FlyBase Gene Report: Dmel\LysS

Hydrolysis of (1->4)-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues in a peptidoglycan and between N-acetyl- D-glucosamine residues in chitodextrins (3.2.1.17)

Summaries

Gene Group (FlyBase)

GH22 FAMILY OF LYSOZYMES -: Lysozymes belong to the glycoside hydrolase family 22. Lysozymes damage bacterial cell walls by hydrolyzing the β-(1,4)-glycosidic bond between N-acetyl-muraminic acid and N-acetyl-D-glucosamine of peptidoglycan, causing cell lysis. (Adapted from PMID:22581338, PMID:20413917, PMID:20049505).

Protein Function (UniProtKB)

Unlikely to play an active role in the humoral immune defense. May have a function in the digestion of bacteria in the food.

(UniProt, P37160)

Gene Model and Products

Number of Transcripts

Number of Unique Polypeptides

Please see the GBrowse view of Dmel\LysS or the JBrowse view of Dmel\LysS for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)

Isoform displayed:

Pfam protein domains

InterPro name

classification

start

end

Protein Domains (via SMART)

Isoform displayed:

SMART protein domains

InterPro name

classification

start

end

Comments on Gene Model

Gene model reviewed during 5.46

Gene model reviewed during 5.48

Sequence Ontology: Class of Gene

nuclear_gene

protein_coding_gene

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Assoc. CDS (aa)

LysS-RA

FBtr0072631

NM_057481

492

140

Additional Transcript Data and Comments

Reported size (kB)

0.482 (longest cDNA)

(Daffre et al., 1994)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank

LysS-PA

FBpp0072527

15.7

140

4.45

NP_476829

AAF47453

Polypeptides with Identical Sequences

There is only one protein coding transcript and one polypeptide associated with this gene

Additional Polypeptide Data and Comments

Reported size (kDa)

139 (aa)

(Daffre et al., 1994)

Comments

External Data

Crossreferences

InterPro - A database of protein families, domains and functional sites

Linkouts

Sequences Consistent with the Gene Model

Nucleotide / Polypeptide Records

UniProt

P37160

Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\LysS using the Feature Mapper tool.

External Data

Crossreferences

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

LysS_1

Linkouts

Gene Ontology (3 terms)

Molecular Function (1 term)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (1 term)

CV Term

Evidence

References

lysozyme activity

inferred from sequence or structural similarity with UniProtKB:P00697

(FlyBase Curators, 2008--)

inferred from sequence or structural similarity

(Daffre et al., 1994)

Biological Process (1 term)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (1 term)

CV Term

Evidence

References

defense response to Gram-negative bacterium

inferred from sequence or structural similarity with UniProtKB:P00697

(FlyBase Curators, 2008--)

Cellular Component (1 term)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (1 term)

CV Term

Evidence

References

extracellular space

inferred from sequence or structural similarity with UniProtKB:C1BF55

(FlyBase Curators, 2008--)

Expression Data

Expression Summary Ribbons

Colored tiles in ribbon indicate that expression data has been curated by FlyBase for that anatomical location. Colorless tiles indicate that there is no curated data for that location.

For complete stage-specific expression data, view the modENCODE Development RNA-Seq section under High-Throughput Expression below.

Transcript Expression

RNase protection, primer extension, SI map

Stage

Tissue/Position (including subcellular localization)

Reference

larval stage

gastric caecum

(Daffre et al., 1994)

Additional Descriptive Data

LysS transcripts are detected in larvae with the highest level at the third instar stage. They are detected mainly in the epithelium of the gastric caecae by in situ hybridization. The levels of LysS transcripts are drastically reduced after bacterial injection.

(Daffre et al., 1994)

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

GBrowse - Visual display of RNA-Seq signals

View Dmel\LysS in GBrowse 2

RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region

View exonic expression by developmental stage for Dmel\LysS

View exonic expression by tissue for Dmel\LysS

Bulk Downloads

RNA-Seq RPKM values for all genes

Reference

See Gelbart and Emmert, 2013 for analysis details and data files for all genes.

Developmental Proteome: Life Cycle

Developmental Proteome: Embryogenesis

External Data and Images

Linkouts

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0004430

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

FBgn0004430

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

CG1165-RA

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG1165

Flygut - An atlas of the Drosophila adult midgut

FBgn0004430

Images

FlyBase Wiki

Image Based Resources

Alleles, Insertions, and Transgenic Constructs

Classical and Insertion Alleles ( 0 )

For All Classical and Insertion Alleles Show

Other relevant insertions

Transgenic Constructs ( 3 )

For All Alleles Carried on Transgenic Constructs Show

Transgenic constructs containing/affecting coding region of LysS

Transgenic constructs containing regulatory region of LysS

Deletions and Duplications ( 0 )

Phenotypes

For more details about a specific phenotype click on the relevant allele symbol.

Lethality

Allele

viable, with Scer\GAL4^Mef2.PR

LysS^GD5939

viable, with Scer\GAL4^pnr-MD237

LysS^GD5939

Phenotype manifest in

Allele

Orthologs

Downloads

Download All DIOPT Orthologs

Download All OrthoDB Orthologs

Human Orthologs (via DIOPT v7.1)

Homo sapiens (Human) (9)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Hsap\LYZ

9 of 15

Yes

5 of 15

5 of 15

4 of 15

4 of 15

4 of 15

3 of 15

3 of 15

1 of 15

Model Organism Orthologs (via DIOPT v7.1)

Mus musculus (laboratory mouse) (9)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Mmus\Lyz1

9 of 15

Yes

Mmus\Lyz2

9 of 15

Yes

6 of 15

6 of 15

6 of 15

5 of 15

5 of 15

3 of 15

3 of 15

Rattus norvegicus (Norway rat) (9)

Rnor\Lyz2

8 of 13

Yes

Rnor\Lyc2

7 of 13

Yes

Rnor\RGD1306474

7 of 13

Rnor\Lyzl1

4 of 13

Rnor\Lyzl6

4 of 13

Yes

4 of 13

3 of 13

3 of 13

3 of 13

Xenopus tropicalis (Western clawed frog) (1)

Xtro\MGC89221

2 of 12

Yes

Danio rerio (Zebrafish) (1)

Drer\lyz

4 of 15

Yes

Caenorhabditis elegans (Nematode, roundworm) (0)

No records found.

Arabidopsis thaliana (thale-cress) (0)

No records found.

Saccharomyces cerevisiae (Brewer's yeast) (0)

No records found.

Schizosaccharomyces pombe (Fission yeast) (0)

No records found.

Orthologs in Drosophila Species (via OrthoDB v9.1) ( EOG09190I6N )

Organism

Common Name

Gene

AAA Syntenic Ortholog

Multiple Dmel Genes in this Orthologous Group

Drosophila melanogaster

fruit fly

Dmel\LysS

Drosophila suzukii

Spotted wing Drosophila

Dsuz\DS10_00004539

Drosophila suzukii

Spotted wing Drosophila

Drosophila simulans

Drosophila simulans

Drosophila erecta

Drosophila yakuba

Drosophila ananassae

Drosophila pseudoobscura pseudoobscura

Dpse\GA11118

Drosophila willistoni

Dwil\GK21117

Orthologs in non-Drosophila Dipterans (via OrthoDB v9.1) ( EOG09150DML )

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Musca domestica

House fly

Mdoa\17020217

Musca domestica

House fly

Mdoa\17011173

Musca domestica

House fly

Mdoa\17020222

Musca domestica

House fly

Mdoa\17019165

Musca domestica

House fly

Mdoa\17023801

Musca domestica

House fly

Mdoa\17023799

Musca domestica

House fly

Mdoa\17020216

Musca domestica

House fly

Mdoa\17011177

Musca domestica

House fly

Mdoa\17020219

Musca domestica

House fly

Mdoa\17006233

Musca domestica

House fly

Mdoa\17011175

Musca domestica

House fly

Mdoa\17020228

Musca domestica

House fly

Mdoa\17017786

Musca domestica

House fly

Mdoa\17019513

Musca domestica

House fly

Mdoa\17020225

Musca domestica

House fly

Mdoa\17020220

Musca domestica

House fly

Mdoa\17015481

Musca domestica

House fly

Mdoa\17011176

Musca domestica

House fly

Mdoa\17013391

Musca domestica

House fly

Mdoa\17011178

Musca domestica

House fly

Mdoa\17011174

Musca domestica

House fly

Mdoa\17020223

Musca domestica

House fly

Mdoa\17020227

Musca domestica

House fly

Mdoa\17015482

Musca domestica

House fly

Mdoa\17011180

Musca domestica

House fly

Mdoa\17021690

Musca domestica

House fly

Mdoa\17021630

Glossina morsitans

Tsetse fly

Gmor\GMOY000104

Glossina morsitans

Tsetse fly

Gmor\GMOY000103

Lucilia cuprina

Australian sheep blowfly

Lcup\FF38_08204

Lucilia cuprina

Australian sheep blowfly

Lcup\FF38_09595

Lucilia cuprina

Australian sheep blowfly

Lcup\FF38_09812

Lucilia cuprina

Australian sheep blowfly

Lcup\FF38_09833

Lucilia cuprina

Australian sheep blowfly

Lcup\FF38_08203

Lucilia cuprina

Australian sheep blowfly

Lcup\FF38_09596

Lucilia cuprina

Australian sheep blowfly

Lcup\FF38_06269

Lucilia cuprina

Australian sheep blowfly

Lcup\FF38_06270

Lucilia cuprina

Australian sheep blowfly

Lcup\FF38_13932

Lucilia cuprina

Australian sheep blowfly

Lcup\FF38_06268

Mayetiola destructor

Hessian fly

Mdes\Mdes004385

Aedes aegypti

Yellow fever mosquito

Aaeg\LYSC7A

Aedes aegypti

Yellow fever mosquito

Aaeg\LYSC11

Aedes aegypti

Yellow fever mosquito

Aaeg\LYSC10

Aedes aegypti

Yellow fever mosquito

Aaeg\LYSC9

Aedes aegypti

Yellow fever mosquito

Aaeg\LYSC7B

Aedes aegypti

Yellow fever mosquito

Aaeg\LYSC4

Anopheles darlingi

American malaria mosquito

Adar\ADAC005092

Anopheles darlingi

American malaria mosquito

Adar\ADAC005629

Anopheles darlingi

American malaria mosquito

Adar\ADAC005089

Anopheles gambiae

Malaria mosquito

Agam\LYSC1

Anopheles gambiae

Malaria mosquito

Agam\LYSC8

Anopheles gambiae

Malaria mosquito

Agam\LYSC3

Anopheles gambiae

Malaria mosquito

Agam\LYSC5

Anopheles gambiae

Malaria mosquito

Agam\LYSC2

Anopheles gambiae

Malaria mosquito

Agam\LYSC7

Culex quinquefasciatus

Southern house mosquito

Cqui\CPIJ005450

Culex quinquefasciatus

Southern house mosquito

Cqui\CPIJ005451

Culex quinquefasciatus

Southern house mosquito

Cqui\CPIJ010731

Culex quinquefasciatus

Southern house mosquito

Cqui\CPIJ010730

Orthologs in non-Dipteran Insects (via OrthoDB v9.1) ( EOG090W0K52 )

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Bombyx mori

Silkmoth

Bmor\BGIBMGA012264

Bombyx mori

Silkmoth

Bmor\BGIBMGA010439

Bombyx mori

Silkmoth

Bmor\Bmo.6205

Danaus plexippus

Monarch butterfly

Dple\DPOGS202823-PA

Danaus plexippus

Monarch butterfly

Dple\DPOGS210298-PA

Danaus plexippus

Monarch butterfly

Dple\DPOGS203026-PA

Danaus plexippus

Monarch butterfly

Dple\DPOGS210308-PA

Danaus plexippus

Monarch butterfly

Dple\DPOGS214912-PA

Heliconius melpomene

Postman butterfly

Hmel\HMEL002661

Heliconius melpomene

Postman butterfly

Hmel\HMEL002877

Heliconius melpomene

Postman butterfly

Hmel\HMEL002874

Heliconius melpomene

Postman butterfly

Hmel\HMEL002880

Apis florea

Little honeybee

Aflo\3083936196

Apis florea

Little honeybee

Aflo\3083936228

Apis mellifera

Western honey bee

Amel\GB40164

Apis mellifera

Western honey bee

Amel\Lys-1

Bombus impatiens

Common eastern bumble bee

Bimp\BIMP17542

Bombus terrestris

Buff-tailed bumblebee

Bter\15205117

Linepithema humile

Argentine ant

Lhum\LH21370

Megachile rotundata

Alfalfa leafcutting bee

Mrot\MROTU:0017d1

Nasonia vitripennis

Parasitic wasp

Nvit\Nasvi2EG001574

Dendroctonus ponderosae

Mountain pine beetle

Dpod\YQE_12289

Dendroctonus ponderosae

Mountain pine beetle

Dpod\YQE_10301

Tribolium castaneum

Red flour beetle

Tcas\TC032586

Tribolium castaneum

Red flour beetle

Tcas\TC033648

Pediculus humanus

Human body louse

Phum\PHUM563940

Rhodnius prolixus

Kissing bug

Rpro\RPRC015442

Rhodnius prolixus

Kissing bug

Rpro\RPRC015440

Rhodnius prolixus

Kissing bug

Rpro\RPRC015441

Cimex lectularius

Bed bug

Clec\CLEC003819

Cimex lectularius

Bed bug

Clec\CLEC025167

Cimex lectularius

Bed bug

Clec\CLEC013272

Cimex lectularius

Bed bug

Clec\CLEC009914

Cimex lectularius

Bed bug

Clec\CLEC003818

Zootermopsis nevadensis

Nevada dampwood termite

Znev\Znev_03738

Zootermopsis nevadensis

Nevada dampwood termite

Znev\Znev_11184

Zootermopsis nevadensis

Nevada dampwood termite

Znev\Znev_17477

Orthologs in non-Insect Arthropods (via OrthoDB v9.1) ( EOG090X0KDK )

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Strigamia maritima

European centipede

Smar\SMAR003951

Strigamia maritima

European centipede

Smar\SMAR006865

Strigamia maritima

European centipede

Smar\SMAR012086

Strigamia maritima

European centipede

Smar\SMAR006871

Strigamia maritima

European centipede

Smar\SMAR015607

Strigamia maritima

European centipede

Smar\SMAR011759

Strigamia maritima

European centipede

Smar\SMAR006862

Strigamia maritima

European centipede

Smar\SMAR012085

Strigamia maritima

European centipede

Smar\SMAR009782

Strigamia maritima

European centipede

Smar\SMAR005230

Strigamia maritima

European centipede

Smar\SMAR006870

Strigamia maritima

European centipede

Smar\SMAR006868

Strigamia maritima

European centipede

Smar\SMAR003952

Strigamia maritima

European centipede

Smar\SMAR006861

Strigamia maritima

European centipede

Smar\SMAR006872

Strigamia maritima

European centipede

Smar\SMAR006866

Strigamia maritima

European centipede

Smar\SMAR006863

Strigamia maritima

European centipede

Smar\SMAR011763

Strigamia maritima

European centipede

Smar\SMAR011761

Strigamia maritima

European centipede

Smar\SMAR011592

Strigamia maritima

European centipede

Smar\SMAR011758

Strigamia maritima

European centipede

Smar\SMAR007453

Strigamia maritima

European centipede

Smar\SMAR011764

Strigamia maritima

European centipede

Smar\SMAR006869

Strigamia maritima

European centipede

Smar\SMAR001436

Ixodes scapularis

Black-legged tick

Isca\ISCW018431

Ixodes scapularis

Black-legged tick

Isca\ISCW017129

Ixodes scapularis

Black-legged tick

Isca\ISCW001645

Stegodyphus mimosarum

African social velvet spider

Smim\KFM64933.1

Stegodyphus mimosarum

African social velvet spider

Smim\KFM60871.1

Stegodyphus mimosarum

African social velvet spider

Smim\KFM63541.1

Tetranychus urticae

Two-spotted spider mite

Turt\tetur21g01120

Tetranychus urticae

Two-spotted spider mite

Turt\tetur21g02460

Tetranychus urticae

Two-spotted spider mite

Turt\tetur09g04040

Daphnia pulex

Water flea

Dpux\DAPPUDRAFT_300634

Orthologs in non-Arthropod Metazoa (via OrthoDB v9.1) ( EOG091G0R9V )

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Ciona intestinalis

Vase tunicate

Cint\ENSCING00000012933

Gallus gallus

Domestic chicken

Ggal\LYZ

Paralogs

Downloads

Download All DIOPT Paralogs

Paralogs (via DIOPT v7.1)

Drosophila melanogaster (Fruit fly) (11)

Gene Symbol

Score

Source

Alignment

8 of 10

7 of 10

7 of 10

7 of 10

7 of 10

7 of 10

5 of 10

4 of 10

4 of 10

4 of 10

3 of 10

Human Disease Associations

FlyBase Human Disease Model Reports

Disease Model Summary Ribbon

Disease Ontology (DO) Annotations

Models Based on Experimental Evidence ( 0 )

Allele

Disease

Evidence

References

Potential Models Based on Orthology ( 1 )

Human Ortholog

Disease

Evidence

References

LYZ; lysozyme

model of familial visceral amyloidosis

IEA

(FlyBase, 2019-)

Modifiers Based on Experimental Evidence ( 0 )

Allele

Disease

Interaction

References

Comments on Models/Modifiers Based on Experimental Evidence ( 0 )

Disease Associations of Human Orthologs (via DIOPT v7.1 and OMIM)

Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.

Homo sapiens (Human)

Gene name

Score

OMIM

OMIM Phenotype

DO term

Complementation?

Transgene?

LYZ; lysozyme

9 of 15

153450

AMYLOIDOSIS, FAMILIAL VISCERAL

familial visceral amyloidosis

LYZL1; lysozyme like 1

5 of 15

LYZL2; lysozyme like 2

5 of 15

612748

LYZL6; lysozyme like 6

4 of 15

612751

SPACA3; sperm acrosome associated 3

4 of 15

612749

SPACA5B; sperm acrosome associated 5B

4 of 15

LALBA; lactalbumin alpha

3 of 15

149750

LYZL4; lysozyme like 4

3 of 15

612750

Functional Complementation Data

Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.

Interactions

Summary of Physical Interactions

esyN Network Diagram

Interactions Browser

Summary of Genetic Interactions

esyN Network Diagram

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

External Data

Linkouts

DroID - A comprehensive database of gene and protein interactions.

FBgn0004430

InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.

38130

Pathways

Gene Group - Pathway Membership (FlyBase)

External Data

Linkouts

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

Genomic Location and Detailed Mapping Data

Chromosome (arm)

Recombination map

3-0

Cytogenetic map

61F4-61F4

Sequence location

3L:1,227,747..1,228,238 [+]

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

61F4-61F4

Limits computationally determined from genome sequence between P{PZ}l(3)05967⁰⁵⁹⁶⁷ and P{PZ}l(3)02640⁰²⁶⁴⁰

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

3-0

(FlyBase, 2016)

3-1.5

(Comeron et al., 2012)

Left of (cM)

Right of (cM)

Notes

Stocks and Reagents

Stocks (3)

Bloomington

58077

y¹ v¹; P{TRiP.HMJ21969}attP40/CyO

VDRC

v108488

P{KK111657}VIE-260B

v13886

w¹¹¹⁸; P{GD5939}v13886

Genomic Clones (16)

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones (11)

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequences

BDGP DGC clones

Other clones

Drosophila Genomics Resource Center cDNA clones

For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

FBgn0004430

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi and Array Information

Linkouts

DRSC - Results frm RNAi screens

FBgn0004430

GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents

38130

Antibody Information

Laboratory Generated Antibodies

Commercially Available Antibodies

Other Information

Relationship to Other Genes

Source for database identify of

Source for database merge of

Source for merge of: LysS BcDNA:LP06719

(FlyBase, 1996-)

Additional comments

Source for merge of LysS BcDNA:LP06719 was a shared cDNA ( date:030728 ).

(FlyBase, 1996-)

Other Comments

Lysozymes are expressed at a high level mainly in the digestive tract, they are not a component of the haemolymph. Lysozyme is not induced by bacteria so is not part of the inducible immune response but instead has been recruited for digestion of symbiotic bacteria in the stomach.

(Daffre et al., 1994)

Origin and Etymology

Discoverer

Etymology

Identification

External Crossreferences and Linkouts ( 34 )

Sequence Crossreferences

NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

38130

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.

RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.

UniProt/Swiss-Prot - Manually annotated and reviewed records of protein sequence and functional information

P37160

Other crossreferences

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0004430

Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones

FBgn0004430

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

LysS_1

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG1165

Flygut - An atlas of the Drosophila adult midgut

FBgn0004430

GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents

38130

InterPro - A database of protein families, domains and functional sites

KEGG Genes - Molecular building blocks of life in the genomic space.

Dmel_CG1165

modMine - A data warehouse for the modENCODE project

FBgn0004430

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

Linkouts

DroID - A comprehensive database of gene and protein interactions.

FBgn0004430

DRSC - Results frm RNAi screens

FBgn0004430

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

FBgn0004430

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

CG1165-RA

FlyMine - An integrated database for Drosophila genomics

FBgn0004430

InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.

38130

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

Synonyms and Secondary IDs (6)

Reported As

Symbol Synonym

BcDNA:LP06719

CG1165

(Ni et al., 2010.12.1, Keleman et al., 2009.8.5, Li et al., 2009)

LysS

(Štětina et al., 2019, Paré et al., 2012, Seong et al., 2011, Li et al., 2009, Blanco et al., 2008, Yan et al., 2008, Waterhouse et al., 2007, Greene et al., 2005)

lysS

(Faisal et al., 2014, Zsindely et al., 2009, Lemaitre, 2000.12.20)

Name Synonyms

Lysozyme S

lysozyme S

(Faisal et al., 2014)

Secondary FlyBase IDs

FBgn0002575
FBgn0063108

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Study focus (0)

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Project

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References (40)

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