPP  (738) pupae 4d postWPP  (1034) adult male 01day  (638) adult male 05day  (802) adult male 30day  (1058) adult female 01day  (2698) adult female 05day  (2054) adult female 30day  (2166) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (1769) embryo 02-04hr  (2889) embryo 04-06hr  (2287) embryo 06-08hr  (2408) embryo 08-10hr  (2343) embryo 10-12hr  (2834) embryo 12-14hr  (1539) embryo 14-16hr  (2603) embryo 16-18hr  (1984) embryo 18-20hr  (2163) embryo 20-22hr  (1960) embryo 22-24hr  (1407) larva L1  (3061) larva L2  (2291) larva L3 12hr old  (2161) larva L3 puffstage 1-2  (1367) larva L3 puffstage 3-6  (1498) larva L3 puffstage 7-9  (1270) white prepupae new  (1250) white prepupae 12hr  (1208) white prepupae 24hr  (1355) pupae 2d postWPP  (1122) pupae 3d postWPP  (738) pupae 4d postWPP  (1034) adult male 01day  (638) adult male 05day  (802) adult male 30day  (1058) adult female 01day  (2698) adult female 05day  (2054) adult female 30day  (2166) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1769 embryo 02-04hr    2889 embryo 04-06hr    2287 embryo 06-08hr    2408 embryo 08-10hr    2343 embryo 10-12hr    2834 embryo 12-14hr    1539 embryo 14-16hr    2603 embryo 16-18hr    1984 embryo 18-20hr    2163 embryo 20-22hr    1960 embryo 22-24hr    1407 larva L1    3061 larva L2    2291 larva L3 12hr old    2161 larva L3 puffstage 1-2    1367 larva L3 puffstage 3-6    1498 larva L3 puffstage 7-9    1270 white prepupae new    1250 white prepupae 12hr    1208 white prepupae 24hr    1355 pupae 2d postWPP    1122 pupae 3d postWPP    738 pupae 4d postWPP    1034 adult male 01day    638 adult male 05day    802 adult male 30day    1058 adult female 01day    2698 adult female 05day    2054 adult female 30day    2166 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    1769 embryo 02-04hr    2889 embryo 04-06hr    2287 embryo 06-08hr    2408 embryo 08-10hr    2343 embryo 10-12hr    2834 embryo 12-14hr    1539 embryo 14-16hr    2603 embryo 16-18hr    1984 embryo 18-20hr    2163 embryo 20-22hr    1960 embryo 22-24hr    1407 larva L1    3061 larva L2    2291 larva L3 12hr old    2161 larva L3 puffstage 1-2    1367 larva L3 puffstage 3-6    1498 larva L3 puffstage 7-9    1270 white prepupae new    1250 white prepupae 12hr    1208 white prepupae 24hr    1355 pupae 2d postWPP    1122 pupae 3d postWPP    738 pupae 4d postWPP    1034 adult male 01day    638 adult male 05day    802 adult male 30day    1058 adult female 01day    2698 adult female 05day    2054 adult female 30day    2166 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (1769) embryo 02-04hr  (2889) embryo 04-06hr  (2287) embryo 06-08hr  (2408) embryo 08-10hr  (2343) embryo 10-12hr  (2834) embryo 12-14hr  (1539) embryo 14-16hr  (2603) embryo 16-18hr  (1984) embryo 18-20hr  (2163) embryo 20-22hr  (1960) embryo 22-24hr  (1407) larva L1  (3061) larva L2  (2291) larva L3 12hr old  (2161) larva L3 puffstage 1-2  (1367) larva L3 puffstage 3-6  (1498) larva L3 puffstage 7-9  (1270) white prepupae new  (1250) white prepupae 12hr  (1208) white prepupae 24hr  (1355) pupae 2d postWPP  (1122) pupae 3d postWPP  (738) pupae 4d postWPP  (1034) adult male 01day  (638) adult male 05day  (802) adult male 30day  (1058) adult female 01day  (2698) adult female 05day  (2054) adult female 30day  (2166) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (1769) embryo 02-04hr  (2889) embryo 04-06hr  (2287) embryo 06-08hr  (2408) embryo 08-10hr  (2343) embryo 10-12hr  (2834) embryo 12-14hr  (1539) embryo 14-16hr  (2603) embryo 16-18hr  (1984) embryo 18-20hr  (2163) embryo 20-22hr  (1960) embryo 22-24hr  (1407) larva L1  (3061) larva L2  (2291) larva L3 12hr old  (2161) larva L3 puffstage 1-2  (1367) larva L3 puffstage 3-6  (1498) larva L3 puffstage 7-9  (1270) white prepupae new  (1250) white prepupae 12hr  (1208) white prepupae 24hr  (1355) pupae 2d postWPP  (1122) pupae 3d postWPP  (738) pupae 4d postWPP  (1034) adult male 01day  (638) adult male 05day  (802) adult male 30day  (1058) adult female 01day  (2698) adult female 05day  (2054) adult female 30day  (2166) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1769 embryo 02-04hr    2889 embryo 04-06hr    2287 embryo 06-08hr    2408 embryo 08-10hr    2343 embryo 10-12hr    2834 embryo 12-14hr    1539 embryo 14-16hr    2603 embryo 16-18hr    1984 embryo 18-20hr    2163 embryo 20-22hr    1960 embryo 22-24hr    1407 larva L1    3061 larva L2    2291 larva L3 12hr old    2161 larva L3 puffstage 1-2    1367 larva L3 puffstage 3-6    1498 larva L3 puffstage 7-9    1270 white prepupae new    1250 white prepupae 12hr    1208 white prepupae 24hr    1355 pupae 2d postWPP    1122 pupae 3d postWPP    738 pupae 4d postWPP    1034 adult male 01day    638 adult male 05day    802 adult male 30day    1058 adult female 01day    2698 adult female 05day    2054 adult female 30day    2166 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    2002 Schneider line 2 Sg4    2281 embryonic 1182-4H    2838 embryonic GM2    755 embryonic Kc167    780 embryonic S1    2125 embryonic S3    1612 leg disc CME L1    2256 wing disc CME-W2    1419 wing disc ML-DmD8    5314 wing disc ML-DmD9    2632 wing disc ML-DmD16-c3    1129 wing disc ML-DmD21    3921 wing disc ML-DmD32    3172 haltere disc ML-DmD17-c3    1963 eye-antennal disc ML-DmD11    2934 antennal disc ML-DmD20-c5    3013 mixed discs ML-DmD4-c1    2206 CNS ML-DmBG1-c1    989 CNS ML-DmBG2-c2    1156 tumorous blood cells mbn2    1332 ovary fGS/OSS    2129 ovary OSC    547 ovary OSS    353 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (2002) Schneider line 2 Sg4  (2281) embryonic 1182-4H  (2838) embryonic GM2  (755) embryonic Kc167  (780) embryonic S1  (2125) embryonic S3  (1612) leg disc CME L1  (2256) wing disc CME-W2  (1419) wing disc ML-DmD8  (5314) wing disc ML-DmD9  (2632) wing disc ML-DmD16-c3  (1129) wing disc ML-DmD21  (3921) wing disc ML-DmD32  (3172) haltere disc ML-DmD17-c3  (1963) eye-antennal disc ML-DmD11  (2934) antennal disc ML-DmD20-c5  (3013) mixed discs ML-DmD4-c1  (2206) CNS ML-DmBG1-c1  (989) CNS ML-DmBG2-c2  (1156) tumorous blood cells mbn2  (1332) ovary fGS/OSS  (2129) ovary OSC  (547) ovary OSS  (353) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  (2002) Schneider line 2 Sg4  (2281) embryonic 1182-4H  (2838) embryonic GM2  (755) embryonic Kc167  (780) embryonic S1  (2125) embryonic S3  (1612) leg disc CME L1  (2256) wing disc CME-W2  (1419) wing disc ML-DmD8  (5314) wing disc ML-DmD9  (2632) wing disc ML-DmD16-c3  (1129) wing disc ML-DmD21  (3921) wing disc ML-DmD32  (3172) haltere disc ML-DmD17-c3  (1963) eye-antennal disc ML-DmD11  (2934) antennal disc ML-DmD20-c5  (3013) mixed discs ML-DmD4-c1  (2206) CNS ML-DmBG1-c1  (989) CNS ML-DmBG2-c2  (1156) tumorous blood cells mbn2  (1332) ovary fGS/OSS  (2129) ovary OSC  (547) ovary OSS  (353) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    2002 Schneider line 2 Sg4    2281 embryonic 1182-4H    2838 embryonic GM2    755 embryonic Kc167    780 embryonic S1    2125 embryonic S3    1612 leg disc CME L1    2256 wing disc CME-W2    1419 wing disc ML-DmD8    5314 wing disc ML-DmD9    2632 wing disc ML-DmD16-c3    1129 wing disc ML-DmD21    3921 wing disc ML-DmD32    3172 haltere disc ML-DmD17-c3    1963 eye-antennal disc ML-DmD11    2934 antennal disc ML-DmD20-c5    3013 mixed discs ML-DmD4-c1    2206 CNS ML-DmBG1-c1    989 CNS ML-DmBG2-c2    1156 tumorous blood cells mbn2    1332 ovary fGS/OSS    2129 ovary OSC    547 ovary OSS    353 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    2002 Schneider line 2 Sg4    2281 embryonic 1182-4H    2838 embryonic GM2    755 embryonic Kc167    780 embryonic S1    2125 embryonic S3    1612 leg disc CME L1    2256 wing disc CME-W2    1419 wing disc ML-DmD8    5314 wing disc ML-DmD9    2632 wing disc ML-DmD16-c3    1129 wing disc ML-DmD21    3921 wing disc ML-DmD32    3172 haltere disc ML-DmD17-c3    1963 eye-antennal disc ML-DmD11    2934 antennal disc ML-DmD20-c5    3013 mixed discs ML-DmD4-c1    2206 CNS ML-DmBG1-c1    989 CNS ML-DmBG2-c2    1156 tumorous blood cells mbn2    1332 ovary fGS/OSS    2129 ovary OSC    547 ovary OSS    353 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (2002) Schneider line 2 Sg4  (2281) embryonic 1182-4H  (2838) embryonic GM2  (755) embryonic Kc167  (780) embryonic S1  (2125) embryonic S3  (1612) leg disc CME L1  (2256) wing disc CME-W2  (1419) wing disc ML-DmD8  (5314) wing disc ML-DmD9  (2632) wing disc ML-DmD16-c3  (1129) wing disc ML-DmD21  (3921) wing disc ML-DmD32  (3172) haltere disc ML-DmD17-c3  (1963) eye-antennal disc ML-DmD11  (2934) antennal disc ML-DmD20-c5  (3013) mixed discs ML-DmD4-c1  (2206) CNS ML-DmBG1-c1  (989) CNS ML-DmBG2-c2  (1156) tumorous blood cells mbn2  (1332) ovary fGS/OSS  (2129) ovary OSC  (547) ovary OSS  (353) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  (2002) Schneider line 2 Sg4  (2281) embryonic 1182-4H  (2838) embryonic GM2  (755) embryonic Kc167  (780) embryonic S1  (2125) embryonic S3  (1612) leg disc CME L1  (2256) wing disc CME-W2  (1419) wing disc ML-DmD8  (5314) wing disc ML-DmD9  (2632) wing disc ML-DmD16-c3  (1129) wing disc ML-DmD21  (3921) wing disc ML-DmD32  (3172) haltere disc ML-DmD17-c3  (1963) eye-antennal disc ML-DmD11  (2934) antennal disc ML-DmD20-c5  (3013) mixed discs ML-DmD4-c1  (2206) CNS ML-DmBG1-c1  (989) CNS ML-DmBG2-c2  (1156) tumorous blood cells mbn2  (1332) ovary fGS/OSS  (2129) ovary OSC  (547) ovary OSS  (353) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    2002 Schneider line 2 Sg4    2281 embryonic 1182-4H    2838 embryonic GM2    755 embryonic Kc167    780 embryonic S1    2125 embryonic S3    1612 leg disc CME L1    2256 wing disc CME-W2    1419 wing disc ML-DmD8    5314 wing disc ML-DmD9    2632 wing disc ML-DmD16-c3    1129 wing disc ML-DmD21    3921 wing disc ML-DmD32    3172 haltere disc ML-DmD17-c3    1963 eye-antennal disc ML-DmD11    2934 antennal disc ML-DmD20-c5    3013 mixed discs ML-DmD4-c1    2206 CNS ML-DmBG1-c1    989 CNS ML-DmBG2-c2    1156 tumorous blood cells mbn2    1332 ovary fGS/OSS    2129 ovary OSC    547 ovary OSS    353 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    1553 cold shock, 4-day adult    1292 heat shock, 4-day adult    1667 Cadmium 50 mM 6 hrs, larvae L3    1680 Cadmium 50 mM 12 hrs, larvae L3    1052 Cadmium 50 mM 48 hrs, 4-day adult    968 Cadmium 100 mM 48 hrs, 4-day adult    776 Copper 0.5 mM 12 hrs, larvae L3    1346 Copper 15 mM 48 hrs, 4-day adult    135 Zinc 5 mM 12 hrs, larvae L3    1617 Zinc 4.5 mM 48 hrs, 4-day adult    394 Ethanol 2.5% 3 hrs, larvae L3    1731 Ethanol 5% 3 hrs, larvae L3    1128 Ethanol 10% 3 hrs, larvae L3    1668 Caffeine 1.5 mg/ml 4 hrs, larvae L3    990 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1021 Caffeine 25 mg/ml 48 hrs, 4-day adult    935 Paraquat 5 mM 48 hrs, 4-day adult    1261 Paraquat 10 mM 48 hrs, 4-day adult    1820 Rotenone 2 μg 12 hrs, larvae L3    1474 Rotenone 8 μg 12 hrs, larvae L3    2037 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (1553) cold shock, 4-day adult  (1292) heat shock, 4-day adult  (1667) Cadmium 50 mM 6 hrs, larvae L3  (1680) Cadmium 50 mM 12 hrs, larvae L3  (1052) Cadmium 50 mM 48 hrs, 4-day adult  (968) Cadmium 100 mM 48 hrs, 4-day adult  (776) Copper 0.5 mM 12 hrs, larvae L3  (1346) Copper 15 mM 48 hrs, 4-day adult  (135) Zinc 5 mM 12 hrs, larvae L3  (1617) Zinc 4.5 mM 48 hrs, 4-day adult  (394) Ethanol 2.5% 3 hrs, larvae L3  (1731) Ethanol 5% 3 hrs, larvae L3  (1128) Ethanol 10% 3 hrs, larvae L3  (1668) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (990) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (1021) Caffeine 25 mg/ml 48 hrs, 4-day adult  (935) Paraquat 5 mM 48 hrs, 4-day adult  (1261) Paraquat 10 mM 48 hrs, 4-day adult  (1820) Rotenone 2 μg 12 hrs, larvae L3  (1474) Rotenone 8 μg 12 hrs, larvae L3  (2037) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult  (1553) cold shock, 4-day adult  (1292) heat shock, 4-day adult  (1667) Cadmium 50 mM 6 hrs, larvae L3  (1680) Cadmium 50 mM 12 hrs, larvae L3  (1052) Cadmium 50 mM 48 hrs, 4-day adult  (968) Cadmium 100 mM 48 hrs, 4-day adult  (776) Copper 0.5 mM 12 hrs, larvae L3  (1346) Copper 15 mM 48 hrs, 4-day adult  (135) Zinc 5 mM 12 hrs, larvae L3  (1617) Zinc 4.5 mM 48 hrs, 4-day adult  (394) Ethanol 2.5% 3 hrs, larvae L3  (1731) Ethanol 5% 3 hrs, larvae L3  (1128) Ethanol 10% 3 hrs, larvae L3  (1668) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (990) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (1021) Caffeine 25 mg/ml 48 hrs, 4-day adult  (935) Paraquat 5 mM 48 hrs, 4-day adult  (1261) Paraquat 10 mM 48 hrs, 4-day adult  (1820) Rotenone 2 μg 12 hrs, larvae L3  (1474) Rotenone 8 μg 12 hrs, larvae L3  (2037) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    1553 cold shock, 4-day adult    1292 heat shock, 4-day adult    1667 Cadmium 50 mM 6 hrs, larvae L3    1680 Cadmium 50 mM 12 hrs, larvae L3    1052 Cadmium 50 mM 48 hrs, 4-day adult    968 Cadmium 100 mM 48 hrs, 4-day adult    776 Copper 0.5 mM 12 hrs, larvae L3    1346 Copper 15 mM 48 hrs, 4-day adult    135 Zinc 5 mM 12 hrs, larvae L3    1617 Zinc 4.5 mM 48 hrs, 4-day adult    394 Ethanol 2.5% 3 hrs, larvae L3    1731 Ethanol 5% 3 hrs, larvae L3    1128 Ethanol 10% 3 hrs, larvae L3    1668 Caffeine 1.5 mg/ml 4 hrs, larvae L3    990 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1021 Caffeine 25 mg/ml 48 hrs, 4-day adult    935 Paraquat 5 mM 48 hrs, 4-day adult    1261 Paraquat 10 mM 48 hrs, 4-day adult    1820 Rotenone 2 μg 12 hrs, larvae L3    1474 Rotenone 8 μg 12 hrs, larvae L3    2037 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    1553 cold shock, 4-day adult    1292 heat shock, 4-day adult    1667 Cadmium 50 mM 6 hrs, larvae L3    1680 Cadmium 50 mM 12 hrs, larvae L3    1052 Cadmium 50 mM 48 hrs, 4-day adult    968 Cadmium 100 mM 48 hrs, 4-day adult    776 Copper 0.5 mM 12 hrs, larvae L3    1346 Copper 15 mM 48 hrs, 4-day adult    135 Zinc 5 mM 12 hrs, larvae L3    1617 Zinc 4.5 mM 48 hrs, 4-day adult    394 Ethanol 2.5% 3 hrs, larvae L3    1731 Ethanol 5% 3 hrs, larvae L3    1128 Ethanol 10% 3 hrs, larvae L3    1668 Caffeine 1.5 mg/ml 4 hrs, larvae L3    990 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1021 Caffeine 25 mg/ml 48 hrs, 4-day adult    935 Paraquat 5 mM 48 hrs, 4-day adult    1261 Paraquat 10 mM 48 hrs, 4-day adult    1820 Rotenone 2 μg 12 hrs, larvae L3    1474 Rotenone 8 μg 12 hrs, larvae L3    2037 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (1553) cold shock, 4-day adult  (1292) heat shock, 4-day adult  (1667) Cadmium 50 mM 6 hrs, larvae L3  (1680) Cadmium 50 mM 12 hrs, larvae L3  (1052) Cadmium 50 mM 48 hrs, 4-day adult  (968) Cadmium 100 mM 48 hrs, 4-day adult  (776) Copper 0.5 mM 12 hrs, larvae L3  (1346) Copper 15 mM 48 hrs, 4-day adult  (135) Zinc 5 mM 12 hrs, larvae L3  (1617) Zinc 4.5 mM 48 hrs, 4-day adult  (394) Ethanol 2.5% 3 hrs, larvae L3  (1731) Ethanol 5% 3 hrs, larvae L3  (1128) Ethanol 10% 3 hrs, larvae L3  (1668) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (990) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (1021) Caffeine 25 mg/ml 48 hrs, 4-day adult  (935) Paraquat 5 mM 48 hrs, 4-day adult  (1261) Paraquat 10 mM 48 hrs, 4-day adult  (1820) Rotenone 2 μg 12 hrs, larvae L3  (1474) Rotenone 8 μg 12 hrs, larvae L3  (2037) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult  (1553) cold shock, 4-day adult  (1292) heat shock, 4-day adult  (1667) Cadmium 50 mM 6 hrs, larvae L3  (1680) Cadmium 50 mM 12 hrs, larvae L3  (1052) Cadmium 50 mM 48 hrs, 4-day adult  (968) Cadmium 100 mM 48 hrs, 4-day adult  (776) Copper 0.5 mM 12 hrs, larvae L3  (1346) Copper 15 mM 48 hrs, 4-day adult  135 Zinc 5 mM 12 hrs, larvae L3  (1617) Zinc 4.5 mM 48 hrs, 4-day adult  (394) Ethanol 2.5% 3 hrs, larvae L3  (1731) Ethanol 5% 3 hrs, larvae L3  (1128) Ethanol 10% 3 hrs, larvae L3  (1668) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (990) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (1021) Caffeine 25 mg/ml 48 hrs, 4-day adult  (935) Paraquat 5 mM 48 hrs, 4-day adult  (1261) Paraquat 10 mM 48 hrs, 4-day adult  (1820) Rotenone 2 μg 12 hrs, larvae L3  (1474) Rotenone 8 μg 12 hrs, larvae L3  (2037) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    1553 cold shock, 4-day adult    1292 heat shock, 4-day adult    1667 Cadmium 50 mM 6 hrs, larvae L3    1680 Cadmium 50 mM 12 hrs, larvae L3    1052 Cadmium 50 mM 48 hrs, 4-day adult    968 Cadmium 100 mM 48 hrs, 4-day adult    776 Copper 0.5 mM 12 hrs, larvae L3    1346 Copper 15 mM 48 hrs, 4-day adult    135 Zinc 5 mM 12 hrs, larvae L3    1617 Zinc 4.5 mM 48 hrs, 4-day adult    394 Ethanol 2.5% 3 hrs, larvae L3    1731 Ethanol 5% 3 hrs, larvae L3    1128 Ethanol 10% 3 hrs, larvae L3    1668 Caffeine 1.5 mg/ml 4 hrs, larvae L3    990 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1021 Caffeine 25 mg/ml 48 hrs, 4-day adult    935 Paraquat 5 mM 48 hrs, 4-day adult    1261 Paraquat 10 mM 48 hrs, 4-day adult    1820 Rotenone 2 μg 12 hrs, larvae L3    1474 Rotenone 8 μg 12 hrs, larvae L3    2037 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_22 mE1_20_mRNA_expression_cluster_01
External Data & Images
Linkouts	BDGP expression data • LD09376 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0003517 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG14792-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for sta Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal sta2 sta3 stalp24 stalp41 stalp54 stalp62 stalp87 stalp94 stalp98 stalp99 stalp145 stalp157 stalt36 stat3 lethal, with Scer\GAL4pnr-MD237 staGD8443 lethal | larval stage staG0130 staG0448 lethal | larval stage | recessive sta2 lethal | pupal stage, with Scer\GAL4pnr-MD237 staGD16287 lethal | recessive sta2 staB12.1 staD11.5 staG0130 staG0448 stalp41 stalp62 stalp87 stalp94 stalp99 stalp157 stalt36 staPG11 staPL33 staPL65#2 staPL79 staPL93 viable sta1 Sterility Allele female sterile sta1 Other Phenotypes Allele aging defective | recessive sta2 visible sta1 sta2 stalp41 stalp62 stalp87 stalp94 stalp99 stalp157 stalt36 wild-type sta+t4.4 Phenotype manifest in Allele antenna sta1 anterior lymph gland pair sta2 arista sta1 embryonic/larval lymph gland sta2 macrochaeta sta1
Classical Alleles ( 25 )
For All Classical Alleles Show
Allele of sta Class Mutagen Stocks Known lesion sta1 hypomorphic allele - genetic evidence X ray 3 -- staG0130 P-element activity 2 -- staG0448 P-element activity 2 -- sta2 ethyl methanesulfonate 0 -- sta3 ethyl methanesulfonate 0 -- staB12.1</