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Gene Dmel\suffix

General Information
Symbol	Dmel\suffix	Species	D. melanogaster
Name	suffix element	Annotation symbol
Feature type	repeat_region	FlyBase ID	FBgn0003561
Gene Model Status	Unannotated	Stock availability	None publicly available
Genomic Location
Chromosome (arm)		Recombination map
Cytogenetic map		Sequence location
Summary Information
Automatically generated summary See sections below for more information	The gene suffix element is referred to in FlyBase by the symbol Dmel\suffix (FBgn0003561). It is a repeat_region from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. No alleles are reported. It has no annotated transcripts. Gene has not been localized to the genome sequence.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa)
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AF363617   AF363618   AF363619   AF363620   AF363621   AF363622   AF363623   AF363624   AF363625   AF363626   M54888   M54969   M54970   M54971   M54972   M54973   M54974   X01449   X04342   X04343   X04344   X04345   X04346
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
Mapped Features
Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
modENCODE Anatomy RNA-Seq
modENCODE Development RNA-Seq
modENCODE Cell Lines RNA-Seq
modENCODE Treatments RNA-Seq
Expression Clusters
External Data & Images
Linkouts
Alleles & Phenotypes
Summary of Allele Phenotypes
Phenotype manifest in Allele
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of suffix Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 0 )
For All Alleles Carried on Transgenic Constructs Show
Allele of suffix Class Mutagen Stocks Known lesion
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	repeat_region
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions suffix allele Gene References
External Data
Linkouts
Orthologs
OrthoDB Orthologs (0) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search No orthologs identified Dipteran inclusive ortholog search No orthologs identified Insect inclusive ortholog search No orthologs identified Arthropod inclusive ortholog search No orthologs identified Metazoa inclusive ortholog search No orthologs identified
Orthologs in Drosophila Species (None identified)
No orthologies identified
Orthologs in non-Drosophila Dipterans (None identified)
No non-Drosophilid orthologies identified
Orthologs in non-Dipteran Insects (None identified)
No non-Dipteran orthologies identified
Orthologs in non-Insect Arthropods (None identified)
No non-Insect Arthropod orthologies identified
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (0) based on analysis using Dmel annotation version 4.3
No orthologs identified
Stocks & Reagents
Stocks Listed in FlyBase ( 0 )
Genomic Clones ( 0 )
cDNA Clones ( 0 )
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
RNAi & Array Information
Linkouts
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
	Sense and antisense transcripts of suffix have been detected at different stages of development. (Churikov and Kretova, 2003) Insertions of suffix in both orientations into microsatellite sequences are found and structure of the region can define the insertion orientation. (Kolesnikov et al., 1996) The suffix short repeat, carrying polyadenylation signals and polyadenylation sites, forms the last exon of ct. The suffix sequence is directly involved in the formation of the last splicing site and the 3' end maturation of ct mRNA. (Tchurikov et al., 1987)
External Crossreferences & Linkouts
Sequence Crossreferences
	DDBJ / EMBL / GenBank • AF363617 AF363618 AF363619 AF363620 AF363621 AF363622 AF363623 AF363624 AF363625 AF363626 AF363628 M54888 M54969 M54970 M54971 M54972 M54973 M54974 X01449 X04342 X04343 X04344 X04345 X04346
Other Crossreferences
Linkouts
Synonyms & Secondary IDs ( 3 )
Reported As
Symbol Synonym	suffix (Smith et al., 2007, Tchurikov and Kretova, 2011, Tchurikov and Kretova, 2007, Kretova et al., 2002, Tchurikov and Kretova, 2003) Suffix (Kretova and Tchurikov, 2005)
Name Synonym	suffix element
Secondary FlyBase IDs
References ( 19 )
Research paper	Tchurikov and Kretova, 2011, PLoS ONE 6(7): e21882 Both piRNA and siRNA Pathways Are Silencing Transcripts of the Suffix Element in the Drosophila melanogaster Germline and Somatic Cells. [FBrf0214474] Smith et al., 2007, Science 316(5831): 1586--1591 The Release 5.1 annotation of Drosophila melanogaster heterochromatin. [FBrf0216199] Tchurikov and Kretova, 2007, PLoS ONE 2(5): e476 Suffix-specific RNAi leads to silencing of F element in Drosophila melanogaster. [FBrf0210284] Kretova and Tchurikov, 2005, Dokl. Biochem. Biophys. 403: 306--309 On the possibility of origin of a short element of Drosophila (suffix) from a related long retroelement (F element). [FBrf0190344] Churikov and Kretova, 2003, Genetika, Moscow 39(2): 300--304 RNA interference is developmentally regulated: analysis of expression of suffix, a short retroelement of Drosophila. [FBrf0167681] Tchurikov and Kretova, 2003, Russ. J. Genet. 39(2): 236--239 RNA interference is developmentally regulated: analysis of expression of suffix, a short retroelement of Drosophila. [FBrf0186743] Kretova et al., 2002, Russ. J. Genet. 38(8): 918--924 Analysis of the suffix short retroelement copies and the encoded protein domain of Drosophila. [FBrf0185725] Kretova et al., 2002, Genetika, Moscow 38(8): 1090--1096 [Analysis of the suffix short retroelement copies and the encoded protein domain of Drosophila.] [FBrf0152046] Churikov et al., 1998, Dokl. Akad. Nauk 360(1): 124--127 Analysis of suffix - short Drosophila retroelement - in the heterochromatin regions. [FBrf0104421] Churikov et al., 1998, Dokl. Biochem. 360(1): 55--58 Analysis of copies of suffix, a short retroelement from Drosophila, in the heterochromatin regions. [FBrf0128259] Churikov, 1996, Tsitol. Genet. 30(1): 14--22 [The role of retroelements in evolution: an analysis of the suffix element from the Drosophila genome.] [FBrf0089617] Kolesnikov et al., 1996, Genetika, Moscow 32(1): 150--153 [Analysis of copies of the suffix element, Drosophila retroposon, produced by PCR amplification of genomic DNA.] [FBrf0087517] Kolesnikov et al., 1995, Dokl. Akad. Nauk 345(3): 410--414 [Suffix - Drosophila retrotransposon has an ancient domain and in both orientations has either regulatory or coding function in nuclei and cytoplasm.] [FBrf0085362] Kolesnikov and Tchurikov, 1991, Genetika, Moscow 27(9): 1673--1677 Izuchenie posledovatel'nostei, gomologichnykh suffiksu iz genoma Drosophila melanogaster v DNK drugikh organizmov. [The study of sequences homologoues to the Drosophila melanogaster suffic elements in DNA of other organisms.] [FBrf0054207] Tchurikov et al., 1987, Genetika, Moscow 23: 1807--1822 Molekuliarno-geneticheskoe izuchenie lokusa cut Drosophila melanogaster. [Molecular genetic study of the cut locus of Drosophila melanogaster.] [FBrf0046469] Tchurikov et al., 1986, EMBO J. 5(9): 2341--2347 The suffix sequence is involved in processing the 3' ends of different mRNAs in Drosophila melanogaster. [FBrf0044231] Ebralidze et al., 1984, Dokl. Akad. Nauk SSSR NS 275: 1508--1510 Primary structure of the suffix - the repeat sequence located at the 3'-ends of different Drosophila melanogaster genes. [FBrf0040760] Ebralidze et al., 1984, Dokl. Biol. Sci. (Translation ed.) 275: 256--259 Primary structure of the suffix - the repeat sequence located at the 3'-ends of different Drosophila melanogaster genes. [FBrf0040761]
DNA/RNA sequence record	Tchurikov, 2001.3.23, GenBank/EMBL/DDBJ: AF363628 Drosophila melanogaster clone A210 SINE suffix and unknown gene, partial cds. [FBrf0136651]