A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Gene Dmel\ted

General Information
SymbolDmel\tedSpeciesD. melanogaster
NametrappedAnnotation symbol
Feature typegeneFlyBase IDFBgn0003680
Gene Model StatusUnannotated Stock availability 1 publicly available
Genomic Location
Chromosome (arm)Recombination map3-[47.5]
Cytogenetic map84C5-84D1Sequence location
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Automatically generated summary

See sections below for more information
The gene trapped is referred to in FlyBase by the symbol Dmel\ted (FBgn0003680). It is a gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 5 alleles are reported. No phenotypic data is available. It has no annotated transcripts. Gene has not been localized to the genome sequence.

User Contributed Data
hide Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
Gene/Allele symbols may differ from current usage
ted: trapped
Homozygous lethal; homozygotes attempt to eclose but cannot break the operculum seams. Rescue of fully viable and fertile adults can be effected by dissection from the puparium.
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Description
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This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
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hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
84C5-84D1  
Left limit from complementation mapping against In(3R)Antp73b (citation unavailable) Right limit from complementation mapping relative to Gld (citation unavailable)  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
Experimentally Determined Recombination Data
Location
3-[47.5]
 
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
X07361
 
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Type
Symbol & Location
Additional Notes
References
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Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
hide Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term
Evidence
References
hide Expression Deduced from Reporters
hide High-Throughput Expression Data
Associated Tools
Reference
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
hide FlyAtlas Anatomy Microarray
hide modENCODE Anatomy RNA-Seq
hide modENCODE Development RNA-Seq
hide modENCODE Cell Lines RNA-Seq
hide modENCODE Treatments RNA-Seq
hide Expression Clusters
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Linkouts
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
lethal | pharate adult stage
lethal | recessive
Phenotype manifest in
Allele
hide Classical Alleles ( 5 )
For All Classical Alleles Show

Allele of tedClassMutagenStocksKnown lesion
ted11 --
ted20 --
ted30 --
ted40 --
ted50 --
hide Alleles Carried on Transgenic Constructs ( 0 )
For All Alleles Carried on Transgenic Constructs Show

Allele of tedClassMutagenStocksKnown lesion
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Disrupted in
(Lewis et al., 1980)
(Cavener et al., 1986)
(Cavener et al., 1986, Baker et al., 1991)
(Cavener et al., 1986)
Not disrupted in
(Cavener et al., 1986)
(Cavener et al., 1986)
(Cavener et al., 1986)
(Baker et al., 1991)
(Cavener et al., 1986)
(Cavener et al., 1986)
(Cavener et al., 1986)
(Cavener et al., 1986)
(Cavener et al., 1986)
(Cavener et al., 1986)
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
Insertions
Type of insertions
Name
Expression data
hide Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
hide Terms Based on Experimental Evidence ( 0 terms )
hide Terms Based on Predictions or Assertions ( 0 terms )
hide Sequence Ontology: Class of Gene
gene
 
hide Interactions & Pathways
hide Summary of Physical Interactions
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
ted allele
Gene
References
hide External Data
Linkouts
hide Orthologs
hide OrthoDB Orthologs (0) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
OrthoDB orthology group searches
(Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288)
Drosophila inclusive ortholog search
No orthologs identified
Dipteran inclusive ortholog search
No orthologs identified
Insect inclusive ortholog search
No orthologs identified
Arthropod inclusive ortholog search
No orthologs identified
Metazoa inclusive ortholog search
No orthologs identified
Orthologs in Drosophila Species (None identified)
No orthologies identified
Orthologs in non-Drosophila Dipterans (None identified)
No non-Drosophilid orthologies identified
Orthologs in non-Dipteran Insects (None identified)
No non-Dipteran orthologies identified
Orthologs in non-Insect Arthropods (None identified)
No non-Insect Arthropod orthologies identified
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
hide Human Orthologs (0)
Gene
OMIM
HGNC
hideAAA Orthologs (0) based on analysis using Dmel annotation version 4.3
No orthologs identified
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 1 )
Bloomington
2435
ted1 pp cu1/TM3, Sb1 Ser1
hide Genomic Clones ( 0 )
hide cDNA Clones ( 0 )
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
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Linkouts
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hide Etymology
hide Identification
hide Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
The rescuable mutant phenotype is the same as that observed in Gld null mutants (Cavener and MacIntyre, 1983).
 
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hide External Crossreferences & Linkouts
Sequence Crossreferences
DDBJ / EMBL / GenBank
•
Other Crossreferences
Linkouts
hide Synonyms & Secondary IDs ( 3 )
Reported As
Symbol Synonym
l(3)84Cf
 
ted
 
Name Synonym
trapped
 
Secondary FlyBase IDs
hide References ( 7 )
Research paper
Baker et al., 1991, Genetics 127: 125--138
The doublesex locus of Drosophila melanogaster and its flanking regions: a cytogenetic analysis. [FBrf0054129]
Cavener et al., 1986, Genetics 114: 111--123
A rehabilitation of the genetic map of the 84B-D region in Drosophila melanogaster. [FBrf0044420]
Cavener et al., 1986, EMBO J. 5: 2939--2948
Isolation of the eclosion gene cluster and the developmental expression of the Gld gene in Drosophila melanogaster. [FBrf0044238]
Cavener and MacIntyre, 1983, Proc. Natl. Acad. Sci. U.S.A. 80: 6286--6288
Biphasic expression and function of glucose dehydrogenase in Drosophila melanogaster. [FBrf0040139]
Lewis et al., 1980, Genetics 95(2): 367--381
Genetic analysis of the Antennapedia gene complex (ANT-C) and adjacent chromosomal regions of Drosophila melanogaster. [FBrf0034853]
Personal communication to FlyBase
Bayraktaroglu, 2000.11.2, Current list of possibly CG-able known genes.
Current list of possibly CG-able known genes. [FBrf0131225]
Book
Lindsley and Zimm, 1992, The Genome of Drosophila melanogaster.
The Genome of Drosophila melanogaster. [FBrf0066905]