FlyBase Gene Report: Dmel\Yp3

General Information

Symbol

Dmel\Yp3

Species

D. melanogaster

Name

Yolk protein 3

Annotation Symbol

CG11129

Feature Type

protein_coding_gene

FlyBase ID

FBgn0004047

Gene Model Status

Current

Stock Availability

5 publicly available

Gene Snapshot

Contributions welcome

Other Summaries

Alliance
Auto summary
Gene Group
UniProtKB
Red Book
Interactive Fly

Also Known As

YP, vitellogenin, yolk protein

Key Links

Genomic Location

Cytogenetic map

12C1-12C1

Sequence location

X:13,759,546..13,761,547 [+]

Recombination map

1-46

RefSeq locus

NC_004354 REGION:13759546..13761547

Sequence

Get Decorated FASTA

Genomic Maps

JBrowse GBrowse

Help me choose

Other Genome Views

The following external sites may use different assemblies or annotations than FlyBase.

Function

GO Summary Ribbons

Gene Ontology (GO) Annotations (10 terms)

Molecular Function (2 terms)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (2 terms)

CV Term

Evidence

References

enables carboxylic ester hydrolase activity

inferred from electronic annotation with InterPro:IPR000734

(assigned by InterPro )

(FlyBase Curators et al., 2004-)

enables lipase activity

inferred from biological aspect of ancestor with PANTHER:PTN000176726

(assigned by GO_Central )

(Gaudet et al., 2011)

Biological Process (5 terms)

Terms Based on Experimental Evidence (3 terms)

CV Term

Evidence

References

involved_in embryo development ending in birth or egg hatching

inferred from mutant phenotype

(assigned by UniProt )

(Liddell and Bownes, 1991)

involved_in regulation of embryonic development

inferred from mutant phenotype

(Liddell and Bownes, 1991)

involved_in response to bacterium

inferred from high throughput expression pattern

(Levy et al., 2004)

Terms Based on Predictions or Assertions (2 terms)

CV Term

Evidence

References

involved_in lipid catabolic process

inferred from biological aspect of ancestor with PANTHER:PTN000176726

(assigned by GO_Central )

(Gaudet et al., 2011)

involved_in sex differentiation

non-traceable author statement

(Schutt and Nothiger, 2000)

Cellular Component (3 terms)

Terms Based on Experimental Evidence (2 terms)

CV Term

Evidence

References

located_in extracellular region

inferred from mutant phenotype

(assigned by UniProt )

(Liddell and Bownes, 1991)

located_in P granule

inferred from physical interaction with FLYBASE:tud; FB:FBgn0003891

(Thomson et al., 2008)

inferred from physical interaction with FLYBASE:vas; FB:FBgn0283442

(Thomson et al., 2008)

Terms Based on Predictions or Assertions (1 term)

CV Term

Evidence

References

located_in extracellular space

inferred from biological aspect of ancestor with PANTHER:PTN000176726

(assigned by GO_Central )

(Gaudet et al., 2011)

Gene Group (FlyBase)

OTHER CARBOXYLESTERASES

Protein Family (UniProt)

Belongs to the AB hydrolase superfamily. Lipase family. (P06607)

Protein Signatures (InterPro)

Summaries

Gene Group (FlyBase)

OTHER CARBOXYLESTERASES -: OTHER CARBOXYLESTERASES are carboxylesterases that do not fall into any other major carboxylesterase group.

Protein Function (UniProtKB)

Vitellogenin is the major yolk protein of eggs where it is used as a food source during embryogenesis.

(UniProt, P06607)

Phenotypic Description (Red Book; Lindsley and Zimm 1992)

fs(1)A1526

Few nuclear divisions resulting in polyploid groups of chromosomes or in deeply stained masses of chromatin.

Yp3

Structural gene for the yolk protein YP3 found in recently-emerged female flies. Protein migrates at different rates in SDS-polyacrylamide gels when encoded by the electrophoretic variants Yp3F (fast) and Yp3S (slow), alleles that are female fertile and produce normal amounts of YP3. Yp3RI, which maps close to the Yp3 locus, has no detectable YP3 protein in the hemolymph or ovary, but is not female sterile (Postlethwait and Jowett, 1980; Postlethwait and Shirk, 1981).

Gene Model and Products

Number of Transcripts

Number of Unique Polypeptides

Please see the JBrowse view of Dmel\Yp3 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)

Isoform displayed:

Pfam protein domains

InterPro name

classification

start

end

Protein Domains (via SMART)

Isoform displayed:

SMART protein domains

InterPro name

classification

start

end

Comments on Gene Model

Low-frequency RNA-Seq exon junction(s) not annotated.

Gene model reviewed during 5.45

Gene model reviewed during 5.56

Sequence Ontology: Class of Gene

nuclear_gene

protein_coding_gene

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Assoc. CDS (aa)

Yp3-RA

FBtr0073821

NM_078593

1488

420

Yp3-RB

FBtr0346090

NM_001298299

1868

420

Additional Transcript Data and Comments

Reported size (kB)

1.5 (longest cDNA)

(Garabedian et al., 1987)

1.54 (northern blot)

(Hung et al., 1982)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank

Yp3-PA

FBpp0073652

46.1

420

8.75

NP_511148

AAF48314

Yp3-PB

FBpp0311924

46.1

420

8.75

NP_001285228

AHN59698

Polypeptides with Identical Sequences

The group(s) of polypeptides indicated below share identical sequence to each other.

420 aa isoforms: Yp3-PA, Yp3-PB

Additional Polypeptide Data and Comments

Reported size (kDa)

420 (aa); 46.1 (kD predicted)

(Garabedian et al., 1987)

Comments

External Data

Post Translational Modification

Tyrosine sulfation occurs in the female only and plays an essential functional role.

(UniProt, P06607)

Crossreferences

InterPro - A database of protein families, domains and functional sites

Linkouts

Sequences Consistent with the Gene Model

Nucleotide / Polypeptide Records

UniProt

Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\Yp3 using the Feature Mapper tool.

External Data

Crossreferences

Linkouts

Expression Data

Expression Summary Ribbons

Colored tiles in ribbon indicate that expression data has been curated by FlyBase for that anatomical location. Colorless tiles indicate that there is no curated data for that location.

For complete stage-specific expression data, view the modENCODE Development RNA-Seq section under High-Throughput Expression below.

Transcript Expression

expression microarray

Stage

Tissue/Position (including subcellular localization)

Reference

adult stage | female

spermathecum

(Prokupek et al., 2009)

in situ

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage 9 -- 10

amnioserosa

(Fisher et al., 2012)

embryonic stage 13 -- 16

embryonic/larval midgut

(Fisher et al., 2012)

yolk nucleus

(Fisher et al., 2012)

oogenesis stage S9 -- S10

centripetal follicle cell

(Manning et al., 2017)

egg chamber | restricted

(Manning et al., 2017)

RT-PCR

Stage

Tissue/Position (including subcellular localization)

Reference

adult stage | male

testis

(Theofel et al., 2014)

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

mass spectroscopy

Stage

Tissue/Position (including subcellular localization)

Reference

day 5 of adulthood & male -- day 7 of adulthood & male

spermatozoon

(Wasbrough et al., 2010)

day 7 of adulthood -- day 49 of adulthood

adult heart

(Cammarato et al., 2011)

adult stage

adult head

• membrane

(Aradska et al., 2015)

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Evidence

References

located_in extracellular region

inferred from mutant phenotype

(assigned by UniProt )

(Liddell and Bownes, 1991)

located_in P granule

inferred from physical interaction with FLYBASE:tud; FB:FBgn0003891

(Thomson et al., 2008)

inferred from physical interaction with FLYBASE:vas; FB:FBgn0283442

(Thomson et al., 2008)

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

GBrowse - Visual display of RNA-Seq signals

View Dmel\Yp3 in GBrowse 2

RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region

View exonic expression by developmental stage for Dmel\Yp3

View exonic expression by tissue for Dmel\Yp3

Bulk Downloads

RNA-Seq RPKM values for all genes

Reference

See Gelbart and Emmert, 2013 for analysis details and data files for all genes.

Developmental Proteome: Life Cycle

Developmental Proteome: Embryogenesis

External Data and Images

Linkouts

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0004047

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

FBgn0004047

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

CG11129-RA

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG11129

Flygut - An atlas of the Drosophila adult midgut

FBgn0004047

Images

FlyExpress - Embryonic expression images (BDGP data)

Show all FlyExpress processed images for Dmel\Yp3

Stages(s) 13-16

FlyBase Wiki

Image Based Resources

Alleles, Insertions, and Transgenic Constructs

Classical and Insertion Alleles ( 8 )

For All Classical and Insertion Alleles Show

Other relevant insertions

Transgenic Constructs ( 9 )

For All Alleles Carried on Transgenic Constructs Show

Transgenic constructs containing/affecting coding region of Yp3

Transgenic constructs containing regulatory region of Yp3

Deletions and Duplications ( 1 )

Disrupted in

Df(1)Exel6247

(Ryder, 2004.4.26)

Phenotypes

For more details about a specific phenotype click on the relevant allele symbol.

Lethality

Allele

lethal

Yp3^GD16776

viable, with Dcr-2^UAS.cDa, Scer\GAL4^elav.PLu

Yp3^GD16776

viable, with Scer\GAL4^pnr-MD237

Yp3^GD16776

Other Phenotypes

Allele

electrophoretic variant

flight defective, with Scer\GAL4^Mef2.PR

Yp3^GD16776

neuroanatomy defective | larval stage

Yp3^GD16776

visible, with Scer\GAL4^pnr-MD237

Yp3^GD16776

Phenotype manifest in

Allele

ganglion mother cell | larval stage

Yp3^GD16776

larval neuroblast | larval stage

Yp3^GD16776

mesothoracic tergum, with Scer\GAL4^pnr-MD237

Yp3^GD16776

myofibril, with Scer\GAL4^Mef2.PR

Yp3^GD16776

trichogen cell, with Scer\GAL4^pnr-MD237

Yp3^GD16776

Orthologs

Downloads

Download All DIOPT Orthologs

Download All OrthoDB Orthologs

Human Orthologs (via DIOPT v8.0)

Homo sapiens (Human) (7)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Hsap\LIPI

3 of 15

Yes

2 of 15

2 of 15

2 of 15

2 of 15

2 of 15

1 of 15

Model Organism Orthologs (via DIOPT v8.0)

Mus musculus (laboratory mouse) (7)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Mmus\Lipi

3 of 15

Yes

2 of 15

2 of 15

2 of 15

2 of 15

1 of 15

1 of 15

Rattus norvegicus (Norway rat) (6)

Rnor\Lipi

3 of 13

Yes

Rnor\Pnlip

2 of 13

Rnor\Pnliprp1

2 of 13

Rnor\Liph

1 of 13

Yes

Rnor\Pla1a

1 of 13

Rnor\Pnliprp2

1 of 13

Xenopus tropicalis (Western clawed frog) (4)

Xtro\liph

2 of 12

Yes

Xtro\pnliprp2

1 of 12

Xtro\pnliprp2

1 of 12

Xtro\pnliprp3

1 of 12

Danio rerio (Zebrafish) (5)

Drer\lipia

2 of 15

Yes

Drer\lipib

2 of 15

Yes

Drer\lipca

1 of 15

Drer\LOC100331214

1 of 15

Drer\pla1a

1 of 15

Caenorhabditis elegans (Nematode, roundworm) (0)

No records found.

Arabidopsis thaliana (thale-cress) (0)

No records found.

Saccharomyces cerevisiae (Brewer's yeast) (0)

No records found.

Schizosaccharomyces pombe (Fission yeast) (0)

No records found.

Ortholog(s) in Drosophila Species (via OrthoDB v9.1) ( EOG091909PC )

Organism

Common Name

Gene

AAA Syntenic Ortholog

Multiple Dmel Genes in this Orthologous Group

Drosophila suzukii

Spotted wing Drosophila

Drosophila simulans

Drosophila sechellia

Drosophila erecta

Drosophila yakuba

Drosophila ananassae

Drosophila pseudoobscura pseudoobscura

Dpse\GA10778

Drosophila persimilis

Dper\GL19869

Drosophila willistoni

Dwil\GK10125

Drosophila virilis

Dvir\GJ18846

Drosophila mojavensis

Dmoj\GI15954

Drosophila grimshawi

Dgri\GH12799

Orthologs in non-Drosophila Dipterans (via OrthoDB v9.1) ( EOG091505WQ )

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Musca domestica

House fly

Mdoa\17019975

Musca domestica

House fly

Mdoa\17019979

Musca domestica

House fly

Mdoa\17007110

Musca domestica

House fly

Mdoa\17019976

Musca domestica

House fly

Mdoa\17006268

Musca domestica

House fly

Mdoa\17006270

Musca domestica

House fly

Mdoa\17004208

Musca domestica

House fly

Mdoa\17006269

Glossina morsitans

Tsetse fly

Gmor\GMOY002338

Glossina morsitans

Tsetse fly

Gmor\GMOY001661

Lucilia cuprina

Australian sheep blowfly

Lcup\FF38_11010

Lucilia cuprina

Australian sheep blowfly

Lcup\FF38_11008

Lucilia cuprina

Australian sheep blowfly

Lcup\FF38_11007

Lucilia cuprina

Australian sheep blowfly

Lcup\FF38_03537

Orthologs in non-Dipteran Insects (via OrthoDB v9.1) ( None identified )

No non-Dipteran orthologies identified

Orthologs in non-Insect Arthropods (via OrthoDB v9.1) ( None identified )

No non-Insect Arthropod orthologies identified

Orthologs in non-Arthropod Metazoa (via OrthoDB v9.1) ( None identified )

No non-Arthropod Metazoa orthologies identified

Paralogs

Downloads

Download All DIOPT Paralogs

Paralogs (via DIOPT v8.0)

Drosophila melanogaster (Fruit fly) (32)

Gene Symbol

Score

Source

Alignment

3 of 10

3 of 10

3 of 10

3 of 10

3 of 10

3 of 10

3 of 10

3 of 10

3 of 10

3 of 10

3 of 10

3 of 10

3 of 10

3 of 10

3 of 10

3 of 10

3 of 10

3 of 10

3 of 10

3 of 10

Yp1

3 of 10

Yp2

3 of 10

2 of 10

2 of 10

2 of 10

2 of 10

2 of 10

2 of 10

2 of 10

2 of 10

2 of 10

1 of 10

Human Disease Associations

FlyBase Human Disease Model Reports

Disease Model Summary Ribbon

Disease Ontology (DO) Annotations

Models Based on Experimental Evidence ( 0 )

Allele

Disease

Evidence

References

Potential Models Based on Orthology ( 0 )

Human Ortholog

Disease

Evidence

References

Modifiers Based on Experimental Evidence ( 0 )

Allele

Disease

Interaction

References

Disease Associations of Human Orthologs (via DIOPT v8.0 and OMIM)

Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.

Homo sapiens (Human)

Gene name

Score

OMIM

OMIM Phenotype

DO term

Complementation?

Transgene?

LIPI; lipase I

3 of 15

609252

Functional Complementation Data

Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.

Interactions

Summary of Physical Interactions

esyN Network Diagram

Interactions Browser

View in Interactions Browser

Please see the Physical Interaction reports below for full details

protein-protein

Physical Interaction

Assay

References

Yp3 - Adh

experimental knowledge based

(Guruharsha et al., 2011)

Yp3 - Ald1

experimental knowledge based

(Guruharsha et al., 2011)

Yp3 - Argk

experimental knowledge based

(Guruharsha et al., 2011)

Yp3 - CG16826

experimental knowledge based

(Guruharsha et al., 2011)

Yp3 - CG31343

experimental knowledge based

(Guruharsha et al., 2011)

Yp3 - CG32473

experimental knowledge based

(Guruharsha et al., 2011)

Yp3 - CG34205

experimental knowledge based

(Guruharsha et al., 2011)

Yp3 - CG5500

experimental knowledge based

(Guruharsha et al., 2011)

Yp3 - CG5506

experimental knowledge based

(Guruharsha et al., 2011)

Yp3 - Fer1HCH

experimental knowledge based

(Guruharsha et al., 2011)

Yp3 - Fer2LCH

experimental knowledge based

(Guruharsha et al., 2011)

Yp3 - Gpdh1

experimental knowledge based

(Guruharsha et al., 2011)

Yp3 - Lsp2

experimental knowledge based

(Guruharsha et al., 2011)

Yp3 - PPO1

experimental knowledge based

(Guruharsha et al., 2011)

Yp3 - Pglym78

experimental knowledge based

(Guruharsha et al., 2011)

Yp3 - Scp1

experimental knowledge based

(Guruharsha et al., 2011)

Yp3 - Tengl4

experimental knowledge based

(Guruharsha et al., 2011)

Yp3 - Tsf1

experimental knowledge based

(Guruharsha et al., 2011)

Yp3 - Vajk2

experimental knowledge based

(Guruharsha et al., 2011)

Yp3 - Yp1

experimental knowledge based

(Guruharsha et al., 2011)

Yp3 - Yp2

experimental knowledge based

(Guruharsha et al., 2011)

Yp3 - apolpp

experimental knowledge based

(Guruharsha et al., 2011)

Summary of Genetic Interactions

esyN Network Diagram

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

External Data

Linkouts

BioGRID - A database of protein and genetic interactions.

58712

DroID - A comprehensive database of gene and protein interactions.

FBgn0004047

InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.

32339

MIST (protein-protein) - An integrated Molecular Interaction Database

Pathways

Signaling Pathways (FlyBase)

Metabolic Pathways

External Data

Linkouts

Genomic Location and Detailed Mapping Data

Chromosome (arm)

Recombination map

1-46

Cytogenetic map

12C1-12C1

Sequence location

X:13,759,546..13,761,547 [+]

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

12C1-12C1

Limits computationally determined from genome sequence between P{EP}g^EP514 and P{EP}EP1354&P{EP}EP790

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

12B-12C

(determined by in situ hybridisation)

(Vieira et al., 1997, Whiting et al., 1989, Barnett et al., 1980)

12A6-12D3

(determined by in situ hybridisation)

(Riddell et al., 1981)

Experimentally Determined Recombination Data

Location

1-46

(FlyBase, 2016)

1-43.8

(Comeron et al., 2012)

1-44

Left of (cM)

Right of (cM)

Notes

Stocks and Reagents

Stocks (5)

Bloomington

33466

w^* P{EP}Yp3^G1030

67220

y¹ sc^* v¹ sev²¹; P{TRiP.HMC06321}attP40

FlyORF

F003530

M{UAS-Yp3.ORF.3xHA.GW}ZH-86Fb

VDRC

v46785

w¹¹¹⁸; P{GD16776}v46785

v46787

w¹¹¹⁸; P{GD16776}v46787

Genomic Clones (27)

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones (369)

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequenced

BDGP DGC clones

RH08557

Other clones

FI02182

Drosophila Genomics Resource Center cDNA clones

For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

FBgn0004047

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi and Array Information

Linkouts

DRSC - Results frm RNAi screens

FBgn0004047

GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents

32339

Antibody Information

Laboratory Generated Antibodies

Commercially Available Antibodies

Other Information

Relationship to Other Genes

Source for database identify of

Source for database merge of

Additional comments

Other Comments

In a sample of 79 genes with multiple introns, 33 showed significant heterogeneity in G+C content among introns of the same gene and significant positive correspondence between the intron and the third codon position G+C content within genes. These results are consistent with selection adding against preferred codons at the start of genes.

(Kliman and Eyre-Walker, 1998)

20-Hydroxyecdysone, but not juvenile hormone, regulation of yolk protein gene expression can be mapped to cis-acting DNA sequences upstream of, 3' to and within the Yp3 transcription unit. It is not clear whether regulation by 20-hydroxyecdysone is direct or indirect. Methoprene up-regulation is only observed when native yolk protein genes are assayed, suggesting that it may operate through influencing stability of the message.

(Bownes et al., 1996)

Two independent cis-acting elements of 328bp and 419bp within a 747bp promoter region regulate the sex- and tissue-specific expression of Yp3.

(Ronaldson and Bownes, 1995)

Pattern of osmium zinc iodide staining in the cortical cytoplasm varies in relation to the number of yolk protein structural genes.

(Giorgi et al., 1993)

Structural gene for the yolk protein 3 found in recently-emerged female flies.

(Lindsley and Zimm, 1992)

Evolutionary conservation of specificity of yolk protein uptake by the oocyte is studied throughout Diptera.

(Martinez and Bownes, 1992)

Female flies with varying numbers of Yp1, Yp2 and Yp3 genes have been generated. Each yolk protein gene makes an equivalent contribution to the fecundity and fertility of the female, and they do not individually provide unique functions to the embryo. The number of eggs laid by a female depends on the number of genes encoding yolk proteins present in the genome, and the probability of an egg producing an adult depends on the number of yolk protein genes present in the mother.

(Bownes et al., 1991)

In situ hybridisation of recombinant DNA probes to polytene chromosomes of D.melanogaster and D.virilis is performed to study homologies between the chromosomal Muller elements of the two species.

(Whiting et al., 1989)

Origin and Etymology

Discoverer

Postlethwait, July 1979.

Etymology

Identification

External Crossreferences and Linkouts ( 36 )

Sequence Crossreferences

NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

32339

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.

RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.

UniProt/Swiss-Prot - Manually annotated and reviewed records of protein sequence and functional information

P06607

UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information

X2JEX8

Other crossreferences

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0004047

Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones

FBgn0004047

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG11129

Flygut - An atlas of the Drosophila adult midgut

FBgn0004047

GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents

32339

InterPro - A database of protein families, domains and functional sites

KEGG Genes - Molecular building blocks of life in the genomic space.

Dmel_CG11129

modMine - A data warehouse for the modENCODE project

FBgn0004047

Linkouts

BioGRID - A database of protein and genetic interactions.

58712

DroID - A comprehensive database of gene and protein interactions.

FBgn0004047

DRSC - Results frm RNAi screens

FBgn0004047

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

FBgn0004047

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

CG11129-RA

FlyCyc Genes - Genes from a BioCyc PGDB for Dmel

FBGN0004047

FlyMine - An integrated database for Drosophila genomics

FBgn0004047

InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.

32339

MIST (protein-protein) - An integrated Molecular Interaction Database

Synonyms and Secondary IDs (18)

Reported As

Symbol Synonym

CG11129

(Çiçek et al., 2016, McEachern et al., 2014, Sirot et al., 2014, Jaspers et al., 2012, Cammarato et al., 2011, Gruber and Long, 2009, Horne et al., 2009, Perkins et al., 2009, Hughes et al., 2008, Cermelli et al., 2006, Laviolette et al., 2005, Levy et al., 2004)

DIM 30

(Levy et al., 2004)

RH08557p

(Zeng et al., 2015)

VG3

(Persson et al., 1991)

VIT3Dm

(Horne et al., 2009)

(Papassideri et al., 2007, Vanzo et al., 2007, Richard et al., 2005, Hediger et al., 2004, Hutson and Bownes, 2003, Richard et al., 2001, Sanchez and Guerrero, 2001, Trougakos et al., 2001, Carlson and Harshman, 1999, Sappington and Raikhel, 1998, de Loof et al., 1990)

YP-3

(Mintzas and Kambysellis, 1982)

YP3

(Jha et al., 2012, Allen and Spradling, 2008, Kpebe and Rabinow, 2008, Thomson et al., 2008, Flatt et al., 2005, Chatterjee and Mukherjee, 1996, Segalat et al., 1994, Butterworth et al., 1991, Baeuerle et al., 1988, Nothiger and Steinmann-Zwicky, 1987, Ota et al., 1981)

YP₃

(Granadino et al., 1991)

fs(1)1526

(Foe et al., 1993)

fs(1)A1526

(Kubli, 2003, Schutt and Nothiger, 2000)

yp3

(Vimal et al., 2019, Majewska et al., 2014, Yamamoto et al., 2013, Terashima and Bownes, 2004, Fujii and Amrein, 2002, Li and Baker, 1998, Bownes et al., 1996, Bownes, 1994, Giorgi et al., 1993, Bownes et al., 1991, Liddell and Bownes, 1991, Liddell and Bownes, 1991, Garabedian et al., 1987)

Name Synonyms

Yolk protein 3

(Zeng et al., 2015, McEachern et al., 2014, Jaspers et al., 2012, Tarone et al., 2012, Cammarato et al., 2011, McGraw et al., 2008, Goldman and Arbeitman, 2007)

vitellogenin

(Kuhn et al., 2015, Sommer et al., 2005, Persson et al., 1991)

yolk protein

(Richard et al., 2005, Vieira et al., 1997)

yolk protein 3

(Newell et al., 2020, Thomson et al., 2008, Tadros et al., 2007, Cermelli et al., 2006, McIntyre et al., 2006)

Secondary FlyBase IDs

FBgn0000781

Datasets (0)

Study focus (0)

Experimental Role

Project

Project Type

Title

References (197)

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