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Gene Dmel\Z600

General Information
Symbol	Dmel\Z600	Species	D. melanogaster
Name	Z600	Annotation symbol	CG17962
Feature type	protein_coding_gene	FlyBase ID	FBgn0004052
Gene Model Status	Current	Stock availability	4 publicly available
Also Known As	frs, DMZ60MEX
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	71D3-71D3	Sequence location	3L:15,502,161..15,502,613 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Z600 is referred to in FlyBase by the symbol Dmel\Z600 (CG17962, FBgn0004052). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: cyclin binding; protein binding. There is experimental evidence that it is involved in the biological process: ventral furrow formation; negative regulation of mitosis; negative regulation of G2/M transition of mitotic cell cycle. 12 alleles are reported. The phenotypes of these alleles are annotated with: spermatogonial cyst; wing disc; wing; egg chamber; wing hair. It has one annotated transcript and one annotated polypeptide. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of extremely low expression. Peak expression observed within 00-06 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: No expression detected in any larval or adult organs/tissues. Comments on Affy2 ProbeSet: ProbeSet 1638943_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of Z600. Gene sequence location is 3L:15502161..15502613.
User Contributed Data
	Beta version, feedback welcome
Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
Gene/Allele symbols may differ from current usage	Z600 Member of cluster of genes that includes Eip28/29 and Gdl. Believed to play role in processes of early development.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 71D3-71D3   Limits computationally determined from genome sequence between P{lacW}cp309s2172&P{lacW}l(3)j2A2j2A2 and P{EP}Tfb2EP572
Experimentally Determined Cytological Location
Cytogenetic map Notes References 71C-71C     (Gibson et al., 1999)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\Z600 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.44 Gene model reviewed during 5.46
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Z600-RA FBtr0075549  NM_079359   453   90
Additional Transcript Data & Comments
Reported size (kB)	0.6 (northern blot) (Schulz and Miksch, 1989, Schulz and Butler, 1989)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Z600-PA   FBpp0075304   10.5   90   10.59     NP_524083   AAF49634
Additional Polypeptide Data & Comments
Reported size (kDa)	18 (kD observed); 10.5 (kD predicted) (Galewsky et al., 1990)
Comments
External Data
Linkouts
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014296 AAF49634   AI945118   AI946833   BE662076   BE976826   BE976948   BE978101   BT023336   BT023358   BT029402   CO268243   CO303101   CO303604   EC061524   EC063556   EC208487   EC214393   EC214394   GH942067   GH953638   GH954930   GH967350   GH981086   GH984394   X58286 CAA41222
UniProtKB/Swiss-Prot	P22469
UniProtKB/TrEMBL
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References regulatory region FBsf0000435475 3L:15,501,894..15,502,200 evidence=Reporter construct (in vivo) (Schulz and Miksch, 1989, Halfon, 2012.6.19)
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 4 -- 6   organism | subset   (Fisher et al., 2012) embryonic stage 7 -- 8   amnioserosa anlage   (Fisher et al., 2012) dorsal ectoderm   (Fisher et al., 2012) embryonic stage 9 -- 10   amnioserosa primordium   (Fisher et al., 2012) northern blot Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 9     (Schulz and Miksch, 1989) Comment:reference states 0-4 hr AEL embryonic stage 4   organism | dorsal   (Schulz and Miksch, 1989) Comment:late embryonic stage 4 organism | posterior   (Schulz and Miksch, 1989) Comment:late embryonic stage 4 embryonic cycle 13 -- embryonic cycle 16     (Schulz and Miksch, 1989) embryonic stage 5 -- 12   organism | dorsal   (Schulz and Miksch, 1989)
Additional Descriptive Data
	Z600 transcripts are detected starting at embryonic cycle 13. Transcripts initially accumulate uniformly, but become concentrated in the dorsal and posterior regions during cellularization, and persist in the dorsal regions of the embryo during gastrulation and germ band extension. No signal is detected after germ band extension. (Schulz and Miksch, 1989)
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
western blot Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 9     (Galewsky et al., 1990) Comment:reference states 0-4 hr AEL embryonic cycle 11 -- embryonic cycle 13     (Galewsky et al., 1990)
Additional Descriptive Data
	The 18 kD Z600 protein is detected at low levels in 0-2 hr embryos and at higher levels in 2-4 hr embryos. No expression is detected in older embryos or in unfertilized eggs. Immunolocalization experiments reveal that expression is found only in nuclear cycle 11-13 embryos, associated with condensed chromatin. Protein is not detected at later stages, despite the presence of Z600 transcript. (Galewsky et al., 1990)
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
cytoplasm inferred from direct assay (Grosshans et al., 2003)
Expression Deduced from Reporters
Reporter: P{z600-lacZ} Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 11     (Schulz and Miksch, 1989) Comment:reference states 0-6 hr AEL embryonic stage 4   organism | dorsal   (Schulz and Miksch, 1989) Comment:late embryonic stage 4 organism | posterior   (Schulz and Miksch, 1989) Comment:late embryonic stage 4 organism | ventral   (Schulz and Miksch, 1989) Comment:late embryonic stage 4 embryonic cycle 13 -- embryonic cycle 16     (Schulz and Miksch, 1989) embryonic stage 5 -- 12   organism | dorsal   (Schulz and Miksch, 1989) organism | ventral   (Schulz and Miksch, 1989)
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: No expression detected in any larval or adult organs/tissues. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    2.3 Larval Midgut    1.7 Larval Hindgut    1.3 Larval Malpighian Tubules    2.8 Larval Fat Body    5 Larval Salivary Gland    1.3 Larval Trachea    2.025 Larval Carcass    2.875 Adult Head    3.4 Adult Eye    0.8 Adult Brain    3.1 Adult Thoracic-Abdominal Ganglion    0.9 Adult Crop    3.9 Adult Midgut    1.9 Adult Hindgut    2.3 Adult Malpighian Tubules    1.4 Adult Fat Body    3.6 Adult Salivary Gland    4.6 Adult Heart    0.6 Adult VirginFemale Spermatheca    1.7 Adult InseminatedFemale Spermatheca    3.2 Adult Ovary    2 Adult Testis    17.2 Adult Male Accessory Gland    3.1 Adult Carcass    3.3 Expression Level Scale  None   Low  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    2.3 Larval Midgut    1.7 Larval Hindgut    1.3 Larval Malpighian Tubules    2.8 Larval Fat Body    5 Larval Salivary Gland    1.3 Larval Trachea    2.025 Larval Carcass    2.875 Adult Head    3.4 Adult Eye    0.8 Adult Brain    3.1 Adult Thoracic-Abdominal Ganglion    0.9 Adult Crop    3.9 Adult Midgut    1.9 Adult Hindgut    2.3 Adult Malpighian Tubules    1.4 Adult Fat Body    3.6 Adult Salivary Gland    4.6 Adult Heart    0.6 Adult VirginFemale Spermatheca    1.7 Adult InseminatedFemale Spermatheca    3.2 Adult Ovary    2 Adult Testis    17.2 Adult Male Accessory Gland    3.1 Adult Carcass    3.3 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    2.3 Larval Midgut    1.7 Larval Hindgut    1.3 Larval Malpighian Tubules    2.8 Larval Fat Body    5 Larval Salivary Gland    1.3 Larval Trachea    2.025 Larval Carcass    2.875 Adult Head    3.4 Adult Eye    0.8 Adult Brain    3.1 Adult Thoracic-Abdominal Ganglion    0.9 Adult Crop    3.9 Adult Midgut    1.9 Adult Hindgut    2.3 Adult Malpighian Tubules    1.4 Adult Fat Body    3.6 Adult Salivary Gland    4.6 Adult Heart    0.6 Adult VirginFemale Spermatheca    1.7 Adult InseminatedFemale Spermatheca    3.2 Adult Ovary    2 Adult Testis    17.2 Adult Male Accessory Gland    3.1 Adult Carcass    3.3 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    2.3 Larval Midgut    1.7 Larval Hindgut    1.3 Larval Malpighian Tubules    2.8 Larval Fat Body    5 Larval Salivary Gland    1.3 Larval Trachea    2.025 Larval Carcass    2.875 Adult Head    3.4 Adult Eye    0.8 Adult Brain    3.1 Adult Thoracic-Abdominal Ganglion    0.9 Adult Crop    3.9 Adult Midgut    1.9 Adult Hindgut    2.3 Adult Malpighian Tubules    1.4 Adult Fat Body    3.6 Adult Salivary Gland    4.6 Adult Heart    0.6 Adult VirginFemale Spermatheca    1.7 Adult InseminatedFemale Spermatheca    3.2 Adult Ovary    2 Adult Testis    17.2 Adult Male Accessory Gland    3.1 Adult Carcass    3.3 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    2.3 Larval Midgut    1.7 Larval Hindgut    1.3 Larval Malpighian Tubules    2.8 Larval Fat Body    5 Larval Salivary Gland    1.3 Larval Trachea    2.025 Larval Carcass    2.875 Adult Head    3.4 Adult Eye    0.8 Adult Brain    3.1 Adult Thoracic-Abdominal Ganglion    0.9 Adult Crop    3.9 Adult Midgut    1.9 Adult Hindgut    2.3 Adult Malpighian Tubules    1.4 Adult Fat Body    3.6 Adult Salivary Gland    4.6 Adult Heart    0.6 Adult VirginFemale Spermatheca    1.7 Adult InseminatedFemale Spermatheca    3.2 Adult Ovary    2 Adult Testis    17.2 Adult Male Accessory Gland    3.1 Adult Carcass    3.3 Expression Level Scale  None   Low  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    2.3 Larval Midgut    1.7 Larval Hindgut    1.3 Larval Malpighian Tubules    2.8 Larval Fat Body    5 Larval Salivary Gland    1.3 Larval Trachea    2.025 Larval Carcass    2.875 Adult Head    3.4 Adult Eye    0.8 Adult Brain    3.1 Adult Thoracic-Abdominal Ganglion    0.9 Adult Crop    3.9 Adult Midgut    1.9 Adult Hindgut    2.3 Adult Malpighian Tubules    1.4 Adult Fat Body    3.6 Adult Salivary Gland    4.6 Adult Heart    0.6 Adult VirginFemale Spermatheca    1.7 Adult InseminatedFemale Spermatheca    3.2 Adult Ovary    2 Adult Testis    17.2 Adult Male Accessory Gland    3.1 Adult Carcass    3.3 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    2.3 Larval Midgut    1.7 Larval Hindgut    1.3 Larval Malpighian Tubules    2.8 Larval Fat Body    5 Larval Salivary Gland    1.3 Larval Trachea    2.025 Larval Carcass    2.875 Adult Head    3.4 Adult Eye    0.8 Adult Brain    3.1 Adult Thoracic-Abdominal Ganglion    0.9 Adult Crop    3.9 Adult Midgut    1.9 Adult Hindgut    2.3 Adult Malpighian Tubules    1.4 Adult Fat Body    3.6 Adult Salivary Gland    4.6 Adult Heart    0.6 Adult VirginFemale Spermatheca    1.7 Adult InseminatedFemale Spermatheca    3.2 Adult Ovary    2 Adult Testis    17.2 Adult Male Accessory Gland    3.1 Adult Carcass    3.3 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    2.3 Larval Midgut    1.7 Larval Hindgut    1.3 Larval Malpighian Tubules    2.8 Larval Fat Body    5 Larval Salivary Gland    1.3 Larval Trachea    2.025 Larval Carcass    2.875 Adult Head    3.4 Adult Eye    0.8 Adult Brain    3.1 Adult Thoracic-Abdominal Ganglion    0.9 Adult Crop    3.9 Adult Midgut    1.9 Adult Hindgut    2.3 Adult Malpighian Tubules    1.4 Adult Fat Body    3.6 Adult Salivary Gland    4.6 Adult Heart    0.6 Adult VirginFemale Spermatheca    1.7 Adult InseminatedFemale Spermatheca    3.2 Adult Ovary    2 Adult Testis    17.2 Adult Male Accessory Gland    3.1 Adult Carcass    3.3 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    3.4   NA  Eye    0.8   NA  Brain    3.1   2.3  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    0.9   NA  Crop    3.9   1.7  Midgut    1.9   1.3  Hindgut    2.3   2.8  Malpighian Tubules    1.4   5  Fat Body    3.6   1.3  Salivary Gland    4.6   NA  Heart    0.6   2.025  Trachea    NA   NA  VirginFemale Spermatheca    1.7   NA  InseminatedFemale Spermatheca    3.2   NA  Ovary    2   NA  Testis    no informative data   NA  Male Accessory Gland    3.1   2.875  Carcass    3.3 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    0 fat body, pupae P8    0 carcass, larvae L3 wandering    1 carcass, 1-day adult    0 carcass, 4-day adult    1 carcass, 20-day adult    0 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    2 accessory gland, mated 4-day male    0 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    0 fat body, pupae P8    0 carcass, larvae L3 wandering    1 carcass, 1-day adult    0 carcass, 4-day adult    1 carcass, 20-day adult    0 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    2 accessory gland, mated 4-day male    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    0 fat body, pupae P8    0 carcass, larvae L3 wandering    1 carcass, 1-day adult    0 carcass, 4-day adult    1 carcass, 20-day adult    0 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    2 accessory gland, mated 4-day male    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    0 fat body, pupae P8    0 carcass, larvae L3 wandering    1 carcass, 1-day adult    0 carcass, 4-day adult    1 carcass, 20-day adult    0 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    2 accessory gland, mated 4-day male    0 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    0 fat body, pupae P8    0 carcass, larvae L3 wandering    1 carcass, 1-day adult    0 carcass, 4-day adult    1 carcass, 20-day adult    0 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    2 accessory gland, mated 4-day male    0 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    0 fat body, pupae P8    0 carcass, larvae L3 wandering    1 carcass, 1-day adult    0 carcass, 4-day adult    1 carcass, 20-day adult    0 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    2 accessory gland, mated 4-day male    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    0 fat body, pupae P8    0 carcass, larvae L3 wandering    1 carcass, 1-day adult    0 carcass, 4-day adult    1 carcass, 20-day adult    0 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    2 accessory gland, mated 4-day male    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    0 fat body, pupae P8    0 carcass, larvae L3 wandering    1 carcass, 1-day adult    0 carcass, 4-day adult    1 carcass, 20-day adult    0 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    2 accessory gland, mated 4-day male    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of extremely low expression. Peak expression observed within 00-06 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    29 embryo 02-04hr    542 embryo 04-06hr    17 embryo 06-08hr    1 embryo 08-10hr    2 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    1 embryo 20-22hr    0 embryo 22-24hr    5 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    1 white prepupae 12hr    1 white prepupae 24hr    1 pupae 2d postWPP    1 pupae 3d postWPP    0 pupae 4d postWPP    0 adult male 01day    1 adult male 05day    1 adult male 30day    0 adult female 01day    0 adult female 05day    1 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (29) embryo 02-04hr  (542) embryo 04-06hr    17 embryo 06-08hr    1 embryo 08-10hr    2 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    1 embryo 20-22hr    0 embryo 22-24hr    5 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    1 white prepupae 12hr    1 white prepupae 24hr    1 pupae 2d postWPP    1 pupae 3d postWPP    0 pupae 4d postWPP    0 adult male 01day    1 adult male 05day    1 adult male 30day    0 adult female 01day    0 adult female 05day    1 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    29 embryo 02-04hr  (542) embryo 04-06hr    17 embryo 06-08hr    1 embryo 08-10hr    2 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    1 embryo 20-22hr    0 embryo 22-24hr    5 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    1 white prepupae 12hr    1 white prepupae 24hr    1 pupae 2d postWPP    1 pupae 3d postWPP    0 pupae 4d postWPP    0 adult male 01day    1 adult male 05day    1 adult male 30day    0 adult female 01day    0 adult female 05day    1 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    29 embryo 02-04hr    542 embryo 04-06hr    17 embryo 06-08hr    1 embryo 08-10hr    2 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    1 embryo 20-22hr    0 embryo 22-24hr    5 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    1 white prepupae 12hr    1 white prepupae 24hr    1 pupae 2d postWPP    1 pupae 3d postWPP    0 pupae 4d postWPP    0 adult male 01day    1 adult male 05day    1 adult male 30day    0 adult female 01day    0 adult female 05day    1 adult female 30day    0 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    29 embryo 02-04hr    542 embryo 04-06hr    17 embryo 06-08hr    1 embryo 08-10hr    2 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    1 embryo 20-22hr    0 embryo 22-24hr    5 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    1 white prepupae 12hr    1 white prepupae 24hr    1 pupae 2d postWPP    1 pupae 3d postWPP    0 pupae 4d postWPP    0 adult male 01day    1 adult male 05day    1 adult male 30day    0 adult female 01day    0 adult female 05day    1 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  29 embryo 02-04hr  (542) embryo 04-06hr    17 embryo 06-08hr    1 embryo 08-10hr    2 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    1 embryo 20-22hr    0 embryo 22-24hr    5 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    1 white prepupae 12hr    1 white prepupae 24hr    1 pupae 2d postWPP    1 pupae 3d postWPP    0 pupae 4d postWPP    0 adult male 01day    1 adult male 05day    1 adult male 30day    0 adult female 01day    0 adult female 05day    1 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    29 embryo 02-04hr  (542) embryo 04-06hr    17 embryo 06-08hr    1 embryo 08-10hr    2 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    1 embryo 20-22hr    0 embryo 22-24hr    5 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    1 white prepupae 12hr    1 white prepupae 24hr    1 pupae 2d postWPP    1 pupae 3d postWPP    0 pupae 4d postWPP    0 adult male 01day    1 adult male 05day    1 adult male 30day    0 adult female 01day    0 adult female 05day    1 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    29 embryo 02-04hr    542 embryo 04-06hr    17 embryo 06-08hr    1 embryo 08-10hr    2 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    1 embryo 20-22hr    0 embryo 22-24hr    5 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    1 white prepupae 12hr    1 white prepupae 24hr    1 pupae 2d postWPP    1 pupae 3d postWPP    0 pupae 4d postWPP    0 adult male 01day    1 adult male 05day    1 adult male 30day    0 adult female 01day    0 adult female 05day    1 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    6 embryonic S1    0 embryonic S3    0 leg disc CME L1    1 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    2 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    1 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    6 embryonic S1    0 embryonic S3    0 leg disc CME L1    1 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    2 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    1 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    6 embryonic S1    0 embryonic S3    0 leg disc CME L1    1 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    2 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    1 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    6 embryonic S1    0 embryonic S3    0 leg disc CME L1    1 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    2 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    1 ovary OSC    0 ovary OSS    0 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    6 embryonic S1    0 embryonic S3    0 leg disc CME L1    1 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    2 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    1 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    6 embryonic S1    0 embryonic S3    0 leg disc CME L1    1 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    2 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    1 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    6 embryonic S1    0 embryonic S3    0 leg disc CME L1    1 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    2 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    1 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    6 embryonic S1    0 embryonic S3    0 leg disc CME L1    1 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    2 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    1 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    1 cold shock, 4-day adult    0 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    0 Cadmium 50 mM 48 hrs, 4-day adult    1 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    1 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    0 Ethanol 10% 3 hrs, larvae L3    0 Caffeine 1.5 mg/ml 4 hrs, larvae L3    0 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    0 Caffeine 25 mg/ml 48 hrs, 4-day adult    0 Paraquat 5 mM 48 hrs, 4-day adult    0 Paraquat 10 mM 48 hrs, 4-day adult    1 Rotenone 2 μg 12 hrs, larvae L3    0 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    1 cold shock, 4-day adult    0 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    0 Cadmium 50 mM 48 hrs, 4-day adult    1 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    1 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    0 Ethanol 10% 3 hrs, larvae L3    0 Caffeine 1.5 mg/ml 4 hrs, larvae L3    0 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    0 Caffeine 25 mg/ml 48 hrs, 4-day adult    0 Paraquat 5 mM 48 hrs, 4-day adult    0 Paraquat 10 mM 48 hrs, 4-day adult    1 Rotenone 2 μg 12 hrs, larvae L3    0 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    1 cold shock, 4-day adult    0 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    0 Cadmium 50 mM 48 hrs, 4-day adult    1 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    1 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    0 Ethanol 10% 3 hrs, larvae L3    0 Caffeine 1.5 mg/ml 4 hrs, larvae L3    0 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    0 Caffeine 25 mg/ml 48 hrs, 4-day adult    0 Paraquat 5 mM 48 hrs, 4-day adult    0 Paraquat 10 mM 48 hrs, 4-day adult    1 Rotenone 2 μg 12 hrs, larvae L3    0 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    1 cold shock, 4-day adult    0 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    0 Cadmium 50 mM 48 hrs, 4-day adult    1 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    1 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    0 Ethanol 10% 3 hrs, larvae L3    0 Caffeine 1.5 mg/ml 4 hrs, larvae L3    0 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    0 Caffeine 25 mg/ml 48 hrs, 4-day adult    0 Paraquat 5 mM 48 hrs, 4-day adult    0 Paraquat 10 mM 48 hrs, 4-day adult    1 Rotenone 2 μg 12 hrs, larvae L3    0 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    1 cold shock, 4-day adult    0 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    0 Cadmium 50 mM 48 hrs, 4-day adult    1 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    1 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    0 Ethanol 10% 3 hrs, larvae L3    0 Caffeine 1.5 mg/ml 4 hrs, larvae L3    0 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    0 Caffeine 25 mg/ml 48 hrs, 4-day adult    0 Paraquat 5 mM 48 hrs, 4-day adult    0 Paraquat 10 mM 48 hrs, 4-day adult    1 Rotenone 2 μg 12 hrs, larvae L3    0 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    1 cold shock, 4-day adult    0 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    0 Cadmium 50 mM 48 hrs, 4-day adult    1 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    1 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    0 Ethanol 10% 3 hrs, larvae L3    0 Caffeine 1.5 mg/ml 4 hrs, larvae L3    0 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    0 Caffeine 25 mg/ml 48 hrs, 4-day adult    0 Paraquat 5 mM 48 hrs, 4-day adult    0 Paraquat 10 mM 48 hrs, 4-day adult    1 Rotenone 2 μg 12 hrs, larvae L3    0 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    1 cold shock, 4-day adult    0 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    0 Cadmium 50 mM 48 hrs, 4-day adult    1 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    1 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    0 Ethanol 10% 3 hrs, larvae L3    0 Caffeine 1.5 mg/ml 4 hrs, larvae L3    0 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    0 Caffeine 25 mg/ml 48 hrs, 4-day adult    0 Paraquat 5 mM 48 hrs, 4-day adult    0 Paraquat 10 mM 48 hrs, 4-day adult    1 Rotenone 2 μg 12 hrs, larvae L3    0 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    1 cold shock, 4-day adult    0 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    0 Cadmium 50 mM 48 hrs, 4-day adult    1 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    1 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    0 Ethanol 10% 3 hrs, larvae L3    0 Caffeine 1.5 mg/ml 4 hrs, larvae L3    0 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    0 Caffeine 25 mg/ml 48 hrs, 4-day adult    0 Paraquat 5 mM 48 hrs, 4-day adult    0 Paraquat 10 mM 48 hrs, 4-day adult    1 Rotenone 2 μg 12 hrs, larvae L3    0 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (Graveley et al., 2011) mE1_20_mRNA_expression_cluster_07
External Data & Images
Linkouts	BDGP expression data • IP02169 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0004052 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG17962-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 Z600GD13652 Other Phenotypes Allele decreased cell number, with Scer\GAL4bam.T:Hsim\VP16 Z600Scer\UAS.cGa decreased cell number | embryonic stage, with Scer\GAL4prd.RG1 Z600Scer\UAS.cGa increased cell size, with Scer\GAL4Bx-MS1096 Z600Scer\UAS.cGa mitotic cell cycle defective Z600dsRNA.cGa mitotic cell cycle defective | embryonic cycle 16, with Scer\GAL4prd.RG1 Z600Scer\UAS.cGa visible, with Scer\GAL4Bx-MS1096 Z600Scer\UAS.cGa visible, with Scer\GAL4ptc-559.1 Z600Scer\UAS.cGa Phenotype manifest in Allele egg chamber, with Scer\GAL4bam.T:Hsim\VP16 Z600Scer\UAS.cGa organism | embryonic cycle 16, with Scer\GAL4prd.RG1 Z600Scer\UAS.cGa spermatogonial cyst, with Scer\GAL4bam.T:Hsim\VP16 Z600Scer\UAS.cGa wing, with Scer\GAL4Bx-MS1096 Z600Scer\UAS.cGa wing disc, with Scer\GAL4Bx-MS1096 Z600Scer\UAS.cGa wing hair, with Scer\GAL4ptc-559.1 Z600Scer\UAS.cGa
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of Z600 Class Mutagen Stocks Known lesion Z600EY13120 1 --
Alleles Carried on Transgenic Constructs ( 11 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Z600 Class Mutagen Stocks Known lesion Z600GD13652 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Z600HMS00747 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Z600KK113033 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Z600+t1.7 in vitro construct - genomic fragment 0 Yes Z600+tGa in vitro construct 0 Yes Z60011AxxA in vitro construct - amino acid replacement 0 Yes Z60022A48A in vitro construct 0 Yes Z60086ASA in vitro construct - amino acid replacement 0 Yes Z600dsRNA.cGa in vitro construct - RNAi 0 Yes Z600hs.PG in vitro construct - regulatory fusion 0 Yes Z600Scer\UAS.cGa in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(3L)BK10 (Grosshans and Wieschaus, 2000, Grosshans et al., 2003) Df(3L)rR4-4 (Grosshans et al., 2003) Df(3L)XG1 (Grosshans et al., 2003) Df(3L)XG5 (Grosshans et al., 2003) Df(3L)XG7 (Grosshans et al., 2003) Df(3L)XG8 (Grosshans et al., 2003) Df(3L)XG10 (Grosshans and Wieschaus, 2000, Grosshans et al., 2003)
Not disrupted in	Df(3L)fz-M21 (Grosshans et al., 2003) Df(3L)XG9 (Grosshans et al., 2003)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD13652} NA P{KK113033} NA P{TRiP.HMS00747} NA P{UAS-Z600.G} NA reporter construct P{z600-lacZ} No characterization construct P{Z600+t1.7} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EPgy2}Z600EY13120 NA
Gene Ontology: Function, Process & Cellular Component ( 7 unique terms )
Terms Based on Experimental Evidence ( 6 terms )
Molecular Function
CV term Evidence References
cyclin binding inferred from physical interaction with CycA (Gawlinski et al., 2007) inferred from physical interaction with CycE (Gawlinski et al., 2007) protein binding inferred from physical interaction with Nup50 (Gawlinski et al., 2007)
Biological Process
CV term Evidence References
negative regulation of G2/M transition of mitotic cell cycle inferred from mutant phenotype (Gawlinski et al., 2007) negative regulation of mitosis inferred from genetic interaction with stg (Grosshans and Wieschaus, 2000) inferred from mutant phenotype (Grosshans et al., 2003) ventral furrow formation inferred from genetic interaction with stg (Grosshans and Wieschaus, 2000)
Cellular Component
CV term Evidence References
cytoplasm inferred from direct assay (Grosshans et al., 2003)
Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
gastrulation non-traceable author statement (Lee and Orr-Weaver, 2003, Packer, 2003) negative regulation of mitosis non-traceable author statement (Packer, 2003)
Cellular Component
CV term Evidence References
cytoplasm non-traceable author statement (Packer, 2003)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Z600 allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0004052
Orthologs
OrthoDB Orthologs (13) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6K0R87 Dipteran inclusive ortholog search No orthologs identified Insect inclusive ortholog search No orthologs identified Arthropod inclusive ortholog search No orthologs identified Metazoa inclusive ortholog search No orthologs identified
Orthologs in Drosophila Species (EOG6K0R87)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\Z600     Drosophila simulans   Dsim\GD14545 Y   Drosophila sechellia   Dsec\GM25530 Y   Drosophila erecta   Dere\GG15901 Y   Drosophila yakuba   Dyak\GE22242     Drosophila yakuba   Dyak\GE23146 Y   Drosophila ananassae   Dana\GF23702 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA14745 Y   Drosophila persimilis   Dper\GL24823 Y   Drosophila willistoni   Dwil\GK10594 Y   Drosophila virilis   Dvir\GJ13860 Y   Drosophila mojavensis   Dmoj\GI13113 Y   Drosophila grimshawi   Dgri\GH14542 Y
Orthologs in non-Drosophila Dipterans (None identified)
No non-Drosophilid orthologies identified
Orthologs in non-Dipteran Insects (None identified)
No non-Dipteran orthologies identified
Orthologs in non-Insect Arthropods (None identified)
No non-Insect Arthropod orthologies identified
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD14545 Drosophila sechellia Dsec\GM25530 Drosophila erecta Dere\GG15901 Drosophila yakuba Dyak\GE23146 Drosophila ananassae Dana\GF23702 Drosophila pseudoobscura pseudoobscura Dpse\GA14745 Drosophila persimilis Dper\GL24823 Drosophila willistoni Dwil\GK10594 Drosophila virilis Dvir\GJ13860 Drosophila mojavensis Dmoj\GI13113 Drosophila grimshawi Dgri\GH14542
Stocks & Reagents
Stocks Listed in FlyBase ( 4 )
Bloomington	21407 y1 w67c23; P{EPgy2}Z600EY13120 32953 y1 sc* v1; P{TRiP.HMS00747}attP2
VDRC	v107677 P{KK113033}VIE-260B v23563 w1118; P{GD13652}v23563
Genomic Clones ( 2 )
	BACR07L07 BACR09C21 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 22 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	IP02169 IP02172 IP10311
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones	35095 70890 120168 bs09b11 bs20c01 bs31d08 bs56d10 bs58b05 bs73h05 CK01.118A.D11 EK090712 EK240015 EK242215 RP004106604 RP004126783 RP004198311 RP004233992 RP004259761 RP004468418
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0004052 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 39673
Antibody Information
	polyclonal (Galewsky et al., 1990)
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: Z600 frs (Grosshans et al., 2003)
Additional comments
Other Comments
	Z600 controls the cell cycle pause after precisely thirteen mitoses in embryos. (Grosshans et al., 2003) In embryos lacking Z600 function, cells in the ventral domain enter mitosis too early, causing a defective ventral furrow. (Grosshans et al., 2003) Z600 is required for the ventral inhibition of mitosis that acts during gastrulation to counteract stg specifically in the cells that invaginate to form the mesoderm. (Grosshans and Wieschaus, 2000) In embryos lacking Z600 function, cells in the ventral domain are the first to enter mitosis, such that their pattern of stg RNA expression and the mitotic pattern match each other. (Grosshans and Wieschaus, 2000) Variation of a microsatellite within the Z600 locus has been studied in North American populations of D.melanogaster. (Goldstein and Clark, 1995) The pattern of Z600 protein expression during early embryogenesis has been determined. (Galewsky et al., 1990) The spatial and temporal expression of Z600 RNA has been studied. (Schulz and Miksch, 1989) Identification: Part of an analysis of Eip71CD gene expression. (Schulz et al., 1989) Z600 has been identified and characterised. (Schulz et al., 1989) Member of cluster of genes that includes Eip28/29 and gdl. Believed to play role in processes of early development.
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_079359 RefSeq (Proteins) • NP_524083 DDBJ / EMBL / GenBank • AAF49634 AAF49634.1 CAA41222 X58286 Entrez Gene - A searchable database of RefSeq genes. • 39673 UniProtKB/Swiss-Prot • P22469
Other Crossreferences
	BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • IP02169
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0004052 DRSC - Results from RNAi screens. • FBgn0004052 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0004052 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG17962-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0004052 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 39673 modMine - Data generated by the modENCODE project. • FBgn0004052
Synonyms & Secondary IDs ( 10 )
Reported As
Symbol Synonym	3.2 (Gibson et al., 1999) CG17962 (Lu et al., 2009, Keleman et al., 2009.8.5, Brandt, 2006, Ni et al., 2010.12.1) DMZ60MEX (Fernando Vazquez et al., 2000, Schug et al., 1997) frs (Martin and Parkhurst, 2004, Ip and Gridley, 2002, Packer, 2003, Lee and Orr-Weaver, 2003, Grosshans and Wieschaus, 2000, Greaves, 2000, Johnston, 2000, Grosshans and Wieschaus, 2000, Pilot et al., 2006, Sung and Grosshans, 2007, Liang et al., 2008, Lu et al., 2009, Gawlinski et al., 2007, Brandt, 2006, Insco et al., 2009, Gawlinski et al., 2007, Insco et al., 2009, Papoulas et al., 2010, Sung et al., 2013) Frs (Großhans et al., 2007) z600 (Grosshans et al., 2003, Cherbas, 1990.10.29, Cherbas, 1993, Cherbas and Cherbas, 1997, Goldstein and Clark, 1995, Maroni, 1994, Andres and Cherbas, 1994, Cherbas et al., 1991, Galewsky et al., 1990, Schulz et al., 1990, Schulz et al., 1990, Schulz and Butler, 1989, Schulz et al., 1989, Schulz and Miksch, 1989, Melcher and Pankratz, 2005) Z600 (Sandmann et al., 2007, Reiter et al., 2007, Liang et al., 2008)
Name Synonym	fruhstart (Grosshans and Wieschaus, 2000, Pilot et al., 2006, Großhans et al., 2007, Lu et al., 2009, Insco et al., 2009, Papoulas et al., 2010) Fruhstart (Gawlinski et al., 2007) frustart (Johnston, 2000) Z600
Secondary FlyBase IDs
	FBgn0026799 FBgn0041755
References ( 55 )
Generate a list of	All references relating to this gene ( 55 )
List References by type	Research paper  ( 26 ) Supplementary material  ( 5 ) Review  ( 7 ) Personal communication to FlyBase  ( 5 ) Abstract  ( 6 ) FlyBase analysis  ( 1 ) DNA/RNA sequence record  ( 1 ) Website  ( 1 ) Book  ( 1 ) Protein sequence record  ( 1 )
Recent research papers ( 1 )
	Sung et al., 2013, Curr. Biol. 23(2): 133--138 Number of nuclear divisions in the Drosophila blastoderm controlled by onset of zygotic transcription. [FBrf0220648] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2011 Show reviews ...