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Gene Dmel\Ccp84Aa

General Information
Symbol	Dmel\Ccp84Aa	Species	D. melanogaster
Name	Ccp84Aa	Annotation symbol	CG2360
Feature type	protein_coding_gene	FlyBase ID	FBgn0004783
Gene Model Status	Current	Stock availability	2 publicly available
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	84A4-84A5	Sequence location	3R:2,529,806..2,530,625 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Ccp84Aa is referred to in FlyBase by the symbol Dmel\Ccp84Aa (CG2360, FBgn0004783). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: structural constituent of chitin-based cuticle; structural constituent of chitin-based larval cuticle. The biological processes in which it is involved are not known. One allele is reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Insect cuticle protein. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of no expression detected. Peak expression observed during early larval stages. Summary of FlyAtlas Anatomical Expression Data: No FlyAtlas data available because no Affy2 ProbeSet aligns to an exon of Ccp84Aa. Comments on Affy2 ProbeSet: No relevant information because no Affy2 ProbeSet aligns to an exon of Ccp84Aa. Gene sequence location is 3R:2529806..2530625.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 84A4-84A5   Limits computationally determined from genome sequence between P{PZ}lab01241 and P{PZ}pb04498
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\Ccp84Aa for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.50
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Ccp84Aa-RA FBtr0081691  NM_141426   765   205
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Ccp84Aa-PA   FBpp0081189   21.4   205   7.92     NP_649683   AAF54090
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Insect cuticle protein (IPR000618)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014297 AAF54090   AE001572 AAD19803   AY070676   BI609334   BT011017   CO292001   EC224061
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9V3L8
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism | faint & ubiquitous   (Fisher et al., 2012) embryonic stage 7 -- 8   organism | faint & ubiquitous   (Fisher et al., 2012) embryonic stage 9 -- 10   organism | faint & ubiquitous   (Fisher et al., 2012) embryonic stage 11 -- 12   organism | faint & ubiquitous   (Fisher et al., 2012) embryonic stage 13 -- 16   embryonic head epidermis   (Fisher et al., 2012) embryonic/larval midgut   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    2 central nervous system, pupae P8    0 head, virgin 1-day female    13 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    3 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    2 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    1 fat body, pupae P8    2 carcass, larvae L3 wandering    2 carcass, 1-day adult    2 carcass, 4-day adult    1 carcass, 20-day adult    0 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    0 accessory gland, mated 4-day male    0 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    2 central nervous system, pupae P8    0 head, virgin 1-day female    13 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    3 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    2 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    1 fat body, pupae P8    2 carcass, larvae L3 wandering    2 carcass, 1-day adult    2 carcass, 4-day adult    1 carcass, 20-day adult    0 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    0 accessory gland, mated 4-day male    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    2 central nervous system, pupae P8    0 head, virgin 1-day female    13 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    3 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    2 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    1 fat body, pupae P8    2 carcass, larvae L3 wandering    2 carcass, 1-day adult    2 carcass, 4-day adult    1 carcass, 20-day adult    0 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    0 accessory gland, mated 4-day male    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    2 central nervous system, pupae P8    0 head, virgin 1-day female    13 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    3 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    2 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    1 fat body, pupae P8    2 carcass, larvae L3 wandering    2 carcass, 1-day adult    2 carcass, 4-day adult    1 carcass, 20-day adult    0 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    0 accessory gland, mated 4-day male    0 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    2 central nervous system, pupae P8    0 head, virgin 1-day female    13 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    3 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    2 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    1 fat body, pupae P8    2 carcass, larvae L3 wandering    2 carcass, 1-day adult    2 carcass, 4-day adult    1 carcass, 20-day adult    0 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    0 accessory gland, mated 4-day male    0 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    2 central nervous system, pupae P8    0 head, virgin 1-day female    13 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    3 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    2 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    1 fat body, pupae P8    2 carcass, larvae L3 wandering    2 carcass, 1-day adult    2 carcass, 4-day adult    1 carcass, 20-day adult    0 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    0 accessory gland, mated 4-day male    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    2 central nervous system, pupae P8    0 head, virgin 1-day female    13 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    3 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    2 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    1 fat body, pupae P8    2 carcass, larvae L3 wandering    2 carcass, 1-day adult    2 carcass, 4-day adult    1 carcass, 20-day adult    0 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    0 accessory gland, mated 4-day male    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    2 central nervous system, pupae P8    0 head, virgin 1-day female    13 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    3 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    2 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    1 fat body, pupae P8    2 carcass, larvae L3 wandering    2 carcass, 1-day adult    2 carcass, 4-day adult    1 carcass, 20-day adult    0 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    0 accessory gland, mated 4-day male    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of no expression detected. Peak expression observed during early larval stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    6 embryo 16-18hr    43 embryo 18-20hr    131 embryo 20-22hr    41 embryo 22-24hr    23 larva L1    6 larva L2    24 larva L3 12hr old    148 larva L3 puffstage 1-2    1 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    1 white prepupae 12hr    109 white prepupae 24hr    2 pupae 2d postWPP    3 pupae 3d postWPP    1 pupae 4d postWPP    4 adult male 01day    5 adult male 05day    0 adult male 30day    0 adult female 01day    6 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    6 embryo 16-18hr  (43) embryo 18-20hr  (131) embryo 20-22hr  (41) embryo 22-24hr    23 larva L1    6 larva L2    24 larva L3 12hr old  (148) larva L3 puffstage 1-2    1 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    1 white prepupae 12hr  (109) white prepupae 24hr    2 pupae 2d postWPP    3 pupae 3d postWPP    1 pupae 4d postWPP    4 adult male 01day    5 adult male 05day    0 adult male 30day    0 adult female 01day    6 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    6 embryo 16-18hr    43 embryo 18-20hr  (131) embryo 20-22hr    41 embryo 22-24hr    23 larva L1    6 larva L2    24 larva L3 12hr old  (148) larva L3 puffstage 1-2    1 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    1 white prepupae 12hr  (109) white prepupae 24hr    2 pupae 2d postWPP    3 pupae 3d postWPP    1 pupae 4d postWPP    4 adult male 01day    5 adult male 05day    0 adult male 30day    0 adult female 01day    6 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    6 embryo 16-18hr    43 embryo 18-20hr    131 embryo 20-22hr    41 embryo 22-24hr    23 larva L1    6 larva L2    24 larva L3 12hr old    148 larva L3 puffstage 1-2    1 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    1 white prepupae 12hr    109 white prepupae 24hr    2 pupae 2d postWPP    3 pupae 3d postWPP    1 pupae 4d postWPP    4 adult male 01day    5 adult male 05day    0 adult male 30day    0 adult female 01day    6 adult female 05day    0 adult female 30day    0 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    6 embryo 16-18hr    43 embryo 18-20hr    131 embryo 20-22hr    41 embryo 22-24hr    23 larva L1    6 larva L2    24 larva L3 12hr old    148 larva L3 puffstage 1-2    1 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    1 white prepupae 12hr    109 white prepupae 24hr    2 pupae 2d postWPP    3 pupae 3d postWPP    1 pupae 4d postWPP    4 adult male 01day    5 adult male 05day    0 adult male 30day    0 adult female 01day    6 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    6 embryo 16-18hr  (43) embryo 18-20hr  (131) embryo 20-22hr  (41) embryo 22-24hr    23 larva L1    6 larva L2    24 larva L3 12hr old  (148) larva L3 puffstage 1-2    1 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    1 white prepupae 12hr  (109) white prepupae 24hr    2 pupae 2d postWPP    3 pupae 3d postWPP    1 pupae 4d postWPP    4 adult male 01day    5 adult male 05day    0 adult male 30day    0 adult female 01day    6 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    6 embryo 16-18hr    43 embryo 18-20hr  131 embryo 20-22hr    41 embryo 22-24hr    23 larva L1    6 larva L2    24 larva L3 12hr old  (148) larva L3 puffstage 1-2    1 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    1 white prepupae 12hr  109 white prepupae 24hr    2 pupae 2d postWPP    3 pupae 3d postWPP    1 pupae 4d postWPP    4 adult male 01day    5 adult male 05day    0 adult male 30day    0 adult female 01day    6 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    6 embryo 16-18hr    43 embryo 18-20hr    131 embryo 20-22hr    41 embryo 22-24hr    23 larva L1    6 larva L2    24 larva L3 12hr old    148 larva L3 puffstage 1-2    1 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    1 white prepupae 12hr    109 white prepupae 24hr    2 pupae 2d postWPP    3 pupae 3d postWPP    1 pupae 4d postWPP    4 adult male 01day    5 adult male 05day    0 adult male 30day    0 adult female 01day    6 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    0 cold shock, 4-day adult    0 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    14 Cadmium 50 mM 12 hrs, larvae L3    1 Cadmium 50 mM 48 hrs, 4-day adult    12 Cadmium 100 mM 48 hrs, 4-day adult    1 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    0 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    0 Ethanol 2.5% 3 hrs, larvae L3    0 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    14 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    2 Caffeine 25 mg/ml 48 hrs, 4-day adult    0 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    1 Rotenone 2 μg 12 hrs, larvae L3    6 Rotenone 8 μg 12 hrs, larvae L3    14 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    0 cold shock, 4-day adult    0 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    14 Cadmium 50 mM 12 hrs, larvae L3    1 Cadmium 50 mM 48 hrs, 4-day adult    12 Cadmium 100 mM 48 hrs, 4-day adult    1 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    0 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    0 Ethanol 2.5% 3 hrs, larvae L3    0 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    14 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    2 Caffeine 25 mg/ml 48 hrs, 4-day adult    0 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    1 Rotenone 2 μg 12 hrs, larvae L3    6 Rotenone 8 μg 12 hrs, larvae L3    14 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    0 cold shock, 4-day adult    0 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    14 Cadmium 50 mM 12 hrs, larvae L3    1 Cadmium 50 mM 48 hrs, 4-day adult    12 Cadmium 100 mM 48 hrs, 4-day adult    1 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    0 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    0 Ethanol 2.5% 3 hrs, larvae L3    0 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    14 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    2 Caffeine 25 mg/ml 48 hrs, 4-day adult    0 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    1 Rotenone 2 μg 12 hrs, larvae L3    6 Rotenone 8 μg 12 hrs, larvae L3    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    0 cold shock, 4-day adult    0 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    14 Cadmium 50 mM 12 hrs, larvae L3    1 Cadmium 50 mM 48 hrs, 4-day adult    12 Cadmium 100 mM 48 hrs, 4-day adult    1 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    0 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    0 Ethanol 2.5% 3 hrs, larvae L3    0 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    14 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    2 Caffeine 25 mg/ml 48 hrs, 4-day adult    0 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    1 Rotenone 2 μg 12 hrs, larvae L3    6 Rotenone 8 μg 12 hrs, larvae L3    14 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    0 cold shock, 4-day adult    0 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    14 Cadmium 50 mM 12 hrs, larvae L3    1 Cadmium 50 mM 48 hrs, 4-day adult    12 Cadmium 100 mM 48 hrs, 4-day adult    1 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    0 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    0 Ethanol 2.5% 3 hrs, larvae L3    0 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    14 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    2 Caffeine 25 mg/ml 48 hrs, 4-day adult    0 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    1 Rotenone 2 μg 12 hrs, larvae L3    6 Rotenone 8 μg 12 hrs, larvae L3    14 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    0 cold shock, 4-day adult    0 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    14 Cadmium 50 mM 12 hrs, larvae L3    1 Cadmium 50 mM 48 hrs, 4-day adult    12 Cadmium 100 mM 48 hrs, 4-day adult    1 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    0 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    0 Ethanol 2.5% 3 hrs, larvae L3    0 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    14 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    2 Caffeine 25 mg/ml 48 hrs, 4-day adult    0 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    1 Rotenone 2 μg 12 hrs, larvae L3    6 Rotenone 8 μg 12 hrs, larvae L3    14 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    0 cold shock, 4-day adult    0 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    14 Cadmium 50 mM 12 hrs, larvae L3    1 Cadmium 50 mM 48 hrs, 4-day adult    12 Cadmium 100 mM 48 hrs, 4-day adult    1 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    0 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    0 Ethanol 2.5% 3 hrs, larvae L3    0 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    14 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    2 Caffeine 25 mg/ml 48 hrs, 4-day adult    0 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    1 Rotenone 2 μg 12 hrs, larvae L3    6 Rotenone 8 μg 12 hrs, larvae L3    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    0 cold shock, 4-day adult    0 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    14 Cadmium 50 mM 12 hrs, larvae L3    1 Cadmium 50 mM 48 hrs, 4-day adult    12 Cadmium 100 mM 48 hrs, 4-day adult    1 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    0 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    0 Ethanol 2.5% 3 hrs, larvae L3    0 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    14 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    2 Caffeine 25 mg/ml 48 hrs, 4-day adult    0 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    1 Rotenone 2 μg 12 hrs, larvae L3    6 Rotenone 8 μg 12 hrs, larvae L3    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_12 mE1_20_mRNA_expression_cluster_12
External Data & Images
Linkouts	BDGP expression data • RH14104 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0004783 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG2360-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for Ccp84Aa Stages(s) 1-3 Stages(s) 4-6 Stages(s) 7-8 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 Ccp84AaGD17628 Phenotype manifest in Allele
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of Ccp84Aa Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 1 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Ccp84Aa Class Mutagen Stocks Known lesion Ccp84AaGD17628 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes
Aneuploid Aberrations
Disrupted in	Df(3R)Antp-RX2 (Kaufman et al., 1990) Df(3R)MAP2 (Kaufman et al., 1990) Df(3R)MAP8 (Kaufman et al., 1990) Df(3R)WIN3 (Kaufman et al., 1990)
Not disrupted in	Df(3R)MAP13 (Kaufman et al., 1990) Df(3R)MAP14 (Kaufman et al., 1990) Df(3R)pb-X2 (Kaufman et al., 1990) Df(3R)SCB-XL2 (Kaufman et al., 1990) Df(3R)WIN1 (Kaufman et al., 1990)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD17628} NA
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 2 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function
CV term Evidence References
structural constituent of chitin-based cuticle inferred from sequence or structural similarity with InterPro:IPR000618 (Willis, 2007.1.3) inferred from sequence or structural similarity with Pfam:PF00379 (Willis, 2007.1.3) structural constituent of chitin-based larval cuticle inferred from sequence or structural similarity with UniProtKB:P80682 (FlyBase, 1992-)
Biological Process ( 0 terms)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Ccp84Aa allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 66023 DroID - A comprehensive database of gene and protein interactions. • FBgn0004783 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 40825
Orthologs
OrthoDB Orthologs (251) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6Q2F0S Dipteran inclusive ortholog search EOG6V6ZQH Insect inclusive ortholog search EOG6N5TRM, EOG6RN949 Arthropod inclusive ortholog search EOG6MW6MV Metazoa inclusive ortholog search EOG60GRHF
Orthologs in Drosophila Species (EOG6Q2F0S)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\Mst84Db     Drosophila melanogaster fruit fly  Dmel\Ccp84Aa     Drosophila melanogaster fruit fly  Dmel\CG43348     Drosophila melanogaster fruit fly  Dmel\CG15282     Drosophila melanogaster fruit fly  Dmel\Mst87F     Drosophila melanogaster fruit fly  Dmel\CG14742     Drosophila melanogaster fruit fly  Dmel\sls     Drosophila simulans   Dsim\GD13414   Y Drosophila simulans   Dsim\GD13413   Y Drosophila sechellia   Dsec\GM14142   Y Drosophila erecta   Dere\GG14535   Y Drosophila yakuba   Dyak\GE20888   Y Drosophila ananassae   Dana\GF24936   Y Drosophila pseudoobscura pseudoobscura   Dpse\GA15129   Y Drosophila persimilis   Dper\GL24634   Y Drosophila willistoni   Dwil\GK12605   Y Drosophila virilis   Dvir\GJ13444   Y Drosophila mojavensis   Dmoj\GI12167   Y Drosophila grimshawi   Dgri\GH16493   Y
Orthologs in non-Drosophila Dipterans (EOG6V6ZQH)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL005324 Y Anopheles gambiae Malaria mosquito  Agam\AGAP010022 Y Anopheles gambiae Malaria mosquito  Agam\AGAP007478 Y Anopheles gambiae Malaria mosquito  Agam\CPR5 Y Anopheles gambiae Malaria mosquito  Agam\AGAP013099 Y Anopheles gambiae Malaria mosquito  Agam\AGAP011620 Y Anopheles gambiae Malaria mosquito  Agam\AGAP005376 Y Anopheles gambiae Malaria mosquito  Agam\CPR119 Y Anopheles gambiae Malaria mosquito  Agam\CPR121 Y Anopheles gambiae Malaria mosquito  Agam\AGAP010597 Y Anopheles gambiae Malaria mosquito  Agam\AGAP003486 Y Anopheles gambiae Malaria mosquito  Agam\AGAP009286 Y Anopheles gambiae Malaria mosquito  Agam\AGAP005156 Y Anopheles gambiae Malaria mosquito  Agam\AGAP008567 Y Anopheles gambiae Malaria mosquito  Agam\AGAP000437 Y Anopheles gambiae Malaria mosquito  Agam\CPR2 Y Anopheles gambiae Malaria mosquito  Agam\AGAP005264 Y Anopheles gambiae Malaria mosquito  Agam\AGAP013530 Y Anopheles gambiae Malaria mosquito  Agam\CPR6 Y Anopheles gambiae Malaria mosquito  Agam\Ccp84Ab Y Anopheles gambiae Malaria mosquito  Agam\CPR120 Y Anopheles gambiae Malaria mosquito  Agam\CPR2 Y Anopheles gambiae Malaria mosquito  Agam\CPR117 Y Anopheles gambiae Malaria mosquito  Agam\CPR1 Y Anopheles gambiae Malaria mosquito  Agam\CPR115 Y Anopheles gambiae Malaria mosquito  Agam\CPR119 Y Anopheles gambiae Malaria mosquito  Agam\AGAP005266 Y Anopheles gambiae Malaria mosquito  Agam\AGAP007563 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ011765 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ012427 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ007029 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ014141 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ012200 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ012414 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ012435 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ018253 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ004287 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ008315 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ012392 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ012396 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ014770 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ012409 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ018642 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ012400 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ012385 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ002800 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ012447 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ012451 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ013523 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ001517 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ012439 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ012377 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ002801 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ008950 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ010358 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ005383 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ012382 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ012443 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ005040 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ012405 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ004290 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ012431 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ012416 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ006894 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ015243 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ018641 Y
Orthologs in non-Dipteran Insects (EOG6N5TRM, EOG6RN949)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB43664 Y Apis mellifera Western honey bee  Amel\GB50933 Y Apis mellifera Western honey bee  Amel\GB55599 Y Apis mellifera Western honey bee  Amel\GB43665 Y Apis mellifera Western honey bee  Amel\GB48278 Y Apis mellifera Western honey bee  Amel\Ubx Y Apis mellifera Western honey bee  Amel\GB40241 Y Apis mellifera Western honey bee  Amel\GB47977 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG016092 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH10867 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH13007 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH19675 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH10894 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH23709 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH24406 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH17353 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH23780 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH26795 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH24163 Y Atta cephalotes Leafcutter ant  Acep\ACEP15051 Y Atta cephalotes Leafcutter ant  Acep\ACEP15062 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO12477 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO11251 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO14728 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO12426 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO25481 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO26206 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO25479 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO11962 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO12110 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO26673 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO24414 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO25577 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO24382 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO11427 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO26262 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO25478 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL24942 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL27059 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL10529 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL24599 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL12192 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL24103 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL12151 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL24059 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL10864 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL17676 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL27388 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL27658 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL25577 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL12195 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL10941 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL27778 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL27303 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL11273 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL25829 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL10702 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL28179 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL27651 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL12004 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL25821 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL26058 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL11096 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL28346 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL27506 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL11530 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL10871 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL15472 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL24193 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL11069 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL26618 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL11306 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL11769 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL28330 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL25121 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL24060 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL11969 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL11137 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL24540 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL12173 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL27637 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL26622 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL27688 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL27879 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL27058 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL10751 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL24964 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL25126 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL15482 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL26924 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL19327 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL27797 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL21942 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL20460 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL11707 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL10725 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL27851 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL27340 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL26160 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL26367 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL27799 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL20777 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL24337 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL27837 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL11221 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL10870 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL27400 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL27270 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL10892 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL19318 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL10510 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL26449 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL10762 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL28475 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL27427 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL19326 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL26509 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL24920 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL26404 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL25568 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL27832 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL24605 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL27560 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL24983 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL26923 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL11242 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL11808 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL27897 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL28183 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL28111 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL27636 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL10789 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL11416 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL26400 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL22447 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL26616 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL26257 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL24087 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL24305 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL11603 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL11075 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL26615 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL26528 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL26056 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL11677 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL27781 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL24511 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL11810 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL25965 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL28255 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL11963 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL26926 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL27608 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL26837 Y Linepithema humile Argentine ant  Lhum\LH15999 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB15735 Y Solenopsis invicta Red fire ant  Sinv\SINV13501 Y Acyrthosiphon pisum Pea aphid  Apim\ACYPI072205 Y Bombyx mori Silkmoth  Bmor\BGIBMGA000622 Y Pediculus humanus Human body louse  Phum\PHUM541090 Y Tribolium castaneum Red flour beetle  Tcas\TC030701 Y
Orthologs in non-Insect Arthropods (EOG6MW6MV)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_305290 Y Ixodes scapularis Deer tick  Isca\ISCW017764 Y
Orthologs in non-Arthropod Metazoa (EOG60GRHF)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\F54E2.3 Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_022021gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_023142gn Y
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (4) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila sechellia Dsec\GM10912 Drosophila erecta Dere\GG13642 Drosophila yakuba Dyak\GE24881 Drosophila ananassae Dana\GF17799
Stocks & Reagents
Stocks Listed in FlyBase ( 2 )
VDRC	v49694 w1118; P{GD17628}v49694 v49693 w1118; P{GD17628}v49693/TM3
Genomic Clones ( 2 )
	BACR19D23 BACR19I14 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 3 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RH13984 RH14104
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones	EK198959
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0004783 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40825
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: Ccp84Aa CG2360 (Li, 1999.11)
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_141426 RefSeq (Proteins) • NP_649683 DDBJ / EMBL / GenBank • AAD19803 AAF54090 AE001572 BI609334 Entrez Gene - A searchable database of RefSeq genes. • 40825 UniProtKB/TrEMBL • Q9V3L8
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Insect cuticle protein (IPR000618) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • RH14104
Linkouts
	BioGRID - A database of protein and genetic interactions • 66023 DroID - A comprehensive database of gene and protein interactions. • FBgn0004783 DRSC - Results from RNAi screens. • FBgn0004783 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0004783 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG2360-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0004783 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40825 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 40825 modMine - Data generated by the modENCODE project. • FBgn0004783
Synonyms & Secondary IDs ( 8 )
Reported As
Symbol Synonym	BG:DS00004.1   cc8   Ccp (Negre and Ruiz, 2007) Ccp84Aa (Willis, 2007.1.3, Zraly et al., 2006, Reiter et al., 2007, Karouzou et al., 2007, Karouzou et al., 2007, Cornman and Willis, 2008, Cornman, 2009, Negre et al., 2005, Blanco et al., 2008) CG2360 (Kalajdzic et al., 2012) DmelCcp84Aa (Karouzou et al., 2007) unnamed (Kaufman et al., 1990)
Name Synonym	Ccp84Aa   cuticle cluster 8
Secondary FlyBase IDs
References ( 27 )
Generate a list of	All references relating to this gene ( 27 )
List References by type	Research paper  ( 7 ) Supplementary material  ( 7 ) Review  ( 3 ) Personal communication to FlyBase  ( 3 ) Abstract  ( 1 ) FlyBase analysis  ( 1 ) Curated genome annotation  ( 3 ) Website  ( 1 )
Recent research papers ( 1 )
	Kalajdzic et al., 2012, PLoS ONE 7(6): e40296 Use of mutagenesis, genetic mapping and next generation transcriptomics to investigate insecticide resistance mechanisms. [FBrf0218826] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2011 Show reviews ...