A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Gene Dmel\hep

General Information
SymbolDmel\hepSpeciesD. melanogaster
NamehemipterousAnnotation symbolCG4353
Feature typeprotein_coding_geneFlyBase IDFBgn0010303
Gene Model StatusCurrent Stock availability 19 publicly available
Also Known AsJNKK, HEP/MKK7, MKK7, DJNKK, hp
Genomic Location
Chromosome (arm)XRecombination map1-
Cytogenetic map11D10-11D10Sequence locationX:12,973,240..12,984,466 [-]

Genomic Maps

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Automatically generated summary

See sections below for more information
The gene hemipterous is referred to in FlyBase by the symbol Dmel\hep (CG4353, FBgn0010303). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: protein binding; protein kinase activity. There is experimental evidence for 26 unique biological process terms, many of which group under: anatomical structure development; cellular component organization or biogenesis; biological regulation; cellular process involved in reproduction; multicellular organismal reproductive process; cellular response to inorganic substance; chemical homeostasis; post-embryonic organ morphogenesis; response to stress; response to chemical stimulus. 47 alleles are reported. The phenotypes of these alleles are annotated with: organ system subdivision; adult segment; organ system; imaginal precursor; external compound sense organ; adult mesothoracic segment; thoracic segment; non-connected developing system; nervous system; larval thorax. It has 3 annotated transcripts and 3 annotated polypeptides. Protein features are: Protein kinase, ATP binding site; Protein kinase, catalytic domain; Protein kinase-like domain; Serine/threonine-protein kinase, active site; Serine/threonine-protein kinase, catalytic domain; Serine/threonine-protein kinase-like domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed at stages throughout embryogenesis, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at moderate levels in the following post-embryonic organs or tissues: adult eye, larval/adult central nervous system, adult crop, larval midgut, larval hindgut, larval Malpighian tubules, adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, larval carcass. Gene sequence location is X:12973240..12984466.

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Description
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FB2011_10
Transgenic Constructs
Alleles
FB2012_01
Sequence features
References
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
11D10-11D10  
Limits computationally determined from genome sequence between P{EP}EP1461 and P{EP}CG1640EP1626  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
11D1-11D4  
(determined by in situ hybridisation) 11D (determined by in situ hybridisation)  
11D-11D  
(determined by in situ hybridisation)  
11D1-11D4  
(determined by in situ hybridisation)  
11D-11D  
11D1-11D2  
11D1-11D2  
(determined by in situ hybridisation)  
11B12-13F  
Determined by complementation mapping, aberrations not specified.  
Experimentally Determined Recombination Data
Location
1-
 
Left of (cM)
Right of (cM)
Notes
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Please see the GBrowse view of Dmel\hep for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0073749 FBtr0073748 FBtr0073747 FBtr0073720 FBpp0073580 FBpp0073579 FBpp0073578 FBpp0073551 FBti0050925 FBti0071334 FBti0038228 FBti0041076 FBti0071436 FBti0015538 FBti0015676 FBti0013159 FBti0071274
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0073747
  4908
  1178
FBtr0073749
  2986
  580
FBtr0073748
  2724
  492
Additional Transcript Data & Comments
Reported size (kB)
6.0 (northern blot)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
hep-PA  
FBpp0073578  
125.1  
1178  
10.05  
hep-PB  
FBpp0073580  
61.9  
580  
10.22  
hep-PC  
FBpp0073579  
53.1  
492  
9.19  
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
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DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
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Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
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Crossreferences
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hideTranscript Expression
northern blot
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
hep transcripts are detected throughout development on northern blots. In situ hybridization shows that they are homogeneously distributed throughout the embryo.
Marker for
Subcellular Localization
CV Term
Notes
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Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
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or
Untitled Document detailed view hep-RB hep-RC hep-RA lic-RA
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
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modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
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A cluster of genes with similar mRNA expression dynamics across development.
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Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
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hide Summary of Allele Phenotypes
Lethality
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
adult thorax & macrochaeta, with Scer\GAL4pnr-MD237
axon & dorsal cluster neuron
axon & dorsal cluster neuron, with Scer\GAL4ato.3.6
cuticle & abdomen
cuticle & abdomen | germ-line clone
cuticle & thorax
cuticle & thorax | germ-line clone
dorsal mesothoracic disc & cytoskeleton
embryonic leading edge cell & actin filament
embryonic leading edge cell & filopodium
peripodial epithelium & dorsal mesothoracic disc & prepupa
peripodial stalk & dorsal mesothoracic disc & prepupa
ventral adult lateral neuron & axon, with Scer\GAL4P2.4.Pdf
hide Classical Alleles ( 29 )
For All Classical Alleles Show

Allele of hepClassMutagenStocksKnown lesion
hepc029502 --
hepG01072 --
hepf029411 --
hepG02081 --
hepGG017251 --
hepr75loss of function allele, hypomorphic allele - genetic evidence1 Yes
hep1hypomorphic allele - genetic evidence0 Yes
hep699
0 --
hep75
0 --
hep7P1
0 --
hepCA0 Yes
hepG03900 --
hepG240 Yes
hepGG01622
0 --
hepH490 Yes
hepH60 Yes
hepH810 Yes
hepM560 Yes
hepr390 Yes
hepr450 Yes
hepr510 Yes
heprh19
0 --
heprh1
0 --
heprh31
0 --
heprh8
0 --
heprh99
0 --
hepunspecified
0 --
hepv39
0 --
hepv75
0 --
hide Alleles Carried on Transgenic Constructs ( 18 )
For All Alleles Carried on Transgenic Constructs Show

Allele of hepClassMutagenStocksKnown lesion
hepGD14613 Yes
hepAct.Scer\UAS2 Yes
hepCA.Scer\UAS2 Yes
hepScer\UAS.cBa2 Yes
hepGL000891 Yes
hepJF031371 Yes
hepdsRNA.cBa0 Yes
hepdsRNA.cCa0 Yes
hepdsRNA.cIa0 Yes
hepdsRNA.cSa0 Yes
hepdsRNA.Scer\UAS0 Yes
hepGD87260 Yes
hephs.PG0 Yes
hepKK1162950 Yes
hepNIG.2190R0 Yes
hepNIG.4153R0 Yes
hepScer\UAS.cGa0 Yes
hepUbi-p63E.PG0 Yes
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Disrupted in
Duplicated in
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Transgenic Constructs
Type of construct
Name
Expression data
heat-shock construct
characterization construct
Insertions
Type of insertions
Name
Expression data
insertion of enhancer trap
insertion of mobile activating element
hide Gene Ontology: Function, Process & Cellular Component ( 40 unique terms )
hide Terms Based on Experimental Evidence ( 29 terms )
Molecular Function
CV term
References
inferred from physical interaction with Cka
inferred from direct assay
Biological Process
CV term
References
inferred from mutant phenotype
inferred from genetic interaction with Pvr
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
Cellular Component
CV term
References
inferred from direct assay
hide Terms Based on Predictions or Assertions ( 13 terms )
Molecular Function
CV term
References
inferred from sequence or structural similarity
traceable author statement
inferred from sequence or structural similarity with NCBI_gi:4826946
non-traceable author statement
traceable author statement
Biological Process
CV term
References
non-traceable author statement
non-traceable author statement
non-traceable author statement
traceable author statement
Cellular Component ( 0 terms)
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Protein-protein
Interacting group
Assay
References
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Interacts with
Please look at the allele data for full details of the genetic interactions
hep allele
Gene
References
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Linkouts
BioGRID - A database of protein and genetic interactions
DPiM - DPiM, Drosophila Protein interaction Map
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs
Linkouts
InParanoid A subset of ortholog calls from InParanoid.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
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hide Stocks Listed in FlyBase ( 19 )
Bloomington
Harvard
Kyoto
VDRC
hide Genomic Clones ( 1 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 58 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
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Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
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Source for database identity of
Source for database merge of
Source for merge of: hep CG2190
Source for merge of: hep l(1)G0107 l(1)G0208
Additional comments
Annotations CG4353 and CG2190 merged as CG4353 in release 3 of the genome annotation.
hide Other Comments
dsRNA made from templates generated with primers directed against this gene tested in RNAi screen for effects on Kc167 and S2R+ cell morphology.
dsRNA made from templates generated with primers directed against this gene is tested in an RNAi screen for effects on actin-based lamella formation.
hep is necessary for actin-cable assembly and actin-based cell process formation in leading edge cells during dorsal closure.
Shows particularly robust cycling of transcription in adult heads, as assessed by expression analysis using high density oligonucleotide arrays with probe generated during three 12-point time course experiments over the course of 6 days.
hep is essential for the correct morphogenesis of the dorsal appendage and micropyle.
hep controls puc expression but not dpp expression in imaginal discs.
hep and the JNK pathway are required for correct morphogenesis of the imaginal discs.
Candidate gene for posterior lobe area quantitative trait locus.
Show no or weak ommatidial precursor polarity phenotypes in imaginal tissues.
The JNK pathway (which includes hep) is required for thorax closure during metamorphosis.
hep is required for normal dpp expression in the leading edge during dorsal closure. puc is both a repressor and a target of hep function in the leading edge. The combined and antagonistic functions of hep and puc maintain appropriate levels of puc and dpp activities in migrating epithelia during dorsal closure. These results indicate a leading edge cell identity and dorsal closure depend on a balance between bsk activation and puc repression.
The JNK pathway is conserved between vertebrates and Drosophila and is involved in controlling cell morphogenesis in Drosophila.
Data suggests that hep functions in a novel MAPK pathway controlling puc expression and morphogenetic activity of the dorsal epidermis.
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Linkouts
BioGRID - A database of protein and genetic interactions
DPiM - DPiM, Drosophila Protein interaction Map
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
FlyReactome - A curated knowledgebase of Drosophila melanogaster pathways
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InParanoid A subset of ortholog calls from InParanoid.
Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Synonyms & Secondary IDs ( 27 )
Reported As
Symbol Synonym
l(1)7P1
 
Name Synonym
JNK-kinase
Mitogen-activated protein kinase kinase 7
Secondary FlyBase IDs
  • FBgn0013490
  • FBgn0029076
  • FBgn0030446
  • FBgn0040188
hide References ( 268 )
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hide Recent research papers ( 22 )
Hong et al., 2011, J. Ethnopharmacol. 134(3): 1028--1032
Neuroprotective effect of SuHeXiang Wan in Drosophila models of Alzheimer's disease. [FBrf0213403]
Jezowska et al., 2011, Dev. Biol. 360(1): 143--159
A dual function of Drosophila capping protein on DE-cadherin maintains epithelial integrity and prevents JNK-mediated apoptosis. [FBrf0216680]
Jiang et al., 2011, Cell Stem Cell 8(1): 84--95
EGFR/Ras/MAPK Signaling Mediates Adult Midgut Epithelial Homeostasis and Regeneration in Drosophila. [FBrf0212694]
Lee et al., 2011, Mol. Cells 31(4): 337--342
The effects of hempseed meal intake and linoleic acid on Drosophila models of neurodegenerative diseases and hypercholesterolemia. [FBrf0213599]
Sekine et al., 2011, J. Cell Sci. 124(17): 3006--3016
p38 MAPKs regulate the expression of genes in the dopamine synthesis pathway through phosphorylation of NR4A nuclear receptors. [FBrf0215011]
Bergantiños et al., 2010, Development 137(7): 1169--1179
Cell death-induced regeneration in wing imaginal discs requires JNK signalling. [FBrf0210204]
Blanco et al., 2010, BMC Dev. Biol. 10: 94
Gene expression following induction of regeneration in Drosophila wing imaginal discs. Expression profile of regenerating wing discs. [FBrf0211812]
Cobreros-Reguera et al., 2010, EMBO Rep. 11(12): 943--949
The Ste20 kinase misshapen is essential for the invasive behaviour of ovarian epithelial cells in Drosophila. [FBrf0212408]
Djiane and Mlodzik, 2010, PLoS ONE 5(6): e11228
The Drosophila GIPC homologue can modulate myosin based processes and planar cell polarity but is not essential for development. [FBrf0211141]
Gettings et al., 2010, PLoS Biol. 8(6): e1000390
JNK Signalling Controls Remodelling of the Segment Boundary through Cell Reprogramming during Drosophila Morphogenesis. [FBrf0211014]
Kim et al., 2010, BMC Cell Biol. 11: 9
A genetic screen for modifiers of Drosophila caspase Dcp-1 reveals caspase involvement in autophagy and novel caspase-related genes. [FBrf0209948]
Kwon et al., 2010, Biochem. Biophys. Res. Commun. 393(4): 656--661
Nonmuscle myosin II localization is regulated by JNK during Drosophila larval wound healing. [FBrf0210297]
Lee et al., 2010, Science 327(5970): 1223--1228
Sestrin as a feedback inhibitor of TOR that prevents age-related pathologies. [FBrf0210161]
Lennox and Stronach, 2010, Dev. Dyn. 239(2): 651--664
POSH misexpression induces caspase-dependent cell death in Drosophila. [FBrf0209862]
Lesch et al., 2010, Genetics 186(3): 943--957
A Targeted UAS-RNAi Screen in Drosophila Larvae Identifies Wound Closure Genes Regulating Distinct Cellular Processes. [FBrf0212282]
Neisch et al., 2010, J. Cell Biol. 189(2): 311--323
Rho1 regulates apoptosis via activation of the JNK signaling pathway at the plasma membrane. [FBrf0210554]
Oliva and Sierralta, 2010, Dev. Biol. 344(2): 911--921
Regulation of axonal development by the nuclear protein hindsight (pebbled) in the Drosophila visual system. [FBrf0211428]
Portela et al., 2010, Dev. Cell 19(4): 562--573
Drosophila SPARC Is a Self-Protective Signal Expressed by Loser Cells during Cell Competition. [FBrf0212084]
Rallis et al., 2010, Dev. Biol. 339(1): 65--77
Signal strength and signal duration define two distinct aspects of JNK-regulated axon stability. [FBrf0209975]
Rhiner et al., 2010, Dev. Cell 18(6): 985--998
Flower forms an extracellular code that reveals the fitness of a cell to its neighbors in Drosophila. [FBrf0211273]
Rousset et al., 2010, Development 137(13): 2177--2186
The Drosophila serine protease homologue Scarface regulates JNK signalling in a negative-feedback loop during epithelial morphogenesis. [FBrf0211045]
Umehara et al., 2010, Molec. Cell. Biochem. 342(1-2): 223--232
Over-expression of transglutaminase in the Drosophila eye imaginal disc induces a rough eye phenotype. [FBrf0211642]
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All reviews listed in FlyBase were published before 2010