A Database of Drosophila Genes & Genomes

FB2008_07, released August 8, 2008
 

Gene Dmel\fs(1)h

General Information
SymbolDmel\fs(1)hSpeciesD. melanogaster
Namefemale sterile (1) homeoticAnnotation symbolCG2252
Feature typeprotein_coding_geneFlyBase IDFBgn0004656
Created / Updated2003-12-01/2003-12-01
Genomic Location
Chromosome (arm)XRecombination map1-21.65
Cytogenetic map7D3-7D5Sequence locationX:7,933,976..7,955,469 [-]
Map ( GBrowse ) detailed view
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Automatically generated summary

See sections below for more information
The gene female sterile (1) homeotic is referred to in FlyBase by the symbol fs(1)h (CG2252, FBgn0004656). It has the cytological map location 7D3-7D5. Its sequence location is X:7933976..7955469. Its molecular function is described as: DNA binding; protein kinase activity. It is involved in the biological process regulation of transcription from RNA polymerase II promoter. 33 alleles are reported. The phenotypes of these alleles are annotated with: metathoracic segment; egg; hypostomal sclerite; mouth hooks; embryonic head. It has 5 annotated transcripts and 5 annotated polypeptides.

External Summaries
hide Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
Gene/Allele symbols may differ from current usage
fs(1)h: female sterile (1) homeotic
Many mutant alleles at this locus are nonconditional lethals, but there are three temperature-sensitive hypomorphic alleles. fs(1)h1 is the weakest of these and many of the phenotypic studies have been carried out on it and on Df(1)C128, which is deficient for the locus. Temperature-sensitive genotypes display two periods of sensitivity to elevated temperature; one is during oogenesis and affects embryonic development and the other is during the pupal stage and affects adult survival. Adult survival of fs(1)h1 homozygotes and fs(1)h1/Df(1)C128 heterozygotes is normal at 20 and 25, but 10% and 0 respectively at 28.5. As mentioned above, the TSP for lethality is the pupal stage. fs(1)h15 shown to be lethal in germ-line clones (Perrimon, Engstrom, and Mahowald, 1984a, Dev. Biol. 105: 404-14). Fertility of fs(1)h homozygotes and fs(1)h/Df(1)C128 temperature sensitive with the former becoming completely sterile at 29 and the latter at 25; temperature-sensitive periods for fs(1)h/Df(1)C128 females during pregastrulation embryogenesis and perhaps late oogenesis. Eggs laid at restrictive temperatures exhibited normal preblastoderm development, although about half the nuclei are haploid; nuclear behavior during blastoderm formation disrupted and development arrested in blastoderm or early gastrulation. Larvae and adults surviving semi-permissive temperatures display homeotic anomalies; dead embryos, and newly hatched larvae frequently have missing thoracic and anterior abdominal segments; surviving adults exhibit a sex ratio skewed in favor of males and frequently show missing halteres and less frequently third legs; effects are more severe in progeny of fs(1)h/Df(1)C128 than homozygous fs(1)h females, in daughters than sons, and at 25 than 23; small areas of homeotic transformations of anterior metathoracic to anterior mesothoracic structures also seen. The maternal effect of fs(1)h interacts synergistically with Ubx130, Df(3R)red, and trx, but not bx3 or pbx.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
7D3-7D5  
Limits computationally determined from genome sequence between P{EP}snEP1217 and P{EP}Ubc-E2HEP1303  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
7D5-7D6
There is a discrepancy between the in situ localisation (12C) and the molecular localisation based on the flanking sequence (7D5--7D6) for the "l(1)G0495" (fs(1)hG0495) line. The available data suggests that it is most likely that the molecular localisation (7D5--7D6) is correct and that the in situs were misinterpreted.  
7D3-7D4
(determined by in situ hybridisation)  
12C-12C
(determined by in situ hybridisation) 7D3--4 (determined by in situ hybridisation)  
7D5-7D6
(determined by in situ hybridisation)  
7D4-7D6
(determined by in situ hybridisation)  
Experimentally Determined Recombination Data
Location
1-21.65
 
Left of (cM)
Right of (cM)
Notes
Molecular Map Data
Gene Order (in direction of increasing cytology)
References
Gene Order (overall orientation not stated)
References
hide Gene Model & Products
Please see the GBrowse view of Dmel\fs(1)h for information on other features
detailed view FBtr0071119 FBtr0071122 FBtr0071121 FBtr0071120 FBtr0071118 FBtr0071105 FBpp0089298 FBpp0071073 FBpp0089299 FBpp0089297 FBpp0071074 FBti0015686 FBti0071576 FBti0037232 FBti0066320 FBti0034587 FBti0035681 FBti0028105 FBti0049152 FBti0024538 FBti0058872 FBti0071855 FBti0036824 FBti0034180 FBti0033864 FBti0038083 FBti0055479 FBti0055292 FBti0034119 FBti0007355 FBti0007313 FBti0040123 FBti0054224 FBti0018655 FBti0013939
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0071118
  6053
  1110
FBtr0071119
  7790
  2038
FBtr0071120
  5941
  1110
FBtr0071121
  5934
  1110
FBtr0071122
  5665
  1110
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kD)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0071073  
110.6  
1110  
9.83  
FBpp0071074  
205.3  
2038  
9.75  
FBpp0089297  
110.6  
1110  
9.83  
FBpp0089298  
110.6  
1110  
9.83  
FBpp0089299  
110.6  
1110  
9.83  
Additional Polypeptide Data & Comments
Reported size (kD)
Comments
External Data
Linkouts
PANTHER - Protein classification by function, families, and pathways
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Bromodomain (IPR001487)
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
 
 
 
 
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
    Maps to
    Does NOT map to
    Identified with
    hide Mapped Features & Mutations
    Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here
    Type
    Symbol & Location
    Additional Notes
    References
    hide External Data
    Linkouts
    DEDB - Drosophila exon database: splicing graphs
    Crossreferences
    hide Expression Data
    FlyBase-Curated Data
    Transcript and
    Protein data
    Please see the FlyBase Gene Expression Report for details of gene expression from the literature.
    hide Summary of Transcript Expression
    Stage
    Tissue/Position
    Reference
    Marker for
      Subcellular Localization
      CV Term
      hide Summary of Polypeptide Expression
      Stage
      Tissue/Position
      Reference
      Marker for
        Subcellular Localization
        CV Term
        hide Microarray Data
        Developmental timecourse, Costello et al., 2008 (Original data from Arbeitman et al., 2002)
        Untitled Document detailed view FBtr0071119 FBtr0071122 FBtr0071121 FBtr0071120 FBtr0071118 FBtr0071105
        hide External Data & Images
        Linkouts
        FLIGHT - Cell culture data for RNAi and other high-throughput technologies
        FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
        GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies
        FlyExpress - Embryonic expression images (BDGP data)
        hide Alleles & Phenotypes
        hide Summary of Allele Phenotypes
        Lethality
        Allele
        Sterility
        Allele
        Phenotype manifest in
        Allele
        hide Classical Alleles ( 32 )
        For All Classical Alleles Show

        Allele of fs(1)hClassMutagenStocksKnown lesion
        fs(1)h100 --
        fs(1)h110 --
        fs(1)h120 --
        fs(1)h130 --
        fs(1)h140 --
        fs(1)h150 --
        fs(1)h160 --
        fs(1)h170 Yes