A Database of Drosophila Genes & Genomes

FB2008_06, released July 3, 2008
 

Gene Dmel\w

General Information
SymbolDmel\wSpeciesD. melanogaster
NamewhiteAnnotation symbolCG2759
Feature typeprotein_coding_geneFlyBase IDFBgn0003996
Created / Updated2003-12-01/2003-12-01
Genomic Location
Chromosome (arm)XRecombination map1-1.5
Cytogenetic map 3B6-3B6 Sequence locationX:2,684,632..2,690,499 [-]
Map ( GBrowse ) detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
The gene white is referred to in FlyBase by the symbol w (CG2759, FBgn0003996). It has the cytological map location 3B6. Its sequence location is X:2684632..2690499. Its molecular function is described as: ATPase activity, coupled to transmembrane movement of substances; eye pigment precursor transporter activity; transmembrane receptor activity; ATP binding. It is involved in the biological processes: eye pigment precursor transport; ommochrome biosynthetic process; eye pigment biosynthetic process; eye pigment metabolic process; transport. 1675 alleles are reported. The phenotypes of these alleles are annotated with: pigment cell; ocellus pigment granule; testis pigment cell; Malpighian tubule; eye; ocellus; testis; ommatidium; larval Malpighian tubule; main segment of Malpighian tubule. It has one annotated transcript and one annotated polypeptide.

hide Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
Gene/Allele symbols may differ from current usage
*e(g): enhancer of garnet
Apparently wild type but, in combination with g, produces a more orange eye than g alone. RK3.
w: white
The white locus is involved in the production and distribution of ommochrome (brown) and pteridine (red) pigments found in the compound eyes and ocelli of adult flies as well as the pigments in adult testis sheaths and larval Malpighian tubules; the specific function of the protein it encodes is still unknown, but it is believed to be a membrane-associated ATP-binding transport protein for pigment precursors in both the ommochrome and pteridine pathways (Sullivan and Sullivan, 1975; Mount, 1987; Dreesen et al., 1988; Tearle et al., 1989). w1 was the first mutant found in Drosophila melanogaster (Morgan, 1910; Morgan and Bridges, 1916). Mutant alleles do not appreciably affect the viability and fertility of the flies. Extreme white alleles as well as white deficiencies remove both brown and red pigments, the w1 allele having very little, if any, pteridine (Hadorn and Mitchell, 1951); isoxanthopterin is present in considerable quantity during pupation but is eliminated during the first three days of adult life (Hadorn, 1954, Experientia 10: 483-84). Hypomorphic alleles are visibly lighter in combination with w1 than when present as homozygotes. Intermediate white alleles result in partial loss of ommochromes and pteridines; some alleles also affect the distribution of these pigments in the compound eyes (Lewis, 1956; Green, 1959a, 1959c). Although the mutants are positively phototactic, they show no optomotor responses (Kalmus, 1943, J. Genet. 45: 206-13). Wild-type alleles are incompletely dominant over mutant alleles, w/w+ heterozygotes, though visibly indistinguishable from w+/w+, have less red pigment (Muller, 1935; Ziegler-Gunder and Hadorn, 1958; Green, 1959b). Mutant larval disks transplanted into wild-type host develop autonomously (Beadle and Ephrussi, 1936). Early genetic studies identified mutations separable by intralocus recombination into at least seven groups spanning 0.03 cm (Lewis, 1952; MacKendrick and Pontecorvo, 1952; Green, 1959a; Judd, 1959). Mutants occupying the centromere-proximal sites apparently play a regulatory role (Judd, 1976). Subsequent molecular analysis has localized the proximal mutations to the 5' end of the transcription unit (we) and the upstream flanking sequences (wsp) (Judd, 1987). Mutations at the distal sites have been mapped to the protein coding exons and the introns between them. The proximally-located regulatory mutants (we, for example) do not show dosage compensation; they suppress the zeste gene, and some of them (the wsp alleles) affect the distribution of the red and brown screening pigments of the eyes. Most of the distally-located structural mutants show dosage compensation, wa/Y males having the same eye color as wa/wa females, and do not suppress (but may interact with) zeste. Green (1959a) found that wi fails to show dosage compensation and does not suppress zeste; but wh exhibits both zeste suppression and dosage compensation. In spite of their heterogeneity, the alleles at the white locus fail to complement each other except for wsp which partially complements all other w alleles except in the presence of za [Babu and Bhat, 1980, Development and Neurobiology of Drosophila, (Siddiqi, Babu, Hall, and Hall, eds.). Plenum Press, New York and London, pp. 35-40)]. Some white alleles (wc for example) are extremely unstable (Green, 1976); w1 is slightly unstable, giving rise to we and wh, mutants with darker eyes than w1. The locus is characterized by asymmetrical recombination involving transposons; the mutants wr,def and wr,dup are the result of such exchange (Davis et al., 1987). Some P-element white transformations show reproducible patterns of pigmentation which can be altered by the trans-acting gene zeste (Rubin et al., 1985).
wm: white-mottled
There are many w alleles that show variegated eye color. The wm mutants most commonly used for variegation studies are wm4 and wm264-58. In these alleles, extra heterochromatin partially suppresses eye mottling (Gowen and Gay, 1933, Proc. Nat. Acad. Sci. USA 19: 122-26; Koliantz, Hartmann-Goldstein, and Fuller, 1984, Heredity 52: 203-13; Koliantz and Hartmann-Goldstein, 1984, Heredity 53: 215-22; Baker and Spofford, 1959, Univ. Texas Publ. 5914: 135-54; Spofford, 1959, Proc. Nat. Acad. Sci. USA 45: 1003-07). In wm264-58, variegation less (more wild-type in color) in homozygous females than in heterozygous females. Color variegation found in the testis-sheath as well as the eyes of wm264-58 male flies (Baker, 1968, Adv. Genet. 14: 133-169). In some lines, less variegation when paternally inherited; in others, less variegation when maternally inherited or no parental effect. Mottling in wm4 and wm4h is enhanced by E(var)7 and E(var)c101 (Reuter and Wolff, 1981, Mol. Gen. Genet. 182: 516-19); mottling in wm4 and wm264-58 is suppressed by Su(var) (Spofford, 1962, Genetics 47: 986-87) and a number of other suppressor mutations (Reuter and Wolff, 1981).
wa: white-apricot
Placed on the genetic map of white to the right of wbf and the left of wch. The amount of pigment formed by wa is a function of gene dose: wa/- female < wa/Y male = wa/wa female < wa/wa/wa female < wa/wa male (Muller, 1932). A wa optic disk transplanted into a wild-type host shows autonomous eye color development (Beadle and Ephrussi, 1936). Deficiencies and duplications for wa can be produced as a result of nonhomologous exchanges within the white region. wa gives rise to partial revertants, as wr (Muller), waM (Mossige), and wa57i (Green). Eye color is modified in certain mutant combinations. wa;bw is slightly lighter than wa. wa;st is light pinkish yellow (Mainx, 1938) as is wa v. z wa is lighter than either mutant alone, only slightly darker than wbf (Green, 1959a). wa rb and wa g have nearly white eyes; wa wch, wbf wa, and wa in combination with su(f) all have white eyes. su(wa) wa and su(wa)G wa have browner eyes than wa. The triple mutant su(wa) wa su(f) has eyes only slightly lighter than wa (Levis et al., 1984). wBwx wa is like wa (Judd). wa/+ has lighter eyes than +/+ in v homozygotes (Braver, 1953); Tp(2;3)P darkens wa. Transpositions of wa and the neighboring gene rst+ have been isolated at more than 120 sites in the genome [Ising and Ramel, 1976, The Genetics and Biology of Drosophila (Ashburner and Novitski, eds.). Academic Press, London, New York, San Francisco, Vol. 1b, pp. 947-54].
wbf: white-buff
Occupies a recombination site between wBwx and wa (Judd, 1959). Spontaneous reversions reported by Redfield (1952, DIS 26: 28). wbf; st has white eyes (Mainx, 1938, Z. Indukt. Abstamm. Vererbungsl. 75: 256-76). Eyes of wbf rb and wbf g are lighter than the eyes of wbf, rb, or g (Green, 1959a).
wbl: white-blood
Located distal to w (MacKendrick and Pontecorvo, 1952) and we (Judd, 1958; Green, 1959a). At 19, eye color as dark as pn; at 30, as light as wbf or wi; sensitivity greatest 40-48 hr after pupation (Ephrussi and Herold, 1945, Genetics 30: 62-70).
wBwx: white-Brownex
Located distal to wbf (Judd, 1957, 1959). Reduces recombination in the y-spl interval. Heterozygotes between wBwx and other white alleles or deficiencies are indistinguishable in eye color from wBwx/wBwx. The double mutant wBwx wcol is lighter than either single mutant, but wBwx/wa and wBwx/wbf are indistinguishable from wa and wbf, respectively.
wc: white-crimson
Maps at the same site as wa. Derivatives of wc may be stable (w+ for example) or mutable (such as wdc and wdi) and include both point mutations and deficiencies (Green, 1967, Genetics 56: 467-82). The mutations take place in both males and females, may occur in clusters, and do not appear to involve recombination. Transpositions of a segment of the w gene that includes wc to different locations on the third chromosome have been recovered and are mutable (Green, 1969, Genetics 61: 423-28; Green, 1976).
wcf: white-coffee
Located near wBwx and just distal to wa (Welshons and Nicoletti, 1963, DIS 38: 80). Females heterozygous for wcf and w, wa, wco, wch, wbl, wcol, or wsat have eye color of wcf homozygous females. wcf/+ flies wild-type.
wch: white-cherry
Occupies site proximal to wa and distal to wsp (Lewis, 1956). Eyes light in double mutant with rb or g, white with wa. Enhanced by P and e(we); suppressed by Su(wch), making eyes brownish (Rasmuson, 1970, Hereditas 65: 83-96).
wco: white-coral
Located distal to w1 (MacKendrick and Pontecorvo, 1952). Enhanced by e(we); lightens rb and g (Green, 1959a). wco;st has yellow eyes (Mainx, 1938).
wDZL: white-Dominant-zeste-like
wDZL is located in or immediately proximal to the rightmost set of previously-defined white mutant sites (Bingham, 1981). While this mutant affects the pigmentation of the eyes, it has no effect on the color of the larval Malpighian tubules or the testis sheath of adult males. wDZL shows synapsis-dependent dominance over w+. It is a highly mutable allele (like wc), giving rise spontaneously to w+ and w- derivatives with a frequency of 0.5-1.5%. Interactions between wDZL and z are summarized in the allele table. It was observed that, when carrying the wild-type allele of z, wDZL/w- females have brown eyes; with z1, however, hemizygous wDZL females have yellow eyes (Bingham, 1980, Genetics 95: 341-53).
we: white-eosin
Placed proximal to wa (Green, 1959a). Amount of pigment formed by we not a function of gene dose: we female = we male < we/we male = we/we female < we/we/we female (Muller, 1932). Mutant enhanced by P, cru, and whg as well as by E(we). Lightens rb and g (Green, 1959a). A we optic disk transplanted into a wild-type host shows autonomous eye color development (Beadle and Ephrussi, 1936).
wi: white-ivory
Placed on the genetic map distal to w1 (MacKendrick, 1953, DIS 27: 100). wi is unstable, reverting spontaneously to w+ with a frequency of 5x10-5 in wi/wi females and 5x10-6 in wi/Y males and wi/Df(1)w females (Lewis, 1959, Genetics 44: 522; Bowman, 1965, Genetics 52: 1069-79). The frequency of germinal reversions and of somatic reversions in larval eye tissue is increased by X rays (Lewis, 1959; Bowman and Green, 1964, Genetics 50: 237). No dosage compensation shown by the mutant (Green 1959a). Recombination between flanking w alleles reduced in wi, but restored in its revertants (Bowman, 1965; Bowman and Green, 1966, Genetica 37: 7-16).
wsp: white-spotted
Located proximal to wch and distal to wDZL. wsp affects that deposition of the eye pigments, resulting in a variegated phenotype, but does not affect the pigmentation of the larval Malpiphian tubules. Testis pigmentation varies with different alleles, wsp3 males having unpigmented testes, but wsp1 and wsp2 males showing enhanced testis pigmentation (Davison et al., 1985; Pirrotta, Stellar, and Bozzetti, 1985, EMBO J. 4: 3501-08; Judd, 1987). Partial complementation occurs between wsp alleles and certain other w mutations when they are synapsed; for example, wsp/w, wsp/wch, and wsp/wa females have homogeneous brown eyes (Green, 1959a). The double mutants wa wsp and wch wsp have white and pale yellow eyes, respectively. wsp, when heterozygous with a deficiency for all or part of the w locus, produces a phenotype like that of wsp homozygotes (Green, 1959c). In the presence of z1, two synapsed copies of wsp in trans (or tandemly repeated) result in yellow-eyed females; z1 females with one copy of wsp have wild-type eye color. A specific regulator of the wsp eye phenotype, su(wsp), has been isolated as a partial revertant of wsp1 (Chapman and Bingham, 1985); this suppressor restores wild-type eye color to wsp1, wsp2, wsp3, and wsp4 flies, but not to the wsp81d mutant (Davison et al., 1985).
wzm: white-zeste mottled
wzm is located to the right of wa and to the left of w1. It is an unstable white allele, mutating to derivatives, most of which are unstable (Judd, 1963, Proc. Int. Congr. Genet. 11th, Vol. 1: 3-4; 1964, DIS 39: 60). Since all z+ wzm males (as well as z+ wzm/z+ wzm females) have wild-type eye color, the mutant z was used as an indicator of the mutability of wzm strains. Derivatives of wzm (Kalisch and Becker, 1970, Mol. Gen. Genet. 107: 321-35) include wzl (from the z wzm stock), wzmz (from the z wzm stock), and wzmzrb, wzmzz and wzmzw (from the z wzmz stock). Only wzl is stable. The mutants were often recovered in clusters. wzmz reverts to wzm+ (eye color between z wzm and z w+) and the white-eyed wzmzz and ww. Other derivatives (wz, wzh, wzs) were recovered by Judd (1957; 1969, Genetics 61: s29).
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
3B6-3B6  
Limits computationally determined from genome sequence between P{EP}EP1362 and P{EP}dncEP1395  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
3C2-3C2
(determined by in situ hybridisation)  
3C2-3C2
(determined by in situ hybridisation)  
3C-3C
(determined by in situ hybridisation)  
3C-3C
(determined by in situ hybridisation)  
3C-3C
(determined by in situ hybridisation)  
3B2-3C2
(determined by in situ hybridisation)  
3C1-3C2
(determined by in situ hybridisation)  
3C1-3C2
(determined by in situ hybridisation)  
3C1-3C2
(determined by in situ hybridisation)  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
wcf2 maps in the far left portion of the w locus, 0.019 map units from w1 and wh.
Alleles wdp and wdp2 map to the left of wch.
Molecular Map Data
Gene Order (in direction of increasing cytology)
References
In direction of increasing cytology: crm- w?
In direction of increasing cytology: CG32795- w-
Gene Order (overall orientation not stated)
References
Overall orientation not stated: w+ CG32795+
hide Gene Model & Products
Please see the GBrowse view of Dmel\w for information on other features
detailed view FBtr0070492 FBtr0070491 FBtr0070493 FBtr0070490 FBpp0070470 FBpp0070469 FBpp0089092 FBpp0070468 FBti0036731 FBti0034132 FBti0036451 FBti0011924 FBti0071179 FBti0024810 FBti0059130 FBti0028617 FBti0046609 FBti0033537 FBti0028051 FBti0028115 FBti0038903 FBti0036518 FBti0028500 FBti0071627 FBti0067718 FBti0047160 FBti0067811 FBti0100798 FBti0028589 FBti0028417 FBti0011710 FBti0071130 FBti0033974 FBti0036648 FBti0035288 FBti0028392 FBti0058866 FBti0029321 FBti0057053 FBti0069302 FBti0030302 FBti0028403 FBti0058859 FBti0029704 FBti0021358 FBti0029557 FBti0016433 FBti0034753 FBti0029995 FBti0016461 FBti0069870 FBti0100864 FBti0042629 FBti0066148 FBti0029317 FBti0043908 FBti0036262 FBti0035372 FBti0034094 FBti0050142 FBti0036739 FBti0036414 FBti0055730 FBti0066756 FBti0067472
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0070490
  2352
  687
Additional Transcript Data & Comments
Reported size (kB)
2.212 (sequence analysis)
5.7, 2.6, 1.75 (northern blot)
8.0, 7.9, 2.6 (northern blot)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kD)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
w-PA  
FBpp0070468  
75.7  
687  
8.76  
Additional Polypeptide Data & Comments
Reported size (kD)
Comments
External Data
Linkouts
PANTHER - Protein classification by function, families, and pathways
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
TRANSFAC - Eukaryotic transcription factors, their genomic binding sites, and DNA-binding profiles
  • R01599
  • R04938
  • R04939
  • R04940
  • R04941
  • R04942
  • R04943
  • R04944
  • R04945
  • R04946
  • R04947
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
 
 
 
 
 
 
 
 
 
 
 
 
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
    Maps to
    Does NOT map to
    Identified with
    hide Mapped Features & Mutations
    Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here
    Type
    Symbol & Location
    Additional Notes
    References
    complex substitution
    comment=2.9kb duplication; location on genomic sequence from FBrf0041384 and GB:X02974.
    evidence=experimental
    deletion
    comment=Deletion endpoints from FBrf0041384 and GB:X02974.
    evidence=experimental
    protein binding site
    w-protein_bind-1
    X:2,690,927..2,690,932
    bound_moiety=z-XP
    evidence=experimental
    protein binding site
    w-protein_bind-10
    X:2,691,824..2,691,839
    bound_moiety=z-XP
    evidence=experimental
    protein binding site
    w-protein_bind-11
    X:2,689,186..2,689,191
    bound_moiety=z-XP
    evidence=experimental
    protein binding site
    w-protein_bind-2
    X:2,689,234..2,689,245
    bound_moiety=z-XP
    evidence=experimental
    protein binding site
    w-protein_bind-3
    X:2,690,957..2,690,962
    bound_moiety=z-XP
    evidence=experimental
    protein binding site
    w-protein_bind-4
    X:2,690,654..2,690,659
    bound_moiety=z-XP
    evidence=experimental
    protein binding site
    w-protein_bind-5
    X:2,690,637..2,690,642
    bound_moiety=z-XP
    evidence=experimental
    protein binding site
    w-protein_bind-6
    X:2,691,693..2,691,698
    bound_moiety=z-XP
    evidence=experimental
    protein binding site
    w-protein_bind-7
    X:2,691,760..2,691,765
    bound_moiety=z-XP
    evidence=experimental
    protein binding site
    w-protein_bind-8
    X:2,691,723..2,691,728
    bound_moiety=z-XP
    evidence=experimental
    protein binding site
    w-protein_bind-9
    X:2,691,866..2,691,881
    bound_moiety=z-XP
    evidence=experimental
    rescue fragment
    comment=14.3kb genomic EcooR1 fragment; position of restriction fragment on reference sequence inferred by FlyBase curator.
    evidence=experimental
    linked_to=EcoRI-EcoRI_rfrag
    rescue fragment
    comment=Construct H from Figure 1; position of restriction fragment on reference sequence inferred by FlyBase curator.
    evidence=experimental
    linked_to=HpaI-BssHII_rfrag
    rescue fragment
    comment=Reported as a 10.7kb EcoRI KpnI fragment; 5' EcoRI site not present in reference genome due to polymorphism; location of 5' EcoRI site inferred from GB:X02974. Position of restriction fragment on reference sequence inferred by FlyBase curator.
    evidence=experimental
    linked_to=EcoRI-KpnI_rfrag
    rescue fragment
    comment=Reported as a 12.0kb EcoRI fragment; 5' EcoRI site not present in reference genome due to polymorphism; location of 5' EcoRI site inferred from GB:X02974. Position of restriction fragment on reference sequence inferred by FlyBase curator.
    evidence=experimental
    linked_to=EcoRI-EcoRI_rfrag
    rescue fragment
    comment=Reported as an 11.7kb EcoRI fragment; 5' EcoRI site not present in reference genome due to polymorphism; location of 5' EcoRI site inferred from GB:X02974. Position of restriction fragment on reference sequence inferred by FlyBase curator.
    evidence=experimental
    linked_to=EcoRI-EcoRI_rfrag
    rescue fragment
    comment=Construct D from Figure 1; position of restriction fragment on reference sequence inferred by FlyBase curator.
    evidence=experimental
    linked_to=HincII-KpnI_rfrag
    transposable element target site duplication
    comment=Insertion location from FBrf0041384 and GB:X02974.
    evidence=experimental
    transposable element target site duplication
    comment=Insertion location from FBrf0041384 and GB:X02974.
    evidence=experimental
    transposable element target site duplication
    comment=Insertion location from FBrf0041384 and GB:X02974.
    evidence=experimental
    transposable element target site duplication
    comment=Insertion location from FBrf0041384 and GB:X02974.
    evidence=experimental
    transposable element target site duplication
    comment=Insertion location from FBrf0041384 and GB:X02974.
    evidence=experimental
    transposable element target site duplication
    comment=Insertion location from FBrf0041384 and GB:X02974.
    evidence=experimental
    transposable element target site duplication
    comment=Insertion location from FBrf0041384 and GB:X02974.
    evidence=experimental
    transposable element target site duplication
    comment=Insertion location from FBrf0041384 and GB:X02974; 1 base polymorphism in target site in sequenced strain.
    evidence=experimental
    transposable element target site duplication
    copia{}w[hd81b11]
    X:2,685,571..2,685,575
    comment=Insertion location from FBrf0041384 and GB:X02974.
    evidence=experimental
    transposable element target site duplication
    P{6.1}w[hash-6]
    X:2,684,831..2,684,838
    comment=Insertion location from FBrf0041384 and GB:X02974.
    evidence=experimental
    transposable element target site duplication
    comment=Insertion location from FBrf0041384 and GB:X02974.
    evidence=experimental
    transposable element target site duplication
    comment=Insertion location from FBrf0041384 and GB:X02974.
    evidence=experimental
    hide External Data
    Linkouts
    DEDB - Drosophila exon database: splicing graphs
    Crossreferences
    EPD - Eukarytoic Promoter Database, an annotated collection of POL II promoters
    hide Expression Data
    FlyBase-Curated Data
    Transcript and
    Protein data
    Please see the FlyBase Gene Expression Report for details of gene expression from the literature.
    hide Summary of Transcript Expression
    Stage
    Tissue/Position
    Reference
     larval stage
     adult stage | female
     adult stage | male
     adult stage
    Marker for
      Subcellular Localization
      CV Term
      hide Summary of Polypeptide Expression
      Stage
      Tissue/Position
      Reference
      Marker for
        Subcellular Localization
        CV Term
        hide External Data & Images
        Linkouts
        FLIGHT - Cell culture data for RNAi and other high-throughput technologies
        FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
        GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies
        hide Alleles & Phenotypes
        hide Summary of Allele Phenotypes
        Lethality
        Allele
        Other Phenotypes
        Allele