A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Gene Dmel\GluRIIA

General Information
SymbolDmel\GluRIIASpeciesD. melanogaster
NameGlutamate receptor IIAAnnotation symbolCG6992
Feature typeprotein_coding_geneFlyBase IDFBgn0004620
Gene Model StatusCurrent Stock availability 3 publicly available
Also Known AsdglurIIA, DGluR-IIA, DGluR-II, GluR, GluRII-A, GluRII, DgluRII
Genomic Location
Chromosome (arm)2LRecombination map
Cytogenetic map25E6-25E6Sequence location2L:5,555,074..5,558,994 [+]

Genomic Maps

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modENCODE GBrowse
detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
The gene Glutamate receptor IIA is referred to in FlyBase by the symbol Dmel\GluRIIA (CG6992, FBgn0004620). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: glutamate receptor activity. There is experimental evidence that it is involved in the biological process: synaptic transmission; regulation of neurotransmitter secretion; regulation of synaptic activity. 22 alleles are reported. The phenotypes of these alleles are annotated with: t-bar; bouton; neuromuscular junction; embryonic/larval neuromuscular junction; type I bouton; synapse; synaptic vesicle. It has one annotated transcript and one annotated polypeptide. Protein features are: Extracellular ligand-binding receptor; Glutamate receptor, L-glutamate/glycine-binding; Ionotropic glutamate receptor; NMDA receptor. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of extremely low expression. Peak expression observed within 12-24 hour embryonic stages, at stages throughout the larval period, at stages throughout the pupal period, in adult male stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult heart, larval carcass. Comments on Affy2 ProbeSet: ProbeSet 1630710_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of GluRIIA. Gene sequence location is 2L:5555074..5558994.

External Summaries
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Description
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FB2012_01
References
Sequence features
FB2011_10
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
25E6-25E6  
Limits computationally determined from genome sequence between P{lacW}Hel25Ek11511 and P{lacW}l(2)k06502k06502  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
25F-25F  
(determined by in situ hybridisation)  
25F-25F  
(determined by in situ hybridisation)  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\GluRIIA for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0079121 FBtr0079104 FBtr0079106 FBtr0089577 FBpp0078752 FBpp0078737 FBpp0078739 FBpp0088541 FBti0145284 FBti0017652 FBti0042827 FBti0075407 FBti0124586_2 FBti0124586_1
Comments on Gene Model
5' UTR of this gene overlaps the 3' UTR of upstream gene CG14017.
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0079106
  3251
  907
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0078739  
104.4  
907  
6.06  
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hidePolypeptide Expression
immunolocalization
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hide High-Throughput Expression Data
or
Untitled Document detailed view CG14017-RA GluRIIA-RI GluRIIB-RI
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

modENCODE Temporal Expression Data for FBgn0004620


   Styles
Linear
Logarithmic
Heatmap
   Scales
max expr for FBgn0004620
Very low expression bin max
Moderate expression bin max
High expression bin max
Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of extremely low expression. Peak expression observed within 12-24 hour embryonic stages, at stages throughout the larval period, at stages throughout the pupal period, in adult male stages.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No expression (0 - 0)
 
Extremely low expression (1 - 10)
 
Very low expression (11 - 100)
 
Low expression (101 - 400)
 
Moderate expression (401 - 1400)
 
Moderately high expression (1401 - 4000)
 
High expression (4001 - 10000)
 
Very high expression (10001 - 100000)
 
Extremely high expression (100001 - 2000000)

Linear, scaled to maximum FBgn0004620 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 5
embryo 02-04hr
 
 67
embryo 04-06hr
 
 8
embryo 06-08hr
 
 15
embryo 08-10hr
 
 28
embryo 10-12hr
 
 142
embryo 12-14hr
 
 464
embryo 14-16hr
 
 955
embryo 16-18hr
 
 955
embryo 18-20hr
 
 1232
embryo 20-22hr
 
 1186
embryo 22-24hr
 
 1326
larva L1
 
 568
larva L2
 
 431
larva L3 12hr old
 
 365
larva L3 puffstage 1-2
 
 225
larva L3 puffstage 3-6
 
 421
larva L3 puffstage 7-9
 
 570
white prepupae new
 
 451
white prepupae 12hr
 
 270
white prepupae 24hr
 
 165
pupae 2d postWPP
 
 202
pupae 3d postWPP
 
 270
pupae 4d postWPP
 
 685
adult male 01day
 
 451
adult male 05day
 
 332
adult male 30day
 
 352
adult female 01day
 
 312
adult female 05day
 
 84
adult female 30day
 
 93
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 5
embryo 02-04hr
 
 67
embryo 04-06hr
 
 8
embryo 06-08hr
 
 15
embryo 08-10hr
 
 28
embryo 10-12hr
 (142)
embryo 12-14hr
 (464)
embryo 14-16hr
 (955)
embryo 16-18hr
 (955)
embryo 18-20hr
 (1232)
embryo 20-22hr
 (1186)
embryo 22-24hr
 (1326)
larva L1
 (568)
larva L2
 (431)
larva L3 12hr old
 (365)
larva L3 puffstage 1-2
 (225)
larva L3 puffstage 3-6
 (421)
larva L3 puffstage 7-9
 (570)
white prepupae new
 (451)
white prepupae 12hr
 (270)
white prepupae 24hr
 (165)
pupae 2d postWPP
 (202)
pupae 3d postWPP
 (270)
pupae 4d postWPP
 (685)
adult male 01day
 (451)
adult male 05day
 (332)
adult male 30day
 (352)
adult female 01day
 (312)
adult female 05day
 
 84
adult female 30day
 
 93
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 5
embryo 02-04hr
 
 67
embryo 04-06hr
 
 8
embryo 06-08hr
 
 15
embryo 08-10hr
 
 28
embryo 10-12hr
 
 142
embryo 12-14hr
 
 464
embryo 14-16hr
 
 955
embryo 16-18hr
 
 955
embryo 18-20hr
 
 1232
embryo 20-22hr
 
 1186
embryo 22-24hr
 
 1326
larva L1
 
 568
larva L2
 
 431
larva L3 12hr old
 
 365
larva L3 puffstage 1-2
 
 225
larva L3 puffstage 3-6
 
 421
larva L3 puffstage 7-9
 
 570
white prepupae new
 
 451
white prepupae 12hr
 
 270
white prepupae 24hr
 
 165
pupae 2d postWPP
 
 202
pupae 3d postWPP
 
 270
pupae 4d postWPP
 
 685
adult male 01day
 
 451
adult male 05day
 
 332
adult male 30day
 
 352
adult female 01day
 
 312
adult female 05day
 
 84
adult female 30day
 
 93
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 5
embryo 02-04hr
 
 67
embryo 04-06hr
 
 8
embryo 06-08hr
 
 15
embryo 08-10hr
 
 28
embryo 10-12hr
 
 142
embryo 12-14hr
 
 464
embryo 14-16hr
 
 955
embryo 16-18hr
 
 955
embryo 18-20hr
 
 1232
embryo 20-22hr
 
 1186
embryo 22-24hr
 
 1326
larva L1
 
 568
larva L2
 
 431
larva L3 12hr old
 
 365
larva L3 puffstage 1-2
 
 225
larva L3 puffstage 3-6
 
 421
larva L3 puffstage 7-9
 
 570
white prepupae new
 
 451
white prepupae 12hr
 
 270
white prepupae 24hr
 
 165
pupae 2d postWPP
 
 202
pupae 3d postWPP
 
 270
pupae 4d postWPP
 
 685
adult male 01day
 
 451
adult male 05day
 
 332
adult male 30day
 
 352
adult female 01day
 
 312
adult female 05day
 
 84
adult female 30day
 
 93
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 5
embryo 02-04hr
 
 67
embryo 04-06hr
 
 8
embryo 06-08hr
 
 15
embryo 08-10hr
 
 28
embryo 10-12hr
 
 142
embryo 12-14hr
 
 464
embryo 14-16hr
 
 955
embryo 16-18hr
 
 955
embryo 18-20hr
 
 1232
embryo 20-22hr
 
 1186
embryo 22-24hr
 
 1326
larva L1
 
 568
larva L2
 
 431
larva L3 12hr old
 
 365
larva L3 puffstage 1-2
 
 225
larva L3 puffstage 3-6
 
 421
larva L3 puffstage 7-9
 
 570
white prepupae new
 
 451
white prepupae 12hr
 
 270
white prepupae 24hr
 
 165
pupae 2d postWPP
 
 202
pupae 3d postWPP
 
 270
pupae 4d postWPP
 
 685
adult male 01day
 
 451
adult male 05day
 
 332
adult male 30day
 
 352
adult female 01day
 
 312
adult female 05day
 
 84
adult female 30day
 
 93
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to maximum FBgn0004620 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 5
embryo 02-04hr
 
 67
embryo 04-06hr
 
 8
embryo 06-08hr
 
 15
embryo 08-10hr
 
 28
embryo 10-12hr
 
 142
embryo 12-14hr
 
 464
embryo 14-16hr
 
 955
embryo 16-18hr
 
 955
embryo 18-20hr
 
 1232
embryo 20-22hr
 
 1186
embryo 22-24hr
 
 1326
larva L1
 
 568
larva L2
 
 431
larva L3 12hr old
 
 365
larva L3 puffstage 1-2
 
 225
larva L3 puffstage 3-6
 
 421
larva L3 puffstage 7-9
 
 570
white prepupae new
 
 451
white prepupae 12hr
 
 270
white prepupae 24hr
 
 165
pupae 2d postWPP
 
 202
pupae 3d postWPP
 
 270
pupae 4d postWPP
 
 685
adult male 01day
 
 451
adult male 05day
 
 332
adult male 30day
 
 352
adult female 01day
 
 312
adult female 05day
 
 84
adult female 30day
 
 93
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 5
embryo 02-04hr
 
 67
embryo 04-06hr
 
 8
embryo 06-08hr
 
 15
embryo 08-10hr
 
 28
embryo 10-12hr
 142
embryo 12-14hr
 (464)
embryo 14-16hr
 (955)
embryo 16-18hr
 (955)
embryo 18-20hr
 (1232)
embryo 20-22hr
 (1186)
embryo 22-24hr
 (1326)
larva L1
 (568)
larva L2
 (431)
larva L3 12hr old
 (365)
larva L3 puffstage 1-2
 (225)
larva L3 puffstage 3-6
 (421)
larva L3 puffstage 7-9
 (570)
white prepupae new
 (451)
white prepupae 12hr
 (270)
white prepupae 24hr
 (165)
pupae 2d postWPP
 (202)
pupae 3d postWPP
 (270)
pupae 4d postWPP
 (685)
adult male 01day
 (451)
adult male 05day
 (332)
adult male 30day
 (352)
adult female 01day
 (312)
adult female 05day
 
 84
adult female 30day
 
 93
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 5
embryo 02-04hr
 
 67
embryo 04-06hr
 
 8
embryo 06-08hr
 
 15
embryo 08-10hr
 
 28
embryo 10-12hr
 
 142
embryo 12-14hr
 
 464
embryo 14-16hr
 
 955
embryo 16-18hr
 
 955
embryo 18-20hr
 
 1232
embryo 20-22hr
 
 1186
embryo 22-24hr
 
 1326
larva L1
 
 568
larva L2
 
 431
larva L3 12hr old
 
 365
larva L3 puffstage 1-2
 
 225
larva L3 puffstage 3-6
 
 421
larva L3 puffstage 7-9
 
 570
white prepupae new
 
 451
white prepupae 12hr
 
 270
white prepupae 24hr
 
 165
pupae 2d postWPP
 
 202
pupae 3d postWPP
 
 270
pupae 4d postWPP
 
 685
adult male 01day
 
 451
adult male 05day
 
 332
adult male 30day
 
 352
adult female 01day
 
 312
adult female 05day
 
 84
adult female 30day
 
 93
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 5
embryo 02-04hr
 
 67
embryo 04-06hr
 
 8
embryo 06-08hr
 
 15
embryo 08-10hr
 
 28
embryo 10-12hr
 
 142
embryo 12-14hr
 
 464
embryo 14-16hr
 
 955
embryo 16-18hr
 
 955
embryo 18-20hr
 
 1232
embryo 20-22hr
 
 1186
embryo 22-24hr
 
 1326
larva L1
 
 568
larva L2
 
 431
larva L3 12hr old
 
 365
larva L3 puffstage 1-2
 
 225
larva L3 puffstage 3-6
 
 421
larva L3 puffstage 7-9
 
 570
white prepupae new
 
 451
white prepupae 12hr
 
 270
white prepupae 24hr
 
 165
pupae 2d postWPP
 
 202
pupae 3d postWPP
 
 270
pupae 4d postWPP
 
 685
adult male 01day
 
 451
adult male 05day
 
 332
adult male 30day
 
 352
adult female 01day
 
 312
adult female 05day
 
 84
adult female 30day
 
 93
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 5
embryo 02-04hr
 
 67
embryo 04-06hr
 
 8
embryo 06-08hr
 
 15
embryo 08-10hr
 
 28
embryo 10-12hr
 
 142
embryo 12-14hr
 
 464
embryo 14-16hr
 
 955
embryo 16-18hr
 
 955
embryo 18-20hr
 
 1232
embryo 20-22hr
 
 1186
embryo 22-24hr
 
 1326
larva L1
 
 568
larva L2
 
 431
larva L3 12hr old
 
 365
larva L3 puffstage 1-2
 
 225
larva L3 puffstage 3-6
 
 421
larva L3 puffstage 7-9
 
 570
white prepupae new
 
 451
white prepupae 12hr
 
 270
white prepupae 24hr
 
 165
pupae 2d postWPP
 
 202
pupae 3d postWPP
 
 270
pupae 4d postWPP
 
 685
adult male 01day
 
 451
adult male 05day
 
 332
adult male 30day
 
 352
adult female 01day
 
 312
adult female 05day
 
 84
adult female 30day
 
 93
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

FlyAtlas Anatomical Expression Data for FBgn0004620


   Styles
Linear
Logarithmic
Heatmap
Back-to-back
   Scales
max expr for FBgn0004620
Moderate expression bin max
High level expression bin max
Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult heart, larval carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (1000 - 25000)

Linear, scaled to maximum FBgn0004620 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 4.075
Larval Midgut
 
 21.6
Larval Hindgut
 
 45.1
Larval Malpighian Tubules
 
 56.5
Larval Fat Body
 
 5.9
Larval Salivary Gland
 
 4.2
Larval Trachea
 
 8.3
Larval Carcass
 
 132.3
Adult Head
 
 19.4
Adult Eye no informative data
Adult Brain
 
 37.8
Adult Thoracic-Abdominal Ganglion
 
 27.2
Adult Crop
 
 42.2
Adult Midgut
 
 20
Adult Hindgut
 
 67.4
Adult Malpighian Tubules no informative data
Adult Fat Body no informative data
Adult Salivary Gland
 
 9.6
Adult Heart
 
 135.575
Adult VirginFemale Spermatheca
 
 16.9
Adult InseminatedFemale Spermatheca
 
 25.7
Adult Ovary
 
 3.2
Adult Testis
 
 11.5
Adult Male Accessory Gland
 
 28.3
Adult Carcass
 
 31.4
Expression Level Scale
 None 
 Low 
 Moderate 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 4.075
Larval Midgut
 
 21.6
Larval Hindgut
 
 45.1
Larval Malpighian Tubules
 
 56.5
Larval Fat Body
 
 5.9
Larval Salivary Gland
 
 4.2
Larval Trachea
 
 8.3
Larval Carcass
 
 132.3
Adult Head
 
 19.4
Adult Eye no informative data
Adult Brain
 
 37.8
Adult Thoracic-Abdominal Ganglion
 
 27.2
Adult Crop
 
 42.2
Adult Midgut
 
 20
Adult Hindgut
 
 67.4
Adult Malpighian Tubules no informative data
Adult Fat Body no informative data
Adult Salivary Gland
 
 9.6
Adult Heart
 
 135.575
Adult VirginFemale Spermatheca
 
 16.9
Adult InseminatedFemale Spermatheca
 
 25.7
Adult Ovary
 
 3.2
Adult Testis
 
 11.5
Adult Male Accessory Gland
 
 28.3
Adult Carcass
 
 31.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 4.075
Larval Midgut
 
 21.6
Larval Hindgut
 
 45.1
Larval Malpighian Tubules
 
 56.5
Larval Fat Body
 
 5.9
Larval Salivary Gland
 
 4.2
Larval Trachea
 
 8.3
Larval Carcass
 
 132.3
Adult Head
 
 19.4
Adult Eye no informative data
Adult Brain
 
 37.8
Adult Thoracic-Abdominal Ganglion
 
 27.2
Adult Crop
 
 42.2
Adult Midgut
 
 20
Adult Hindgut
 
 67.4
Adult Malpighian Tubules no informative data
Adult Fat Body no informative data
Adult Salivary Gland
 
 9.6
Adult Heart
 
 135.575
Adult VirginFemale Spermatheca
 
 16.9
Adult InseminatedFemale Spermatheca
 
 25.7
Adult Ovary
 
 3.2
Adult Testis
 
 11.5
Adult Male Accessory Gland
 
 28.3
Adult Carcass
 
 31.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 4.075
Larval Midgut
 
 21.6
Larval Hindgut
 
 45.1
Larval Malpighian Tubules
 
 56.5
Larval Fat Body
 
 5.9
Larval Salivary Gland
 
 4.2
Larval Trachea
 
 8.3
Larval Carcass
 
 132.3
Adult Head
 
 19.4
Adult Eye no informative data
Adult Brain
 
 37.8
Adult Thoracic-Abdominal Ganglion
 
 27.2
Adult Crop
 
 42.2
Adult Midgut
 
 20
Adult Hindgut
 
 67.4
Adult Malpighian Tubules no informative data
Adult Fat Body no informative data
Adult Salivary Gland
 
 9.6
Adult Heart
 
 135.575
Adult VirginFemale Spermatheca
 
 16.9
Adult InseminatedFemale Spermatheca
 
 25.7
Adult Ovary
 
 3.2
Adult Testis
 
 11.5
Adult Male Accessory Gland
 
 28.3
Adult Carcass
 
 31.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to maximum FBgn0004620 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 4.075
Larval Midgut
 
 21.6
Larval Hindgut
 
 45.1
Larval Malpighian Tubules
 
 56.5
Larval Fat Body
 
 5.9
Larval Salivary Gland
 
 4.2
Larval Trachea
 
 8.3
Larval Carcass
 
 132.3
Adult Head
 
 19.4
Adult Eye no informative data
Adult Brain
 
 37.8
Adult Thoracic-Abdominal Ganglion
 
 27.2
Adult Crop
 
 42.2
Adult Midgut
 
 20
Adult Hindgut
 
 67.4
Adult Malpighian Tubules no informative data
Adult Fat Body no informative data
Adult Salivary Gland
 
 9.6
Adult Heart
 
 135.575
Adult VirginFemale Spermatheca
 
 16.9
Adult InseminatedFemale Spermatheca
 
 25.7
Adult Ovary
 
 3.2
Adult Testis
 
 11.5
Adult Male Accessory Gland
 
 28.3
Adult Carcass
 
 31.4
Expression Level Scale
 None 
 Low 
 Moderate 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 4.075
Larval Midgut
 
 21.6
Larval Hindgut
 
 45.1
Larval Malpighian Tubules
 
 56.5
Larval Fat Body
 
 5.9
Larval Salivary Gland
 
 4.2
Larval Trachea
 
 8.3
Larval Carcass
 
 132.3
Adult Head
 
 19.4
Adult Eye no informative data
Adult Brain
 
 37.8
Adult Thoracic-Abdominal Ganglion
 
 27.2
Adult Crop
 
 42.2
Adult Midgut
 
 20
Adult Hindgut
 
 67.4
Adult Malpighian Tubules no informative data
Adult Fat Body no informative data
Adult Salivary Gland
 
 9.6
Adult Heart
 
 135.575
Adult VirginFemale Spermatheca
 
 16.9
Adult InseminatedFemale Spermatheca
 
 25.7
Adult Ovary
 
 3.2
Adult Testis
 
 11.5
Adult Male Accessory Gland
 
 28.3
Adult Carcass
 
 31.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 4.075
Larval Midgut
 
 21.6
Larval Hindgut
 
 45.1
Larval Malpighian Tubules
 
 56.5
Larval Fat Body
 
 5.9
Larval Salivary Gland
 
 4.2
Larval Trachea
 
 8.3
Larval Carcass
 
 132.3
Adult Head
 
 19.4
Adult Eye no informative data
Adult Brain
 
 37.8
Adult Thoracic-Abdominal Ganglion
 
 27.2
Adult Crop
 
 42.2
Adult Midgut
 
 20
Adult Hindgut
 
 67.4
Adult Malpighian Tubules no informative data
Adult Fat Body no informative data
Adult Salivary Gland
 
 9.6
Adult Heart
 
 135.575
Adult VirginFemale Spermatheca
 
 16.9
Adult InseminatedFemale Spermatheca
 
 25.7
Adult Ovary
 
 3.2
Adult Testis
 
 11.5
Adult Male Accessory Gland
 
 28.3
Adult Carcass
 
 31.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 4.075
Larval Midgut
 
 21.6
Larval Hindgut
 
 45.1
Larval Malpighian Tubules
 
 56.5
Larval Fat Body
 
 5.9
Larval Salivary Gland
 
 4.2
Larval Trachea
 
 8.3
Larval Carcass
 
 132.3
Adult Head
 
 19.4
Adult Eye no informative data
Adult Brain
 
 37.8
Adult Thoracic-Abdominal Ganglion
 
 27.2
Adult Crop
 
 42.2
Adult Midgut
 
 20
Adult Hindgut
 
 67.4
Adult Malpighian Tubules no informative data
Adult Fat Body no informative data
Adult Salivary Gland
 
 9.6
Adult Heart
 
 135.575
Adult VirginFemale Spermatheca
 
 16.9
Adult InseminatedFemale Spermatheca
 
 25.7
Adult Ovary
 
 3.2
Adult Testis
 
 11.5
Adult Male Accessory Gland
 
 28.3
Adult Carcass
 
 31.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye no informative data
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules no informative data
Adult Fat Body no informative data
Adult Salivary Gland
 
 
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass
 
 

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 19.4
 
NA 
Eye
 
 no informative data
 
NA 
Brain
 
 37.8
 
4.075 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 27.2
 
NA 
Crop
 
 42.2
 
21.6 
Midgut
 
 20
 
45.1 
Hindgut
 
 67.4
 
56.5 
Malpighian Tubules
 
 no informative data
 
5.9 
Fat Body
 
 no informative data
 
4.2 
Salivary Gland
 
 9.6
 
NA 
Heart
 
 135.575
 
8.3 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 16.9
 
NA 
InseminatedFemale Spermatheca
 
 25.7
 
NA 
Ovary
 
 3.2
 
NA 
Testis
 
 11.5
 
NA 
Male Accessory Gland
 
 28.3
 
132.3 
Carcass
 
 31.4

modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
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Allele
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Allele
Phenotype manifest in
Allele
hide Classical Alleles ( 5 )
For All Classical Alleles Show

Allele of GluRIIAClassMutagenStocksKnown lesion
GluRIIAMB01746
1 --
GluRIIAAD9loss of function allele0 Yes
GluRIIAg9
0 --
GluRIIASP16loss of function allele0 Yes
GluRIIAunspecified
0 --
hide Alleles Carried on Transgenic Constructs ( 17 )
For All Alleles Carried on Transgenic Constructs Show

Allele of GluRIIAClassMutagenStocksKnown lesion
GluRIIAJF026471 Yes
GluRIIAKK1054371 Yes
GluRIIA+t.cSa0 --
GluRIIA+tg0 Yes
GluRIIA+tRa0 Yes
GluRIIAGD9160 Yes
GluRIIAGluRIIB.CTD.T:Avic\GFP-EGFP0 Yes
GluRIIAhypo.Scer\UAS0 Yes
GluRIIAM614R.Scer\UAS.T:Hsap\MYC0 Yes
GluRIIAMhc.PP0 Yes
GluRIIAMhc.T:Hsap\MYC0 Yes
GluRIIAScer\UAS.cPa0 Yes
GluRIIAScer\UAS.T:Avic\GFP0 Yes
GluRIIAScer\UAS.T:Hsap\MYC0 Yes
GluRIIAT:Avic\GFP-EGFP0 Yes
GluRIIAT:Avic\GFP-PA0 Yes
GluRIIAT:Disc\RFP-mRFP0 Yes
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Transgenic Constructs
Type of construct
Name
Expression data
Insertions
Type of insertions
Name
Expression data
insertion of enhancer trap
insertion of enhancer trap binary system
hide Gene Ontology: Function, Process & Cellular Component ( 12 unique terms )
hide Terms Based on Experimental Evidence ( 8 terms )
Molecular Function
CV term
References
Biological Process
CV term
References
inferred from genetic interaction with Exn, cac
inferred from direct assay
inferred from mutant phenotype
inferred from direct assay
inferred from mutant phenotype
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CV term
References
inferred from direct assay AND inferred from sequence or structural similarity with rat Grik5
inferred from direct assay
colocalizes_with
postsynaptic membrane
inferred from direct assay
hide Terms Based on Predictions or Assertions ( 4 terms )
Molecular Function
CV term
References
inferred from sequence or structural similarity
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CV term
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inferred from electronic annotation with InterPro:IPR001508
Cellular Component ( 0 terms)
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Please look at the allele data for full details of the genetic interactions
GluRIIA allele
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Bloomington
VDRC
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Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
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cDNA Clones, End Sequenced (ESTs)
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Source for database identity of
Source for identity of: GluRIIA CG6992
Source for database merge of
Additional comments
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GluRIIC is required for synaptic localisation of GluRIIA and GluRIIB proteins. Either GluRIIA or GluRIIB, but not both, is required for synaptic localisation of GluRIIC protein. GluRIIA and GluRIIB proteins compete with each other for access to GluRIIC protein and subsequent localisation to the synapse.
Study of mutants reveals that a decrease in postsynaptic receptors leads to an increase in presynaptic transmitter release, indicating that postsynaptic activity controls a retrograde signal that regulates presynaptic function.
Developmental changes of GluRIIA distribution in wild-type embryos are characterised. GluRIIA receptors are found clustered in the non-nerve-contacted areas at the beginning of synaptogenesis. As synapse formation proceeds these clusters disperse and are found at the neuromuscular junction. By rearing parats1 embryos, at restrictive temperatures, starting at different times during synaptogenesis, it is found that neural activity at a certain period of development profoundly affects the distribution of GluRIIA receptors.
Temporal and spatial expression patterns during embryogenesis and in larval muscle are determined.
Glutamate receptor channels in Drosophila embryos and larvae have been studied using the patch-clamp technique.
Receptor localization can be determined by application of L-glutamate and monitering with patch clamping techniques.
In aneural pros mutants functional glutamate receptors are expressed at normal time and distribution over the muscle surface but subsequently fail to cluster to the neuromuscular junction as they would in wild type. The second phase of glutamate receptor synthesis characteristic of wild type fails to occur. The few pros mutants where innervation occurs, but is delayed, show late clustering and late second phase synthesis of glutamate receptors, indicating that these events are innervation-dependent. Likewise, if the neuromuscular junction occurs at an aberrant site, so does the glutamate receptor cluster.
GluRIIA expression in the postsynaptic membrane is reduced by changes in presynaptic electrical activity. Presynaptic electrical activity during embryonic synaptogenesis is constitutively required for GluRIIA expression at the NMJ and to induce receptor clustering at the NMJ.
GluRIIA has been cloned and sequenced.
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Linkouts
BioGRID - A database of protein and genetic interactions
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Synonyms & Secondary IDs ( 29 )
Reported As
Symbol Synonym
Glu-RII
 
Name Synonym
glutamate IIA receptor
glutamate receptor
Glutamate receptor IIA
 
Secondary FlyBase IDs
hide References ( 144 )
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hide Recent research papers ( 12 )
Müller et al., 2011, Neuron 69(4): 749--762
Rab3-GAP Controls the Progression of Synaptic Homeostasis at a Late Stage of Vesicle Release. [FBrf0213055]
Pilgram et al., 2011, J. Neurosci. 31(2): 492--500
The RhoGAP crossveinless-c Interacts with Dystrophin and Is Required for Synaptic Homeostasis at the Drosophila Neuromuscular Junction. [FBrf0212767]
Sun et al., 2011, J. Neurosci. 31(2): 687--699
Neuroligin 2 is required for synapse development and function at the Drosophila neuromuscular junction. [FBrf0212770]
Chen et al., 2010, PLoS ONE 5(6): e11115
Neurexin in embryonic Drosophila neuromuscular junctions. [FBrf0211087]
Croset et al., 2010, PLoS Genet. 6(8):
Ancient protostome origin of chemosensory ionotropic glutamate receptors and the evolution of insect taste and olfaction. [FBrf0211681]
Higashi-Kovtun et al., 2010, J. Neurosci. 30(15): 5253--5268
Importin-beta11 regulates synaptic phosphorylated mothers against decapentaplegic, and thereby influences synaptic development and function at the Drosophila neuromuscular junction. [FBrf0210588]
Kuromi et al., 2010, Europ. J. Neurosci. 32(3): 335--346
Two types of Ca channel linked to two endocytic pathways coordinately maintain synaptic transmission at the Drosophila synapse. [FBrf0211498]
Marie et al., 2010, J. Neurosci. 30(24): 8071--8082
Synaptic homeostasis is consolidated by the cell fate gene gooseberry, a Drosophila pax3/7 homolog. [FBrf0211066]
Morimoto et al., 2010, Neuroscience 165(4): 1284--1292
Subunit-specific and homeostatic regulation of glutamate receptor localization by CaMKII in Drosophila neuromuscular junctions. [FBrf0209866]
Owald et al., 2010, J. Cell Biol. 188(4): 565--579
A Syd-1 homologue regulates pre- and postsynaptic maturation in Drosophila. [FBrf0210057]
Tsurudome et al., 2010, Neuron 68(5): 879--893
The Drosophila miR-310 Cluster Negatively Regulates Synaptic Strength at the Neuromuscular Junction. [FBrf0212495]
Wang et al., 2010, J. Cell Sci. 123(9): 1546--1556
Drosophila twinfilin is required for cell migration and synaptic endocytosis. [FBrf0210650]
hide Recent reviews (0)
All reviews listed in FlyBase were published before 2010