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Gene Dmel\trk

General Information
Symbol	Dmel\trk	Species	D. melanogaster
Name	trunk	Annotation symbol	CG5619
Feature type	protein_coding_gene	FlyBase ID	FBgn0003751
Gene Model Status	Current	Stock availability	4 publicly available
Also Known As	fs(2)trunk
Genomic Location
Chromosome (arm)	2L	Recombination map	2-36
Cytogenetic map	31B1-31B1	Sequence location	2L:10,271,443..10,272,324 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene trunk is referred to in FlyBase by the symbol Dmel\trk (CG5619, FBgn0003751). It is a protein_coding_gene from Drosophila melanogaster. It is reported to have molecular function: torso binding. There is experimental evidence that it is involved in the biological process: torso signaling pathway; terminal region determination. 24 alleles are reported. The phenotypes of these alleles are annotated with: multicellular structure; anatomical structure; organ system; epithelial furrow; organ system subdivision; larval abdominal segment; abdominal segment; integumentary specialisation; portion of tissue; abdominal segment 10; spiracle. It has one annotated transcript and one annotated polypeptide. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of very low expression. Peak expression observed within 00-06 hour embryonic stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: Little or no expression detected in any larval or adult organs/tissues. Comments on Affy2 ProbeSet: ProbeSet 1623731_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of trk. Gene sequence location is 2L:10271443..10272324.
User Contributed Data
	Beta version, feedback welcome
External Summaries
Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
Gene/Allele symbols may differ from current usage	trk: trunk (T. Schupbach) Maternal-effect lethal; embryos from homozygous mothers lack anterior-most head structures and structures posterior to the seventh abdominal segment. At gastrulation cephalic furrow is shifted toward anterior and the germband extends all the way to the posterior end. During cellularization at the blastoderm stage a funnel of yolk free cytoplasm containing a small number of nuclei (between 10 and 30) forms at the posterior pole of the embryos extending from the egg periphery to the inner yolk mass. Analysis of germline clones indicates that the mutation is germline autonomous (Schupbach and Wieschaus, 1986, Dev. Biol. 113: 443-48).
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 31B1-31B1   Limits computationally determined from genome sequence between P{lacW}me31Bk06607 and P{PZ}nmd08774
Experimentally Determined Cytological Location
Cytogenetic map Notes References 31B-31C   (determined by in situ hybridisation)   (Casanova et al., 1995)
Experimentally Determined Recombination Data
Location	2-36 (Schupbach and Wieschaus, 1989)
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\trk for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.46
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) trk-RA FBtr0080078  NM_057419   882   235
Additional Transcript Data & Comments
Reported size (kB)	0.8 (northern blot) (Casanova et al., 1995)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein trk-PA   FBpp0079667   27.4   235   8.25     NP_476767   AAF52896
Additional Polypeptide Data & Comments
Reported size (kDa)	226 (aa) (Casanova et al., 1995)
Comments
External Data
Linkouts
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014134 AAF52896   AC005454   U41064 AAC46953
UniProtKB/Swiss-Prot	Q24155
UniProtKB/TrEMBL
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 4   organism | ubiquitous   (Casanova et al., 1995) Comment:reference states 0-2 hr AEL adult stage & oogenesis   nurse cell   (Casanova et al., 1995)
Additional Descriptive Data
	trk transcripts are present in nurse cells but not follicle cells during oogenesis and are ubiquitous in early embryos. (Casanova et al., 1995)
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Little or no expression detected in any larval or adult organs/tissues. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    5.9 Larval Midgut    1.3 Larval Hindgut    7.1 Larval Malpighian Tubules    6.7 Larval Fat Body    4.5 Larval Salivary Gland    3 Larval Trachea    3.95 Larval Carcass    4.275 Adult Head    13.3 Adult Eye    11.975 Adult Brain    10.4 Adult Thoracic-Abdominal Ganglion    14.2 Adult Crop    2.7 Adult Midgut    3.8 Adult Hindgut    13.4 Adult Malpighian Tubules    6.7 Adult Fat Body    5 Adult Salivary Gland    5.2 Adult Heart    15.1 Adult VirginFemale Spermatheca    9.2 Adult InseminatedFemale Spermatheca    3.4 Adult Ovary    90.9 Adult Testis    5.5 Adult Male Accessory Gland    11.9 Adult Carcass    6.1 Expression Level Scale  None   Low  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    5.9 Larval Midgut    1.3 Larval Hindgut    7.1 Larval Malpighian Tubules    6.7 Larval Fat Body    4.5 Larval Salivary Gland    3 Larval Trachea    3.95 Larval Carcass    4.275 Adult Head    13.3 Adult Eye    11.975 Adult Brain    10.4 Adult Thoracic-Abdominal Ganglion    14.2 Adult Crop    2.7 Adult Midgut    3.8 Adult Hindgut    13.4 Adult Malpighian Tubules    6.7 Adult Fat Body    5 Adult Salivary Gland    5.2 Adult Heart    15.1 Adult VirginFemale Spermatheca    9.2 Adult InseminatedFemale Spermatheca    3.4 Adult Ovary    90.9 Adult Testis    5.5 Adult Male Accessory Gland    11.9 Adult Carcass    6.1 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    5.9 Larval Midgut    1.3 Larval Hindgut    7.1 Larval Malpighian Tubules    6.7 Larval Fat Body    4.5 Larval Salivary Gland    3 Larval Trachea    3.95 Larval Carcass    4.275 Adult Head    13.3 Adult Eye    11.975 Adult Brain    10.4 Adult Thoracic-Abdominal Ganglion    14.2 Adult Crop    2.7 Adult Midgut    3.8 Adult Hindgut    13.4 Adult Malpighian Tubules    6.7 Adult Fat Body    5 Adult Salivary Gland    5.2 Adult Heart    15.1 Adult VirginFemale Spermatheca    9.2 Adult InseminatedFemale Spermatheca    3.4 Adult Ovary    90.9 Adult Testis    5.5 Adult Male Accessory Gland    11.9 Adult Carcass    6.1 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    5.9 Larval Midgut    1.3 Larval Hindgut    7.1 Larval Malpighian Tubules    6.7 Larval Fat Body    4.5 Larval Salivary Gland    3 Larval Trachea    3.95 Larval Carcass    4.275 Adult Head    13.3 Adult Eye    11.975 Adult Brain    10.4 Adult Thoracic-Abdominal Ganglion    14.2 Adult Crop    2.7 Adult Midgut    3.8 Adult Hindgut    13.4 Adult Malpighian Tubules    6.7 Adult Fat Body    5 Adult Salivary Gland    5.2 Adult Heart    15.1 Adult VirginFemale Spermatheca    9.2 Adult InseminatedFemale Spermatheca    3.4 Adult Ovary    90.9 Adult Testis    5.5 Adult Male Accessory Gland    11.9 Adult Carcass    6.1 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    5.9 Larval Midgut    1.3 Larval Hindgut    7.1 Larval Malpighian Tubules    6.7 Larval Fat Body    4.5 Larval Salivary Gland    3 Larval Trachea    3.95 Larval Carcass    4.275 Adult Head    13.3 Adult Eye    11.975 Adult Brain    10.4 Adult Thoracic-Abdominal Ganglion    14.2 Adult Crop    2.7 Adult Midgut    3.8 Adult Hindgut    13.4 Adult Malpighian Tubules    6.7 Adult Fat Body    5 Adult Salivary Gland    5.2 Adult Heart    15.1 Adult VirginFemale Spermatheca    9.2 Adult InseminatedFemale Spermatheca    3.4 Adult Ovary    90.9 Adult Testis    5.5 Adult Male Accessory Gland    11.9 Adult Carcass    6.1 Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    5.9 Larval Midgut    1.3 Larval Hindgut    7.1 Larval Malpighian Tubules    6.7 Larval Fat Body    4.5 Larval Salivary Gland    3 Larval Trachea    3.95 Larval Carcass    4.275 Adult Head    13.3 Adult Eye    11.975 Adult Brain    10.4 Adult Thoracic-Abdominal Ganglion    14.2 Adult Crop    2.7 Adult Midgut    3.8 Adult Hindgut    13.4 Adult Malpighian Tubules    6.7 Adult Fat Body    5 Adult Salivary Gland    5.2 Adult Heart    15.1 Adult VirginFemale Spermatheca    9.2 Adult InseminatedFemale Spermatheca    3.4 Adult Ovary    90.9 Adult Testis    5.5 Adult Male Accessory Gland    11.9 Adult Carcass    6.1 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    5.9 Larval Midgut    1.3 Larval Hindgut    7.1 Larval Malpighian Tubules    6.7 Larval Fat Body    4.5 Larval Salivary Gland    3 Larval Trachea    3.95 Larval Carcass    4.275 Adult Head    13.3 Adult Eye    11.975 Adult Brain    10.4 Adult Thoracic-Abdominal Ganglion    14.2 Adult Crop    2.7 Adult Midgut    3.8 Adult Hindgut    13.4 Adult Malpighian Tubules    6.7 Adult Fat Body    5 Adult Salivary Gland    5.2 Adult Heart    15.1 Adult VirginFemale Spermatheca    9.2 Adult InseminatedFemale Spermatheca    3.4 Adult Ovary    90.9 Adult Testis    5.5 Adult Male Accessory Gland    11.9 Adult Carcass    6.1 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    5.9 Larval Midgut    1.3 Larval Hindgut    7.1 Larval Malpighian Tubules    6.7 Larval Fat Body    4.5 Larval Salivary Gland    3 Larval Trachea    3.95 Larval Carcass    4.275 Adult Head    13.3 Adult Eye    11.975 Adult Brain    10.4 Adult Thoracic-Abdominal Ganglion    14.2 Adult Crop    2.7 Adult Midgut    3.8 Adult Hindgut    13.4 Adult Malpighian Tubules    6.7 Adult Fat Body    5 Adult Salivary Gland    5.2 Adult Heart    15.1 Adult VirginFemale Spermatheca    9.2 Adult InseminatedFemale Spermatheca    3.4 Adult Ovary    90.9 Adult Testis    5.5 Adult Male Accessory Gland    11.9 Adult Carcass    6.1 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    13.3   NA  Eye    11.975   NA  Brain    10.4   5.9  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    14.2   NA  Crop    2.7   1.3  Midgut    3.8   7.1  Hindgut    13.4   6.7  Malpighian Tubules    6.7   4.5  Fat Body    5   3  Salivary Gland    5.2   NA  Heart    15.1   3.95  Trachea    NA   NA  VirginFemale Spermatheca    9.2   NA  InseminatedFemale Spermatheca    3.4   NA  Ovary    90.9   NA  Testis    5.5   NA  Male Accessory Gland    no informative data   4.275  Carcass    6.1 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    0 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    1 head, mated 1-day male    1 head, mated 4-day male    0 head, mated 20-day male    1 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    0 fat body, pupae P8    0 carcass, larvae L3 wandering    0 carcass, 1-day adult    0 carcass, 4-day adult    0 carcass, 20-day adult    0 ovary, virgin 4-day female    7 ovary, mated 4-day female    5 testis, mated 4-day male    0 accessory gland, mated 4-day male    0 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    0 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    1 head, mated 1-day male    1 head, mated 4-day male    0 head, mated 20-day male    1 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    0 fat body, pupae P8    0 carcass, larvae L3 wandering    0 carcass, 1-day adult    0 carcass, 4-day adult    0 carcass, 20-day adult    0 ovary, virgin 4-day female    7 ovary, mated 4-day female    5 testis, mated 4-day male    0 accessory gland, mated 4-day male    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    0 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    1 head, mated 1-day male    1 head, mated 4-day male    0 head, mated 20-day male    1 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    0 fat body, pupae P8    0 carcass, larvae L3 wandering    0 carcass, 1-day adult    0 carcass, 4-day adult    0 carcass, 20-day adult    0 ovary, virgin 4-day female    7 ovary, mated 4-day female    5 testis, mated 4-day male    0 accessory gland, mated 4-day male    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    0 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    1 head, mated 1-day male    1 head, mated 4-day male    0 head, mated 20-day male    1 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    0 fat body, pupae P8    0 carcass, larvae L3 wandering    0 carcass, 1-day adult    0 carcass, 4-day adult    0 carcass, 20-day adult    0 ovary, virgin 4-day female    7 ovary, mated 4-day female    5 testis, mated 4-day male    0 accessory gland, mated 4-day male    0 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    0 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    1 head, mated 1-day male    1 head, mated 4-day male    0 head, mated 20-day male    1 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    0 fat body, pupae P8    0 carcass, larvae L3 wandering    0 carcass, 1-day adult    0 carcass, 4-day adult    0 carcass, 20-day adult    0 ovary, virgin 4-day female    7 ovary, mated 4-day female    5 testis, mated 4-day male    0 accessory gland, mated 4-day male    0 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    0 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    1 head, mated 1-day male    1 head, mated 4-day male    0 head, mated 20-day male    1 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    0 fat body, pupae P8    0 carcass, larvae L3 wandering    0 carcass, 1-day adult    0 carcass, 4-day adult    0 carcass, 20-day adult    0 ovary, virgin 4-day female    7 ovary, mated 4-day female    5 testis, mated 4-day male    0 accessory gland, mated 4-day male    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    0 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    1 head, mated 1-day male    1 head, mated 4-day male    0 head, mated 20-day male    1 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    0 fat body, pupae P8    0 carcass, larvae L3 wandering    0 carcass, 1-day adult    0 carcass, 4-day adult    0 carcass, 20-day adult    0 ovary, virgin 4-day female    7 ovary, mated 4-day female    5 testis, mated 4-day male    0 accessory gland, mated 4-day male    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    0 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    1 head, mated 1-day male    1 head, mated 4-day male    0 head, mated 20-day male    1 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    0 fat body, pupae P8    0 carcass, larvae L3 wandering    0 carcass, 1-day adult    0 carcass, 4-day adult    0 carcass, 20-day adult    0 ovary, virgin 4-day female    7 ovary, mated 4-day female    5 testis, mated 4-day male    0 accessory gland, mated 4-day male    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of very low expression. Peak expression observed within 00-06 hour embryonic stages, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    5 embryo 02-04hr    1 embryo 04-06hr    1 embryo 06-08hr    1 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    1 embryo 14-16hr    0 embryo 16-18hr    1 embryo 18-20hr    0 embryo 20-22hr    1 embryo 22-24hr    1 larva L1    1 larva L2    1 larva L3 12hr old    1 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    0 white prepupae 12hr    1 white prepupae 24hr    1 pupae 2d postWPP    1 pupae 3d postWPP    1 pupae 4d postWPP    0 adult male 01day    0 adult male 05day    0 adult male 30day    0 adult female 01day    2 adult female 05day    5 adult female 30day    5 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    5 embryo 02-04hr    1 embryo 04-06hr    1 embryo 06-08hr    1 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    1 embryo 14-16hr    0 embryo 16-18hr    1 embryo 18-20hr    0 embryo 20-22hr    1 embryo 22-24hr    1 larva L1    1 larva L2    1 larva L3 12hr old    1 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    0 white prepupae 12hr    1 white prepupae 24hr    1 pupae 2d postWPP    1 pupae 3d postWPP    1 pupae 4d postWPP    0 adult male 01day    0 adult male 05day    0 adult male 30day    0 adult female 01day    2 adult female 05day    5 adult female 30day    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    5 embryo 02-04hr    1 embryo 04-06hr    1 embryo 06-08hr    1 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    1 embryo 14-16hr    0 embryo 16-18hr    1 embryo 18-20hr    0 embryo 20-22hr    1 embryo 22-24hr    1 larva L1    1 larva L2    1 larva L3 12hr old    1 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    0 white prepupae 12hr    1 white prepupae 24hr    1 pupae 2d postWPP    1 pupae 3d postWPP    1 pupae 4d postWPP    0 adult male 01day    0 adult male 05day    0 adult male 30day    0 adult female 01day    2 adult female 05day    5 adult female 30day    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    5 embryo 02-04hr    1 embryo 04-06hr    1 embryo 06-08hr    1 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    1 embryo 14-16hr    0 embryo 16-18hr    1 embryo 18-20hr    0 embryo 20-22hr    1 embryo 22-24hr    1 larva L1    1 larva L2    1 larva L3 12hr old    1 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    0 white prepupae 12hr    1 white prepupae 24hr    1 pupae 2d postWPP    1 pupae 3d postWPP    1 pupae 4d postWPP    0 adult male 01day    0 adult male 05day    0 adult male 30day    0 adult female 01day    2 adult female 05day    5 adult female 30day    5 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    5 embryo 02-04hr    1 embryo 04-06hr    1 embryo 06-08hr    1 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    1 embryo 14-16hr    0 embryo 16-18hr    1 embryo 18-20hr    0 embryo 20-22hr    1 embryo 22-24hr    1 larva L1    1 larva L2    1 larva L3 12hr old    1 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    0 white prepupae 12hr    1 white prepupae 24hr    1 pupae 2d postWPP    1 pupae 3d postWPP    1 pupae 4d postWPP    0 adult male 01day    0 adult male 05day    0 adult male 30day    0 adult female 01day    2 adult female 05day    5 adult female 30day    5 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    5 embryo 02-04hr    1 embryo 04-06hr    1 embryo 06-08hr    1 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    1 embryo 14-16hr    0 embryo 16-18hr    1 embryo 18-20hr    0 embryo 20-22hr    1 embryo 22-24hr    1 larva L1    1 larva L2    1 larva L3 12hr old    1 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    0 white prepupae 12hr    1 white prepupae 24hr    1 pupae 2d postWPP    1 pupae 3d postWPP    1 pupae 4d postWPP    0 adult male 01day    0 adult male 05day    0 adult male 30day    0 adult female 01day    2 adult female 05day    5 adult female 30day    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    5 embryo 02-04hr    1 embryo 04-06hr    1 embryo 06-08hr    1 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    1 embryo 14-16hr    0 embryo 16-18hr    1 embryo 18-20hr    0 embryo 20-22hr    1 embryo 22-24hr    1 larva L1    1 larva L2    1 larva L3 12hr old    1 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    0 white prepupae 12hr    1 white prepupae 24hr    1 pupae 2d postWPP    1 pupae 3d postWPP    1 pupae 4d postWPP    0 adult male 01day    0 adult male 05day    0 adult male 30day    0 adult female 01day    2 adult female 05day    5 adult female 30day    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    5 embryo 02-04hr    1 embryo 04-06hr    1 embryo 06-08hr    1 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    1 embryo 14-16hr    0 embryo 16-18hr    1 embryo 18-20hr    0 embryo 20-22hr    1 embryo 22-24hr    1 larva L1    1 larva L2    1 larva L3 12hr old    1 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    0 white prepupae 12hr    1 white prepupae 24hr    1 pupae 2d postWPP    1 pupae 3d postWPP    1 pupae 4d postWPP    0 adult male 01day    0 adult male 05day    0 adult male 30day    0 adult female 01day    2 adult female 05day    5 adult female 30day    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    5 Schneider line 2 Sg4    0 embryonic 1182-4H    4 embryonic GM2    0 embryonic Kc167    2 embryonic S1    6 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    5 wing disc ML-DmD8    1 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    1 wing disc ML-DmD21    0 wing disc ML-DmD32    5 haltere disc ML-DmD17-c3    1 eye-antennal disc ML-DmD11    8 antennal disc ML-DmD20-c5    7 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    5 CNS ML-DmBG2-c2    9 tumorous blood cells mbn2    4 ovary fGS/OSS    1 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    5 Schneider line 2 Sg4    0 embryonic 1182-4H    4 embryonic GM2    0 embryonic Kc167    2 embryonic S1    6 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    5 wing disc ML-DmD8    1 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    1 wing disc ML-DmD21    0 wing disc ML-DmD32    5 haltere disc ML-DmD17-c3    1 eye-antennal disc ML-DmD11    8 antennal disc ML-DmD20-c5    7 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    5 CNS ML-DmBG2-c2    9 tumorous blood cells mbn2    4 ovary fGS/OSS    1 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    5 Schneider line 2 Sg4    0 embryonic 1182-4H    4 embryonic GM2    0 embryonic Kc167    2 embryonic S1    6 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    5 wing disc ML-DmD8    1 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    1 wing disc ML-DmD21    0 wing disc ML-DmD32    5 haltere disc ML-DmD17-c3    1 eye-antennal disc ML-DmD11    8 antennal disc ML-DmD20-c5    7 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    5 CNS ML-DmBG2-c2    9 tumorous blood cells mbn2    4 ovary fGS/OSS    1 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    5 Schneider line 2 Sg4    0 embryonic 1182-4H    4 embryonic GM2    0 embryonic Kc167    2 embryonic S1    6 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    5 wing disc ML-DmD8    1 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    1 wing disc ML-DmD21    0 wing disc ML-DmD32    5 haltere disc ML-DmD17-c3    1 eye-antennal disc ML-DmD11    8 antennal disc ML-DmD20-c5    7 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    5 CNS ML-DmBG2-c2    9 tumorous blood cells mbn2    4 ovary fGS/OSS    1 ovary OSC    0 ovary OSS    0 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    5 Schneider line 2 Sg4    0 embryonic 1182-4H    4 embryonic GM2    0 embryonic Kc167    2 embryonic S1    6 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    5 wing disc ML-DmD8    1 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    1 wing disc ML-DmD21    0 wing disc ML-DmD32    5 haltere disc ML-DmD17-c3    1 eye-antennal disc ML-DmD11    8 antennal disc ML-DmD20-c5    7 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    5 CNS ML-DmBG2-c2    9 tumorous blood cells mbn2    4 ovary fGS/OSS    1 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    5 Schneider line 2 Sg4    0 embryonic 1182-4H    4 embryonic GM2    0 embryonic Kc167    2 embryonic S1    6 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    5 wing disc ML-DmD8    1 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    1 wing disc ML-DmD21    0 wing disc ML-DmD32    5 haltere disc ML-DmD17-c3    1 eye-antennal disc ML-DmD11    8 antennal disc ML-DmD20-c5    7 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    5 CNS ML-DmBG2-c2    9 tumorous blood cells mbn2    4 ovary fGS/OSS    1 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    5 Schneider line 2 Sg4    0 embryonic 1182-4H    4 embryonic GM2    0 embryonic Kc167    2 embryonic S1    6 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    5 wing disc ML-DmD8    1 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    1 wing disc ML-DmD21    0 wing disc ML-DmD32    5 haltere disc ML-DmD17-c3    1 eye-antennal disc ML-DmD11    8 antennal disc ML-DmD20-c5    7 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    5 CNS ML-DmBG2-c2    9 tumorous blood cells mbn2    4 ovary fGS/OSS    1 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    5 Schneider line 2 Sg4    0 embryonic 1182-4H    4 embryonic GM2    0 embryonic Kc167    2 embryonic S1    6 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    5 wing disc ML-DmD8    1 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    1 wing disc ML-DmD21    0 wing disc ML-DmD32    5 haltere disc ML-DmD17-c3    1 eye-antennal disc ML-DmD11    8 antennal disc ML-DmD20-c5    7 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    5 CNS ML-DmBG2-c2    9 tumorous blood cells mbn2    4 ovary fGS/OSS    1 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    0 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    0 Cadmium 50 mM 48 hrs, 4-day adult    2 Cadmium 100 mM 48 hrs, 4-day adult    3 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    3 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    0 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    0 Ethanol 10% 3 hrs, larvae L3    0 Caffeine 1.5 mg/ml 4 hrs, larvae L3    0 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    4 Caffeine 25 mg/ml 48 hrs, 4-day adult    1 Paraquat 5 mM 48 hrs, 4-day adult    3 Paraquat 10 mM 48 hrs, 4-day adult    2 Rotenone 2 μg 12 hrs, larvae L3    0 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    0 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    0 Cadmium 50 mM 48 hrs, 4-day adult    2 Cadmium 100 mM 48 hrs, 4-day adult    3 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    3 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    0 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    0 Ethanol 10% 3 hrs, larvae L3    0 Caffeine 1.5 mg/ml 4 hrs, larvae L3    0 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    4 Caffeine 25 mg/ml 48 hrs, 4-day adult    1 Paraquat 5 mM 48 hrs, 4-day adult    3 Paraquat 10 mM 48 hrs, 4-day adult    2 Rotenone 2 μg 12 hrs, larvae L3    0 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    0 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    0 Cadmium 50 mM 48 hrs, 4-day adult    2 Cadmium 100 mM 48 hrs, 4-day adult    3 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    3 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    0 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    0 Ethanol 10% 3 hrs, larvae L3    0 Caffeine 1.5 mg/ml 4 hrs, larvae L3    0 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    4 Caffeine 25 mg/ml 48 hrs, 4-day adult    1 Paraquat 5 mM 48 hrs, 4-day adult    3 Paraquat 10 mM 48 hrs, 4-day adult    2 Rotenone 2 μg 12 hrs, larvae L3    0 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    0 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    0 Cadmium 50 mM 48 hrs, 4-day adult    2 Cadmium 100 mM 48 hrs, 4-day adult    3 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    3 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    0 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    0 Ethanol 10% 3 hrs, larvae L3    0 Caffeine 1.5 mg/ml 4 hrs, larvae L3    0 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    4 Caffeine 25 mg/ml 48 hrs, 4-day adult    1 Paraquat 5 mM 48 hrs, 4-day adult    3 Paraquat 10 mM 48 hrs, 4-day adult    2 Rotenone 2 μg 12 hrs, larvae L3    0 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    0 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    0 Cadmium 50 mM 48 hrs, 4-day adult    2 Cadmium 100 mM 48 hrs, 4-day adult    3 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    3 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    0 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    0 Ethanol 10% 3 hrs, larvae L3    0 Caffeine 1.5 mg/ml 4 hrs, larvae L3    0 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    4 Caffeine 25 mg/ml 48 hrs, 4-day adult    1 Paraquat 5 mM 48 hrs, 4-day adult    3 Paraquat 10 mM 48 hrs, 4-day adult    2 Rotenone 2 μg 12 hrs, larvae L3    0 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    0 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    0 Cadmium 50 mM 48 hrs, 4-day adult    2 Cadmium 100 mM 48 hrs, 4-day adult    3 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    3 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    0 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    0 Ethanol 10% 3 hrs, larvae L3    0 Caffeine 1.5 mg/ml 4 hrs, larvae L3    0 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    4 Caffeine 25 mg/ml 48 hrs, 4-day adult    1 Paraquat 5 mM 48 hrs, 4-day adult    3 Paraquat 10 mM 48 hrs, 4-day adult    2 Rotenone 2 μg 12 hrs, larvae L3    0 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    0 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    0 Cadmium 50 mM 48 hrs, 4-day adult    2 Cadmium 100 mM 48 hrs, 4-day adult    3 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    3 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    0 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    0 Ethanol 10% 3 hrs, larvae L3    0 Caffeine 1.5 mg/ml 4 hrs, larvae L3    0 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    4 Caffeine 25 mg/ml 48 hrs, 4-day adult    1 Paraquat 5 mM 48 hrs, 4-day adult    3 Paraquat 10 mM 48 hrs, 4-day adult    2 Rotenone 2 μg 12 hrs, larvae L3    0 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    0 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    0 Cadmium 50 mM 48 hrs, 4-day adult    2 Cadmium 100 mM 48 hrs, 4-day adult    3 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    3 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    0 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    0 Ethanol 10% 3 hrs, larvae L3    0 Caffeine 1.5 mg/ml 4 hrs, larvae L3    0 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    4 Caffeine 25 mg/ml 48 hrs, 4-day adult    1 Paraquat 5 mM 48 hrs, 4-day adult    3 Paraquat 10 mM 48 hrs, 4-day adult    2 Rotenone 2 μg 12 hrs, larvae L3    0 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_13 mE1_20_mRNA_expression_cluster_07
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0003751 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG5619-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal | embryonic stage | germline clone | non-rescuable maternal effect | recessive trk2L-214-12 trk2L-226-39 trk2L-335-25 trk2L-336-10 lethal | embryonic stage | maternal effect | recessive trk1 trk2 trk3 trk4 trk5 trk6 lethal | maternal effect trk1 Sterility Allele female sterile | recessive trk1 trk2 trk3 trk4 trk5 trk6 Other Phenotypes Allele developmental rate defective | larval stage, with Scer\GAL4da.G32 trkC-108.Scer\UAS.T:SS-ea visible | embryonic stage | recessive trk1 wild-type trk+t6 trk+t3004 trkfl.cCa Phenotype manifest in Allele abdomen trk1 abdominal 8 ventral denticle belt trk1 abdominal 9 ventral denticle belt trk1 abdominal segment 5 trk3 trkR153 abdominal segment 6 trk3 trkR153 abdominal segment 7 trk3 trkR153 abdominal segment 8 trk1 trk3 trkR153 abdominal segment 9 trk3 trkR153 abdominal segment 10 trk3 trkR153 cephalic furrow trk3 trkR153 cephalic furrow | maternal effect trk1 trk2 trk3 trk4 trk5 trk6 embryo | germline clone | maternal effect | terminal expression pattern trk2L-214-12 trk2L-226-39 trk2L-335-25 trk2L-336-10 embryo | posterior trk5 embryonic/first instar larval cuticle | maternal effect trk1 trk2 trk3 trk4 trk5 trk6 embryonic abdominal segment 8 trk5 embryonic abdominal segment 8 | maternal effect trk1 embryonic labral segment | maternal effect trk1 trk2 trk3 trk4 trk5 trk6 embryonic segment, with Scer\GAL4nos.UTR.T:Hsim\VP16 trkC-108.Scer\UAS.T:SS-ea extended germ band embryo | maternal effect trk1 trk2 trk3 trk4 trk5 trk6 filzkorper trk1 trkV67-1 filzkorper | maternal effect trk1 labrum trk1 trk3 trkR153 ocular segment trk3 trkR153 posterior endoderm | maternal effect trk1 trk2 trk3 trk4 trk5 trk6 posterior midgut primordium | maternal effect trk1 trk2 trk3 trk4 trk5 trk6 telson trk1 trk3 trkR153 telson | maternal effect trk1 trk2 trk3 trk4 trk5 trk6 ventral furrow trk3 trkR153
Classical Alleles ( 14 )
For All Classical Alleles Show
Allele of trk Class Mutagen Stocks Known lesion trk1 amorphic allele - genetic evidence ethyl methanesulfonate 2 Yes trk2 amorphic allele - genetic evidence, loss of function allele ethyl methanesulfonate 1 Yes trk3 amorphic allele - genetic evidence ethyl methanesulfonate 0 Yes trk6 amorphic allele - genetic evidence ethyl methanesulfonate 0 Yes trk2L-214-12 ethyl methanesulfonate 0 -- trk2L-226-39 ethyl methanesulfonate 0 -- trk2L-335-25 ethyl methanesulfonate 0 -- trk2L-336-10 ethyl methanesulfonate 0 -- trk4 hypomorphic allele - genetic evidence ethyl methanesulfonate 0 Yes trk5 hypomorphic allele - genetic evidence ethyl methanesulfonate 0 Yes trkPM51 0 -- trkR153 0 -- trkunspecified 0 -- trkV67-1 P-element activity 0 Yes
Alleles Carried on Transgenic Constructs ( 10 )
For All Alleles Carried on Transgenic Constructs Show
Allele of trk Class Mutagen Stocks Known lesion trkGD5500 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes trk+t3004 in vitro construct - genomic fragment 0 Yes trk+t6 in vitro construct - genomic fragment 0 Yes trkC-100.T:SS-wg in vitro construct - coding region fusion 0 Yes trkC-108.Scer\UAS.T:SS-ea in vitro construct - coding region fusion in vitro construct - regulatory fusion 0 Yes trkC-108.T:SS-ea in vitro construct - coding region fusion 0 Yes trkC-159.T:SS-ea in vitro construct - coding region fusion 0 Yes trkfl.cCa in vitro construct - coding region fusion 0 Yes trkNIG.5619R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes trkScer\UAS.cCa in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(2L)BSC143 (Christensen and Cook, 2006.3.8) Df(2L)BSC144 (Christensen and Cook, 2006.3.8) Df(2L)BSC206 (Christensen and Cook, 2006.8.30) Df(2L)BSC827 (Christensen et al., 2009.7.22) Df(2L)Exel6026 (Ryder, 2004.4.26) Df(2L)G2 (Clegg et al., 1993) Df(2L)J1 (Clegg et al., 1993) Df(2L)J2 (Schupbach and Wieschaus, 1989, Schupbach and Wieschaus, 1991, Clegg et al., 1993) Df(2L)J39 (Clegg et al., 1993) Df(2L)J77 (Clegg et al., 1993, Furriols et al., 1996)
Not disrupted in	Df(2L)J3 (Clegg et al., 1993) Df(2L)J16 (Clegg et al., 1993) Df(2L)J17 (Clegg et al., 1993) Df(2L)J27 (Clegg et al., 1993) Df(2L)J106 (Clegg et al., 1993)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD5500} NA P{NIG.5619R} NA P{UAS-trk.C-108} NA P{UAS-trk.C} NA characterization construct P{TR11} NA P{trk+3.0} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions P{}trkV67-1 NA
Gene Ontology: Function, Process & Cellular Component ( 6 unique terms )
Terms Based on Experimental Evidence ( 2 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
terminal region determination inferred from mutant phenotype (Casanova et al., 1995) torso signaling pathway inferred from mutant phenotype (Sprenger et al., 1993)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 5 terms )
Molecular Function
CV term Evidence References
torso binding non-traceable author statement (Swiss-Prot Project Members, 1997.2.1) traceable author statement (Casanova et al., 1995)
Biological Process
CV term Evidence References
anterior/posterior axis specification, embryo traceable author statement (Ray et al., 1991, Baek and Lee, 1999) maternal determination of anterior/posterior axis, embryo non-traceable author statement (Strecker et al., 1991) torso signaling pathway traceable author statement (Casanova et al., 1995)
Cellular Component
CV term Evidence References
extracellular region inferred from sequence or structural similarity (Casanova et al., 1995)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions trk allele Gene References trk1 tsl (Furriols et al., 1998) trk5 sty (Casci et al., 1999) trkunspecified bcd (Schaeffer et al., 2000) unspecified RpII140 (Parkhurst and Ish-Horowicz, 1991) tor (Furriols et al., 1996)
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 60463 DroID - A comprehensive database of gene and protein interactions. • FBgn0003751 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 34376
Orthologs
OrthoDB Orthologs (14) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6WSWWX Dipteran inclusive ortholog search EOG6Q58ZF Insect inclusive ortholog search EOG6KWHPW Arthropod inclusive ortholog search EOG61VHK1 Metazoa inclusive ortholog search No orthologs identified
Orthologs in Drosophila Species (EOG6WSWWX)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\trk     Drosophila erecta   Dere\GG23960 Y   Drosophila yakuba   Dyak\GE26229 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA19010 Y   Drosophila persimilis   Dper\GL19167 Y   Drosophila willistoni   Dwil\GK18997 Y   Drosophila virilis   Dvir\GJ18115 Y   Drosophila mojavensis   Dmoj\GI17618 Y   Drosophila grimshawi   Dgri\GH13558 Y
Orthologs in non-Drosophila Dipterans (EOG6Q58ZF)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL007584   Anopheles gambiae Malaria mosquito  Agam\AGAP002846   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ002748
Orthologs in non-Dipteran Insects (EOG6KWHPW)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Tribolium castaneum Red flour beetle  Tcas\trk
Orthologs in non-Insect Arthropods (EOG61VHK1)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Ixodes scapularis Deer tick  Isca\ISCW001809
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (9) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD17815 Drosophila erecta Dere\GG23960 Drosophila yakuba Dyak\GE26229 Drosophila pseudoobscura pseudoobscura Dpse\GA19010 Drosophila persimilis Dper\GL19167 Drosophila willistoni Dwil\GK18997 Drosophila virilis Dvir\GJ18115 Drosophila mojavensis Dmoj\GI17618 Drosophila grimshawi Dgri\GH13558
Stocks & Reagents
Stocks Listed in FlyBase ( 4 )
Bloomington	1212 trk1 cn1 bw1/CyO 7101 trk2 cn1 bw1/CyO
Kyoto	106247 trk1 cn1/CyO
VDRC	v51240 w1118; P{GD5500}v51240
Genomic Clones ( 2 )
	BACR07H08 BACR30M19 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 0 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0003751 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 34376
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
	Different amounts of tor or trk molecules correlate with the expression of different zygotic genes, implicating changes in the number of activated tor molecules as one of the mechanisms defining differential gene expression. (Furriols et al., 1996) trk encodes a protein that resembles spz in several aspects, in particular the sequence suggests that trk is a secreted protein which contains an internal site for proteolytic cleavage. Overall orientation not stated: anon-31BCa+ trk+ anon-31BCb- (Casanova et al., 1995) It is proposed that trk encodes an extracellular ligand involved in specifying terminal body pattern and suggests, by analogy with spz, that a cleaved form of trk constitutes the ligand for the tor receptor. (Casanova et al., 1995) Distribution of tud protein in mutant embryos has been studied. Maternal genes such as bcd, tor and trk that are necessary for anteroposterior axis formation, but not required for germ cell formation or abdominal segmentation, have no effect on the distribution of tud protein. (Bardsley et al., 1993) "Splice" phenotype of torNRE dependent on tll, trk and tsl. trk mutation suppresses phenotype of torKr.P. (Casanova and Struhl, 1993) The maternal terminal system is necessary to activate tll expression in the terminal caps. (Pignoni et al., 1992) Mutations in maternal terminal class gene trk interact with RpII140wimp. (Parkhurst and Ish-Horowicz, 1991) trk plays a role in the specification of the anterior and posterior pole. (Ray et al., 1991) Zygotically active locus involved in the terminal developmental program in the embryo in the embryo. (Strecker et al., 1991) Mature follicles are immunologically stained for asymmetric distribution of ecdysteroid-related antigen. During late oogenesis localisation of the antigen changes dramatically suggesting the antigen plays a role in early embryogenesis and, perhaps, in pattern formation. (Grau and Gutzeit, 1990) Mutations in trk result in a maternal effect phenotype with defects during the early stages of gastrulation and defects in the anteroposterior axis. (Schupbach and Wieschaus, 1989)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_057419 RefSeq (Proteins) • NP_476767 DDBJ / EMBL / GenBank • AAC46953 AAF52896 AC005454 U41064 Entrez Gene - A searchable database of RefSeq genes. • 34376 UniProtKB/Swiss-Prot • Q24155
Other Crossreferences
Linkouts
	BioGRID - A database of protein and genetic interactions • 60463 DroID - A comprehensive database of gene and protein interactions. • FBgn0003751 DRSC - Results from RNAi screens. • FBgn0003751 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0003751 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG5619-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0003751 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 34376 Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution • /torstoll/trunk.htm InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 34376 modMine - Data generated by the modENCODE project. • FBgn0003751
Synonyms & Secondary IDs ( 5 )
Reported As
Symbol Synonym	CG5619   fs(2)trunk (Lu et al., 1993, Ambrosio et al., 1989) trk (Casanova, 1999.9.6, Christensen and Cook, 2006.8.30, de las Heras and Casanova, 2006, Kim et al., 2011, Mao and Freeman, 2009, Christensen et al., 2009.7.22, Rewitz et al., 2009, Ding et al., 2010, Sprenger et al., 1993, Grimm et al., 2012, Japanese National Institute of Genetics, 2012.5.21, Grillo et al., 2012)
Name Synonym	trunk (Casanova, 1995.11.21, Coppey et al., 2007, Ventura et al., 2008, Kim et al., 2011, Rewitz et al., 2009, Ding et al., 2010, Sprenger et al., 1993) Trunk (Berezhkovskii et al., 2009)
Secondary FlyBase IDs
References ( 94 )
Generate a list of	All references relating to this gene ( 94 )
List References by type	Research paper  ( 47 ) Supplementary material  ( 4 ) Review  ( 25 ) Personal communication to FlyBase  ( 8 ) Abstract  ( 3 ) FlyBase analysis  ( 2 ) DNA/RNA sequence record  ( 1 ) Stock list  ( 1 ) Letter  ( 1 ) Protein sequence record  ( 1 ) Curated genome annotation  ( 1 )
Recent research papers ( 3 )
	Grillo et al., 2012, Sci. Rep. 2: 762 Conserved and divergent elements in Torso RTK activation in Drosophila development. [FBrf0219757] Grimm et al., 2012, Development 139(21): 3962--3968 Torso RTK controls Capicua degradation by changing its subcellular localization. [FBrf0219625] Kim et al., 2011, Dev. Cell 20(6): 880--887 Gene regulation by MAPK substrate competition. [FBrf0213872] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2011 Show reviews ...