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Gene Dmel\stil

General Information
Symbol	Dmel\stil	Species	D. melanogaster
Name	stand still	Annotation symbol	CG8592
Feature type	protein_coding_gene	FlyBase ID	FBgn0003527
Gene Model Status	Current	Stock availability	7 publicly available
Genomic Location
Chromosome (arm)	2R	Recombination map	2-63
Cytogenetic map	49B5-49B5	Sequence location	2R:8,457,872..8,459,388 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene stand still is referred to in FlyBase by the symbol Dmel\stil (CG8592, FBgn0003527). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process: female sex determination; female sex differentiation; multicellular organismal development; oogenesis. 18 alleles are reported. The phenotypes of these alleles are annotated with: chorion; ovary; oocyte; egg chamber; dorsal appendage. It has one annotated transcript and one annotated polypeptide. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of extremely low expression. Peak expression observed within 00-06 hour embryonic stages, at stages throughout the pupal period, in stages of adults of both sexes. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult ovary, adult testis. Comments on Affy2 ProbeSet: ProbeSet 1627009_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of stil. Gene sequence location is 2R:8457872..8459388.
User Contributed Data
	Beta version, feedback welcome
Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
Gene/Allele symbols may differ from current usage	stil: stand still (T. Schupbach) Female sterile; homozygous females contain few developing egg chambers in their ovaries, which may contain abnormal numbers of nurse cells and usually degenerate before yolk uptake begins.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 49B5-49B5   Limits computationally determined from genome sequence between P{EP}CG8569EP1182 and P{EP}AmphEP2175&P{lacW}spt4k05316
Experimentally Determined Cytological Location
Cytogenetic map Notes References 49A-49B     (Pennetta and Pauli, 1996) 49A-49B   (determined by in situ hybridisation)   (Pennetta and Pauli, 1995)
Experimentally Determined Recombination Data
Location	2-63 (Gutzeit and Arendt, 1994)
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\stil for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.49
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) stil-RA FBtr0087825  NM_057404   1171   321
Additional Transcript Data & Comments
Reported size (kB)	1.2 (northern blot) (Pennetta and Pauli, 1997)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein stil-PA   FBpp0086938   35.8   321   9.74     NP_476752   AAF58490
Additional Polypeptide Data & Comments
Reported size (kDa)	321 (aa) (Pennetta and Pauli, 1997) 40 (kD observed); 35.8 (kD predicted) (Sahut-Barnola and Pauli, 1999)
Comments
External Data
Linkouts
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA803919   AE013599 AAF58490   AC007356   AI107259   AI402633   AW940236   AY075316 AAL68183   BF498128   CL868529   CO267610   CO331944   CO339213   CZ479662   CZ479663   EC090600   EC222119   EC256694   EV581249   Y10276 CAA71319   Y10277 CAA71320
UniProtKB/Swiss-Prot	P92189
UniProtKB/TrEMBL
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference adult stage & oogenesis   nurse cell   (Pennetta and Pauli, 1997) germarium   (Pennetta and Pauli, 1997)
Additional Descriptive Data
	stil transcripts are first detected in the germarium where they are observed in all of the germ cells including the stem cells. They are present in the cytoplasm of nurse cells through most of oogenesis and reach a peak in stage S10. No staining in the oocyte is seen. (Pennetta and Pauli, 1997)
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
immunolocalization Stage Tissue/Position (including subcellular localization) Reference embryonic stage 11 -- 17   germline cell   • nucleus (Sahut-Barnola and Pauli, 1999) first instar larval stage   germline cell   • nucleus (Sahut-Barnola and Pauli, 1999) second instar larval stage   germline cell   • nucleus (Sahut-Barnola and Pauli, 1999) third instar larval stage   spermatogonium   (Sahut-Barnola and Pauli, 1999) spermatocyte   (Sahut-Barnola and Pauli, 1999) male germline stem cell   (Sahut-Barnola and Pauli, 1999) primary spermatocyte cyst   (Sahut-Barnola and Pauli, 1999) testis | restricted   (Sahut-Barnola and Pauli, 1999) ovary   (Sahut-Barnola and Pauli, 1999) adult stage | male   spermatocyte   (Sahut-Barnola and Pauli, 1999) spermatogonium   (Sahut-Barnola and Pauli, 1999) primary spermatocyte cyst   (Sahut-Barnola and Pauli, 1999) male germline stem cell   (Sahut-Barnola and Pauli, 1999) adult stage & oogenesis   ovary   (Sahut-Barnola and Pauli, 1999) adult stage | female & oogenesis   germline cell   • nucleus (Sahut-Barnola and Pauli, 1999) adult stageoogenesis stage S1 -- S10   oocyte   • nucleus (Sahut-Barnola and Pauli, 1999) adult stageoogenesis stage S1 -- S13   nurse cell   • nucleus (Sahut-Barnola and Pauli, 1999)
Additional Descriptive Data
	stil protein is detected in the nucleus of germ cells starting at embryonic stage 11. Expression continues to be detected in the nuclei of germ cells of both sexes in first and second larval instars. During the third larval instar, differences in staining between sexes become apparent. In females, all germ cell nuclei are stained in third instar larvae and in ovaries of adults. In adult females, oocyte nuclei stain until stage S10, while nurse cell nuclei continue to be stained until they degenerate. In males, stil protein is detected in some, but not all germ cell nuclei. In third instar larval and adult testes, expression levels are low at the tip of the testes, are high in newly formed 16-cell cysts of primary spermatocytes, but disappear thereafter. (Sahut-Barnola and Pauli, 1999)
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
nuclear chromatin inferred from direct assay (assigned by UniProtKB) (Sahut-Barnola and Pauli, 1999)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult ovary, adult testis. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    4.925 Larval Midgut    5.7 Larval Hindgut    4.9 Larval Malpighian Tubules    4.1 Larval Fat Body    31.5 Larval Salivary Gland    6.8 Larval Trachea    7.025 Larval Carcass    3.475 Adult Head    5.5 Adult Eye    1.65 Adult Brain    4.1 Adult Thoracic-Abdominal Ganglion    4 Adult Crop    4.4 Adult Midgut    3.7 Adult Hindgut    7.5 Adult Malpighian Tubules    6.1 Adult Fat Body    10.1 Adult Salivary Gland    18.5 Adult Heart    3.675 Adult VirginFemale Spermatheca    8.2 Adult InseminatedFemale Spermatheca    9.1 Adult Ovary    151.4 Adult Testis    184.9 Adult Male Accessory Gland    13 Adult Carcass    13.3 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    4.925 Larval Midgut    5.7 Larval Hindgut    4.9 Larval Malpighian Tubules    4.1 Larval Fat Body    31.5 Larval Salivary Gland    6.8 Larval Trachea    7.025 Larval Carcass    3.475 Adult Head    5.5 Adult Eye    1.65 Adult Brain    4.1 Adult Thoracic-Abdominal Ganglion    4 Adult Crop    4.4 Adult Midgut    3.7 Adult Hindgut    7.5 Adult Malpighian Tubules    6.1 Adult Fat Body    10.1 Adult Salivary Gland    18.5 Adult Heart    3.675 Adult VirginFemale Spermatheca    8.2 Adult InseminatedFemale Spermatheca    9.1 Adult Ovary    151.4 Adult Testis    184.9 Adult Male Accessory Gland    13 Adult Carcass    13.3 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    4.925 Larval Midgut    5.7 Larval Hindgut    4.9 Larval Malpighian Tubules    4.1 Larval Fat Body    31.5 Larval Salivary Gland    6.8 Larval Trachea    7.025 Larval Carcass    3.475 Adult Head    5.5 Adult Eye    1.65 Adult Brain    4.1 Adult Thoracic-Abdominal Ganglion    4 Adult Crop    4.4 Adult Midgut    3.7 Adult Hindgut    7.5 Adult Malpighian Tubules    6.1 Adult Fat Body    10.1 Adult Salivary Gland    18.5 Adult Heart    3.675 Adult VirginFemale Spermatheca    8.2 Adult InseminatedFemale Spermatheca    9.1 Adult Ovary    151.4 Adult Testis    184.9 Adult Male Accessory Gland    13 Adult Carcass    13.3 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    4.925 Larval Midgut    5.7 Larval Hindgut    4.9 Larval Malpighian Tubules    4.1 Larval Fat Body    31.5 Larval Salivary Gland    6.8 Larval Trachea    7.025 Larval Carcass    3.475 Adult Head    5.5 Adult Eye    1.65 Adult Brain    4.1 Adult Thoracic-Abdominal Ganglion    4 Adult Crop    4.4 Adult Midgut    3.7 Adult Hindgut    7.5 Adult Malpighian Tubules    6.1 Adult Fat Body    10.1 Adult Salivary Gland    18.5 Adult Heart    3.675 Adult VirginFemale Spermatheca    8.2 Adult InseminatedFemale Spermatheca    9.1 Adult Ovary    151.4 Adult Testis    184.9 Adult Male Accessory Gland    13 Adult Carcass    13.3 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    4.925 Larval Midgut    5.7 Larval Hindgut    4.9 Larval Malpighian Tubules    4.1 Larval Fat Body    31.5 Larval Salivary Gland    6.8 Larval Trachea    7.025 Larval Carcass    3.475 Adult Head    5.5 Adult Eye    1.65 Adult Brain    4.1 Adult Thoracic-Abdominal Ganglion    4 Adult Crop    4.4 Adult Midgut    3.7 Adult Hindgut    7.5 Adult Malpighian Tubules    6.1 Adult Fat Body    10.1 Adult Salivary Gland    18.5 Adult Heart    3.675 Adult VirginFemale Spermatheca    8.2 Adult InseminatedFemale Spermatheca    9.1 Adult Ovary    151.4 Adult Testis    184.9 Adult Male Accessory Gland    13 Adult Carcass    13.3 Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    4.925 Larval Midgut    5.7 Larval Hindgut    4.9 Larval Malpighian Tubules    4.1 Larval Fat Body    31.5 Larval Salivary Gland    6.8 Larval Trachea    7.025 Larval Carcass    3.475 Adult Head    5.5 Adult Eye    1.65 Adult Brain    4.1 Adult Thoracic-Abdominal Ganglion    4 Adult Crop    4.4 Adult Midgut    3.7 Adult Hindgut    7.5 Adult Malpighian Tubules    6.1 Adult Fat Body    10.1 Adult Salivary Gland    18.5 Adult Heart    3.675 Adult VirginFemale Spermatheca    8.2 Adult InseminatedFemale Spermatheca    9.1 Adult Ovary    151.4 Adult Testis    184.9 Adult Male Accessory Gland    13 Adult Carcass    13.3 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    4.925 Larval Midgut    5.7 Larval Hindgut    4.9 Larval Malpighian Tubules    4.1 Larval Fat Body    31.5 Larval Salivary Gland    6.8 Larval Trachea    7.025 Larval Carcass    3.475 Adult Head    5.5 Adult Eye    1.65 Adult Brain    4.1 Adult Thoracic-Abdominal Ganglion    4 Adult Crop    4.4 Adult Midgut    3.7 Adult Hindgut    7.5 Adult Malpighian Tubules    6.1 Adult Fat Body    10.1 Adult Salivary Gland    18.5 Adult Heart    3.675 Adult VirginFemale Spermatheca    8.2 Adult InseminatedFemale Spermatheca    9.1 Adult Ovary    151.4 Adult Testis    184.9 Adult Male Accessory Gland    13 Adult Carcass    13.3 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    4.925 Larval Midgut    5.7 Larval Hindgut    4.9 Larval Malpighian Tubules    4.1 Larval Fat Body    31.5 Larval Salivary Gland    6.8 Larval Trachea    7.025 Larval Carcass    3.475 Adult Head    5.5 Adult Eye    1.65 Adult Brain    4.1 Adult Thoracic-Abdominal Ganglion    4 Adult Crop    4.4 Adult Midgut    3.7 Adult Hindgut    7.5 Adult Malpighian Tubules    6.1 Adult Fat Body    10.1 Adult Salivary Gland    18.5 Adult Heart    3.675 Adult VirginFemale Spermatheca    8.2 Adult InseminatedFemale Spermatheca    9.1 Adult Ovary    151.4 Adult Testis    184.9 Adult Male Accessory Gland    13 Adult Carcass    13.3 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    5.5   NA  Eye    1.65   NA  Brain    4.1   4.925  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    4   NA  Crop    4.4   5.7  Midgut    3.7   4.9  Hindgut    7.5   4.1  Malpighian Tubules    6.1   no informative data  Fat Body    no informative data   6.8  Salivary Gland    no informative data   NA  Heart    3.675   7.025  Trachea    NA   NA  VirginFemale Spermatheca    8.2   NA  InseminatedFemale Spermatheca    9.1   NA  Ovary    151.4   NA  Testis    184.9   NA  Male Accessory Gland    no informative data   3.475  Carcass    no informative data FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    11 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    0 carcass, larvae L3 wandering    0 carcass, 1-day adult    0 carcass, 4-day adult    1 carcass, 20-day adult    0 ovary, virgin 4-day female    14 ovary, mated 4-day female    10 testis, mated 4-day male    22 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    11 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    0 carcass, larvae L3 wandering    0 carcass, 1-day adult    0 carcass, 4-day adult    1 carcass, 20-day adult    0 ovary, virgin 4-day female    14 ovary, mated 4-day female    10 testis, mated 4-day male    22 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    11 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    0 carcass, larvae L3 wandering    0 carcass, 1-day adult    0 carcass, 4-day adult    1 carcass, 20-day adult    0 ovary, virgin 4-day female    14 ovary, mated 4-day female    10 testis, mated 4-day male    22 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    11 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    0 carcass, larvae L3 wandering    0 carcass, 1-day adult    0 carcass, 4-day adult    1 carcass, 20-day adult    0 ovary, virgin 4-day female    14 ovary, mated 4-day female    10 testis, mated 4-day male    22 accessory gland, mated 4-day male    2 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    11 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    0 carcass, larvae L3 wandering    0 carcass, 1-day adult    0 carcass, 4-day adult    1 carcass, 20-day adult    0 ovary, virgin 4-day female    14 ovary, mated 4-day female    10 testis, mated 4-day male    22 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    11 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    0 carcass, larvae L3 wandering    0 carcass, 1-day adult    0 carcass, 4-day adult    1 carcass, 20-day adult    0 ovary, virgin 4-day female    14 ovary, mated 4-day female    10 testis, mated 4-day male    22 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    11 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    0 carcass, larvae L3 wandering    0 carcass, 1-day adult    0 carcass, 4-day adult    1 carcass, 20-day adult    0 ovary, virgin 4-day female    14 ovary, mated 4-day female    10 testis, mated 4-day male    22 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    11 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    0 carcass, larvae L3 wandering    0 carcass, 1-day adult    0 carcass, 4-day adult    1 carcass, 20-day adult    0 ovary, virgin 4-day female    14 ovary, mated 4-day female    10 testis, mated 4-day male    22 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of extremely low expression. Peak expression observed within 00-06 hour embryonic stages, at stages throughout the pupal period, in stages of adults of both sexes. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    15 embryo 02-04hr    1 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    1 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    3 larva L3 puffstage 7-9    3 white prepupae new    3 white prepupae 12hr    5 white prepupae 24hr    6 pupae 2d postWPP    6 pupae 3d postWPP    5 pupae 4d postWPP    5 adult male 01day    8 adult male 05day    13 adult male 30day    11 adult female 01day    6 adult female 05day    14 adult female 30day    13 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    15 embryo 02-04hr    1 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    1 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    3 larva L3 puffstage 7-9    3 white prepupae new    3 white prepupae 12hr    5 white prepupae 24hr    6 pupae 2d postWPP    6 pupae 3d postWPP    5 pupae 4d postWPP    5 adult male 01day    8 adult male 05day    13 adult male 30day    11 adult female 01day    6 adult female 05day    14 adult female 30day    13 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    15 embryo 02-04hr    1 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    1 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    3 larva L3 puffstage 7-9    3 white prepupae new    3 white prepupae 12hr    5 white prepupae 24hr    6 pupae 2d postWPP    6 pupae 3d postWPP    5 pupae 4d postWPP    5 adult male 01day    8 adult male 05day    13 adult male 30day    11 adult female 01day    6 adult female 05day    14 adult female 30day    13 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    15 embryo 02-04hr    1 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    1 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    3 larva L3 puffstage 7-9    3 white prepupae new    3 white prepupae 12hr    5 white prepupae 24hr    6 pupae 2d postWPP    6 pupae 3d postWPP    5 pupae 4d postWPP    5 adult male 01day    8 adult male 05day    13 adult male 30day    11 adult female 01day    6 adult female 05day    14 adult female 30day    13 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    15 embryo 02-04hr    1 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    1 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    3 larva L3 puffstage 7-9    3 white prepupae new    3 white prepupae 12hr    5 white prepupae 24hr    6 pupae 2d postWPP    6 pupae 3d postWPP    5 pupae 4d postWPP    5 adult male 01day    8 adult male 05day    13 adult male 30day    11 adult female 01day    6 adult female 05day    14 adult female 30day    13 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    15 embryo 02-04hr    1 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    1 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    3 larva L3 puffstage 7-9    3 white prepupae new    3 white prepupae 12hr    5 white prepupae 24hr    6 pupae 2d postWPP    6 pupae 3d postWPP    5 pupae 4d postWPP    5 adult male 01day    8 adult male 05day    13 adult male 30day    11 adult female 01day    6 adult female 05day    14 adult female 30day    13 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    15 embryo 02-04hr    1 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    1 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    3 larva L3 puffstage 7-9    3 white prepupae new    3 white prepupae 12hr    5 white prepupae 24hr    6 pupae 2d postWPP    6 pupae 3d postWPP    5 pupae 4d postWPP    5 adult male 01day    8 adult male 05day    13 adult male 30day    11 adult female 01day    6 adult female 05day    14 adult female 30day    13 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    15 embryo 02-04hr    1 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    1 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    3 larva L3 puffstage 7-9    3 white prepupae new    3 white prepupae 12hr    5 white prepupae 24hr    6 pupae 2d postWPP    6 pupae 3d postWPP    5 pupae 4d postWPP    5 adult male 01day    8 adult male 05day    13 adult male 30day    11 adult female 01day    6 adult female 05day    14 adult female 30day    13 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    1 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    1 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    1 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    1 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    0 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    1 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    1 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    1 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    1 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    1 cold shock, 4-day adult    1 heat shock, 4-day adult    5 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    1 Cadmium 50 mM 48 hrs, 4-day adult    4 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    2 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    9 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    2 Paraquat 5 mM 48 hrs, 4-day adult    6 Paraquat 10 mM 48 hrs, 4-day adult    5 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    1 cold shock, 4-day adult    1 heat shock, 4-day adult    5 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    1 Cadmium 50 mM 48 hrs, 4-day adult    4 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    2 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    9 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    2 Paraquat 5 mM 48 hrs, 4-day adult    6 Paraquat 10 mM 48 hrs, 4-day adult    5 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    1 cold shock, 4-day adult    1 heat shock, 4-day adult    5 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    1 Cadmium 50 mM 48 hrs, 4-day adult    4 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    2 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    9 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    2 Paraquat 5 mM 48 hrs, 4-day adult    6 Paraquat 10 mM 48 hrs, 4-day adult    5 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    1 cold shock, 4-day adult    1 heat shock, 4-day adult    5 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    1 Cadmium 50 mM 48 hrs, 4-day adult    4 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    2 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    9 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    2 Paraquat 5 mM 48 hrs, 4-day adult    6 Paraquat 10 mM 48 hrs, 4-day adult    5 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    1 cold shock, 4-day adult    1 heat shock, 4-day adult    5 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    1 Cadmium 50 mM 48 hrs, 4-day adult    4 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    2 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    9 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    2 Paraquat 5 mM 48 hrs, 4-day adult    6 Paraquat 10 mM 48 hrs, 4-day adult    5 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    1 cold shock, 4-day adult    1 heat shock, 4-day adult    5 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    1 Cadmium 50 mM 48 hrs, 4-day adult    4 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    2 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    9 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    2 Paraquat 5 mM 48 hrs, 4-day adult    6 Paraquat 10 mM 48 hrs, 4-day adult    5 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    1 cold shock, 4-day adult    1 heat shock, 4-day adult    5 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    1 Cadmium 50 mM 48 hrs, 4-day adult    4 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    2 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    9 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    2 Paraquat 5 mM 48 hrs, 4-day adult    6 Paraquat 10 mM 48 hrs, 4-day adult    5 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    1 cold shock, 4-day adult    1 heat shock, 4-day adult    5 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    1 Cadmium 50 mM 48 hrs, 4-day adult    4 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    2 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    9 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    2 Paraquat 5 mM 48 hrs, 4-day adult    6 Paraquat 10 mM 48 hrs, 4-day adult    5 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_21 mE1_20_mRNA_expression_cluster_20
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0003527 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG8592-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal | heat sensitive stilhs.PS viable stilEY11912 stilEY16156 viable, with Scer\GAL4pnr-MD237 stilGD13979 Sterility Allele female sterile stil1 stil2 female sterile | recessive stil1 stil2 stil3 fertile stilEY11912 stilEY16156 Other Phenotypes Allele sex-determination defective | recessive stil5 stil6 wild-type stil+t5.3 stil+t11 Phenotype manifest in Allele chorion stil1 stil2 stil3 dorsal appendage stil1 stil2 stil3 egg chamber stil1 stil2 stil3 germline cell | female stil4 stil5 stil6 oocyte stil1 stil2 stil4 ovary stil1 stil2 stil3 stil4 stil5 stil6
Classical Alleles ( 11 )
For All Classical Alleles Show
Allele of stil Class Mutagen Stocks Known lesion stil3 ethyl methanesulfonate 1 -- stil4 hypomorphic allele - genetic evidence ethyl methanesulfonate 1 Yes stilEY11912 P-element activity 1 -- stilEY16156 P-element activity 1 -- stil1 ethyl methanesulfonate 0 Yes stil2 loss of function allele ethyl methanesulfonate 0 Yes stil5 hypomorphic allele - genetic evidence diepoxybutane 0 Yes stil6 hypomorphic allele - genetic evidence ethyl methanesulfonate 0 Yes stile01840 piggyBac transposase 0 -- stile01841 piggyBac transposase 0 -- stilunspecified 0 --
Alleles Carried on Transgenic Constructs ( 7 )
For All Alleles Carried on Transgenic Constructs Show
Allele of stil Class Mutagen Stocks Known lesion stilGD13979 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes stilGL01230 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes stilKK105318 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes stil+t11 in vitro construct - genomic fragment 0 Yes stil+t5.3 in vitro construct - genomic fragment 0 Yes stilhs.PS in vitro construct - regulatory fusion 0 Yes stilNIG.8592R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(2R)stil-A (Pennetta and Pauli, 1997) Df(2R)stil-B (Pennetta and Pauli, 1997) Df(2R)vg135 (Schupbach and Wieschaus, 1991, Mulligan et al., 1996, Pennetta and Pauli, 1997) Df(2R)vg-C (Mulligan et al., 1996, Pennetta and Pauli, 1997)
Not disrupted in	Df(2R)Arp1.Fbf1a (Pennetta and Pauli, 1997) Df(2R)CX1 (Mulligan et al., 1996) Df(2R)en30 (Mulligan et al., 1996) Df(2R)vg-B (Mulligan et al., 1996) In(2R)vgU (Mulligan et al., 1996)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD13979} NA P{KK105318} NA P{NIG.8592R} NA P{TRiP.GL01230} NA heat-shock construct P{hs-stil.B} NA characterization construct P{stil+t5.3} NA P{stil+t11} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EPgy2}stilEY11912 NA P{EPgy2}stilEY16156 NA miscellaneous insertions PBac{RB}stile01840 NA PBac{RB}stile01841 NA
Gene Ontology: Function, Process & Cellular Component ( 5 unique terms )
	There is no information supporting a molecular function term for this gene. (Based on a review of available data before: 2006)
Terms Based on Experimental Evidence ( 5 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
female sex determination inferred from mutant phenotype (assigned by UniProtKB) (Sahut-Barnola and Pauli, 1999, Pennetta and Pauli, 1997) female sex differentiation inferred from mutant phenotype (assigned by UniProtKB) (Sahut-Barnola and Pauli, 1999, Pennetta and Pauli, 1997) multicellular organismal development inferred from mutant phenotype (assigned by UniProtKB) (Sahut-Barnola and Pauli, 1999) oogenesis inferred from mutant phenotype (Schupbach and Wieschaus, 1991)
Cellular Component
CV term Evidence References
nuclear chromatin inferred from direct assay (assigned by UniProtKB) (Sahut-Barnola and Pauli, 1999)
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
stil - CtBP anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions stil allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 62154 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0003527 DroID - A comprehensive database of gene and protein interactions. • FBgn0003527 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 36380
Orthologs
OrthoDB Orthologs (15) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6V9V9R Dipteran inclusive ortholog search No orthologs identified Insect inclusive ortholog search EOG6PK14K Arthropod inclusive ortholog search No orthologs identified Metazoa inclusive ortholog search No orthologs identified
Orthologs in Drosophila Species (EOG6V9V9R)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\stil     Drosophila simulans   Dsim\GD10901 Y   Drosophila sechellia   Dsec\GM21404 Y   Drosophila erecta   Dere\GG20317 Y   Drosophila yakuba   Dyak\GE12476 Y   Drosophila ananassae   Dana\GF13395 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA21188 Y   Drosophila persimilis   Dper\GL21305 Y   Drosophila willistoni   Dwil\GK23151 Y   Drosophila virilis   Dvir\GJ22256 Y   Drosophila mojavensis   Dmoj\GI19124 Y   Drosophila grimshawi   Dgri\GH22037 Y
Orthologs in non-Drosophila Dipterans (None identified)
No non-Drosophilid orthologies identified
Orthologs in non-Dipteran Insects (EOG6PK14K)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Acyrthosiphon pisum Pea aphid  Apim\ACYPI47039   Acyrthosiphon pisum Pea aphid  Apim\ACYPI005697   Acyrthosiphon pisum Pea aphid  Apim\ACYPI37547
Orthologs in non-Insect Arthropods (None identified)
No non-Insect Arthropod orthologies identified
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD10901 Drosophila sechellia Dsec\GM21404 Drosophila erecta Dere\GG20317 Drosophila yakuba Dyak\GE12476 Drosophila ananassae Dana\GF13395 Drosophila pseudoobscura pseudoobscura Dpse\GA21188 Drosophila persimilis Dper\GL21305 Drosophila willistoni Dwil\GK23151 Drosophila virilis Dvir\GJ22256 Drosophila mojavensis Dmoj\GI19124 Drosophila grimshawi Dgri\GH22037
Stocks & Reagents
Stocks Listed in FlyBase ( 7 )
Bloomington	533 stil3/CyO 38433 cn1 stil4/SM6a 20709 y1 w67c23; P{EPgy2}stilEY11912 21191 y1 w67c23; P{EPgy2}stilEY16156 41648 y1 v1; P{TRiP.GL01230}attP2/TM3, Sb1
VDRC	v101646 P{KK105318}VIE-260B v35978 w1118; P{GD13979}v35978
Genomic Clones ( 1 )
	BACR24H09 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 12 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH06596
Other clones	DPiM_GH06596
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT12493 GH21887 GM10835
Other clones	38630 214245.35 274708 Dmel_dig_014186_0657_2882 EK151063 EK302056 EP01229
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0003527 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 36380
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
	stil has been cloned and sequenced, and its expression pattern has been analysed. (Pennetta and Pauli, 1997) The most severe mutations produce agametic ovaries that lack germ cell clusters. Less severe mutations exhibit cell-associated cytoskeletal defects that underlie a variety of phenotypic anomalies. (Mulligan et al., 1996) Genetic and morphological analysis of stil. (Mulligan et al., 1996) stil has a role in specifying or maintaining a cytoskeletal component that is required in the germ line during oogenesis, and possibly during germ line sex determination. (Mulligan et al., 1996) Surviving germ cells in stil mutants exhibit a primary spermatocyte morphology suggesting that stil is a germline sex determination gene. (Pauli et al., 1995) Mutations in stil cause two characterisitic phenotypes: death of female germ cells and surviving germ cells show a sexual transformation and differentiate as spermatocytes. (Pennetta and Pauli, 1995) stil is required in the female but not male germline. (Pennetta and Pauli, 1995) Mutants exhibit reduced quantities of yolk in the oocytes due to lack of functional gene product in the germ cells. (Gutzeit and Arendt, 1994) The stil locus affects early oogenesis: mutations cause the production of few, defective germ cells. (Schupbach and Wieschaus, 1991)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_057404 RefSeq (Proteins) • NP_476752 DDBJ / EMBL / GenBank • AAF58490 AAL68183 AC007356 AI107259 AW940236 AY075316 CAA71319 CAA71320 CL868529 CZ479662 CZ479663 Y10276 Y10277 Entrez Gene - A searchable database of RefSeq genes. • 36380 UniProtKB/Swiss-Prot • P92189
Other Crossreferences
Linkouts
	BioGRID - A database of protein and genetic interactions • 62154 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0003527 DroID - A comprehensive database of gene and protein interactions. • FBgn0003527 DRSC - Results from RNAi screens. • FBgn0003527 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0003527 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG8592-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0003527 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 36380 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 36380 modMine - Data generated by the modENCODE project. • FBgn0003527
Synonyms & Secondary IDs ( 8 )
Reported As
Symbol Synonym	152072_at (Kristensen et al., 2005) CG8592 (Keleman et al., 2009.8.5, Ni et al., 2010.12.1) stil (Casper and Van Doren, 2009, Janic et al., 2010, Japanese National Institute of Genetics, 2012.5.21) Stil (Baxley et al., 2011) Y10276 (Ptak and Petrov, 2002)
Name Synonym	STAND STILL (Pauli, 1996.12.31, Pauli, 1996.12.31) stand still (Casper and Van Doren, 2006, Casper and Van Doren, 2009, Musters et al., 2006) Stand still (Baxley et al., 2011)
Secondary FlyBase IDs
References ( 43 )
Generate a list of	All references relating to this gene ( 43 )
List References by type	Research paper  ( 15 ) Supplementary material  ( 4 ) Review  ( 3 ) Personal communication to FlyBase  ( 8 ) Abstract  ( 7 ) FlyBase analysis  ( 3 ) DNA/RNA sequence record  ( 2 ) Stock list  ( 1 )
Recent research papers ( 1 )
	Baxley et al., 2011, Dev. Biol. 356(2): 398--410 The role of the Suppressor of Hairy-wing insulator protein in Drosophila oogenesis. [FBrf0214454] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2011 Show reviews ...