A Database of Drosophila Genes & Genomes

FB2008_07, released August 8, 2008
 

Gene Dmel\z

General Information
SymbolDmel\zSpeciesD. melanogaster
NamezesteAnnotation symbolCG7803
Feature typeprotein_coding_geneFlyBase IDFBgn0004050
Created / Updated2005-09-09/2005-09-09
Genomic Location
Chromosome (arm)XRecombination map1-1.0
Cytogenetic map3A3-3A3Sequence locationX:2,341,802..2,344,583 [+]
Map ( GBrowse ) detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
The gene zeste is referred to in FlyBase by the symbol z (CG7803, FBgn0004050). It has the cytological map location 3A3. Its sequence location is X:2341802..2344583. Its molecular function is described as: DNA binding; protein binding; hydrogen ion transporting ATPase activity, rotational mechanism; hydrogen ion transporting ATP synthase activity, rotational mechanism. It is involved in the biological processes: ommochrome biosynthetic process; regulation of transcription, DNA-dependent; positive regulation of transcription, DNA-dependent; ATP synthesis coupled proton transport. 83 alleles are reported. The phenotypes of these alleles are annotated with: pigment cell; eye. It has 2 annotated transcripts and 2 annotated polypeptides.

External Summaries
hide Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
Gene/Allele symbols may differ from current usage
z: zeste
The regulatory gene zeste interacts with the white locus as well as with the bithorax and decapentaplegic complexes, changing the phenotypic expression of these loci. z1 was the first mutant allele identified (Gans, 1948, 1953); the homo- or hemizygotes of this neomorphic mutant show a lemon yellow eye color when carrying two paired copies of w+ or of the rightmost w+ alleles [as in z1 w+/z1 w+ females or z1/Y males with a w+ duplication (Jack and Judd, 1979)]. z1 w+/Y males without the duplication, z1/z1 females heterozygous for a w allele belonging to one of the right-hand (zeste-suppressing) subloci, or z+/z1 females are wild type. An intralocus duplication for a right sublocus of white produces mottling in z1 males. z1 eye color develops autonomously in mosaics and in eye-disk transplants. It is not affected by the number of Y chromosomes in the genotype. A third chromosome mutant wo interacts with z1 or z58g to lighten eye color, producing z/z;wo/wo white-eyed females and z/Y;wo/wo males with a slight deviation from wild-type eye color (Rayle, 1969, DIS 44: 98; Kaufman et al., 1973). z1 has no effect on the expression of the white gene in ocelli, testes, or larval Malphigian tubules. The first za mutant was also identified by Gans. These mutants are wild type in za/Y males and za/za, za/Df(1)z, and z+/za females. The heteroallelic combination of z1/za, however, results in yellow-eyed flies. Complementation between wsp and other white alleles does not occur in za mutants, although it does occur in z+ or z1 flies (Babu and Bhat, 1980). za-type alleles, including zae(bx), as well as the partial revertant of z1, z11G3, enhance the mutant phenotype of certain heteroallelic combinations of BXC alleles that show transvection (partial complementation) when paired; z+ and z1, however, do not affect these BXC alleles (Kaufman et al., 1973; Gelbart and Wu, 1982; Mariani et al., 1985; Pirrotta et al., 1987). All zeste mutant alleles tested enhance certain heteroallelic mutant combinations that show transvection in dpp (Gelbart and Wu, 1982). The zop mutants (Lifschytz and Green, 1984), unlike z1, require only one copy of w+ for expression of a zeste eye color in homo- and hemizygotes. Heterozygotes over z+ are zeste if they have two copies of w+, but are wild type if there is only one copy. Another mutant, zv77h, requires only one copy of w+ in males. The eyes are brown variegated in hemi- and homozygous zv77h females and zv77h/Y males, but wild type in homozygous zv77h Dp(1;1)w+2 females and zv77h Dp(1;1)w+2/Y males, this allele responding to an increase in w+ dosage in a manner contrary to that of z1 (Green, 1984). Diepoxy-butane-induced mutations (including multilocus deletions) have been generated in an attempt to obtain a null allele of zeste (Goldberg et al., 1989). Some of the females that were completely deficient for z [Df(1)z-deb3/Df(1)z-deb3, for example] survived and were fertile, indicating that the product of the zeste gene is not required for viability or female fertility.
z1
Two synapsed copies of w+ required for expression of zeste eye color (Gans, 1953). Ocelli wild type in color, as are testes and larval Malpighian tubules. Supports transvection at Ubx but not at dpp.
z11G3
Partial revertant of z1 showing wild-type eye color in hemizygous males and homozygous females (Gans, 1953). Almost complete complementation of z1 eye color. Does not support transvection at dpp or Ubx.
za
Hemizygous males and homozygous females said to be wild type in eye color (Gans); however, on closer inspection they are seen to have a diluted eye color that becomes brown with age (Pirrotta et al., 1987). z1/za females have zeste eyes; za wDZL/za wch females have light brown eyes. Does not support transvection at dpp or Ubx.
zae(bx)
Mostly wild type, but slight eye color variegation in homozygous females (Lewis, 1959, DIS 33: 96). z1/zae(bx) females zeste. Does not support transvection at dpp or Ubx.
zop6
Eye color zeste in hemizygous males and homozygous females with only one copy of w+; homozygous females with two copies of w+ also zeste. Heterozygous z+/zop6 females wild type if one copy of w+, but zeste if two copies; zop6 reverts to weaker alleles after EMS or X rays (Lifschytz and Green, 1984).
zπ1
Hemizygous males and homo- or hemizygous females almost wild type in eye color. Supports transvection at Ubx (Pirrotta et al., 1987).
zv77h
Eye color diluted, turning brownish with age in hemizygous males and hemi- and homozygous females with a normal complement of w+ genes. za/zv77h females are wild type; z1/zv77h females are zeste; zv77h hemizygous males and homozygous females carrying a w+ duplication in each X are wild type.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
3A3-3A3  
Limits computationally determined from genome sequence between P{EP}EP1605 and P{EP}CG32796EP1385&P{EP}EP1160  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
3A4-3A4
(determined by in situ hybridisation)  
3A-3A
(determined by in situ hybridisation)  
3A3-3A4
(determined by in situ hybridisation)  
3A3-3A4
(determined by in situ hybridisation)  
3A1-3A4
(determined by in situ hybridisation)  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Molecular Map Data
Gene Order (in direction of increasing cytology)
References
In direction of increasing cytology: tko- z+
In direction of increasing cytology: tko- CG32796- z+
Gene Order (overall orientation not stated)
References
hide Gene Model & Products
Please see the GBrowse view of Dmel\z for information on other features
detailed view FBtr0070435 FBtr0070458 FBtr0100380 FBtr0114528 FBtr0070457 FBpp0070442 FBpp0099792 FBpp0070419 FBpp0113020 FBpp0070441 FBti0014834
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0070435
  2599
  575
FBtr0100380
  2398
  575
Additional Transcript Data & Comments
Reported size (kB)
2.2 (northern blot)
2.4 (northern blot, longest cDNA)
2.5 (northern blot)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kD)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
z-PA  
FBpp0070419  
62.0  
575  
6.70  
z-PB  
FBpp0099792  
62.0  
575  
6.70  
Additional Polypeptide Data & Comments
Reported size (kD)
555 (aa); 61 (kD predicted)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
TRANSFAC - Eukaryotic transcription factors, their genomic binding sites, and DNA-binding profiles
  • R04956
  • R04958
  • T00918
  • T02100
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
Maps to
Does NOT map to
Identified with
hide Mapped Features & Mutations
Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here
Type
Symbol & Location
Additional Notes
References
aberration junction
In(1)z[ae(bx)].bk1
X:2,343,442..2,343,444
comment=In(1)z[ae(bx)] breakpoint was localized to an 11bp region within the z gene centered around amino acids 309-311 (FBrf0046137). The amino acid change associated with the inversion begins at amino acid 311 (FBrf0051643), narrowing down the probable breakpoint location further.
evidence=experimental
aberration junction
comment=Df(1)64c4 breakpoint localized to coordinate +2500 +/- 10bp relative to BamHI site upstream of the z gene.
evidence=experimental
deletion
comment=Site of the 299bp deletion associated with z[pi]. z[pi] is associated with a 0.7kb P element insertion and a deletion of 299bp.
evidence=experimental
deletion
comment=Approximate location of a small deletion of 314 nucleotides that takes out the AUG initiation codon and a large portion of the 5' UTR. The exact boundaries were not reported.
evidence=experimental
deletion
comment=Tyrosine 510 is deleted in z[11G3]. Induced on z[1] chromosome so also carries the K425M amino acid change.
evidence=experimental
point mutation
evidence=experimental
na_change=C2343710T
pr_change=H400Y|z-PA,H400Y|z-PB
reported_na_change=C2283T
reported_pr_change=H400Y
point mutation
comment=z[1] carries several polymorphisms in addition to the K425M substitution.
evidence=experimental
na_change=A2343786T
pr_change=K425M|z-PA,K425M|z-PB
reported_pr_change=K425M
point mutation
evidence=experimental
na_change=C2343809T
pr_change=P433S|z-PA,P433S|z-PB
reported_na_change=C?T
reported_pr_change=P433S
point mutation
evidence=experimental
na_change=C2343834T
pr_change=P441L|z-PA,P441L|z-PB
reported_na_change=C2407T
reported_pr_change=P441
point mutation
comment=Induced on z[1] chromosome so also carries a K425M amino acid change. Site of nucleotide substitution in mutant inferred by FlyBase based on reported amino acid change.
evidence=experimental
na_change=C2343861T
pr_change=P450L|z-PA,P450L|z-PB
reported_pr_change=P450L
protein binding site
z-protein_bind-1
X:2,342,060..2,342,065
bound_moiety=z-XP
evidence=experimental
protein binding site
z-protein_bind-2
X:2,342,024..2,342,029
bound_moiety=z-XP
evidence=experimental
rescue fragment
comment=Rescues the aberrant dull reddish-brown eye color of z mutant females to wild type. Position of restriction fragment on reference sequence inferred by FlyBase curator.
evidence=experimental
linked_to=EcoRI-EcoRI_rfrag
hide External Data
Linkouts
DEDB - Drosophila exon database: splicing graphs
Crossreferences
EPD - Eukarytoic Promoter Database, an annotated collection of POL II promoters
hide Expression Data
FlyBase-Curated Data
Transcript and
Protein data
Please see the FlyBase Gene Expression Report for details of gene expression from the literature.
hide Summary of Transcript Expression
Stage
Tissue/Position
Reference
 larval stage | third instar stage 2-P | early
 ring gland
 embryonic stage | >=extended germ band
 larval stage | third instar | early
 embryonic/larval digestive system | restricted
 adult stage
 adult stage | pharate
 adult muscle system | restricted
 larval stage | third instar | early
 larval central nervous system
 larval stage | third instar stage 2-P | early
 embryonic/larval salivary gland
 adult stage | pharate
 embryonic stage-adult stage
 pupal stage
 adult abdomen
 larval stage | third instar stage 2-P
 imaginal disc
 larval stage | third instar | early
 larval stage | third instar stage 2-P | early
 Malpighian tubule
 adult stage
 adult brain
Marker for
    Subcellular Localization
    CV Term
    hide Summary of Polypeptide Expression
    Stage
    Tissue/Position
    Reference
    Marker for
      Subcellular Localization
      CV Term
      polytene chromosome
      hide External Data & Images
      Linkouts
      FLIGHT - Cell culture data for RNAi and other high-throughput technologies
      FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
      GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies
      FlyExpress - Embryonic expression images (BDGP data)
      hide Alleles & Phenotypes
      hide Summary of Allele Phenotypes
      Lethality
      Allele
      Other Phenotypes
      Allele
      Phenotype manifest in
      Allele
      hide Classical Alleles ( 42 )
      For All Classical Alleles Show

      Allele of zClassMutagenStocksKnown lesion
      z+64b130 --
      z+64b90 --
      z1-350 Yes
      z1-420 Yes
      z11G3amorph0 Yes
      z1neomorph, gain of function80 Yes
      z310 Yes
      z320 --
      z58g2 --
      z59d1 --
      z78c0 Yes
      z81E0 --
      z88h7(6)
        1 --
        zFN201
          0 --
          zJ910 --
          zK10 --
          zK20 --
          zKLI2
            0 --
            zLI10 --
            zNJ10 --
            zNJ20 --
            zRN10 --
            zRN40 --
            za68k0 --
            za6910 --
            za6920 Yes
            za6931 --
            za6941 Yes
            zaamorph, loss of function, hypomorph8 Yes
            zae(bx)21 --
            zae(bx)amorph, loss of function, hypomorph1 Yes
            ze
              0 --
              zop111 Yes
              zop6neomorph, hypermorph1 Yes
              zop6R1
                0 --
                zop
                  0 --
                  zp69a0 --
                  zunspecified
                    0 --
                    zv77hamorph3 Yes
                    zπ1loss of function0 Yes
                    zπ20 Yes
                    zπr0 Yes
                    hide Alleles Carried on Transgenic Constructs ( 41 )
                    For All Alleles Carried on Transgenic Constructs Show

                    Allele of zClassMutagenStocksKnown lesion
                    z+op60 Yes
                    z+t5.80 Yes
                    z1.tBa0 Yes
                    z11G3.tBa0 Yes
                    z5'MT.Act5C0 Yes
                    zAVA0 Yes
                    zBan0 Yes
                    zCBst0 Yes
                    zCZ0 Yes
                    zCZΔRsa0 Yes
                    zGD45052 Yes
                    zH548L0 Yes
                    zK425E0 Yes
                    zK425G0 Yes
                    zK425L0 Yes
                    zK425Q0 Yes
                    zK425V0 Yes
                    zK564L