A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Gene Dmel\αTub85E

General Information
SymbolDmel\αTub85ESpeciesD. melanogaster
Nameα-Tubulin at 85EAnnotation symbolCG9476
Feature typeprotein_coding_geneFlyBase IDFBgn0003886
Gene Model StatusCurrent Stock availability 2 publicly available
Also Known Asα-tubulin, Tub, α-Tub, α85E, α2
Genomic Location
Chromosome (arm)3RRecombination map
Cytogenetic map85E6-85E6Sequence location3R:5,556,943..5,558,987 [-]

Genomic Maps

GBrowse View Help
modENCODE GBrowse
detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
The gene α-Tubulin at 85E is referred to in FlyBase by the symbol Dmel\αTub85E (CG9476, FBgn0003886). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: structural constituent of cytoskeleton. There is experimental evidence that it is involved in the biological process: mitotic cell cycle spindle assembly checkpoint; cellular process; mitotic spindle organization; centrosome duplication. 5 alleles are reported. The phenotype of these alleles is annotated with: spermatid. It has one annotated transcript and one annotated polypeptide. Protein features are: Alpha tubulin; Tubulin; Tubulin, C-terminal; Tubulin, conserved site; Tubulin/FtsZ, 2-layer sandwich domain; Tubulin/FtsZ, C-terminal; Tubulin/FtsZ, GTPase domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of very low expression. Peak expression observed within 12-24 hour embryonic stages, during early larval stages, during early pupal stages. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult testis. Comments on Affy2 ProbeSet: ProbeSet 1623910_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of alphaTub85E. Gene sequence location is 3R:5556943..5558987.

hide Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
Gene/Allele symbols may differ from current usage
αTub85E (α2t)
A structural gene for α-Tubulin. Only α-Tubulin not expressed maternally. Transcripts present from 6-8 hr through adult. Protein found in support cells of chordotonal organs, developing muscles, and somatic component of the testis (Matthews, Miller, and Kaufman).
hide Recent Updates
Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
Update Feed
Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10
FB2012_01
References
Sequence features
Controlled Vocabulary Terms
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
85E6-85E6  
Limits computationally determined from genome sequence between P{EP}CrcEP3006 and P{lacW}s2681  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
85E-85E  
(determined by in situ hybridisation)  
85E6-85E10  
(determined by in situ hybridisation)  
85E6-85E10  
(determined by in situ hybridisation)  
85E6-85E10  
(determined by in situ hybridisation)  
85E6-85E10  
(determined by in situ hybridisation)  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\αTub85E for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0304868 FBtr0304869 FBtr0082087 FBtr0082170 FBpp0293408 FBpp0293409 FBpp0081565 FBpp0081648 FBti0114258 FBti0114259 FBti0126002_2 FBti0126002_1
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0082087
  1575
  449
Additional Transcript Data & Comments
Reported size (kB)
2.049 (sequence analysis)
2.0, 1.8 (northern blot)
1.85, 1.65 (northern blot)
1.55 (northern blot)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0081565  
50.0  
449  
4.83  
Additional Polypeptide Data & Comments
Reported size (kDa)
449 (aa); 55 (kD predicted)
Comments
Polypeptides were identified in wing imaginal discs and in the CME W2 wing imaginal disc cell line by 2D gel electrophoresis and by microsequencing.
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
No Assay Recorded
Stage
Tissue/Position (including subcellular localization)
Reference
 
Comment:reference states 8-12 hr AEL
northern blot
Stage
Tissue/Position (including subcellular localization)
Reference
Comment:reference states 0-6 hr AEL
Comment:reference states 2-21 hr AEL
Comment:reference states 6-12 hr AEL
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hidePolypeptide Expression
No Assay Recorded
Stage
Tissue/Position (including subcellular localization)
Reference
immunolocalization
Stage
Tissue/Position (including subcellular localization)
Reference
western blot
Stage
Tissue/Position (including subcellular localization)
Reference
Comment:reference states 16-20 hr AEL
Additional Descriptive Data
To compare synthesis and accumulation of α-tubulin proteins, 35S</up>methionine radiolabeled tissues were subjected to Western analysis using monoclonal anti-α-tubulin antibody. Newly synthesized αTub85E protein was observed possibly in testes and imaginal disc tissue, but a stable pool was observed only in late embryos.
Marker for
Subcellular Localization
CV Term
Notes
hide High-Throughput Expression Data
or
Untitled Document detailed view alphaTub85E-RA
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

modENCODE Temporal Expression Data for FBgn0003886


   Styles
Linear
Logarithmic
Heatmap
   Scales
max expr for FBgn0003886
Very low expression bin max
Moderate expression bin max
High expression bin max
Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of very low expression. Peak expression observed within 12-24 hour embryonic stages, during early larval stages, during early pupal stages.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No expression (0 - 0)
 
Extremely low expression (1 - 10)
 
Very low expression (11 - 100)
 
Low expression (101 - 400)
 
Moderate expression (401 - 1400)
 
Moderately high expression (1401 - 4000)
 
High expression (4001 - 10000)
 
Very high expression (10001 - 100000)
 
Extremely high expression (100001 - 2000000)

Linear, scaled to maximum FBgn0003886 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 44
embryo 02-04hr
 
 55
embryo 04-06hr
 
 59
embryo 06-08hr
 
 362
embryo 08-10hr
 
 752
embryo 10-12hr
 
 5353
embryo 12-14hr
 
 5328
embryo 14-16hr
 
 11335
embryo 16-18hr
 
 10033
embryo 18-20hr
 
 12580
embryo 20-22hr
 
 10128
embryo 22-24hr
 
 8504
larva L1
 
 10569
larva L2
 
 8954
larva L3 12hr old
 
 6084
larva L3 puffstage 1-2
 
 2458
larva L3 puffstage 3-6
 
 3019
larva L3 puffstage 7-9
 
 2877
white prepupae new
 
 2357
white prepupae 12hr
 
 3060
white prepupae 24hr
 
 11385
pupae 2d postWPP
 
 6711
pupae 3d postWPP
 
 4928
pupae 4d postWPP
 
 3585
adult male 01day
 
 2963
adult male 05day
 
 2696
adult male 30day
 
 2713
adult female 01day
 
 489
adult female 05day
 
 54
adult female 30day
 
 37
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 44
embryo 02-04hr
 
 55
embryo 04-06hr
 
 59
embryo 06-08hr
 (362)
embryo 08-10hr
 (752)
embryo 10-12hr
 (5353)
embryo 12-14hr
 (5328)
embryo 14-16hr
 (11335)
embryo 16-18hr
 (10033)
embryo 18-20hr
 (12580)
embryo 20-22hr
 (10128)
embryo 22-24hr
 (8504)
larva L1
 (10569)
larva L2
 (8954)
larva L3 12hr old
 (6084)
larva L3 puffstage 1-2
 (2458)
larva L3 puffstage 3-6
 (3019)
larva L3 puffstage 7-9
 (2877)
white prepupae new
 (2357)
white prepupae 12hr
 (3060)
white prepupae 24hr
 (11385)
pupae 2d postWPP
 (6711)
pupae 3d postWPP
 (4928)
pupae 4d postWPP
 (3585)
adult male 01day
 (2963)
adult male 05day
 (2696)
adult male 30day
 (2713)
adult female 01day
 (489)
adult female 05day
 
 54
adult female 30day
 
 37
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 44
embryo 02-04hr
 
 55
embryo 04-06hr
 
 59
embryo 06-08hr
 
 362
embryo 08-10hr
 
 752
embryo 10-12hr
 (5353)
embryo 12-14hr
 (5328)
embryo 14-16hr
 (11335)
embryo 16-18hr
 (10033)
embryo 18-20hr
 (12580)
embryo 20-22hr
 (10128)
embryo 22-24hr
 (8504)
larva L1
 (10569)
larva L2
 (8954)
larva L3 12hr old
 (6084)
larva L3 puffstage 1-2
 (2458)
larva L3 puffstage 3-6
 (3019)
larva L3 puffstage 7-9
 (2877)
white prepupae new
 (2357)
white prepupae 12hr
 (3060)
white prepupae 24hr
 (11385)
pupae 2d postWPP
 (6711)
pupae 3d postWPP
 (4928)
pupae 4d postWPP
 (3585)
adult male 01day
 (2963)
adult male 05day
 (2696)
adult male 30day
 (2713)
adult female 01day
 
 489
adult female 05day
 
 54
adult female 30day
 
 37
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 44
embryo 02-04hr
 
 55
embryo 04-06hr
 
 59
embryo 06-08hr
 
 362
embryo 08-10hr
 
 752
embryo 10-12hr
 
 5353
embryo 12-14hr
 
 5328
embryo 14-16hr
 (11335)
embryo 16-18hr
 10033
embryo 18-20hr
 (12580)
embryo 20-22hr
 10128
embryo 22-24hr
 
 8504
larva L1
 10569
larva L2
 
 8954
larva L3 12hr old
 
 6084
larva L3 puffstage 1-2
 
 2458
larva L3 puffstage 3-6
 
 3019
larva L3 puffstage 7-9
 
 2877
white prepupae new
 
 2357
white prepupae 12hr
 
 3060
white prepupae 24hr
 (11385)
pupae 2d postWPP
 
 6711
pupae 3d postWPP
 
 4928
pupae 4d postWPP
 
 3585
adult male 01day
 
 2963
adult male 05day
 
 2696
adult male 30day
 
 2713
adult female 01day
 
 489
adult female 05day
 
 54
adult female 30day
 
 37
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 44
embryo 02-04hr
 
 55
embryo 04-06hr
 
 59
embryo 06-08hr
 
 362
embryo 08-10hr
 
 752
embryo 10-12hr
 
 5353
embryo 12-14hr
 
 5328
embryo 14-16hr
 
 11335
embryo 16-18hr
 
 10033
embryo 18-20hr
 
 12580
embryo 20-22hr
 
 10128
embryo 22-24hr
 
 8504
larva L1
 
 10569
larva L2
 
 8954
larva L3 12hr old
 
 6084
larva L3 puffstage 1-2
 
 2458
larva L3 puffstage 3-6
 
 3019
larva L3 puffstage 7-9
 
 2877
white prepupae new
 
 2357
white prepupae 12hr
 
 3060
white prepupae 24hr
 
 11385
pupae 2d postWPP
 
 6711
pupae 3d postWPP
 
 4928
pupae 4d postWPP
 
 3585
adult male 01day
 
 2963
adult male 05day
 
 2696
adult male 30day
 
 2713
adult female 01day
 
 489
adult female 05day
 
 54
adult female 30day
 
 37
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to maximum FBgn0003886 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 44
embryo 02-04hr
 
 55
embryo 04-06hr
 
 59
embryo 06-08hr
 
 362
embryo 08-10hr
 
 752
embryo 10-12hr
 
 5353
embryo 12-14hr
 
 5328
embryo 14-16hr
 
 11335
embryo 16-18hr
 
 10033
embryo 18-20hr
 
 12580
embryo 20-22hr
 
 10128
embryo 22-24hr
 
 8504
larva L1
 
 10569
larva L2
 
 8954
larva L3 12hr old
 
 6084
larva L3 puffstage 1-2
 
 2458
larva L3 puffstage 3-6
 
 3019
larva L3 puffstage 7-9
 
 2877
white prepupae new
 
 2357
white prepupae 12hr
 
 3060
white prepupae 24hr
 
 11385
pupae 2d postWPP
 
 6711
pupae 3d postWPP
 
 4928
pupae 4d postWPP
 
 3585
adult male 01day
 
 2963
adult male 05day
 
 2696
adult male 30day
 
 2713
adult female 01day
 
 489
adult female 05day
 
 54
adult female 30day
 
 37
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 44
embryo 02-04hr
 
 55
embryo 04-06hr
 
 59
embryo 06-08hr
 (362)
embryo 08-10hr
 (752)
embryo 10-12hr
 (5353)
embryo 12-14hr
 (5328)
embryo 14-16hr
 (11335)
embryo 16-18hr
 (10033)
embryo 18-20hr
 (12580)
embryo 20-22hr
 (10128)
embryo 22-24hr
 (8504)
larva L1
 (10569)
larva L2
 (8954)
larva L3 12hr old
 (6084)
larva L3 puffstage 1-2
 (2458)
larva L3 puffstage 3-6
 (3019)
larva L3 puffstage 7-9
 (2877)
white prepupae new
 (2357)
white prepupae 12hr
 (3060)
white prepupae 24hr
 (11385)
pupae 2d postWPP
 (6711)
pupae 3d postWPP
 (4928)
pupae 4d postWPP
 (3585)
adult male 01day
 (2963)
adult male 05day
 (2696)
adult male 30day
 (2713)
adult female 01day
 (489)
adult female 05day
 
 54
adult female 30day
 
 37
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 44
embryo 02-04hr
 
 55
embryo 04-06hr
 
 59
embryo 06-08hr
 
 362
embryo 08-10hr
 
 752
embryo 10-12hr
 (5353)
embryo 12-14hr
 (5328)
embryo 14-16hr
 (11335)
embryo 16-18hr
 (10033)
embryo 18-20hr
 (12580)
embryo 20-22hr
 (10128)
embryo 22-24hr
 (8504)
larva L1
 (10569)
larva L2
 (8954)
larva L3 12hr old
 (6084)
larva L3 puffstage 1-2
 2458
larva L3 puffstage 3-6
 (3019)
larva L3 puffstage 7-9
 (2877)
white prepupae new
 2357
white prepupae 12hr
 (3060)
white prepupae 24hr
 (11385)
pupae 2d postWPP
 (6711)
pupae 3d postWPP
 (4928)
pupae 4d postWPP
 (3585)
adult male 01day
 (2963)
adult male 05day
 (2696)
adult male 30day
 (2713)
adult female 01day
 
 489
adult female 05day
 
 54
adult female 30day
 
 37
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 44
embryo 02-04hr
 
 55
embryo 04-06hr
 
 59
embryo 06-08hr
 
 362
embryo 08-10hr
 
 752
embryo 10-12hr
 
 5353
embryo 12-14hr
 
 5328
embryo 14-16hr
 11335
embryo 16-18hr
 10033
embryo 18-20hr
 12580
embryo 20-22hr
 10128
embryo 22-24hr
 
 8504
larva L1
 10569
larva L2
 
 8954
larva L3 12hr old
 
 6084
larva L3 puffstage 1-2
 
 2458
larva L3 puffstage 3-6
 
 3019
larva L3 puffstage 7-9
 
 2877
white prepupae new
 
 2357
white prepupae 12hr
 
 3060
white prepupae 24hr
 11385
pupae 2d postWPP
 
 6711
pupae 3d postWPP
 
 4928
pupae 4d postWPP
 
 3585
adult male 01day
 
 2963
adult male 05day
 
 2696
adult male 30day
 
 2713
adult female 01day
 
 489
adult female 05day
 
 54
adult female 30day
 
 37
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 44
embryo 02-04hr
 
 55
embryo 04-06hr
 
 59
embryo 06-08hr
 
 362
embryo 08-10hr
 
 752
embryo 10-12hr
 
 5353
embryo 12-14hr
 
 5328
embryo 14-16hr
 
 11335
embryo 16-18hr
 
 10033
embryo 18-20hr
 
 12580
embryo 20-22hr
 
 10128
embryo 22-24hr
 
 8504
larva L1
 
 10569
larva L2
 
 8954
larva L3 12hr old
 
 6084
larva L3 puffstage 1-2
 
 2458
larva L3 puffstage 3-6
 
 3019
larva L3 puffstage 7-9
 
 2877
white prepupae new
 
 2357
white prepupae 12hr
 
 3060
white prepupae 24hr
 
 11385
pupae 2d postWPP
 
 6711
pupae 3d postWPP
 
 4928
pupae 4d postWPP
 
 3585
adult male 01day
 
 2963
adult male 05day
 
 2696
adult male 30day
 
 2713
adult female 01day
 
 489
adult female 05day
 
 54
adult female 30day
 
 37
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

FlyAtlas Anatomical Expression Data for FBgn0003886


   Styles
Linear
Logarithmic
Heatmap
Back-to-back
   Scales
max expr for FBgn0003886
Moderate expression bin max
High level expression bin max
Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult testis.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (1000 - 25000)

Linear, scaled to maximum FBgn0003886 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 5.175
Larval Midgut
 
 2.2
Larval Hindgut no informative data
Larval Malpighian Tubules
 
 4.2
Larval Fat Body no informative data
Larval Salivary Gland no informative data
Larval Trachea
 
 43
Larval Carcass
 
 512.15
Adult Head
 
 7.1
Adult Eye
 
 3.6
Adult Brain
 
 4.1
Adult Thoracic-Abdominal Ganglion no informative data
Adult Crop no informative data
Adult Midgut
 
 2.5
Adult Hindgut
 
 2.5
Adult Malpighian Tubules
 
 2.8
Adult Fat Body
 
 8.1
Adult Salivary Gland
 
 8.4
Adult Heart
 
 1.825
Adult VirginFemale Spermatheca
 
 6.8
Adult InseminatedFemale Spermatheca
 
 3.9
Adult Ovary
 
 4.9
Adult Testis
 
 361.6
Adult Male Accessory Gland no informative data
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 5.175
Larval Midgut
 
 2.2
Larval Hindgut no informative data
Larval Malpighian Tubules
 
 4.2
Larval Fat Body no informative data
Larval Salivary Gland no informative data
Larval Trachea
 
 43
Larval Carcass
 512.15
Adult Head
 
 7.1
Adult Eye
 
 3.6
Adult Brain
 
 4.1
Adult Thoracic-Abdominal Ganglion no informative data
Adult Crop no informative data
Adult Midgut
 
 2.5
Adult Hindgut
 
 2.5
Adult Malpighian Tubules
 
 2.8
Adult Fat Body
 
 8.1
Adult Salivary Gland
 
 8.4
Adult Heart
 
 1.825
Adult VirginFemale Spermatheca
 
 6.8
Adult InseminatedFemale Spermatheca
 
 3.9
Adult Ovary
 
 4.9
Adult Testis
 
 361.6
Adult Male Accessory Gland no informative data
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 5.175
Larval Midgut
 
 2.2
Larval Hindgut no informative data
Larval Malpighian Tubules
 
 4.2
Larval Fat Body no informative data
Larval Salivary Gland no informative data
Larval Trachea
 
 43
Larval Carcass
 
 512.15
Adult Head
 
 7.1
Adult Eye
 
 3.6
Adult Brain
 
 4.1
Adult Thoracic-Abdominal Ganglion no informative data
Adult Crop no informative data
Adult Midgut
 
 2.5
Adult Hindgut
 
 2.5
Adult Malpighian Tubules
 
 2.8
Adult Fat Body
 
 8.1
Adult Salivary Gland
 
 8.4
Adult Heart
 
 1.825
Adult VirginFemale Spermatheca
 
 6.8
Adult InseminatedFemale Spermatheca
 
 3.9
Adult Ovary
 
 4.9
Adult Testis
 
 361.6
Adult Male Accessory Gland no informative data
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 5.175
Larval Midgut
 
 2.2
Larval Hindgut no informative data
Larval Malpighian Tubules
 
 4.2
Larval Fat Body no informative data
Larval Salivary Gland no informative data
Larval Trachea
 
 43
Larval Carcass
 
 512.15
Adult Head
 
 7.1
Adult Eye
 
 3.6
Adult Brain
 
 4.1
Adult Thoracic-Abdominal Ganglion no informative data
Adult Crop no informative data
Adult Midgut
 
 2.5
Adult Hindgut
 
 2.5
Adult Malpighian Tubules
 
 2.8
Adult Fat Body
 
 8.1
Adult Salivary Gland
 
 8.4
Adult Heart
 
 1.825
Adult VirginFemale Spermatheca
 
 6.8
Adult InseminatedFemale Spermatheca
 
 3.9
Adult Ovary
 
 4.9
Adult Testis
 
 361.6
Adult Male Accessory Gland no informative data
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to maximum FBgn0003886 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 5.175
Larval Midgut
 
 2.2
Larval Hindgut no informative data
Larval Malpighian Tubules
 
 4.2
Larval Fat Body no informative data
Larval Salivary Gland no informative data
Larval Trachea
 
 43
Larval Carcass
 
 512.15
Adult Head
 
 7.1
Adult Eye
 
 3.6
Adult Brain
 
 4.1
Adult Thoracic-Abdominal Ganglion no informative data
Adult Crop no informative data
Adult Midgut
 
 2.5
Adult Hindgut
 
 2.5
Adult Malpighian Tubules
 
 2.8
Adult Fat Body
 
 8.1
Adult Salivary Gland
 
 8.4
Adult Heart
 
 1.825
Adult VirginFemale Spermatheca
 
 6.8
Adult InseminatedFemale Spermatheca
 
 3.9
Adult Ovary
 
 4.9
Adult Testis
 
 361.6
Adult Male Accessory Gland no informative data
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 5.175
Larval Midgut
 
 2.2
Larval Hindgut no informative data
Larval Malpighian Tubules
 
 4.2
Larval Fat Body no informative data
Larval Salivary Gland no informative data
Larval Trachea
 
 43
Larval Carcass
 512.15
Adult Head
 
 7.1
Adult Eye
 
 3.6
Adult Brain
 
 4.1
Adult Thoracic-Abdominal Ganglion no informative data
Adult Crop no informative data
Adult Midgut
 
 2.5
Adult Hindgut
 
 2.5
Adult Malpighian Tubules
 
 2.8
Adult Fat Body
 
 8.1
Adult Salivary Gland
 
 8.4
Adult Heart
 
 1.825
Adult VirginFemale Spermatheca
 
 6.8
Adult InseminatedFemale Spermatheca
 
 3.9
Adult Ovary
 
 4.9
Adult Testis
 
 361.6
Adult Male Accessory Gland no informative data
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 5.175
Larval Midgut
 
 2.2
Larval Hindgut no informative data
Larval Malpighian Tubules
 
 4.2
Larval Fat Body no informative data
Larval Salivary Gland no informative data
Larval Trachea
 
 43
Larval Carcass
 
 512.15
Adult Head
 
 7.1
Adult Eye
 
 3.6
Adult Brain
 
 4.1
Adult Thoracic-Abdominal Ganglion no informative data
Adult Crop no informative data
Adult Midgut
 
 2.5
Adult Hindgut
 
 2.5
Adult Malpighian Tubules
 
 2.8
Adult Fat Body
 
 8.1
Adult Salivary Gland
 
 8.4
Adult Heart
 
 1.825
Adult VirginFemale Spermatheca
 
 6.8
Adult InseminatedFemale Spermatheca
 
 3.9
Adult Ovary
 
 4.9
Adult Testis
 
 361.6
Adult Male Accessory Gland no informative data
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 5.175
Larval Midgut
 
 2.2
Larval Hindgut no informative data
Larval Malpighian Tubules
 
 4.2
Larval Fat Body no informative data
Larval Salivary Gland no informative data
Larval Trachea
 
 43
Larval Carcass
 
 512.15
Adult Head
 
 7.1
Adult Eye
 
 3.6
Adult Brain
 
 4.1
Adult Thoracic-Abdominal Ganglion no informative data
Adult Crop no informative data
Adult Midgut
 
 2.5
Adult Hindgut
 
 2.5
Adult Malpighian Tubules
 
 2.8
Adult Fat Body
 
 8.1
Adult Salivary Gland
 
 8.4
Adult Heart
 
 1.825
Adult VirginFemale Spermatheca
 
 6.8
Adult InseminatedFemale Spermatheca
 
 3.9
Adult Ovary
 
 4.9
Adult Testis
 
 361.6
Adult Male Accessory Gland no informative data
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut no informative data
Larval Malpighian Tubules
 
 
Larval Fat Body no informative data
Larval Salivary Gland no informative data
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion no informative data
Adult Crop no informative data
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body
 
 
Adult Salivary Gland
 
 
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland no informative data
Adult Carcass no informative data

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 7.1
 
NA 
Eye
 
 3.6
 
NA 
Brain
 
 4.1
 
5.175 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 no informative data
 
NA 
Crop
 
 no informative data
 
2.2 
Midgut
 
 2.5
 
no informative data 
Hindgut
 
 2.5
 
4.2 
Malpighian Tubules
 
 2.8
 
no informative data 
Fat Body
 
 8.1
 
no informative data 
Salivary Gland
 
 8.4
 
NA 
Heart
 
 1.825
 
43 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 6.8
 
NA 
InseminatedFemale Spermatheca
 
 3.9
 
NA 
Ovary
 
 4.9
 
NA 
Testis
 
 361.6
 
NA 
Male Accessory Gland
 
 no informative data
 
512.15 
Carcass
 
 no informative data

modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Sterility
Allele
Phenotype manifest in
Allele
hide Classical Alleles ( 1 )
For All Classical Alleles Show

Allele of αTub85EClassMutagenStocksKnown lesion
αTub85Eunspecified
0 --
hide Alleles Carried on Transgenic Constructs ( 4 )
For All Alleles Carried on Transgenic Constructs Show

Allele of αTub85EClassMutagenStocksKnown lesion
αTub85EHM040091 Yes
αTub85EKK1095991 Yes
αTub85EGD142260 Yes
αTub85EβTub85D.PH0 Yes
hide Aneuploid Aberrations
Disrupted in
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
reporter construct
Insertions
Type of insertions
Name
Expression data
hide Gene Ontology: Function, Process & Cellular Component ( 13 unique terms )
hide Terms Based on Experimental Evidence ( 4 terms )
Molecular Function ( 0 terms)
Biological Process
CV term
References
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
Cellular Component ( 0 terms)
hide Terms Based on Predictions or Assertions ( 9 terms )
Molecular Function
CV term
References
inferred from sequence or structural similarity
Biological Process
CV term
References
Cellular Component
CV term
References
inferred from electronic annotation with InterPro:IPR000217, InterPro:IPR002452, InterPro:IPR017975
inferred from sequence or structural similarity
non-traceable author statement
hide Sequence Ontology: Class of Gene
hide Interactions & Pathways
hide Summary of Physical Interactions
Protein-protein
Interacting group
Assay
References
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
αTub85E allele
Gene
References
hide External Data
Linkouts
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs
Linkouts
InParanoid A subset of ortholog calls from InParanoid.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 2 )
Bloomington
VDRC
hide Genomic Clones ( 2 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 178 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
hide RNAi & Array Information
Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
hide Antibody Information
polyclonal
hide Other Information
hide Discoverer
hide Etymology
hide Identification
hide Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
hide Other Comments
RNAi screen using dsRNA made from templates generated with primers directed against this gene in S2 cell results in dim staining of microtubules, and a short monopolar spindle. This phenotype can be observed when the screen is performed with or without Cdc27 dsRNA.
RNAi generated by PCR using primers directed to this gene causes a cell growth and viability phenotype when assayed in Kc167 and S2R+ cells.
RNAi screen using dsRNA made from templates generated with primers directed against this gene causes a cell growth and viability phenotype when assayed in Kc167 and S2R+ cells.
In a sample of 79 genes with multiple introns, 33 showed significant heterogeneity in G+C content among introns of the same gene and significant positive correspondence between the intron and the third codon position G+C content within genes. These results are consistent with selection acting against preferred codons at the start of genes.
Though αTub84B and αTub85E are very similar in sequence they are functionally distinct. αTub85E can provide function in the male germ line fr generic microtubule arrays but lacks a subset of the functional properties possessed by necessary for specific features of microtubule assembly unique to the male germ cells.
Identified in 2D gels of CMW W2 wing imaginal disc cell proteins.
The tissue specific pattern of αTub85E protein accumulation is identified by isotope specific antibody.
The expression of βTub60D is accompanied by a coordinate transient increase in the level of synthesis of the embryonic α-tubulins, thereby maintaining an approximately equimolar synthesis of α- and β-tubulins throughout embryogenesis.
In D.melanogaster, two multigene families, each made up of four members, code for α- and β-tubulins. Tubulins are a highly conserved family of proteins that are the main structural components of microtubules in mitotic and meiotic spindles, cilia, flagella, neural processes and the cytoskeleton; nontubulin proteins (MAPS or microtubule-associated proteins) are involved along with tubulins in the formation of specialized microtubules (FBrf0045282; FBrf0046966). αTub85E is the only α-tubulin not expressed maternally. Transcripts present from 6-8 hr through adult. Protein found in support cells of chordotonal organs, developing muscles and somatic component of the testis (FBrf0049502). In adults expression of αTub85E is male-specific (FBrf0045282).
 
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Linkouts
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InParanoid A subset of ortholog calls from InParanoid.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Synonyms & Secondary IDs ( 32 )
Reported As
Symbol Synonym
α2t
 
αTub84E
Name Synonym
alpha-tubulin
α2tubulin
α85E-tubulin
α-tubulin 85E
α-Tubulin at 85E
 
Secondary FlyBase IDs
hide References ( 151 )
Generate a list of
List References by type
hide Recent research papers ( 7 )
Cachero et al., 2011, PLoS Biol. 9(1): e1000568
The gene regulatory cascade linking proneural specification with differentiation in Drosophila sensory neurons. [FBrf0212891]
Meyer et al., 2011, Curr. Biol. 21(6): 485--491
Interkinetic nuclear migration is a broadly conserved feature of cell division in pseudostratified epithelia. [FBrf0213254]
Sharma et al., 2011, Chemosphere 82(3): 370--376
Transcriptome analysis provides insights for understanding the adverse effects of endosulfan in Drosophila melanogaster. [FBrf0212610]
Weake et al., 2011, Genes Dev. 25(14): 1499--1509
Post-transcription initiation function of the ubiquitous SAGA complex in tissue-specific gene activation. [FBrf0214372]
Fichelson et al., 2010, Development 137(5): 815--824
lethal giant larvae is required with the par genes for the early polarization of the Drosophila oocyte. [FBrf0209930]
Klein et al., 2010, Dev. Biol. 337(2): 458--470
The proprioceptive and contractile systems in Drosophila are both patterned by the EGR family transcription factor Stripe. [FBrf0209777]
Müller et al., 2010, EMBO J. 29(19): 3344--3357
Proteomic and functional analysis of the mitotic Drosophila centrosome. [FBrf0212030]
hide Recent reviews (0)
All reviews listed in FlyBase were published before 2010