A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Gene Dmel\sws

General Information
SymbolDmel\swsSpeciesD. melanogaster
Nameswiss cheeseAnnotation symbolCG2212
Feature typeprotein_coding_geneFlyBase IDFBgn0003656
Gene Model StatusCurrent Stock availability 10 publicly available
Also Known AsolfE
Genomic Location
Chromosome (arm)XRecombination map1-22
Cytogenetic map7D1-7D1Sequence locationX:7,850,853..7,862,269 [-]

Genomic Maps

GBrowse View Help
modENCODE GBrowse
detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
The gene swiss cheese is referred to in FlyBase by the symbol Dmel\sws (CG2212, FBgn0003656). It is a protein_coding_gene from Drosophila melanogaster. An electronic pipeline based on InterPro domains suggests that it has the molecular function: lysophospholipase activity. There is experimental evidence that it is involved in the biological process: membrane lipid metabolic process; phosphatidylcholine metabolic process; cellular membrane organization; sensory perception of smell; neuron apoptosis. 20 alleles are reported. The phenotypes of these alleles are annotated with: cortex of lamina; epithelial glial cell; CNS glial cell; neuropil; eye photoreceptor cell; adult brain. It has 3 annotated transcripts and 3 annotated polypeptides. Protein features are: Acyl transferase/acyl hydrolase/lysophospholipase; Cyclic nucleotide-binding domain; Cyclic nucleotide-binding-like; Lysophospholipase patatin, conserved site; Patatin/Phospholipase A2-related; RmlC-like jelly roll fold. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages, during late pupal stages, in stages of adults of both sexes. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult central nervous system, adult heart, adult fat body, adult female reproductive system, adult testis, adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult eye, larval central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, larval fat body, larval/adult salivary gland, larval trachea, adult male accessory gland, larval carcass. Comments on Affy2 ProbeSet: ProbeSet 1631499_a_at completely aligns to an exonic region common to each of the 3 FlyBase-annotated transcript isoforms of sws. Gene sequence location is X:7850853..7862269.

hide Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
Gene/Allele symbols may differ from current usage
olfE: olfactory-E (J.C. Hall)
Larvae and adults show reduction in responses to benzaldehyde in petri-plate-based and Y-tube olfactometric assays, respectively. In odor-induced-jump assay (using benzaldehyde), mutants jump less than half as often as normal flies. allele: There is one extant allele, olfEx26.
sws: swiss cheese (J.C. Hall)
Isolated in anatomical screen (cf. Heisenberg and Bohl, 1979, Z. Naturforsch. 34: 143-47); many Swiss-cheese-like holes seen in brain sections of adults (similar to phenotype observed in dying drd flies).
hide Recent Updates
Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
Update Feed
Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10
FB2012_01
Sequence features
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
7D1-7D1  
Limits computationally determined from genome sequence between P{EP}EP1243 and P{EP}snEP1217  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
7D1-7D1  
(determined by in situ hybridisation)  
Experimentally Determined Recombination Data
Location
1-22
 
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\sws for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0071128 FBtr0071127 FBtr0071099 FBtr0071126 FBtr0301679 FBtr0301675 FBtr0071125 FBtr0301676 FBtr0071102 FBtr0071101 FBtr0301677 FBtr0301678 FBpp0071080 FBpp0071079 FBpp0071055 FBpp0071078 FBpp0071077 FBpp0290889 FBti0042492 FBti0132376 FBti0132381 FBti0056447 FBti0052909 FBti0035675 FBti0099939 FBti0029772 FBti0131904 FBti0028832 FBti0071953 FBti0011840 FBti0072010
Comments on Gene Model
DGC clone LD36116 appears problematic: incomplete CDS
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0071125
  5571
  1425
FBtr0071126
  1771
  341
FBtr0301675
  5571
  1425
Additional Transcript Data & Comments
Reported size (kB)
5.4, 1.7 (northern blot)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
sws-PA  
FBpp0071077  
160.6  
1425  
7.95  
sws-PB  
FBpp0071078  
38.8  
341  
4.59  
sws-PC  
FBpp0290889  
160.7  
1425  
7.91  
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
northern blot
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hidePolypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hide High-Throughput Expression Data
or
Untitled Document detailed view CG15332-RB CG15332-RA CG15330-RA sws-RB sn-RG sws-RC sws-RA
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

modENCODE Temporal Expression Data for FBgn0003656


   Styles
Linear
Logarithmic
Heatmap
   Scales
max expr for FBgn0003656
Very low expression bin max
Moderate expression bin max
High expression bin max
Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages, during late pupal stages, in stages of adults of both sexes.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No expression (0 - 0)
 
Extremely low expression (1 - 10)
 
Very low expression (11 - 100)
 
Low expression (101 - 400)
 
Moderate expression (401 - 1400)
 
Moderately high expression (1401 - 4000)
 
High expression (4001 - 10000)
 
Very high expression (10001 - 100000)
 
Extremely high expression (100001 - 2000000)

Linear, scaled to maximum FBgn0003656 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 5729
embryo 02-04hr
 
 4290
embryo 04-06hr
 
 2644
embryo 06-08hr
 
 2039
embryo 08-10hr
 
 2027
embryo 10-12hr
 
 1632
embryo 12-14hr
 
 1827
embryo 14-16hr
 
 2077
embryo 16-18hr
 
 1706
embryo 18-20hr
 
 1449
embryo 20-22hr
 
 1729
embryo 22-24hr
 
 1774
larva L1
 
 1193
larva L2
 
 718
larva L3 12hr old
 
 796
larva L3 puffstage 1-2
 
 678
larva L3 puffstage 3-6
 
 1205
larva L3 puffstage 7-9
 
 1245
white prepupae new
 
 1651
white prepupae 12hr
 
 2055
white prepupae 24hr
 
 2175
pupae 2d postWPP
 
 2022
pupae 3d postWPP
 
 1684
pupae 4d postWPP
 
 4349
adult male 01day
 
 3755
adult male 05day
 
 4207
adult male 30day
 
 4210
adult female 01day
 
 3580
adult female 05day
 
 3884
adult female 30day
 
 4070
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
Linear, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (5729)
embryo 02-04hr
 (4290)
embryo 04-06hr
 (2644)
embryo 06-08hr
 (2039)
embryo 08-10hr
 (2027)
embryo 10-12hr
 (1632)
embryo 12-14hr
 (1827)
embryo 14-16hr
 (2077)
embryo 16-18hr
 (1706)
embryo 18-20hr
 (1449)
embryo 20-22hr
 (1729)
embryo 22-24hr
 (1774)
larva L1
 (1193)
larva L2
 (718)
larva L3 12hr old
 (796)
larva L3 puffstage 1-2
 (678)
larva L3 puffstage 3-6
 (1205)
larva L3 puffstage 7-9
 (1245)
white prepupae new
 (1651)
white prepupae 12hr
 (2055)
white prepupae 24hr
 (2175)
pupae 2d postWPP
 (2022)
pupae 3d postWPP
 (1684)
pupae 4d postWPP
 (4349)
adult male 01day
 (3755)
adult male 05day
 (4207)
adult male 30day
 (4210)
adult female 01day
 (3580)
adult female 05day
 (3884)
adult female 30day
 (4070)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (5729)
embryo 02-04hr
 (4290)
embryo 04-06hr
 (2644)
embryo 06-08hr
 (2039)
embryo 08-10hr
 (2027)
embryo 10-12hr
 (1632)
embryo 12-14hr
 (1827)
embryo 14-16hr
 (2077)
embryo 16-18hr
 (1706)
embryo 18-20hr
 1449
embryo 20-22hr
 (1729)
embryo 22-24hr
 (1774)
larva L1
 
 1193
larva L2
 
 718
larva L3 12hr old
 
 796
larva L3 puffstage 1-2
 
 678
larva L3 puffstage 3-6
 
 1205
larva L3 puffstage 7-9
 
 1245
white prepupae new
 (1651)
white prepupae 12hr
 (2055)
white prepupae 24hr
 (2175)
pupae 2d postWPP
 (2022)
pupae 3d postWPP
 (1684)
pupae 4d postWPP
 (4349)
adult male 01day
 (3755)
adult male 05day
 (4207)
adult male 30day
 (4210)
adult female 01day
 (3580)
adult female 05day
 (3884)
adult female 30day
 (4070)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 5729
embryo 02-04hr
 
 4290
embryo 04-06hr
 
 2644
embryo 06-08hr
 
 2039
embryo 08-10hr
 
 2027
embryo 10-12hr
 
 1632
embryo 12-14hr
 
 1827
embryo 14-16hr
 
 2077
embryo 16-18hr
 
 1706
embryo 18-20hr
 
 1449
embryo 20-22hr
 
 1729
embryo 22-24hr
 
 1774
larva L1
 
 1193
larva L2
 
 718
larva L3 12hr old
 
 796
larva L3 puffstage 1-2
 
 678
larva L3 puffstage 3-6
 
 1205
larva L3 puffstage 7-9
 
 1245
white prepupae new
 
 1651
white prepupae 12hr
 
 2055
white prepupae 24hr
 
 2175
pupae 2d postWPP
 
 2022
pupae 3d postWPP
 
 1684
pupae 4d postWPP
 
 4349
adult male 01day
 
 3755
adult male 05day
 
 4207
adult male 30day
 
 4210
adult female 01day
 
 3580
adult female 05day
 
 3884
adult female 30day
 
 4070
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 5729
embryo 02-04hr
 
 4290
embryo 04-06hr
 
 2644
embryo 06-08hr
 
 2039
embryo 08-10hr
 
 2027
embryo 10-12hr
 
 1632
embryo 12-14hr
 
 1827
embryo 14-16hr
 
 2077
embryo 16-18hr
 
 1706
embryo 18-20hr
 
 1449
embryo 20-22hr
 
 1729
embryo 22-24hr
 
 1774
larva L1
 
 1193
larva L2
 
 718
larva L3 12hr old
 
 796
larva L3 puffstage 1-2
 
 678
larva L3 puffstage 3-6
 
 1205
larva L3 puffstage 7-9
 
 1245
white prepupae new
 
 1651
white prepupae 12hr
 
 2055
white prepupae 24hr
 
 2175
pupae 2d postWPP
 
 2022
pupae 3d postWPP
 
 1684
pupae 4d postWPP
 
 4349
adult male 01day
 
 3755
adult male 05day
 
 4207
adult male 30day
 
 4210
adult female 01day
 
 3580
adult female 05day
 
 3884
adult female 30day
 
 4070
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to maximum FBgn0003656 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 5729
embryo 02-04hr
 
 4290
embryo 04-06hr
 
 2644
embryo 06-08hr
 
 2039
embryo 08-10hr
 
 2027
embryo 10-12hr
 
 1632
embryo 12-14hr
 
 1827
embryo 14-16hr
 
 2077
embryo 16-18hr
 
 1706
embryo 18-20hr
 
 1449
embryo 20-22hr
 
 1729
embryo 22-24hr
 
 1774
larva L1
 
 1193
larva L2
 
 718
larva L3 12hr old
 
 796
larva L3 puffstage 1-2
 
 678
larva L3 puffstage 3-6
 
 1205
larva L3 puffstage 7-9
 
 1245
white prepupae new
 
 1651
white prepupae 12hr
 
 2055
white prepupae 24hr
 
 2175
pupae 2d postWPP
 
 2022
pupae 3d postWPP
 
 1684
pupae 4d postWPP
 
 4349
adult male 01day
 
 3755
adult male 05day
 
 4207
adult male 30day
 
 4210
adult female 01day
 
 3580
adult female 05day
 
 3884
adult female 30day
 
 4070
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (5729)
embryo 02-04hr
 (4290)
embryo 04-06hr
 (2644)
embryo 06-08hr
 (2039)
embryo 08-10hr
 (2027)
embryo 10-12hr
 (1632)
embryo 12-14hr
 (1827)
embryo 14-16hr
 (2077)
embryo 16-18hr
 (1706)
embryo 18-20hr
 (1449)
embryo 20-22hr
 (1729)
embryo 22-24hr
 (1774)
larva L1
 (1193)
larva L2
 (718)
larva L3 12hr old
 (796)
larva L3 puffstage 1-2
 (678)
larva L3 puffstage 3-6
 (1205)
larva L3 puffstage 7-9
 (1245)
white prepupae new
 (1651)
white prepupae 12hr
 (2055)
white prepupae 24hr
 (2175)
pupae 2d postWPP
 (2022)
pupae 3d postWPP
 (1684)
pupae 4d postWPP
 (4349)
adult male 01day
 (3755)
adult male 05day
 (4207)
adult male 30day
 (4210)
adult female 01day
 (3580)
adult female 05day
 (3884)
adult female 30day
 (4070)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (5729)
embryo 02-04hr
 (4290)
embryo 04-06hr
 (2644)
embryo 06-08hr
 2039
embryo 08-10hr
 2027
embryo 10-12hr
 1632
embryo 12-14hr
 1827
embryo 14-16hr
 2077
embryo 16-18hr
 1706
embryo 18-20hr
 1449
embryo 20-22hr
 1729
embryo 22-24hr
 1774
larva L1
 
 1193
larva L2
 
 718
larva L3 12hr old
 
 796
larva L3 puffstage 1-2
 
 678
larva L3 puffstage 3-6
 
 1205
larva L3 puffstage 7-9
 
 1245
white prepupae new
 1651
white prepupae 12hr
 2055
white prepupae 24hr
 2175
pupae 2d postWPP
 2022
pupae 3d postWPP
 1684
pupae 4d postWPP
 (4349)
adult male 01day
 (3755)
adult male 05day
 (4207)
adult male 30day
 (4210)
adult female 01day
 (3580)
adult female 05day
 (3884)
adult female 30day
 (4070)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 5729
embryo 02-04hr
 
 4290
embryo 04-06hr
 
 2644
embryo 06-08hr
 
 2039
embryo 08-10hr
 
 2027
embryo 10-12hr
 
 1632
embryo 12-14hr
 
 1827
embryo 14-16hr
 
 2077
embryo 16-18hr
 
 1706
embryo 18-20hr
 
 1449
embryo 20-22hr
 
 1729
embryo 22-24hr
 
 1774
larva L1
 
 1193
larva L2
 
 718
larva L3 12hr old
 
 796
larva L3 puffstage 1-2
 
 678
larva L3 puffstage 3-6
 
 1205
larva L3 puffstage 7-9
 
 1245
white prepupae new
 
 1651
white prepupae 12hr
 
 2055
white prepupae 24hr
 
 2175
pupae 2d postWPP
 
 2022
pupae 3d postWPP
 
 1684
pupae 4d postWPP
 
 4349
adult male 01day
 
 3755
adult male 05day
 
 4207
adult male 30day
 
 4210
adult female 01day
 
 3580
adult female 05day
 
 3884
adult female 30day
 
 4070
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 5729
embryo 02-04hr
 
 4290
embryo 04-06hr
 
 2644
embryo 06-08hr
 
 2039
embryo 08-10hr
 
 2027
embryo 10-12hr
 
 1632
embryo 12-14hr
 
 1827
embryo 14-16hr
 
 2077
embryo 16-18hr
 
 1706
embryo 18-20hr
 
 1449
embryo 20-22hr
 
 1729
embryo 22-24hr
 
 1774
larva L1
 
 1193
larva L2
 
 718
larva L3 12hr old
 
 796
larva L3 puffstage 1-2
 
 678
larva L3 puffstage 3-6
 
 1205
larva L3 puffstage 7-9
 
 1245
white prepupae new
 
 1651
white prepupae 12hr
 
 2055
white prepupae 24hr
 
 2175
pupae 2d postWPP
 
 2022
pupae 3d postWPP
 
 1684
pupae 4d postWPP
 
 4349
adult male 01day
 
 3755
adult male 05day
 
 4207
adult male 30day
 
 4210
adult female 01day
 
 3580
adult female 05day
 
 3884
adult female 30day
 
 4070
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

FlyAtlas Anatomical Expression Data for FBgn0003656


   Styles
Linear
Logarithmic
Heatmap
Back-to-back
   Scales
max expr for FBgn0003656
Moderate expression bin max
High level expression bin max
Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult central nervous system, adult heart, adult fat body, adult female reproductive system, adult testis, adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult eye, larval central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, larval fat body, larval/adult salivary gland, larval trachea, adult male accessory gland, larval carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (1000 - 25000)

Linear, scaled to maximum FBgn0003656 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 407.025
Larval Midgut
 
 232.5
Larval Hindgut
 
 243.6
Larval Malpighian Tubules
 
 183.4
Larval Fat Body
 
 271.2
Larval Salivary Gland
 
 107.1
Larval Trachea
 
 176.075
Larval Carcass
 
 188.875
Adult Head
 
 586
Adult Eye
 
 390.025
Adult Brain
 
 880
Adult Thoracic-Abdominal Ganglion
 
 1067.9
Adult Crop
 
 231.1
Adult Midgut
 
 236.3
Adult Hindgut
 
 204.2
Adult Malpighian Tubules
 
 244.8
Adult Fat Body
 
 1188.3
Adult Salivary Gland
 
 152.3
Adult Heart
 
 712.5
Adult VirginFemale Spermatheca
 
 728.7
Adult InseminatedFemale Spermatheca
 
 613.5
Adult Ovary
 
 793.5
Adult Testis
 
 816.2
Adult Male Accessory Gland
 
 239
Adult Carcass
 
 721.5
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 407.025
Larval Midgut
 
 232.5
Larval Hindgut
 
 243.6
Larval Malpighian Tubules
 
 183.4
Larval Fat Body
 
 271.2
Larval Salivary Gland
 
 107.1
Larval Trachea
 
 176.075
Larval Carcass
 
 188.875
Adult Head
 (586)
Adult Eye
 
 390.025
Adult Brain
 (880)
Adult Thoracic-Abdominal Ganglion
 (1067.9)
Adult Crop
 
 231.1
Adult Midgut
 
 236.3
Adult Hindgut
 
 204.2
Adult Malpighian Tubules
 
 244.8
Adult Fat Body
 (1188.3)
Adult Salivary Gland
 
 152.3
Adult Heart
 (712.5)
Adult VirginFemale Spermatheca
 (728.7)
Adult InseminatedFemale Spermatheca
 (613.5)
Adult Ovary
 (793.5)
Adult Testis
 (816.2)
Adult Male Accessory Gland
 
 239
Adult Carcass
 (721.5)
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 407.025
Larval Midgut
 
 232.5
Larval Hindgut
 
 243.6
Larval Malpighian Tubules
 
 183.4
Larval Fat Body
 
 271.2
Larval Salivary Gland
 
 107.1
Larval Trachea
 
 176.075
Larval Carcass
 
 188.875
Adult Head
 
 586
Adult Eye
 
 390.025
Adult Brain
 
 880
Adult Thoracic-Abdominal Ganglion
 1067.9
Adult Crop
 
 231.1
Adult Midgut
 
 236.3
Adult Hindgut
 
 204.2
Adult Malpighian Tubules
 
 244.8
Adult Fat Body
 (1188.3)
Adult Salivary Gland
 
 152.3
Adult Heart
 
 712.5
Adult VirginFemale Spermatheca
 
 728.7
Adult InseminatedFemale Spermatheca
 
 613.5
Adult Ovary
 
 793.5
Adult Testis
 
 816.2
Adult Male Accessory Gland
 
 239
Adult Carcass
 
 721.5
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 407.025
Larval Midgut
 
 232.5
Larval Hindgut
 
 243.6
Larval Malpighian Tubules
 
 183.4
Larval Fat Body
 
 271.2
Larval Salivary Gland
 
 107.1
Larval Trachea
 
 176.075
Larval Carcass
 
 188.875
Adult Head
 
 586
Adult Eye
 
 390.025
Adult Brain
 
 880
Adult Thoracic-Abdominal Ganglion
 
 1067.9
Adult Crop
 
 231.1
Adult Midgut
 
 236.3
Adult Hindgut
 
 204.2
Adult Malpighian Tubules
 
 244.8
Adult Fat Body
 
 1188.3
Adult Salivary Gland
 
 152.3
Adult Heart
 
 712.5
Adult VirginFemale Spermatheca
 
 728.7
Adult InseminatedFemale Spermatheca
 
 613.5
Adult Ovary
 
 793.5
Adult Testis
 
 816.2
Adult Male Accessory Gland
 
 239
Adult Carcass
 
 721.5
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to maximum FBgn0003656 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 407.025
Larval Midgut
 
 232.5
Larval Hindgut
 
 243.6
Larval Malpighian Tubules
 
 183.4
Larval Fat Body
 
 271.2
Larval Salivary Gland
 
 107.1
Larval Trachea
 
 176.075
Larval Carcass
 
 188.875
Adult Head
 
 586
Adult Eye
 
 390.025
Adult Brain
 
 880
Adult Thoracic-Abdominal Ganglion
 
 1067.9
Adult Crop
 
 231.1
Adult Midgut
 
 236.3
Adult Hindgut
 
 204.2
Adult Malpighian Tubules
 
 244.8
Adult Fat Body
 
 1188.3
Adult Salivary Gland
 
 152.3
Adult Heart
 
 712.5
Adult VirginFemale Spermatheca
 
 728.7
Adult InseminatedFemale Spermatheca
 
 613.5
Adult Ovary
 
 793.5
Adult Testis
 
 816.2
Adult Male Accessory Gland
 
 239
Adult Carcass
 
 721.5
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 407.025
Larval Midgut
 
 232.5
Larval Hindgut
 
 243.6
Larval Malpighian Tubules
 
 183.4
Larval Fat Body
 
 271.2
Larval Salivary Gland
 
 107.1
Larval Trachea
 
 176.075
Larval Carcass
 
 188.875
Adult Head
 586
Adult Eye
 
 390.025
Adult Brain
 (880)
Adult Thoracic-Abdominal Ganglion
 (1067.9)
Adult Crop
 
 231.1
Adult Midgut
 
 236.3
Adult Hindgut
 
 204.2
Adult Malpighian Tubules
 
 244.8
Adult Fat Body
 (1188.3)
Adult Salivary Gland
 
 152.3
Adult Heart
 712.5
Adult VirginFemale Spermatheca
 728.7
Adult InseminatedFemale Spermatheca
 613.5
Adult Ovary
 793.5
Adult Testis
 (816.2)
Adult Male Accessory Gland
 
 239
Adult Carcass
 721.5
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 407.025
Larval Midgut
 
 232.5
Larval Hindgut
 
 243.6
Larval Malpighian Tubules
 
 183.4
Larval Fat Body
 
 271.2
Larval Salivary Gland
 
 107.1
Larval Trachea
 
 176.075
Larval Carcass
 
 188.875
Adult Head
 
 586
Adult Eye
 
 390.025
Adult Brain
 
 880
Adult Thoracic-Abdominal Ganglion
 1067.9
Adult Crop
 
 231.1
Adult Midgut
 
 236.3
Adult Hindgut
 
 204.2
Adult Malpighian Tubules
 
 244.8
Adult Fat Body
 1188.3
Adult Salivary Gland
 
 152.3
Adult Heart
 
 712.5
Adult VirginFemale Spermatheca
 
 728.7
Adult InseminatedFemale Spermatheca
 
 613.5
Adult Ovary
 
 793.5
Adult Testis
 
 816.2
Adult Male Accessory Gland
 
 239
Adult Carcass
 
 721.5
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 407.025
Larval Midgut
 
 232.5
Larval Hindgut
 
 243.6
Larval Malpighian Tubules
 
 183.4
Larval Fat Body
 
 271.2
Larval Salivary Gland
 
 107.1
Larval Trachea
 
 176.075
Larval Carcass
 
 188.875
Adult Head
 
 586
Adult Eye
 
 390.025
Adult Brain
 
 880
Adult Thoracic-Abdominal Ganglion
 
 1067.9
Adult Crop
 
 231.1
Adult Midgut
 
 236.3
Adult Hindgut
 
 204.2
Adult Malpighian Tubules
 
 244.8
Adult Fat Body
 
 1188.3
Adult Salivary Gland
 
 152.3
Adult Heart
 
 712.5
Adult VirginFemale Spermatheca
 
 728.7
Adult InseminatedFemale Spermatheca
 
 613.5
Adult Ovary
 
 793.5
Adult Testis
 
 816.2
Adult Male Accessory Gland
 
 239
Adult Carcass
 
 721.5
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body
 
 
Adult Salivary Gland
 
 
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass
 
 

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 586
 
NA 
Eye
 
 390.025
 
NA 
Brain
 
 880
 
407.025 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 1067.9
 
NA 
Crop
 
 231.1
 
232.5 
Midgut
 
 236.3
 
243.6 
Hindgut
 
 204.2
 
183.4 
Malpighian Tubules
 
 244.8
 
271.2 
Fat Body
 
 1188.3
 
107.1 
Salivary Gland
 
 152.3
 
NA 
Heart
 
 712.5
 
176.075 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 728.7
 
NA 
InseminatedFemale Spermatheca
 
 613.5
 
NA 
Ovary
 
 793.5
 
NA 
Testis
 
 816.2
 
NA 
Male Accessory Gland
 
 239
 
188.875 
Carcass
 
 721.5

modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
hide Classical Alleles ( 15 )
For All Classical Alleles Show

Allele of swsClassMutagenStocksKnown lesion
swsolfE-x26amorphic allele - genetic evidence1 --
sws4
1 Yes
swsd076051 --
swsf063751 --
swsG175211 --
swsG176141 --
swsG9831 --
swsNP4072
1 --
sws10 Yes
sws20 --
sws30 --
sws5
0 Yes
sws6
0 --
swsCC017110 Yes
swsunspecified
0 --
hide Alleles Carried on Transgenic Constructs ( 5 )
For All Alleles Carried on Transgenic Constructs Show

Allele of swsClassMutagenStocksKnown lesion
swsGD32771 Yes
swsJF034281 Yes
swsolfE-E20 Yes
swsS985D.Scer\UAS0 Yes
swsScer\UAS.cMa0 Yes
hide Aneuploid Aberrations
Disrupted in
Duplicated in
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
characterization construct
Insertions
Type of insertions
Name
Expression data
insertion of enhancer trap binary system
miscellaneous insertions
insertion of mobile activating element
hide Gene Ontology: Function, Process & Cellular Component ( 7 unique terms )
hide Terms Based on Experimental Evidence ( 5 terms )
Molecular Function ( 0 terms)
Biological Process
CV term
References
inferred from mutant phenotype
Cellular Component ( 0 terms)
hide Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function
CV term
References
Biological Process
CV term
References
Cellular Component ( 0 terms)
hide Sequence Ontology: Class of Gene
hide Interactions & Pathways
hide Summary of Physical Interactions
Protein-protein
Interacting group
Assay
References
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
sws allele
Gene
References
hide External Data
Linkouts
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs
Linkouts
InParanoid A subset of ortholog calls from InParanoid.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 10 )
Bloomington
Harvard
Kyoto
VDRC
hide Genomic Clones ( 1 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 55 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
hide RNAi & Array Information
Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
hide Antibody Information
hide Other Information
hide Discoverer
hide Etymology
hide Identification
hide Relationship to Other Genes
Source for database identity of
Source for identity of: sws CG2212
Source for database merge of
Additional comments
complements olfA, olfB and olfF.
 
hide Other Comments
sws is essential for membrane lipid homeostasis and cell survival in both neurons and glia.
sws mutants are characterised by progressive degeneration of the adult nervous system, glial hyperwrapping, and neuronal apoptosis.
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Linkouts
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InParanoid A subset of ortholog calls from InParanoid.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Synonyms & Secondary IDs ( 11 )
Reported As
Symbol Synonym
Name Synonym
olfactory E
 
Secondary FlyBase IDs
  • FBgn0004059
hide References ( 49 )
Generate a list of
List References by type
hide Recent research papers ( 1 )
Pospisilik et al., 2010, Cell 140(1): 148--160
Drosophila genome-wide obesity screen reveals hedgehog as a determinant of brown versus white adipose cell fate. [FBrf0212676]
hide Recent reviews (0)
All reviews listed in FlyBase were published before 2010