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Gene Dmel\Su(var)3-7

General Information
Symbol	Dmel\Su(var)3-7	Species	D. melanogaster
Name	Suppressor of variegation 3-7	Annotation symbol	CG8599
Feature type	protein_coding_gene	FlyBase ID	FBgn0003598
Gene Model Status	Current	Stock availability	4 publicly available
Also Known As	Suvar(3)7, Su-var(3)7
Genomic Location
Chromosome (arm)	3R	Recombination map	3-50.9
Cytogenetic map	87E3-87E3	Sequence location	3R:9,090,086..9,095,760 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Suppressor of variegation 3-7 is referred to in FlyBase by the symbol Dmel\Su(var)3-7 (CG8599, FBgn0003598). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: protein binding; chromatin binding. There is experimental evidence that it is involved in the biological process: dosage compensation by inactivation of X chromosome; positive regulation of chromatin silencing at centromere. 51 alleles are reported. The phenotypes of these alleles are annotated with: macrochaeta; humeral bristle; sex comb; wing; ommatidium; polytene chromosome chromocenter; prothoracic gland. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: BESS motif; Zinc finger, C2H2-like. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of low expression. Peak expression observed within 00-12 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Little or no expression detected in any larval or adult organs/tissues. Comments on Affy2 ProbeSet: ProbeSet 1626862_at completely aligns to an exonic region of only a subset of 1 of the 2 FlyBase-annotated transcript isoforms of Su(var)3-7. Gene sequence location is 3R:9090086..9095760.
User Contributed Data
	Beta version, feedback welcome
External Summaries
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 87E3-87E3   Limits computationally determined from genome sequence between P{PZ}CtBP03463 and P{lacW}B52s2249&P{lacW}flflL4179
Experimentally Determined Cytological Location
Cytogenetic map Notes References 87E-87E   (determined by in situ hybridisation)   (Reuter et al., 1987) 87E4-87E5   Location based on deficiency mapping. (determined by in situ hybridisation)   (Wustmann et al., 1989)
Experimentally Determined Recombination Data
Location	3-50.9 (Bushey and Locke, 2004)
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\Su(var)3-7 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.47
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Su(var)3-7-RA FBtr0082736  NM_079618   5051   1250 Su(var)3-7-RB FBtr0301657  NM_001170130   4217   1248
Additional Transcript Data & Comments
Reported size (kB)	2.796 (compiled cDNA) (Reuter et al., 1990)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Su(var)3-7-PA   FBpp0082204   140.0   1250   6.39     NP_524342   AAF54918 Su(var)3-7-PB   FBpp0290871   139.8   1248   6.39     NP_001163601   ACZ94898
Additional Polypeptide Data & Comments
Reported size (kDa)	932 (aa) (Reuter et al., 1990)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Zinc finger, C2H2-like (IPR015880) BESS motif (IPR004210)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA439111   AA539640   AA820890   AA949055   AA949494   AE014297 AAF54918   AE014297 ACZ94898   AI518003   AI519367   AI519696   BG638153   BG638421   BG638948   BI168684   BI227615   BI229051   BI229847   BI240427   BI241819   BI242327   BI242566   BI242598   BI362036   BI363922   BI366668   BI372388   BI482254   BI484828   BI486571   BI578277   BT021939   BT128887   BT133434   CK604970   CK604971   CO264749   CO269447   CO281138   CO285695   CO292755   CO293975   CO294729   CO304084   CO304619   CO305060   CO305736   CO340720   EC060985   EC061768   EC065030   EC066475   EC082682   EC086836   EC203475   EC239569   EC247484   EV598373   EV598944   X52187 CAA36434
UniProtKB/Swiss-Prot	P20193
UniProtKB/TrEMBL	E1JIJ9
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism | intense & ubiquitous   (Fisher et al., 2012) embryonic stage 7 -- 8   antennal anlage   (Fisher et al., 2012) Comment:reported as procephalic ectoderm anlage central brain anlage   (Fisher et al., 2012) Comment:reported as procephalic ectoderm anlage dorsal head epidermis anlage   (Fisher et al., 2012) Comment:reported as procephalic ectoderm anlage visual anlage   (Fisher et al., 2012) Comment:reported as procephalic ectoderm anlage organism | intense & ubiquitous   (Fisher et al., 2012) ventral nerve cord primordium   (Fisher et al., 2012) Comment:reported as ventral nerve cord anlage embryonic stage 9 -- 10   antennal primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium central brain primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium visual primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium dorsal head epidermis primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium lateral head epidermis primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium ventral head epidermis primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium ventral nerve cord primordium   (Fisher et al., 2012) embryonic stage 11 -- 12   anterior midgut primordium   (Fisher et al., 2012) central brain primordium   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) posterior midgut primordium   (Fisher et al., 2012) ventral nerve cord primordium   (Fisher et al., 2012) embryonic stage 13 -- 16   embryonic brain   (Fisher et al., 2012) embryonic/larval midgut   (Fisher et al., 2012) organism | faint & ubiquitous   (Fisher et al., 2012) ventral nerve cord   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
immunolocalization Stage Tissue/Position (including subcellular localization) Reference embryonic stage 5   cell   • nucleus (Seum et al., 2002) third instar larval stage   salivary gland   • chromosome, centromeric region (Jaquet et al., 2006) salivary gland   • heterochromatin (Jaquet et al., 2006)
Additional Descriptive Data
Marker for
	chromosome, centromeric region
Subcellular Localization (GO Cellular Component)
CV term Evidence References
centromeric heterochromatin inferred from direct assay (Cleard et al., 1997) nucleus inferred from direct assay (Cleard et al., 1997)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Little or no expression detected in any larval or adult organs/tissues. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    58.625 Larval Midgut    5.7 Larval Hindgut    10.8 Larval Malpighian Tubules    7.5 Larval Fat Body    21.2 Larval Salivary Gland    11.1 Larval Trachea    24.8 Larval Carcass    13.15 Adult Head    13.2 Adult Eye    18.05 Adult Brain    37.6 Adult Thoracic-Abdominal Ganglion    36 Adult Crop    13.6 Adult Midgut    7 Adult Hindgut    12 Adult Malpighian Tubules    10.9 Adult Fat Body    14.4 Adult Salivary Gland    8.1 Adult Heart    15.025 Adult VirginFemale Spermatheca    26.7 Adult InseminatedFemale Spermatheca    23 Adult Ovary    30 Adult Testis    2.9 Adult Male Accessory Gland    15.9 Adult Carcass    16.6 Expression Level Scale  None   Low  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    58.625 Larval Midgut    5.7 Larval Hindgut    10.8 Larval Malpighian Tubules    7.5 Larval Fat Body    21.2 Larval Salivary Gland    11.1 Larval Trachea    24.8 Larval Carcass    13.15 Adult Head    13.2 Adult Eye    18.05 Adult Brain    37.6 Adult Thoracic-Abdominal Ganglion    36 Adult Crop    13.6 Adult Midgut    7 Adult Hindgut    12 Adult Malpighian Tubules    10.9 Adult Fat Body    14.4 Adult Salivary Gland    8.1 Adult Heart    15.025 Adult VirginFemale Spermatheca    26.7 Adult InseminatedFemale Spermatheca    23 Adult Ovary    30 Adult Testis    2.9 Adult Male Accessory Gland    15.9 Adult Carcass    16.6 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    58.625 Larval Midgut    5.7 Larval Hindgut    10.8 Larval Malpighian Tubules    7.5 Larval Fat Body    21.2 Larval Salivary Gland    11.1 Larval Trachea    24.8 Larval Carcass    13.15 Adult Head    13.2 Adult Eye    18.05 Adult Brain    37.6 Adult Thoracic-Abdominal Ganglion    36 Adult Crop    13.6 Adult Midgut    7 Adult Hindgut    12 Adult Malpighian Tubules    10.9 Adult Fat Body    14.4 Adult Salivary Gland    8.1 Adult Heart    15.025 Adult VirginFemale Spermatheca    26.7 Adult InseminatedFemale Spermatheca    23 Adult Ovary    30 Adult Testis    2.9 Adult Male Accessory Gland    15.9 Adult Carcass    16.6 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    58.625 Larval Midgut    5.7 Larval Hindgut    10.8 Larval Malpighian Tubules    7.5 Larval Fat Body    21.2 Larval Salivary Gland    11.1 Larval Trachea    24.8 Larval Carcass    13.15 Adult Head    13.2 Adult Eye    18.05 Adult Brain    37.6 Adult Thoracic-Abdominal Ganglion    36 Adult Crop    13.6 Adult Midgut    7 Adult Hindgut    12 Adult Malpighian Tubules    10.9 Adult Fat Body    14.4 Adult Salivary Gland    8.1 Adult Heart    15.025 Adult VirginFemale Spermatheca    26.7 Adult InseminatedFemale Spermatheca    23 Adult Ovary    30 Adult Testis    2.9 Adult Male Accessory Gland    15.9 Adult Carcass    16.6 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    58.625 Larval Midgut    5.7 Larval Hindgut    10.8 Larval Malpighian Tubules    7.5 Larval Fat Body    21.2 Larval Salivary Gland    11.1 Larval Trachea    24.8 Larval Carcass    13.15 Adult Head    13.2 Adult Eye    18.05 Adult Brain    37.6 Adult Thoracic-Abdominal Ganglion    36 Adult Crop    13.6 Adult Midgut    7 Adult Hindgut    12 Adult Malpighian Tubules    10.9 Adult Fat Body    14.4 Adult Salivary Gland    8.1 Adult Heart    15.025 Adult VirginFemale Spermatheca    26.7 Adult InseminatedFemale Spermatheca    23 Adult Ovary    30 Adult Testis    2.9 Adult Male Accessory Gland    15.9 Adult Carcass    16.6 Expression Level Scale  None   Low  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    58.625 Larval Midgut    5.7 Larval Hindgut    10.8 Larval Malpighian Tubules    7.5 Larval Fat Body    21.2 Larval Salivary Gland    11.1 Larval Trachea    24.8 Larval Carcass    13.15 Adult Head    13.2 Adult Eye    18.05 Adult Brain    37.6 Adult Thoracic-Abdominal Ganglion    36 Adult Crop    13.6 Adult Midgut    7 Adult Hindgut    12 Adult Malpighian Tubules    10.9 Adult Fat Body    14.4 Adult Salivary Gland    8.1 Adult Heart    15.025 Adult VirginFemale Spermatheca    26.7 Adult InseminatedFemale Spermatheca    23 Adult Ovary    30 Adult Testis    2.9 Adult Male Accessory Gland    15.9 Adult Carcass    16.6 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    58.625 Larval Midgut    5.7 Larval Hindgut    10.8 Larval Malpighian Tubules    7.5 Larval Fat Body    21.2 Larval Salivary Gland    11.1 Larval Trachea    24.8 Larval Carcass    13.15 Adult Head    13.2 Adult Eye    18.05 Adult Brain    37.6 Adult Thoracic-Abdominal Ganglion    36 Adult Crop    13.6 Adult Midgut    7 Adult Hindgut    12 Adult Malpighian Tubules    10.9 Adult Fat Body    14.4 Adult Salivary Gland    8.1 Adult Heart    15.025 Adult VirginFemale Spermatheca    26.7 Adult InseminatedFemale Spermatheca    23 Adult Ovary    30 Adult Testis    2.9 Adult Male Accessory Gland    15.9 Adult Carcass    16.6 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    58.625 Larval Midgut    5.7 Larval Hindgut    10.8 Larval Malpighian Tubules    7.5 Larval Fat Body    21.2 Larval Salivary Gland    11.1 Larval Trachea    24.8 Larval Carcass    13.15 Adult Head    13.2 Adult Eye    18.05 Adult Brain    37.6 Adult Thoracic-Abdominal Ganglion    36 Adult Crop    13.6 Adult Midgut    7 Adult Hindgut    12 Adult Malpighian Tubules    10.9 Adult Fat Body    14.4 Adult Salivary Gland    8.1 Adult Heart    15.025 Adult VirginFemale Spermatheca    26.7 Adult InseminatedFemale Spermatheca    23 Adult Ovary    30 Adult Testis    2.9 Adult Male Accessory Gland    15.9 Adult Carcass    16.6 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    13.2   NA  Eye    18.05   NA  Brain    37.6   58.625  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    36   NA  Crop    13.6   5.7  Midgut    7   10.8  Hindgut    12   7.5  Malpighian Tubules    no informative data   21.2  Fat Body    14.4   no informative data  Salivary Gland    8.1   NA  Heart    15.025   24.8  Trachea    NA   NA  VirginFemale Spermatheca    26.7   NA  InseminatedFemale Spermatheca    23   NA  Ovary    30   NA  Testis    2.9   NA  Male Accessory Gland    no informative data   no informative data  Carcass    16.6 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    24 central nervous system, larvae L3    35 central nervous system, pupae P8    18 head, virgin 1-day female    6 head, virgin 4-day female    8 head, virgin 20-day female    5 head, mated 1-day female    8 head, mated 4-day female    8 head, mated 20-day female    6 head, mated 1-day male    10 head, mated 4-day male    10 head, mated 20-day male    12 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    3 digestive system, 4-day adult    8 digestive system, 20-day adult    5 fat body, larvae L3 wandering    4 fat body, white prepupae    8 fat body, pupae P8    11 carcass, larvae L3 wandering    19 carcass, 1-day adult    5 carcass, 4-day adult    9 carcass, 20-day adult    7 ovary, virgin 4-day female    107 ovary, mated 4-day female    115 testis, mated 4-day male    9 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    24 central nervous system, larvae L3  (35) central nervous system, pupae P8    18 head, virgin 1-day female    6 head, virgin 4-day female    8 head, virgin 20-day female    5 head, mated 1-day female    8 head, mated 4-day female    8 head, mated 20-day female    6 head, mated 1-day male    10 head, mated 4-day male    10 head, mated 20-day male    12 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    3 digestive system, 4-day adult    8 digestive system, 20-day adult    5 fat body, larvae L3 wandering    4 fat body, white prepupae    8 fat body, pupae P8    11 carcass, larvae L3 wandering    19 carcass, 1-day adult    5 carcass, 4-day adult    9 carcass, 20-day adult    7 ovary, virgin 4-day female  (107) ovary, mated 4-day female  (115) testis, mated 4-day male    9 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    24 central nervous system, larvae L3    35 central nervous system, pupae P8    18 head, virgin 1-day female    6 head, virgin 4-day female    8 head, virgin 20-day female    5 head, mated 1-day female    8 head, mated 4-day female    8 head, mated 20-day female    6 head, mated 1-day male    10 head, mated 4-day male    10 head, mated 20-day male    12 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    3 digestive system, 4-day adult    8 digestive system, 20-day adult    5 fat body, larvae L3 wandering    4 fat body, white prepupae    8 fat body, pupae P8    11 carcass, larvae L3 wandering    19 carcass, 1-day adult    5 carcass, 4-day adult    9 carcass, 20-day adult    7 ovary, virgin 4-day female  107 ovary, mated 4-day female  (115) testis, mated 4-day male    9 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    24 central nervous system, larvae L3    35 central nervous system, pupae P8    18 head, virgin 1-day female    6 head, virgin 4-day female    8 head, virgin 20-day female    5 head, mated 1-day female    8 head, mated 4-day female    8 head, mated 20-day female    6 head, mated 1-day male    10 head, mated 4-day male    10 head, mated 20-day male    12 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    3 digestive system, 4-day adult    8 digestive system, 20-day adult    5 fat body, larvae L3 wandering    4 fat body, white prepupae    8 fat body, pupae P8    11 carcass, larvae L3 wandering    19 carcass, 1-day adult    5 carcass, 4-day adult    9 carcass, 20-day adult    7 ovary, virgin 4-day female    107 ovary, mated 4-day female    115 testis, mated 4-day male    9 accessory gland, mated 4-day male    5 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    24 central nervous system, larvae L3    35 central nervous system, pupae P8    18 head, virgin 1-day female    6 head, virgin 4-day female    8 head, virgin 20-day female    5 head, mated 1-day female    8 head, mated 4-day female    8 head, mated 20-day female    6 head, mated 1-day male    10 head, mated 4-day male    10 head, mated 20-day male    12 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    3 digestive system, 4-day adult    8 digestive system, 20-day adult    5 fat body, larvae L3 wandering    4 fat body, white prepupae    8 fat body, pupae P8    11 carcass, larvae L3 wandering    19 carcass, 1-day adult    5 carcass, 4-day adult    9 carcass, 20-day adult    7 ovary, virgin 4-day female    107 ovary, mated 4-day female    115 testis, mated 4-day male    9 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    24 central nervous system, larvae L3  (35) central nervous system, pupae P8    18 head, virgin 1-day female    6 head, virgin 4-day female    8 head, virgin 20-day female    5 head, mated 1-day female    8 head, mated 4-day female    8 head, mated 20-day female    6 head, mated 1-day male    10 head, mated 4-day male    10 head, mated 20-day male    12 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    3 digestive system, 4-day adult    8 digestive system, 20-day adult    5 fat body, larvae L3 wandering    4 fat body, white prepupae    8 fat body, pupae P8    11 carcass, larvae L3 wandering    19 carcass, 1-day adult    5 carcass, 4-day adult    9 carcass, 20-day adult    7 ovary, virgin 4-day female  (107) ovary, mated 4-day female  (115) testis, mated 4-day male    9 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    24 central nervous system, larvae L3    35 central nervous system, pupae P8    18 head, virgin 1-day female    6 head, virgin 4-day female    8 head, virgin 20-day female    5 head, mated 1-day female    8 head, mated 4-day female    8 head, mated 20-day female    6 head, mated 1-day male    10 head, mated 4-day male    10 head, mated 20-day male    12 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    3 digestive system, 4-day adult    8 digestive system, 20-day adult    5 fat body, larvae L3 wandering    4 fat body, white prepupae    8 fat body, pupae P8    11 carcass, larvae L3 wandering    19 carcass, 1-day adult    5 carcass, 4-day adult    9 carcass, 20-day adult    7 ovary, virgin 4-day female  107 ovary, mated 4-day female  115 testis, mated 4-day male    9 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    24 central nervous system, larvae L3    35 central nervous system, pupae P8    18 head, virgin 1-day female    6 head, virgin 4-day female    8 head, virgin 20-day female    5 head, mated 1-day female    8 head, mated 4-day female    8 head, mated 20-day female    6 head, mated 1-day male    10 head, mated 4-day male    10 head, mated 20-day male    12 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    3 digestive system, 4-day adult    8 digestive system, 20-day adult    5 fat body, larvae L3 wandering    4 fat body, white prepupae    8 fat body, pupae P8    11 carcass, larvae L3 wandering    19 carcass, 1-day adult    5 carcass, 4-day adult    9 carcass, 20-day adult    7 ovary, virgin 4-day female    107 ovary, mated 4-day female    115 testis, mated 4-day male    9 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of low expression. Peak expression observed within 00-12 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    103 embryo 02-04hr    108 embryo 04-06hr    59 embryo 06-08hr    49 embryo 08-10hr    53 embryo 10-12hr    33 embryo 12-14hr    30 embryo 14-16hr    34 embryo 16-18hr    26 embryo 18-20hr    13 embryo 20-22hr    33 embryo 22-24hr    30 larva L1    6 larva L2    6 larva L3 12hr old    5 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    12 larva L3 puffstage 7-9    12 white prepupae new    13 white prepupae 12hr    16 white prepupae 24hr    19 pupae 2d postWPP    13 pupae 3d postWPP    7 pupae 4d postWPP    5 adult male 01day    6 adult male 05day    8 adult male 30day    8 adult female 01day    25 adult female 05day    52 adult female 30day    52 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (103) embryo 02-04hr  (108) embryo 04-06hr  (59) embryo 06-08hr  (49) embryo 08-10hr  (53) embryo 10-12hr  (33) embryo 12-14hr  (30) embryo 14-16hr  (34) embryo 16-18hr  26 embryo 18-20hr    13 embryo 20-22hr  (33) embryo 22-24hr  (30) larva L1    6 larva L2    6 larva L3 12hr old    5 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    12 larva L3 puffstage 7-9    12 white prepupae new    13 white prepupae 12hr    16 white prepupae 24hr    19 pupae 2d postWPP    13 pupae 3d postWPP    7 pupae 4d postWPP    5 adult male 01day    6 adult male 05day    8 adult male 30day    8 adult female 01day    25 adult female 05day  (52) adult female 30day  (52) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  103 embryo 02-04hr  (108) embryo 04-06hr    59 embryo 06-08hr    49 embryo 08-10hr    53 embryo 10-12hr    33 embryo 12-14hr    30 embryo 14-16hr    34 embryo 16-18hr    26 embryo 18-20hr    13 embryo 20-22hr    33 embryo 22-24hr    30 larva L1    6 larva L2    6 larva L3 12hr old    5 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    12 larva L3 puffstage 7-9    12 white prepupae new    13 white prepupae 12hr    16 white prepupae 24hr    19 pupae 2d postWPP    13 pupae 3d postWPP    7 pupae 4d postWPP    5 adult male 01day    6 adult male 05day    8 adult male 30day    8 adult female 01day    25 adult female 05day    52 adult female 30day    52 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    103 embryo 02-04hr    108 embryo 04-06hr    59 embryo 06-08hr    49 embryo 08-10hr    53 embryo 10-12hr    33 embryo 12-14hr    30 embryo 14-16hr    34 embryo 16-18hr    26 embryo 18-20hr    13 embryo 20-22hr    33 embryo 22-24hr    30 larva L1    6 larva L2    6 larva L3 12hr old    5 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    12 larva L3 puffstage 7-9    12 white prepupae new    13 white prepupae 12hr    16 white prepupae 24hr    19 pupae 2d postWPP    13 pupae 3d postWPP    7 pupae 4d postWPP    5 adult male 01day    6 adult male 05day    8 adult male 30day    8 adult female 01day    25 adult female 05day    52 adult female 30day    52 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    103 embryo 02-04hr    108 embryo 04-06hr    59 embryo 06-08hr    49 embryo 08-10hr    53 embryo 10-12hr    33 embryo 12-14hr    30 embryo 14-16hr    34 embryo 16-18hr    26 embryo 18-20hr    13 embryo 20-22hr    33 embryo 22-24hr    30 larva L1    6 larva L2    6 larva L3 12hr old    5 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    12 larva L3 puffstage 7-9    12 white prepupae new    13 white prepupae 12hr    16 white prepupae 24hr    19 pupae 2d postWPP    13 pupae 3d postWPP    7 pupae 4d postWPP    5 adult male 01day    6 adult male 05day    8 adult male 30day    8 adult female 01day    25 adult female 05day    52 adult female 30day    52 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (103) embryo 02-04hr  (108) embryo 04-06hr  (59) embryo 06-08hr  (49) embryo 08-10hr  (53) embryo 10-12hr  (33) embryo 12-14hr  30 embryo 14-16hr  (34) embryo 16-18hr  26 embryo 18-20hr    13 embryo 20-22hr  (33) embryo 22-24hr  30 larva L1    6 larva L2    6 larva L3 12hr old    5 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    12 larva L3 puffstage 7-9    12 white prepupae new    13 white prepupae 12hr    16 white prepupae 24hr    19 pupae 2d postWPP    13 pupae 3d postWPP    7 pupae 4d postWPP    5 adult male 01day    6 adult male 05day    8 adult male 30day    8 adult female 01day    25 adult female 05day  (52) adult female 30day  (52) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  103 embryo 02-04hr  108 embryo 04-06hr    59 embryo 06-08hr    49 embryo 08-10hr    53 embryo 10-12hr    33 embryo 12-14hr    30 embryo 14-16hr    34 embryo 16-18hr    26 embryo 18-20hr    13 embryo 20-22hr    33 embryo 22-24hr    30 larva L1    6 larva L2    6 larva L3 12hr old    5 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    12 larva L3 puffstage 7-9    12 white prepupae new    13 white prepupae 12hr    16 white prepupae 24hr    19 pupae 2d postWPP    13 pupae 3d postWPP    7 pupae 4d postWPP    5 adult male 01day    6 adult male 05day    8 adult male 30day    8 adult female 01day    25 adult female 05day    52 adult female 30day    52 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    103 embryo 02-04hr    108 embryo 04-06hr    59 embryo 06-08hr    49 embryo 08-10hr    53 embryo 10-12hr    33 embryo 12-14hr    30 embryo 14-16hr    34 embryo 16-18hr    26 embryo 18-20hr    13 embryo 20-22hr    33 embryo 22-24hr    30 larva L1    6 larva L2    6 larva L3 12hr old    5 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    12 larva L3 puffstage 7-9    12 white prepupae new    13 white prepupae 12hr    16 white prepupae 24hr    19 pupae 2d postWPP    13 pupae 3d postWPP    7 pupae 4d postWPP    5 adult male 01day    6 adult male 05day    8 adult male 30day    8 adult female 01day    25 adult female 05day    52 adult female 30day    52 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    14 embryonic 1182-4H    17 embryonic GM2    16 embryonic Kc167    11 embryonic S1    26 embryonic S3    14 leg disc CME L1    18 wing disc CME-W2    14 wing disc ML-DmD8    18 wing disc ML-DmD9    21 wing disc ML-DmD16-c3    26 wing disc ML-DmD21    14 wing disc ML-DmD32    18 haltere disc ML-DmD17-c3    25 eye-antennal disc ML-DmD11    14 antennal disc ML-DmD20-c5    13 mixed discs ML-DmD4-c1    19 CNS ML-DmBG1-c1    20 CNS ML-DmBG2-c2    16 tumorous blood cells mbn2    12 ovary fGS/OSS    51 ovary OSC    35 ovary OSS    22 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    14 embryonic 1182-4H    17 embryonic GM2    16 embryonic Kc167    11 embryonic S1  26 embryonic S3    14 leg disc CME L1    18 wing disc CME-W2    14 wing disc ML-DmD8    18 wing disc ML-DmD9    21 wing disc ML-DmD16-c3  26 wing disc ML-DmD21    14 wing disc ML-DmD32    18 haltere disc ML-DmD17-c3    25 eye-antennal disc ML-DmD11    14 antennal disc ML-DmD20-c5    13 mixed discs ML-DmD4-c1    19 CNS ML-DmBG1-c1    20 CNS ML-DmBG2-c2    16 tumorous blood cells mbn2    12 ovary fGS/OSS  (51) ovary OSC  (35) ovary OSS    22 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    14 embryonic 1182-4H    17 embryonic GM2    16 embryonic Kc167    11 embryonic S1    26 embryonic S3    14 leg disc CME L1    18 wing disc CME-W2    14 wing disc ML-DmD8    18 wing disc ML-DmD9    21 wing disc ML-DmD16-c3    26 wing disc ML-DmD21    14 wing disc ML-DmD32    18 haltere disc ML-DmD17-c3    25 eye-antennal disc ML-DmD11    14 antennal disc ML-DmD20-c5    13 mixed discs ML-DmD4-c1    19 CNS ML-DmBG1-c1    20 CNS ML-DmBG2-c2    16 tumorous blood cells mbn2    12 ovary fGS/OSS    51 ovary OSC    35 ovary OSS    22 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    14 embryonic 1182-4H    17 embryonic GM2    16 embryonic Kc167    11 embryonic S1    26 embryonic S3    14 leg disc CME L1    18 wing disc CME-W2    14 wing disc ML-DmD8    18 wing disc ML-DmD9    21 wing disc ML-DmD16-c3    26 wing disc ML-DmD21    14 wing disc ML-DmD32    18 haltere disc ML-DmD17-c3    25 eye-antennal disc ML-DmD11    14 antennal disc ML-DmD20-c5    13 mixed discs ML-DmD4-c1    19 CNS ML-DmBG1-c1    20 CNS ML-DmBG2-c2    16 tumorous blood cells mbn2    12 ovary fGS/OSS    51 ovary OSC    35 ovary OSS    22 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    14 embryonic 1182-4H    17 embryonic GM2    16 embryonic Kc167    11 embryonic S1    26 embryonic S3    14 leg disc CME L1    18 wing disc CME-W2    14 wing disc ML-DmD8    18 wing disc ML-DmD9    21 wing disc ML-DmD16-c3    26 wing disc ML-DmD21    14 wing disc ML-DmD32    18 haltere disc ML-DmD17-c3    25 eye-antennal disc ML-DmD11    14 antennal disc ML-DmD20-c5    13 mixed discs ML-DmD4-c1    19 CNS ML-DmBG1-c1    20 CNS ML-DmBG2-c2    16 tumorous blood cells mbn2    12 ovary fGS/OSS    51 ovary OSC    35 ovary OSS    22 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    14 embryonic 1182-4H    17 embryonic GM2    16 embryonic Kc167    11 embryonic S1  26 embryonic S3    14 leg disc CME L1    18 wing disc CME-W2    14 wing disc ML-DmD8    18 wing disc ML-DmD9    21 wing disc ML-DmD16-c3  26 wing disc ML-DmD21    14 wing disc ML-DmD32    18 haltere disc ML-DmD17-c3    25 eye-antennal disc ML-DmD11    14 antennal disc ML-DmD20-c5    13 mixed discs ML-DmD4-c1    19 CNS ML-DmBG1-c1    20 CNS ML-DmBG2-c2    16 tumorous blood cells mbn2    12 ovary fGS/OSS  (51) ovary OSC  (35) ovary OSS    22 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    14 embryonic 1182-4H    17 embryonic GM2    16 embryonic Kc167    11 embryonic S1    26 embryonic S3    14 leg disc CME L1    18 wing disc CME-W2    14 wing disc ML-DmD8    18 wing disc ML-DmD9    21 wing disc ML-DmD16-c3    26 wing disc ML-DmD21    14 wing disc ML-DmD32    18 haltere disc ML-DmD17-c3    25 eye-antennal disc ML-DmD11    14 antennal disc ML-DmD20-c5    13 mixed discs ML-DmD4-c1    19 CNS ML-DmBG1-c1    20 CNS ML-DmBG2-c2    16 tumorous blood cells mbn2    12 ovary fGS/OSS    51 ovary OSC    35 ovary OSS    22 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    14 embryonic 1182-4H    17 embryonic GM2    16 embryonic Kc167    11 embryonic S1    26 embryonic S3    14 leg disc CME L1    18 wing disc CME-W2    14 wing disc ML-DmD8    18 wing disc ML-DmD9    21 wing disc ML-DmD16-c3    26 wing disc ML-DmD21    14 wing disc ML-DmD32    18 haltere disc ML-DmD17-c3    25 eye-antennal disc ML-DmD11    14 antennal disc ML-DmD20-c5    13 mixed discs ML-DmD4-c1    19 CNS ML-DmBG1-c1    20 CNS ML-DmBG2-c2    16 tumorous blood cells mbn2    12 ovary fGS/OSS    51 ovary OSC    35 ovary OSS    22 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    30 cold shock, 4-day adult    19 heat shock, 4-day adult    25 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    30 Cadmium 100 mM 48 hrs, 4-day adult    78 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    57 Zinc 5 mM 12 hrs, larvae L3    8 Zinc 4.5 mM 48 hrs, 4-day adult    22 Ethanol 2.5% 3 hrs, larvae L3    63 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    68 Caffeine 25 mg/ml 48 hrs, 4-day adult    35 Paraquat 5 mM 48 hrs, 4-day adult    54 Paraquat 10 mM 48 hrs, 4-day adult    38 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (30) cold shock, 4-day adult    19 heat shock, 4-day adult    25 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult  (30) Cadmium 100 mM 48 hrs, 4-day adult  (78) Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult  (57) Zinc 5 mM 12 hrs, larvae L3    8 Zinc 4.5 mM 48 hrs, 4-day adult    22 Ethanol 2.5% 3 hrs, larvae L3  (63) Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (68) Caffeine 25 mg/ml 48 hrs, 4-day adult  (35) Paraquat 5 mM 48 hrs, 4-day adult  (54) Paraquat 10 mM 48 hrs, 4-day adult  (38) Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    30 cold shock, 4-day adult    19 heat shock, 4-day adult    25 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    30 Cadmium 100 mM 48 hrs, 4-day adult    78 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    57 Zinc 5 mM 12 hrs, larvae L3    8 Zinc 4.5 mM 48 hrs, 4-day adult    22 Ethanol 2.5% 3 hrs, larvae L3    63 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    68 Caffeine 25 mg/ml 48 hrs, 4-day adult    35 Paraquat 5 mM 48 hrs, 4-day adult    54 Paraquat 10 mM 48 hrs, 4-day adult    38 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    30 cold shock, 4-day adult    19 heat shock, 4-day adult    25 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    30 Cadmium 100 mM 48 hrs, 4-day adult    78 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    57 Zinc 5 mM 12 hrs, larvae L3    8 Zinc 4.5 mM 48 hrs, 4-day adult    22 Ethanol 2.5% 3 hrs, larvae L3    63 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    68 Caffeine 25 mg/ml 48 hrs, 4-day adult    35 Paraquat 5 mM 48 hrs, 4-day adult    54 Paraquat 10 mM 48 hrs, 4-day adult    38 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    30 cold shock, 4-day adult    19 heat shock, 4-day adult    25 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    30 Cadmium 100 mM 48 hrs, 4-day adult    78 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    57 Zinc 5 mM 12 hrs, larvae L3    8 Zinc 4.5 mM 48 hrs, 4-day adult    22 Ethanol 2.5% 3 hrs, larvae L3    63 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    68 Caffeine 25 mg/ml 48 hrs, 4-day adult    35 Paraquat 5 mM 48 hrs, 4-day adult    54 Paraquat 10 mM 48 hrs, 4-day adult    38 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  30 cold shock, 4-day adult    19 heat shock, 4-day adult    25 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult  30 Cadmium 100 mM 48 hrs, 4-day adult  (78) Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult  (57) Zinc 5 mM 12 hrs, larvae L3    8 Zinc 4.5 mM 48 hrs, 4-day adult    22 Ethanol 2.5% 3 hrs, larvae L3  (63) Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (68) Caffeine 25 mg/ml 48 hrs, 4-day adult  (35) Paraquat 5 mM 48 hrs, 4-day adult  (54) Paraquat 10 mM 48 hrs, 4-day adult  (38) Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    30 cold shock, 4-day adult    19 heat shock, 4-day adult    25 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    30 Cadmium 100 mM 48 hrs, 4-day adult    78 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    57 Zinc 5 mM 12 hrs, larvae L3    8 Zinc 4.5 mM 48 hrs, 4-day adult    22 Ethanol 2.5% 3 hrs, larvae L3    63 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    68 Caffeine 25 mg/ml 48 hrs, 4-day adult    35 Paraquat 5 mM 48 hrs, 4-day adult    54 Paraquat 10 mM 48 hrs, 4-day adult    38 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    30 cold shock, 4-day adult    19 heat shock, 4-day adult    25 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    30 Cadmium 100 mM 48 hrs, 4-day adult    78 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    57 Zinc 5 mM 12 hrs, larvae L3    8 Zinc 4.5 mM 48 hrs, 4-day adult    22 Ethanol 2.5% 3 hrs, larvae L3    63 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    68 Caffeine 25 mg/ml 48 hrs, 4-day adult    35 Paraquat 5 mM 48 hrs, 4-day adult    54 Paraquat 10 mM 48 hrs, 4-day adult    38 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_17 mE1_20_mRNA_expression_cluster_04
External Data & Images
Linkouts	BDGP expression data • RE27718 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0003598 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG8599-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for Su(var)3-7 Stages(s) 7-8 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal | larval stage | maternal effect, with Su(var)3-77.1A.3'/Su(var)3-77.1A.mid Su(var)3-77.1A.5' lethal | larval stage | maternal effect, with Su(var)3-77.1A.5'/Su(var)3-77.1A.mid Su(var)3-77.1A.3' lethal | larval stage | maternal effect (with Su(var)3-77.1A.3'), with Su(var)3-77.1A.5' Su(var)3-77.1A.mid lethal | larval stage | maternal effect (with Su(var)3-77.1A.5'), with Su(var)3-77.1A.3' Su(var)3-77.1A.mid lethal | larval stage | maternal effect (with Su(var)3-77.1A.mid), with Su(var)3-77.1A.3' Su(var)3-77.1A.5' lethal | larval stage | maternal effect (with Su(var)3-77.1A.mid), with Su(var)3-77.1A.5' Su(var)3-77.1A.3' lethal | larval stage | maternal effect (with Su(var)3-714.3') Su(var)3-714.5' lethal | larval stage | maternal effect (with Su(var)3-714.5') Su(var)3-714.3' lethal | larval stage | recessive | rescuable maternal effect Su(var)3-7P9 lethal | recessive Su(var)3-71 Su(var)3-7P1 Su(var)3-7P2 Su(var)3-7P25 Su(var)3-7P32 Su(var)3-7P43 Su(var)3-7P49 Su(var)3-7P71 lethal | recessive | rescuable maternal effect | second instar larval stage Su(var)3-7R2a8 viable, with Scer\GAL4pnr-MD237 Su(var)3-7GD13981 viable, with Su(var)3-77.1A.3'/Su(var)3-77.1A.mid Su(var)3-77.1A.5' viable, with Su(var)3-77.1A.5'/Su(var)3-77.1A.mid Su(var)3-77.1A.3' viable (with Su(var)3-77.1A.3'), with Su(var)3-77.1A.5' Su(var)3-77.1A.mid viable (with Su(var)3-77.1A.5'), with Su(var)3-77.1A.3' Su(var)3-77.1A.mid viable (with Su(var)3-77.1A.mid), with Su(var)3-77.1A.3' Su(var)3-77.1A.5' viable (with Su(var)3-77.1A.mid), with Su(var)3-77.1A.5' Su(var)3-77.1A.3' viable (with Su(var)3-79.3') Su(var)3-79.5' viable (with Su(var)3-79.5') Su(var)3-79.3' viable (with Su(var)3-714.3') Su(var)3-714.5' viable (with Su(var)3-714.5') Su(var)3-714.3' Sterility Allele fertile (with Su(var)3-79.3') Su(var)3-79.5' fertile (with Su(var)3-79.5') Su(var)3-79.3' Other Phenotypes Allele endomitotic cell cycle defective | larval stage Su(var)3-7R2a8 enhancer of variegation Su(var)3-7+t10.4 enhancer of variegation, with Ab(2;3)Tell-P{Winkelried(-FRT)} Su(var)3-7+t6.5 enhancer of variegation, with Ab(2;3)Tell-P{Winkelried}D Su(var)3-7+t6.5 enhancer of variegation, with Dp(1;f)1187 Su(var)3-7+t6.5 enhancer of variegation, with In(1)wm4 Su(var)3-7+t6.5 enhancer of variegation, with In(1)wm4h Su(var)3-7FL.hs.T:Ivir\HA1 enhancer of variegation, with In(1)wm4h, Scer\GAL4da.G32 Su(var)3-7Scer\UAS.T:Ivir\HA1 enhancer of variegation, with In(2)Heidi-P{Winkelried(-FRT)} Su(var)3-7+t6.5 enhancer of variegation, with In(2)Heidi-P{Winkelried}D Su(var)3-7+t6.5 Su(var)3-7FL.hs.T:Ivir\HA1 enhancer of variegation, with P{hsp26-pt-T}39C-12 Su(var)3-7+t6.5 enhancer of variegation, with Tp(3;Y)BL2 Su(var)3-7+t6.5 enhancer of variegation | dominant, with In(1)wm4h Su(var)3-7hs.PCa Su(var)3-7hs.PCb non-enhancer of variegation, with In(1)wm4h, Scer\GAL4da.G32 Su(var)3-7K839R.Scer\UAS.T:Ivir\HA1 non-enhancer of variegation, with In(2)Heidi-P{Winkelried}D Su(var)3-71-6.hs.T:Ivir\HA1 Su(var)3-7B-Ct.hs.T:Ivir\HA1 Su(var)3-7CT.ΔBoxA-BESS.hs.T:Ivir\HA1 Su(var)3-7FL.ΔBESS.hs.T:Ivir\HA1 Su(var)3-7FL.ΔCT.hs.T:Ivir\HA1 non-suppressor of variegation, with In(1)wm4 Su(var)3-7P25 Su(var)3-7P43 Su(var)3-7P71 non-suppressor of variegation, with In(2)Heidi-P{Winkelried}D Su(var)3-71-6.hs.T:Ivir\HA1 Su(var)3-7B-Ct.hs.T:Ivir\HA1 Su(var)3-7CT.ΔBoxA-BESS.hs.T:Ivir\HA1 Su(var)3-7FL.ΔBESS.hs.T:Ivir\HA1 Su(var)3-7FL.ΔCT.hs.T:Ivir\HA1 suppressor of variegation, with In(1)wm4 Su(var)3-7P9 Su(var)3-7P12 Su(var)3-7P49 suppressor of variegation, with In(1)wm4h, Su(var)3-77.1A.3'/Su(var)3-77.1A.mid Su(var)3-77.1A.5' suppressor of variegation, with In(1)wm4h, Su(var)3-77.1A.5'/Su(var)3-77.1A.mid Su(var)3-77.1A.3' suppressor of variegation, with In(2)Heidi-P{Winkelried}D Su(var)3-74-Ct.hs.T:Ivir\HA1 Su(var)3-75-Ct.hs.T:Ivir\HA1 Su(var)3-76-Ct.hs.T:Ivir\HA1 Su(var)3-77-Ct.hs.T:Ivir\HA1 Su(var)3-7CT.hs.T:Ivir\HA1 Su(var)3-7CT.ΔBoxA.hs.T:Ivir\HA1 Su(var)3-7FL.ΔBoxA.hs.T:Ivir\HA1 Su(var)3-7Δ7-B.hs.T:Ivir\HA1 Su(var)3-7Δ7-Ct.hs.T:Ivir\HA1 suppressor of variegation, with In(2)Heidi-P{Winkelried}D, Su(var)3-77.1A.3'/Su(var)3-77.1A.mid Su(var)3-77.1A.5' suppressor of variegation, with In(2)Heidi-P{Winkelried}D, Su(var)3-77.1A.5'/Su(var)3-77.1A.mid Su(var)3-77.1A.3' suppressor of variegation, with In(2R)bwVDe2, Su(var)3-77.1A.3'/Su(var)3-77.1A.mid Su(var)3-77.1A.5' suppressor of variegation, with In(2R)bwVDe2, Su(var)3-77.1A.5'/Su(var)3-77.1A.mid Su(var)3-77.1A.3' suppressor of variegation, with P{hsp26-pt-T}39C-3 Su(var)3-7P43 suppressor of variegation, with P{hsp26-pt-T}39C-12 Su(var)3-7P12 Su(var)3-7P43 suppressor of variegation, with P{hsp26-pt-T}39C-42 Su(var)3-7P12 Su(var)3-7P43 suppressor of variegation, with P{hsp26-pt-T}118E-10 Su(var)3-7P12 Su(var)3-7P43 suppressor of variegation, with P{hsp26-pt-T}gw39C-33 Su(var)3-7P12 Su(var)3-7P43 suppressor of variegation, with P{hsp26-pt-T}HS-2 Su(var)3-7unspecified suppressor of variegation (with Su(var)3-77.1A.3'), with In(1)wm4h, Su(var)3-77.1A.5' Su(var)3-77.1A.mid suppressor of variegation (with Su(var)3-77.1A.3'), with In(2)Heidi-P{Winkelried}D, Su(var)3-77.1A.5' Su(var)3-77.1A.mid suppressor of variegation (with Su(var)3-77.1A.3'), with In(2R)bwVDe2, Su(var)3-77.1A.5' Su(var)3-77.1A.mid suppressor of variegation (with Su(var)3-77.1A.5'), with In(1)wm4h, Su(var)3-77.1A.3' Su(var)3-77.1A.mid suppressor of variegation (with Su(var)3-77.1A.5'), with In(2)Heidi-P{Winkelried}D, Su(var)3-77.1A.3' Su(var)3-77.1A.mid suppressor of variegation (with Su(var)3-77.1A.5'), with In(2R)bwVDe2, Su(var)3-77.1A.3' Su(var)3-77.1A.mid suppressor of variegation (with Su(var)3-77.1A.mid), with In(1)wm4h, Su(var)3-77.1A.3' Su(var)3-77.1A.5' suppressor of variegation (with Su(var)3-77.1A.mid), with In(1)wm4h, Su(var)3-77.1A.5' Su(var)3-77.1A.3' suppressor of variegation (with Su(var)3-77.1A.mid), with In(2)Heidi-P{Winkelried}D, Su(var)3-77.1A.3' Su(var)3-77.1A.5' suppressor of variegation (with Su(var)3-77.1A.mid), with In(2)Heidi-P{Winkelried}D, Su(var)3-77.1A.5' Su(var)3-77.1A.3' suppressor of variegation (with Su(var)3-77.1A.mid), with In(2R)bwVDe2, Su(var)3-77.1A.3' Su(var)3-77.1A.5' suppressor of variegation (with Su(var)3-77.1A.mid), with In(2R)bwVDe2, Su(var)3-77.1A.5' Su(var)3-77.1A.3' suppressor of variegation (with Su(var)3-79.3'), with In(2)Heidi-P{Winkelried}D Su(var)3-79.5' suppressor of variegation (with Su(var)3-79.3'), with In(2R)bwVDe2 Su(var)3-79.5' suppressor of variegation (with Su(var)3-79.5'), with In(2)Heidi-P{Winkelried}D Su(var)3-79.3' suppressor of variegation (with Su(var)3-79.5'), with In(2R)bwVDe2 Su(var)3-79.3' suppressor of variegation (with Su(var)3-714.3'), with In(1)wm4h Su(var)3-714.5' suppressor of variegation (with Su(var)3-714.3'), with In(2)Heidi-P{Winkelried}D Su(var)3-714.5' suppressor of variegation (with Su(var)3-714.3'), with In(2R)bwVDe2 Su(var)3-714.5' suppressor of variegation (with Su(var)3-714.5'), with In(1)wm4h Su(var)3-714.3' suppressor of variegation (with Su(var)3-714.5'), with In(2)Heidi-P{Winkelried}D Su(var)3-714.3' suppressor of variegation (with Su(var)3-714.5'), with In(2R)bwVDe2 Su(var)3-714.3' suppressor of variegation | dominant, with In(1)wm4h Su(var)3-71 suppressor of variegation | dominant, with P{hsp26-pt-T}39C-12 Su(var)3-71 suppressor of variegation | dominant, with P{hsp26-pt-T}39C-42 Su(var)3-71 suppressor of variegation | dominant, with P{hsp26-pt-T}118E-3 Su(var)3-71 suppressor of variegation | dominant, with P{hsp26-pt-T}118E-10 Su(var)3-71 suppressor of variegation | dominant, with P{hsp26-pt-T}118E-19 Su(var)3-71 suppressor of variegation | dominant, with P{hsp26-pt-T}118E-25-5 Su(var)3-71 suppressor of variegation | dominant, with P{hsp26-pt-T}CG231639C-34 Su(var)3-71 wild-type Su(var)3-7+t6.5 Phenotype manifest in Allele adult cuticle & abdomen (with Su(var)3-79.3') Su(var)3-79.5' adult cuticle & abdomen (with Su(var)3-79.5') Su(var)3-79.3' humeral bristle (with Su(var)3-79.3') Su(var)3-79.5' humeral bristle (with Su(var)3-79.5') Su(var)3-79.3' macrochaeta (with Su(var)3-79.3') Su(var)3-79.5' macrochaeta (with Su(var)3-79.5') Su(var)3-79.3' ommatidium (with Su(var)3-79.3') Su(var)3-79.5' ommatidium (with Su(var)3-79.5') Su(var)3-79.3' polytene chromosome | male, with Su(var)3-77.1A.5'/Su(var)3-77.1A.mid Su(var)3-77.1A.3' polytene chromosome | male (with Su(var)3-77.1A.5'), with Su(var)3-77.1A.3' Su(var)3-77.1A.mid polytene chromosome | male (with Su(var)3-77.1A.mid), with Su(var)3-77.1A.3' Su(var)3-77.1A.5' polytene chromosome | male (with Su(var)3-714.3') Su(var)3-714.5' polytene chromosome | male (with Su(var)3-714.5') Su(var)3-714.3' polytene chromosome chromocenter, with Su(var)3-79.3', Su(var)3-714.5'/Su(var)3-79.5' Su(var)3-714.3' polytene chromosome chromocenter, with Su(var)3-714.3', Su(var)3-714.5'/Su(var)3-79.5' Su(var)3-79.3' polytene chromosome chromocenter (with Su(var)3-79.5'), with Su(var)3-714.3', Su(var)3-79.3' Su(var)3-714.5' polytene chromosome chromocenter (with Su(var)3-714.3') Su(var)3-714.5' polytene chromosome chromocenter (with Su(var)3-714.5') Su(var)3-714.3' polytene chromosome chromocenter (with Su(var)3-714.5'), with Su(var)3-714.3', Su(var)3-79.3' Su(var)3-79.5' prothoracic gland Su(var)3-7R2a8 sex comb (with Su(var)3-79.3') Su(var)3-79.5' sex comb (with Su(var)3-79.5') Su(var)3-79.3' wing (with Su(var)3-79.3') Su(var)3-79.5' wing (with Su(var)3-79.5') Su(var)3-79.3'
Classical Alleles ( 20 )
For All Classical Alleles Show
Allele of Su(var)3-7 Class Mutagen Stocks Known lesion Su(var)3-7DG10405 1 -- Su(var)3-714.3' SCEI endonuclease FLPase ends-in gene targeting 0 Yes Su(var)3-714.5' SCEI endonuclease FLPase ends-in gene targeting 0 Yes Su(var)3-71 X ray 0 -- Su(var)3-77.1A.3' SCEI endonuclease FLPase ends-in gene targeting 0 Yes Su(var)3-77.1A.5' SCEI endonuclease FLPase ends-in gene targeting 0 Yes Su(var)3-77.1A.mid SCEI endonuclease FLPase ends-in gene targeting 0 Yes Su(var)3-79.3' SCEI endonuclease FLPase ends-in gene targeting 0 Yes Su(var)3-79.5' SCEI endonuclease FLPase ends-in gene targeting 0 Yes Su(var)3-7P12 Delta2-3 0 Yes Su(var)3-7P1 Delta2-3 0 Yes Su(var)3-7P25 ethyl methanesulfonate 0 Yes Su(var)3-7P2 Delta2-3 0 Yes Su(var)3-7P32 Delta2-3 0 Yes Su(var)3-7P43 ethyl methanesulfonate 0 Yes Su(var)3-7P49 ethyl methanesulfonate 0 Yes Su(var)3-7P71 ethyl methanesulfonate 0 Yes Su(var)3-7P9 gamma ray 0 Yes Su(var)3-7R2a8 ends-in gene targeting FLPase SCEI endonuclease I-CreI endonuclease 0 Yes Su(var)3-7unspecified 0 --
Alleles Carried on Transgenic Constructs ( 31 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Su(var)3-7 Class Mutagen Stocks Known lesion Su(var)3-7GD13981 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Su(var)3-7GL00281 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Su(var)3-7KK106467 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Su(var)3-7+t10.4 in vitro construct - genomic fragment 0 Yes Su(var)3-7+t6.5 in vitro construct - deletion in vitro construct - genomic fragment 0 Yes Su(var)3-71-6.hs.T:Ivir\HA1 in vitro construct - regulatory fusion in vitro construct - coding region fusion 0 Yes Su(var)3-73.0.Scer\SceI.RS in vitro construct 0 Yes Su(var)3-74-Ct.hs.T:Ivir\HA1 in vitro construct - regulatory fusion in vitro construct - coding region fusion 0 Yes Su(var)3-75-Ct.hs.T:Ivir\HA1 in vitro construct - regulatory fusion in vitro construct - coding region fusion 0 Yes Su(var)3-76-Ct.hs.T:Ivir\HA1 in vitro construct - regulatory fusion in vitro construct - coding region fusion 0 Yes Su(var)3-76CT.Δ7.hs.T:Ivir\HA1 in vitro construct - amino acid replacement 0 Yes Su(var)3-77-B.hs.T:Ivir\HA1 in vitro construct - regulatory fusion in vitro construct - coding region fusion 0 Yes Su(var)3-77-Ct.hs.T:Ivir\HA1 in vitro construct - regulatory fusion in vitro construct - coding region fusion 0 Yes Su(var)3-7B-Ct.hs.T:Ivir\HA1 in vitro construct - regulatory fusion in vitro construct - coding region fusion 0 Yes Su(var)3-7CT.hs.T:Ivir\HA1 in vitro construct - regulatory fusion in vitro construct - coding region fusion 0 Yes Su(var)3-7CT.ΔBoxA-BESS.hs.T:Ivir\HA1 in vitro construct - regulatory fusion in vitro construct - coding region fusion 0 Yes Su(var)3-7CT.ΔBoxA.hs.T:Ivir\HA1 in vitro construct - regulatory fusion in vitro construct - coding region fusion 0 Yes Su(var)3-7FL.hs.T:Ivir\HA1 in vitro construct - regulatory fusion in vitro construct - coding region fusion 0 Yes Su(var)3-7FL.ΔBESS.hs.T:Ivir\HA1 in vitro construct - deletion 0 Yes Su(var)3-7FL.ΔBoxA.hs.T:Ivir\HA1 in vitro construct - deletion 0 Yes Su(var)3-7FL.ΔCT.hs.T:Ivir\HA1 0 Yes Su(var)3-7HH in vitro construct - deletion 0 Yes Su(var)3-7hs.PCa in vitro construct - regulatory fusion 0 Yes Su(var)3-7hs.PCb in vitro construct - regulatory fusion 0 Yes Su(var)3-7K839R.Scer\UAS.T:Ivir\HA1 in vitro construct - regulatory fusion in vitro construct - coding region fusion in vitro construct - amino acid replacement 0 Yes Su(var)3-7NIG.8599R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes Su(var)3-7SBPS in vitro construct - deletion 0 Yes Su(var)3-7Scer\UAS.T:Ivir\HA1 in vitro construct - regulatory fusion in vitro construct - coding region fusion 0 Yes Su(var)3-7SP in vitro construct - deletion 0 Yes Su(var)3-7Δ7-B.hs.T:Ivir\HA1 in vitro construct - regulatory fusion in vitro construct - coding region fusion 0 Yes Su(var)3-7Δ7-Ct.hs.T:Ivir\HA1 in vitro construct - regulatory fusion in vitro construct - coding region fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(3R)615 (McCarron et al., 1994) Df(3R)2515 (McCarron et al., 1994) Df(3R)2519 (McCarron et al., 1994) Df(3R)2520 (McCarron et al., 1994) Df(3R)2525 (McCarron et al., 1994) Df(3R)Ace-HD1 (Seum et al., 2000, Schotta et al., 2002) Df(3R)Exel8158 (Ryder, 2004.4.26) Df(3R)GE41 (Reuter et al., 1987) Df(3R)kar-Sz11 (Reuter et al., 1987) Df(3R)kar-Sz28 (Reuter et al., 1987) Df(3R)l26c (Bushey and Locke, 2004) Df(3R)l26d (Reuter et al., 1987) Df(3R)lC4a (Reuter et al., 1987) Df(3R)ry27 (Bushey and Locke, 2004) Df(3R)ry615 (Bushey and Locke, 2004) Df(3R)Su(var)3-7-P13 (Bushey and Locke, 2004) Df(3R)Su(var)3-7-P47 (Bushey and Locke, 2004)
Duplicated in	Dp(3;3)D7 (Reuter et al., 1987)
Not disrupted in	Df(3R)2521 (McCarron et al., 1994) Df(3R)2522 (McCarron et al., 1994) Df(3R)2523 (McCarron et al., 1994) Df(3R)2524 (McCarron et al., 1994) Df(3R)2526 (McCarron et al., 1994) Df(3R)2527 (McCarron et al., 1994) Df(3R)2528 (McCarron et al., 1994) Df(3R)cu (Reuter et al., 1987) Df(3R)E79 (Reuter et al., 1987) Df(3R)E229 (Reuter et al., 1987) Df(3R)kar1W (Reuter et al., 1987) Df(3R)kar3J (Reuter et al., 1987) Df(3R)kar3l (Reuter et al., 1987) Df(3R)kar3Q (Reuter et al., 1987) Df(3R)kar-D1 (Reuter et al., 1987) Df(3R)kar-H5 (McCarron et al., 1994) Df(3R)kar-Sz8 (Reuter et al., 1987) Df(3R)kar-Sz12 (Reuter et al., 1987) Df(3R)kar-Sz30 (Reuter et al., 1987) Df(3R)kar-Sz37 (Reuter et al., 1987) Df(3R)M-Kx1 (Reuter et al., 1987) Df(3R)MS-31 (Reuter et al., 1987) Df(3R)P-10 (Reuter et al., 1987) Df(3R)P-21 (Reuter et al., 1987) Df(3R)P-29 (Reuter et al., 1987) Df(3R)P-35 (Reuter et al., 1987) Df(3R)P-79 (Reuter et al., 1987) Df(3R)red3l (Reuter et al., 1987) Df(3R)ry614 (Reuter et al., 1987) Df(3R)ry1402 (Reuter et al., 1987) Df(3R)ry1607 (Reuter et al., 1987) Df(3R)T-7 (Reuter et al., 1987) Df(3R)T-10 (Reuter et al., 1987) Df(3R)T-32 (Reuter et al., 1987) Df(3R)T-45 (Reuter et al., 1987)
Not duplicated in	Dp(3;3)D1a (Reuter et al., 1987) Dp(3;3)D2 (Reuter et al., 1987) Dp(3;3)D10 (Reuter et al., 1987) Dp(3;3)D26 (Reuter et al., 1987) Dp(3;3)D45 (Reuter et al., 1987)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data heat-shock construct P{hs-Su(var)3-7.1-6} NA P{hs-Su(var)3-7.4-Ct} NA P{hs-Su(var)3-7.5-Ct} NA P{hs-Su(var)3-7.6CT.Δ7} NA P{hs-Su(var)3-7.6-Ct} NA P{hs-Su(var)3-7.7-B} NA P{hs-Su(var)3-7.7-Ct} NA P{hs-Su(var)3-7.B-Ct} NA P{hs-Su(var)3-7.CT.ΔBoxA} NA P{hs-Su(var)3-7.CT.ΔBoxA-BESS} NA P{hs-Su(var)3-7.CT} NA P{hs-Su(var)3-7.FL.ΔBESS} NA P{hs-Su(var)3-7.FL.ΔBoxA} NA P{hs-Su(var)3-7.FL.ΔCT} NA P{hs-Su(var)3-7.FL} NA P{hs-Su(var)3-7.Δ7-B} NA P{hs-Su(var)3-7.Δ7-Ct} NA P{Su(var)3-7hs.PCa} NA P{Su(var)3-7hs.PCb} NA UAS construct P{GD13981} NA P{KK106467} NA P{NIG.8599R} NA P{TRiP.GL00281} NA P{UAS-3HA-Su(var)3-7.K839R} NA P{UAS-3HA-Su(var)3-7} NA characterization construct P{HH} NA P{RV-RV} NA P{SBPS} NA P{S-S} NA P{Su(var)SP} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions P{wHy}Su(var)3-7DG10405 NA insertion of mobile activating element P{GSV1}GSd419GSd419 NA
Gene Ontology: Function, Process & Cellular Component ( 10 unique terms )
Terms Based on Experimental Evidence ( 6 terms )
Molecular Function
CV term Evidence References
chromatin binding inferred from direct assay (Cleard et al., 1997) protein binding inferred from physical interaction with Su(var)205 (Cleard et al., 1997)
Biological Process
CV term Evidence References
dosage compensation by inactivation of X chromosome inferred from direct assay (Spierer et al., 2008) positive regulation of chromatin silencing at centromere inferred from mutant phenotype (Cleard et al., 1997)
Cellular Component
CV term Evidence References
centromeric heterochromatin inferred from direct assay (Cleard et al., 1997) nucleus inferred from direct assay (Cleard et al., 1997)
Terms Based on Predictions or Assertions ( 5 terms )
Molecular Function
CV term Evidence References
DNA binding inferred from electronic annotation with InterPro:IPR004210 (FlyBase Curators et al., 2004-)
Biological Process ( 0 terms)
Cellular Component
CV term Evidence References
chromosome, centromeric region traceable author statement (Zhimulev and Belyaeva, 2003) heterochromatin traceable author statement (Zhimulev and Belyaeva, 2003) nucleus non-traceable author statement (Swiss-Prot Project Members, 1991.2.1) polytene chromosome chromocenter traceable author statement (Zhimulev and Belyaeva, 2003)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Su(var)3-7 allele Gene References unspecified lt (Delattre et al., 2000) Su(var)205 (Cleard et al., 1997)
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 66711 DroID - A comprehensive database of gene and protein interactions. • FBgn0003598 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 41627
Orthologs
OrthoDB Orthologs (13) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6F1XNF Dipteran inclusive ortholog search No orthologs identified Insect inclusive ortholog search No orthologs identified Arthropod inclusive ortholog search No orthologs identified Metazoa inclusive ortholog search No orthologs identified
Orthologs in Drosophila Species (EOG6F1XNF)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\Su(var)3-7     Drosophila simulans   Dsim\GD18892 Y   Drosophila sechellia   Dsec\GM17656     Drosophila sechellia   Dsec\GM24093 Y   Drosophila erecta   Dere\GG19522 Y   Drosophila yakuba   Dyak\GE26256 Y   Drosophila ananassae   Dana\GF17587 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA26601 Y   Drosophila persimilis   Dper\GL24399 Y   Drosophila willistoni   Dwil\GK22413 Y   Drosophila virilis   Dvir\Su(var)3-7 Y   Drosophila mojavensis   Dmoj\GI24326 Y   Drosophila grimshawi   Dgri\GH18425 Y
Orthologs in non-Drosophila Dipterans (None identified)
No non-Drosophilid orthologies identified
Orthologs in non-Dipteran Insects (None identified)
No non-Dipteran orthologies identified
Orthologs in non-Insect Arthropods (None identified)
No non-Insect Arthropod orthologies identified
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD18892 Drosophila sechellia Dsec\GM24093 Drosophila erecta Dere\GG19522 Drosophila yakuba Dyak\GE26256 Drosophila ananassae Dana\GF17587 Drosophila pseudoobscura pseudoobscura Dpse\GA26601 Drosophila persimilis Dper\GL24399 Drosophila willistoni Dwil\GK22413 Drosophila virilis Dvir\Su(var)3-7 Drosophila mojavensis Dmoj\GI24326 Drosophila grimshawi Dgri\GH18425
Stocks & Reagents
Stocks Listed in FlyBase ( 4 )
Bloomington	35368 y1 sc* v1; P{TRiP.GL00281}attP2 21493 y1 w67c23; P{wHy}Su(var)3-7DG10405
VDRC	v100984 P{KK106467}VIE-260B v28931 w1118; P{GD13981}v28931/TM3
Genomic Clones ( 1 )
	BACR05K08 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 51 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RE18096 RE27718
Other clones	FI20162
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	LD13577 LD24819 LD27805 LD29523 LD37390 LD38928 RE09528 RE24716 RE26751 RE37271 RE38994 RE39627 RE39943 RE39980 RE46489 RE48910 RE52255 RE59338 RE64917 RE67986 RE70019 RE72128
Other clones	31341 39083 75545 78600 104581 146747 160795 194747 CK01.124B.D8 Dmel_neb_009180_0915_2492 Dmel_neb_015594_0949_2873 EK094548 EK140243 EK156040 EK169901 EK200908 EK205256 EK207542 EK243704 EK245309 EK247206 EK249328 EP11215 LD17915 LD39375 UT01580
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0003598 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 41627
Antibody Information
	polyclonal (Riddle et al., 2012)
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments	Complements all lethals in the region except Acej41; Acej41 has a weak dominant variegation suppression effect.
Other Comments
	DNA-protein interactions: genome-wide binding profile assayed for Su(var)3-7 protein in Kc167 cells; see Chromatin_types_NKI collection report. Individual protein-binding experiments listed under "Samples" at GEO_GSE22069 (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE22069). (Filion et al., 2010) The genomic organisation and pattern of expression of the Su(var)3-7 locus have been characterised. (Cleard et al., 1995) Phenotype of wbl is unchanged by Su(var)3-7. (Csink et al., 1994) Su(var)3-7 is a haplo suppressor and a triplo enhancer. The suppressor effect of Su(var)3-9 cannot dominate the enhancer effect displayed by two extra doses of Su(var)3-7. (Tschiersch et al., 1994) Deletion of one wild type copy of Su(var)3-7 reduces In(1)wm4 position effect variegation and duplication of Su(var)3-7 enhances variegation. A 6.5kb EcoRV gene fragment from Su(var)3-7 is capable of enhancing variegation in a dose-dependent manner. (Reuter et al., 1990) Duplications of Su(var)3-7 were found to considerably reduce the haplo-abnormal effect of heterozygous Su(var)3-7 point mutations. (Reuter et al., 1987)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_079618 NM_001170130 RefSeq (Proteins) • NP_524342 NP_001163601 DDBJ / EMBL / GenBank • AAF54918 ACZ94898 BI229847 CAA36434 X52187 Entrez Gene - A searchable database of RefSeq genes. • 41627 UniProtKB/Swiss-Prot • P20193 UniProtKB/TrEMBL • E1JIJ9
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Zinc finger, C2H2-like (IPR015880) BESS motif (IPR004210) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • RE27718
Linkouts
	BioGRID - A database of protein and genetic interactions • 66711 DroID - A comprehensive database of gene and protein interactions. • FBgn0003598 DRSC - Results from RNAi screens. • FBgn0003598 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0003598 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG8599-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0003598 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 41627 Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution • /genebrief/su(var)3-7.htm InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 41627 modMine - Data generated by the modENCODE project. • FBgn0003598
Synonyms & Secondary IDs ( 11 )
Reported As
Symbol Synonym	CG8599 (Keleman et al., 2009.8.5, Ni et al., 2011.7.19) DmSu(var)3-7 (Jaquet et al., 2006) l(3)87El   Su(var)3-7 (Nisha et al., 2008, Bayes and Malik, 2007, Doheny et al., 2008, Haynes et al., 2007, Lam et al., 2005, Ronsseray et al., 2008, Minidorff et al., 2007, Josse et al., 2007, Reo et al., 2010, Kallappagoudar et al., 2010, Abramov et al., 2011, Deng et al., 2010, Johansson et al., 2007, Delattre et al., 2004, Spierer et al., 2005, Cleard and Spierer, 2001, Bazin et al., 2004, Menon and Meller, 2009, Balasov, 2002, de Wit et al., 2008, Spierer et al., 2008, Baig et al., 2010, Prabhakaran and Kelley, 2010, Sakoparnig et al., 2012, Japanese National Institute of Genetics, 2012.5.21) SU(VAR)3-7 (Perrini et al., 2004, Grade et al., 2002, Schotta et al., 2001, Straub and Becker, 2007, Grewal and Elgin, 2007, Demakova et al., 2007, Ronsseray et al., 2007, Ronsseray et al., 2007, Li et al., 2002, Andreyeva et al., 2007, Andreyeva et al., 2005, van Steensel et al., 2010, Spierer et al., 2008, Filion et al., 2010, Demakov et al., 2011) Su(Var)3-7 (Shevelyov et al., 2009, Nie et al., 2009) Su(var)(3)3 (Pirrotta, 1990) Su(var)(3)7 (Karpen, 1994) Suvar(3)7 (Reuter, 1998.12.3, Peterson and Sapienza, 1993, Spierer et al., 1992, Henikoff, 1996, Cleard et al., 1995, Reuter and Spierer, 1992, Chan et al., 1994, Paro, 1990, Reuter et al., 1990, Spradling and Karpen, 1990, Elgin, 1990, Pardue and Hennig, 1990) Su-var(3)7 (Balasov and Makunin, 1996, Wustmann et al., 1989, Reuter et al., 1987, Reuter et al., 1986)
Name Synonym	Suppressor of variegation 3-7 (Baig et al., 2010)
Secondary FlyBase IDs
References ( 121 )
Generate a list of	All references relating to this gene ( 121 )
List References by type	Research paper  ( 60 ) Supplementary material  ( 5 ) Review  ( 22 ) Personal communication to FlyBase  ( 7 ) Abstract  ( 17 ) FlyBase analysis  ( 1 ) DNA/RNA sequence record  ( 2 ) Stock list  ( 1 ) Protein sequence record  ( 1 ) Website  ( 1 ) Curated genome annotation  ( 1 ) Book  ( 1 ) Conference report  ( 1 )
Recent research papers ( 4 )
	Riddle et al., 2012, PLoS Genet. 8(9): e1002954 Enrichment of HP1a on Drosophila Chromosome 4 Genes Creates an Alternate Chromatin Structure Critical for Regulation in this Heterochromatic Domain. [FBrf0219520] Sakoparnig et al., 2012, J. Comput. Biol. 19(2): 126--138 Binding profiles of chromatin-modifying proteins are predictive for transcriptional activity and promoter-proximal pausing. [FBrf0217402] Abramov et al., 2011, Dokl. Biochem. Biophys. 437(1): 72--76 Genetic and molecular analysis of gene trans-inactivation caused by homologous eu-heterochromatic chromosome rearrangement in Drosophila melanogaster. [FBrf0213780] Demakov et al., 2011, BMC Genomics 12: 566 Protein composition of interband regions in polytene and cell line chromosomes of Drosophila melanogaster. [FBrf0216974] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2011 Show reviews ...