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Gene Dmel\l(3)02640

General Information
Symbol	Dmel\l(3)02640	Species	D. melanogaster
Name	lethal (3) 02640	Annotation symbol	CG9165
Feature type	protein_coding_gene	FlyBase ID	FBgn0010786
Gene Model Status	Current	Stock availability	9 publicly available
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	61F6-61F7	Sequence location	3L:1,334,877..1,339,407 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene lethal (3) 02640 is referred to in FlyBase by the symbol Dmel\l(3)02640 (CG9165, FBgn0010786). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: hydroxymethylbilane synthase activity. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process: peptidyl-pyrromethane cofactor linkage; tetrapyrrole biosynthetic process. 19 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Porphobilinogen deaminase, C-terminal; Porphobilinogen deaminase, N-terminal; Porphobilinogen deaminase, dipyrromethane cofactor binding site; Tetrapyrrole biosynthesis, hydroxymethylbilane synthase. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 and 12-24 hour embryonic stages, during early larval stages, during late pupal stages, in stages of adults of both sexes. Summary of FlyAtlas Anatomical Expression Data: Many larval and adult organs/tissues expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: adult heart, adult fat body, adult ovary, adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, adult Malpighian tubules, larval fat body, adult salivary gland, larval trachea, adult spermathecae, adult testis, larval carcass. Comments on Affy2 ProbeSet: ProbeSet 1635542_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of l(3)02640. Gene sequence location is 3L:1334877..1339407.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2011_10
FB2012_01	Sequence features HFA08632 BKN20076
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 61F6-61F7   Limits computationally determined from genome sequence between P{PZ}l(3)0596705967 and P{PZ}l(3)0264002640
Experimentally Determined Cytological Location
Cytogenetic map Notes References 61F6-61F7   (determined by in situ hybridisation)   (Spradling et al., 1999) 61F5-61F7   61F6--7 61F7--8   (BDGP Project Members, 1994-1999)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\l(3)02640 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	DGC clone appears problematic (GH01718): incomplete CDS.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) l(3)02640-RA FBtr0072679  NM_138259   2560   652
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein l(3)02640-PA   FBpp0072572   68.9   652   6.88     NP_612103   AAF47484
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Tetrapyrrole biosynthesis, hydroxymethylbilane synthase (IPR000860) Porphobilinogen deaminase, N-terminal (IPR022417) Porphobilinogen deaminase, C-terminal (IPR022418) Porphobilinogen deaminase, dipyrromethane cofactor binding site (IPR022419)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA567284   AA697492   AA698501   AE014296 AAF47484   AF006650   AI062495   AI106749   AI133967   AI135205   AI257945   AI292796   AI296587   AI387001   AI387899   AI404738   AI518859   AQ254886   AW940061   AX201686   AY069034 AAL39179   BE975872   BF488955   BG638861   BI162926   BI173839   BI213647   BI216923   BI227820   BI232275   BI234765   BI237935   BI356564   BI356605   BI357386   BI367816   BI370393   BI374349   BI483801   BI567800   BI579635   BI588242   BI589414   BI592756   BI604595   BI605075   BI606128   BI608567   BI610560   BI613191   BI615260   BI615852   BI618528   BI621366   BI622645   BI623593   BI625132   BI625294   BI634931   BI640082   BP542355   BT001420 AAN71175   BT023907   BT050461   CK659574   CL528110   CO292569   CO294530   CO296519   CO321238   CO321725   CZ473619   CZ476233   CZ477161   CZ477782   EC063868   EC079208   EC200349   EC201008   EC201724   EC224097   EV588531   EV589049   EV590882   EV591811   G00701   GH758254   GH758587   GH759612   GH774200   GH777023   GH780196   GH781365   GH781703   GH781826   GH781986   GH781994   GH782349   GH785556   GH788045   GH790453   GH792403   GH792959   GH793192   GH794546   GH796286   GH798369   GH799120   GH803797   GH805858   GH811087   GH811438   GH813568   GH814262   GH818588   GH819861   GH820725   GH820874   GH821937   GH822367   GH822919   GH824253   GH824757   GH832465   GH834302   GH838570   GH838934   GH839625   GH840840   GH843129   GH845762   GH847036   GH849821   GH851104   GH856629   GH857891   GH859982   GH860211   GH861016   GH863189   GH863577   GH866333   GH868113   GH868846   GH869238   GH870776   GH873002   GH873219   GH876268   GH878494   GH882203   GH884751   GH885194   GH891027   GH896685   GH901989   GH903217   GH910501   GH911195   GH911980   GH914690   GH915490   GH919559   GH921737   GH923805   GH924092   GH924487   GH925790   GH926566   GH926691   GH926764   GH929066   GH933689   GH934714   GH935099   GH936169   GH936785   GH937736   GH938571
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q8IH53 Q8T0V4 Q9W0G4
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0010786    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0010786 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 and 12-24 hour embryonic stages, during early larval stages, during late pupal stages, in stages of adults of both sexes. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0010786 expression level Developmental Stage   Expression Level embryo 00-02hr    7026 embryo 02-04hr    647 embryo 04-06hr    848 embryo 06-08hr    2137 embryo 08-10hr    2382 embryo 10-12hr    3009 embryo 12-14hr    2999 embryo 14-16hr    5578 embryo 16-18hr    3402 embryo 18-20hr    3103 embryo 20-22hr    4096 embryo 22-24hr    3761 larva L1    3733 larva L2    4318 larva L3 12hr old    2697 larva L3 puffstage 1-2    1090 larva L3 puffstage 3-6    1269 larva L3 puffstage 7-9    1444 white prepupae new    1556 white prepupae 12hr    1432 white prepupae 24hr    1717 pupae 2d postWPP    4551 pupae 3d postWPP    5009 pupae 4d postWPP    5391 adult male 01day    4166 adult male 05day    5992 adult male 30day    5557 adult female 01day    5775 adult female 05day    6955 adult female 30day    7029 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (7026) embryo 02-04hr  (647) embryo 04-06hr  (848) embryo 06-08hr  (2137) embryo 08-10hr  (2382) embryo 10-12hr  (3009) embryo 12-14hr  (2999) embryo 14-16hr  (5578) embryo 16-18hr  (3402) embryo 18-20hr  (3103) embryo 20-22hr  (4096) embryo 22-24hr  (3761) larva L1  (3733) larva L2  (4318) larva L3 12hr old  (2697) larva L3 puffstage 1-2  (1090) larva L3 puffstage 3-6  (1269) larva L3 puffstage 7-9  (1444) white prepupae new  (1556) white prepupae 12hr  (1432) white prepupae 24hr  (1717) pupae 2d postWPP  (4551) pupae 3d postWPP  (5009) pupae 4d postWPP  (5391) adult male 01day  (4166) adult male 05day  (5992) adult male 30day  (5557) adult female 01day  (5775) adult female 05day  (6955) adult female 30day  (7029) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (7026) embryo 02-04hr    647 embryo 04-06hr    848 embryo 06-08hr  (2137) embryo 08-10hr  (2382) embryo 10-12hr  (3009) embryo 12-14hr  (2999) embryo 14-16hr  (5578) embryo 16-18hr  (3402) embryo 18-20hr  (3103) embryo 20-22hr  (4096) embryo 22-24hr  (3761) larva L1  (3733) larva L2  (4318) larva L3 12hr old  (2697) larva L3 puffstage 1-2    1090 larva L3 puffstage 3-6    1269 larva L3 puffstage 7-9  1444 white prepupae new  (1556) white prepupae 12hr  1432 white prepupae 24hr  (1717) pupae 2d postWPP  (4551) pupae 3d postWPP  (5009) pupae 4d postWPP  (5391) adult male 01day  (4166) adult male 05day  (5992) adult male 30day  (5557) adult female 01day  (5775) adult female 05day  (6955) adult female 30day  (7029) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    7026 embryo 02-04hr    647 embryo 04-06hr    848 embryo 06-08hr    2137 embryo 08-10hr    2382 embryo 10-12hr    3009 embryo 12-14hr    2999 embryo 14-16hr    5578 embryo 16-18hr    3402 embryo 18-20hr    3103 embryo 20-22hr    4096 embryo 22-24hr    3761 larva L1    3733 larva L2    4318 larva L3 12hr old    2697 larva L3 puffstage 1-2    1090 larva L3 puffstage 3-6    1269 larva L3 puffstage 7-9    1444 white prepupae new    1556 white prepupae 12hr    1432 white prepupae 24hr    1717 pupae 2d postWPP    4551 pupae 3d postWPP    5009 pupae 4d postWPP    5391 adult male 01day    4166 adult male 05day    5992 adult male 30day    5557 adult female 01day    5775 adult female 05day    6955 adult female 30day    7029 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    7026 embryo 02-04hr    647 embryo 04-06hr    848 embryo 06-08hr    2137 embryo 08-10hr    2382 embryo 10-12hr    3009 embryo 12-14hr    2999 embryo 14-16hr    5578 embryo 16-18hr    3402 embryo 18-20hr    3103 embryo 20-22hr    4096 embryo 22-24hr    3761 larva L1    3733 larva L2    4318 larva L3 12hr old    2697 larva L3 puffstage 1-2    1090 larva L3 puffstage 3-6    1269 larva L3 puffstage 7-9    1444 white prepupae new    1556 white prepupae 12hr    1432 white prepupae 24hr    1717 pupae 2d postWPP    4551 pupae 3d postWPP    5009 pupae 4d postWPP    5391 adult male 01day    4166 adult male 05day    5992 adult male 30day    5557 adult female 01day    5775 adult female 05day    6955 adult female 30day    7029 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0010786 expression level Developmental Stage   Expression Level embryo 00-02hr    7026 embryo 02-04hr    647 embryo 04-06hr    848 embryo 06-08hr    2137 embryo 08-10hr    2382 embryo 10-12hr    3009 embryo 12-14hr    2999 embryo 14-16hr    5578 embryo 16-18hr    3402 embryo 18-20hr    3103 embryo 20-22hr    4096 embryo 22-24hr    3761 larva L1    3733 larva L2    4318 larva L3 12hr old    2697 larva L3 puffstage 1-2    1090 larva L3 puffstage 3-6    1269 larva L3 puffstage 7-9    1444 white prepupae new    1556 white prepupae 12hr    1432 white prepupae 24hr    1717 pupae 2d postWPP    4551 pupae 3d postWPP    5009 pupae 4d postWPP    5391 adult male 01day    4166 adult male 05day    5992 adult male 30day    5557 adult female 01day    5775 adult female 05day    6955 adult female 30day    7029 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (7026) embryo 02-04hr  (647) embryo 04-06hr  (848) embryo 06-08hr  (2137) embryo 08-10hr  (2382) embryo 10-12hr  (3009) embryo 12-14hr  (2999) embryo 14-16hr  (5578) embryo 16-18hr  (3402) embryo 18-20hr  (3103) embryo 20-22hr  (4096) embryo 22-24hr  (3761) larva L1  (3733) larva L2  (4318) larva L3 12hr old  (2697) larva L3 puffstage 1-2  (1090) larva L3 puffstage 3-6  (1269) larva L3 puffstage 7-9  (1444) white prepupae new  (1556) white prepupae 12hr  (1432) white prepupae 24hr  (1717) pupae 2d postWPP  (4551) pupae 3d postWPP  (5009) pupae 4d postWPP  (5391) adult male 01day  (4166) adult male 05day  (5992) adult male 30day  (5557) adult female 01day  (5775) adult female 05day  (6955) adult female 30day  (7029) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (7026) embryo 02-04hr    647 embryo 04-06hr    848 embryo 06-08hr  2137 embryo 08-10hr  2382 embryo 10-12hr  (3009) embryo 12-14hr  (2999) embryo 14-16hr  (5578) embryo 16-18hr  (3402) embryo 18-20hr  (3103) embryo 20-22hr  (4096) embryo 22-24hr  (3761) larva L1  (3733) larva L2  (4318) larva L3 12hr old  (2697) larva L3 puffstage 1-2    1090 larva L3 puffstage 3-6    1269 larva L3 puffstage 7-9  1444 white prepupae new  1556 white prepupae 12hr  1432 white prepupae 24hr  1717 pupae 2d postWPP  (4551) pupae 3d postWPP  (5009) pupae 4d postWPP  (5391) adult male 01day  (4166) adult male 05day  (5992) adult male 30day  (5557) adult female 01day  (5775) adult female 05day  (6955) adult female 30day  (7029) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    7026 embryo 02-04hr    647 embryo 04-06hr    848 embryo 06-08hr    2137 embryo 08-10hr    2382 embryo 10-12hr    3009 embryo 12-14hr    2999 embryo 14-16hr    5578 embryo 16-18hr    3402 embryo 18-20hr    3103 embryo 20-22hr    4096 embryo 22-24hr    3761 larva L1    3733 larva L2    4318 larva L3 12hr old    2697 larva L3 puffstage 1-2    1090 larva L3 puffstage 3-6    1269 larva L3 puffstage 7-9    1444 white prepupae new    1556 white prepupae 12hr    1432 white prepupae 24hr    1717 pupae 2d postWPP    4551 pupae 3d postWPP    5009 pupae 4d postWPP    5391 adult male 01day    4166 adult male 05day    5992 adult male 30day    5557 adult female 01day    5775 adult female 05day    6955 adult female 30day    7029 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    7026 embryo 02-04hr    647 embryo 04-06hr    848 embryo 06-08hr    2137 embryo 08-10hr    2382 embryo 10-12hr    3009 embryo 12-14hr    2999 embryo 14-16hr    5578 embryo 16-18hr    3402 embryo 18-20hr    3103 embryo 20-22hr    4096 embryo 22-24hr    3761 larva L1    3733 larva L2    4318 larva L3 12hr old    2697 larva L3 puffstage 1-2    1090 larva L3 puffstage 3-6    1269 larva L3 puffstage 7-9    1444 white prepupae new    1556 white prepupae 12hr    1432 white prepupae 24hr    1717 pupae 2d postWPP    4551 pupae 3d postWPP    5009 pupae 4d postWPP    5391 adult male 01day    4166 adult male 05day    5992 adult male 30day    5557 adult female 01day    5775 adult female 05day    6955 adult female 30day    7029 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0010786    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0010786 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Many larval and adult organs/tissues expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: adult heart, adult fat body, adult ovary, adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, adult Malpighian tubules, larval fat body, adult salivary gland, larval trachea, adult spermathecae, adult testis, larval carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0010786 expression level Tissue   Expression Level Larval Central Nervous System    152.1 Larval Midgut    130.6 Larval Hindgut    249 Larval Malpighian Tubules    49.6 Larval Fat Body    180.2 Larval Salivary Gland    62 Larval Trachea    182.75 Larval Carcass    264.025 Adult Head    247.7 Adult Eye    203.225 Adult Brain    441.8 Adult Thoracic-Abdominal Ganglion    488 Adult Crop    184.6 Adult Midgut    130.9 Adult Hindgut    113.7 Adult Malpighian Tubules    122.5 Adult Fat Body    1021.8 Adult Salivary Gland    287.1 Adult Heart    900.975 Adult VirginFemale Spermatheca    115.4 Adult InseminatedFemale Spermatheca    174.7 Adult Ovary    555.7 Adult Testis    168.3 Adult Male Accessory Gland    41.7 Adult Carcass    1112.3 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    152.1 Larval Midgut    130.6 Larval Hindgut    249 Larval Malpighian Tubules    49.6 Larval Fat Body    180.2 Larval Salivary Gland    62 Larval Trachea    182.75 Larval Carcass    264.025 Adult Head    247.7 Adult Eye    203.225 Adult Brain    441.8 Adult Thoracic-Abdominal Ganglion    488 Adult Crop    184.6 Adult Midgut    130.9 Adult Hindgut    113.7 Adult Malpighian Tubules    122.5 Adult Fat Body  (1021.8) Adult Salivary Gland    287.1 Adult Heart  (900.975) Adult VirginFemale Spermatheca    115.4 Adult InseminatedFemale Spermatheca    174.7 Adult Ovary  (555.7) Adult Testis    168.3 Adult Male Accessory Gland    41.7 Adult Carcass  (1112.3) Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    152.1 Larval Midgut    130.6 Larval Hindgut    249 Larval Malpighian Tubules    49.6 Larval Fat Body    180.2 Larval Salivary Gland    62 Larval Trachea    182.75 Larval Carcass    264.025 Adult Head    247.7 Adult Eye    203.225 Adult Brain    441.8 Adult Thoracic-Abdominal Ganglion    488 Adult Crop    184.6 Adult Midgut    130.9 Adult Hindgut    113.7 Adult Malpighian Tubules    122.5 Adult Fat Body  1021.8 Adult Salivary Gland    287.1 Adult Heart    900.975 Adult VirginFemale Spermatheca    115.4 Adult InseminatedFemale Spermatheca    174.7 Adult Ovary    555.7 Adult Testis    168.3 Adult Male Accessory Gland    41.7 Adult Carcass  (1112.3) Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    152.1 Larval Midgut    130.6 Larval Hindgut    249 Larval Malpighian Tubules    49.6 Larval Fat Body    180.2 Larval Salivary Gland    62 Larval Trachea    182.75 Larval Carcass    264.025 Adult Head    247.7 Adult Eye    203.225 Adult Brain    441.8 Adult Thoracic-Abdominal Ganglion    488 Adult Crop    184.6 Adult Midgut    130.9 Adult Hindgut    113.7 Adult Malpighian Tubules    122.5 Adult Fat Body    1021.8 Adult Salivary Gland    287.1 Adult Heart    900.975 Adult VirginFemale Spermatheca    115.4 Adult InseminatedFemale Spermatheca    174.7 Adult Ovary    555.7 Adult Testis    168.3 Adult Male Accessory Gland    41.7 Adult Carcass    1112.3 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0010786 expression level Tissue   Expression Level Larval Central Nervous System    152.1 Larval Midgut    130.6 Larval Hindgut    249 Larval Malpighian Tubules    49.6 Larval Fat Body    180.2 Larval Salivary Gland    62 Larval Trachea    182.75 Larval Carcass    264.025 Adult Head    247.7 Adult Eye    203.225 Adult Brain    441.8 Adult Thoracic-Abdominal Ganglion    488 Adult Crop    184.6 Adult Midgut    130.9 Adult Hindgut    113.7 Adult Malpighian Tubules    122.5 Adult Fat Body    1021.8 Adult Salivary Gland    287.1 Adult Heart    900.975 Adult VirginFemale Spermatheca    115.4 Adult InseminatedFemale Spermatheca    174.7 Adult Ovary    555.7 Adult Testis    168.3 Adult Male Accessory Gland    41.7 Adult Carcass    1112.3 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    152.1 Larval Midgut    130.6 Larval Hindgut    249 Larval Malpighian Tubules    49.6 Larval Fat Body    180.2 Larval Salivary Gland    62 Larval Trachea    182.75 Larval Carcass    264.025 Adult Head    247.7 Adult Eye    203.225 Adult Brain    441.8 Adult Thoracic-Abdominal Ganglion    488 Adult Crop    184.6 Adult Midgut    130.9 Adult Hindgut    113.7 Adult Malpighian Tubules    122.5 Adult Fat Body  (1021.8) Adult Salivary Gland    287.1 Adult Heart  (900.975) Adult VirginFemale Spermatheca    115.4 Adult InseminatedFemale Spermatheca    174.7 Adult Ovary  555.7 Adult Testis    168.3 Adult Male Accessory Gland    41.7 Adult Carcass  (1112.3) Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    152.1 Larval Midgut    130.6 Larval Hindgut    249 Larval Malpighian Tubules    49.6 Larval Fat Body    180.2 Larval Salivary Gland    62 Larval Trachea    182.75 Larval Carcass    264.025 Adult Head    247.7 Adult Eye    203.225 Adult Brain    441.8 Adult Thoracic-Abdominal Ganglion    488 Adult Crop    184.6 Adult Midgut    130.9 Adult Hindgut    113.7 Adult Malpighian Tubules    122.5 Adult Fat Body  1021.8 Adult Salivary Gland    287.1 Adult Heart    900.975 Adult VirginFemale Spermatheca    115.4 Adult InseminatedFemale Spermatheca    174.7 Adult Ovary    555.7 Adult Testis    168.3 Adult Male Accessory Gland    41.7 Adult Carcass  1112.3 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    152.1 Larval Midgut    130.6 Larval Hindgut    249 Larval Malpighian Tubules    49.6 Larval Fat Body    180.2 Larval Salivary Gland    62 Larval Trachea    182.75 Larval Carcass    264.025 Adult Head    247.7 Adult Eye    203.225 Adult Brain    441.8 Adult Thoracic-Abdominal Ganglion    488 Adult Crop    184.6 Adult Midgut    130.9 Adult Hindgut    113.7 Adult Malpighian Tubules    122.5 Adult Fat Body    1021.8 Adult Salivary Gland    287.1 Adult Heart    900.975 Adult VirginFemale Spermatheca    115.4 Adult InseminatedFemale Spermatheca    174.7 Adult Ovary    555.7 Adult Testis    168.3 Adult Male Accessory Gland    41.7 Adult Carcass    1112.3 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    247.7   NA  Eye    203.225   NA  Brain    441.8   152.1  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    488   NA  Crop    184.6   130.6  Midgut    130.9   249  Hindgut    113.7   49.6  Malpighian Tubules    122.5   180.2  Fat Body    1021.8   62  Salivary Gland    287.1   NA  Heart    900.975   182.75  Trachea    NA   NA  VirginFemale Spermatheca    115.4   NA  InseminatedFemale Spermatheca    174.7   NA  Ovary    555.7   NA  Testis    168.3   NA  Male Accessory Gland    41.7   264.025  Carcass    1112.3 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_26
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0010786 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG5016-RA;CG9165-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal l(3)02640CA07460 lethal (with Df(3L)3C7) l(3)026407E130 lethal (with Df(3L)bab-PG) l(3)026407E130 lethal | recessive l(3)0264002640 l(3)0264003544 l(3)0264004563 l(3)0264004808 l(3)02640j4E3 viable l(3)02640EY08420 Sterility Allele fertile l(3)02640EY08420 Phenotype manifest in Allele
Classical Alleles ( 18 )
For All Classical Alleles Show
Allele of l(3)02640 Class Mutagen Stocks Known lesion l(3)0264002640 P-element activity 1 Yes l(3)026407E130 ethyl methanesulfonate 1 -- l(3)02640CB-5013-3 1 -- l(3)02640d03897 P-element activity 1 -- l(3)02640d11517 P-element activity 1 -- l(3)02640EY08420 P-element activity 1 -- l(3)02640EY23217 P-element activity 1 -- l(3)02640NP0559 1 -- l(3)02640NP7500 1 -- l(3)0264003544 P-element activity 0 -- l(3)0264004563 P-element activity 0 -- l(3)0264004808 P-element activity 0 -- l(3)02640CA07460 P-element activity 0 Yes l(3)02640d08446 P-element activity 0 -- l(3)02640d09783 0 -- l(3)02640d10227 P-element activity 0 -- l(3)02640EP419 P-element activity 0 -- l(3)02640j4E3 P-element activity 0 --
Alleles Carried on Transgenic Constructs ( 1 )
For All Alleles Carried on Transgenic Constructs Show
Allele of l(3)02640 Class Mutagen Stocks Known lesion l(3)02640GD14141 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(3L)Ar14-8 (Spradling et al., 1999) Df(3L)bab-PG (Spradling et al., 1999)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD14141} NA
Insertions
	Type of insertions Name Expression data insertion of enhancer trap P{lacW}l(3)02640j4E3 No P{PZ}l(3)0264002640 No P{PZ}l(3)0264003544 No P{PZ}l(3)0264004563 No P{PZ}l(3)0264004808 No insertion of mobile activating element P{EP}l(3)02640EP419 NA P{EPgy2}l(3)02640EY08420 NA P{EPgy2}l(3)02640EY23217 NA P{GSV1}EP-429EP-429 NA P{XP}l(3)02640d03897 NA P{XP}l(3)02640d08446 NA P{XP}l(3)02640d09783 NA P{XP}l(3)02640d10227 NA P{XP}l(3)02640d11517 NA miscellaneous insertions P{PTT-GA}l(3)02640CA07460 NA P{RS3}l(3)02640CB-5013-3 NA insertion of enhancer trap binary system P{GawB}l(3)02640NP0559 No P{GawB}l(3)02640NP7500 No
Gene Ontology: Function, Process & Cellular Component ( 3 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function
CV term Evidence References
hydroxymethylbilane synthase activity inferred from sequence or structural similarity with UniProtKB:P19356 (FlyBase, 1992-)
Biological Process
CV term Evidence References
peptidyl-pyrromethane cofactor linkage inferred from electronic annotation with InterPro:IPR022419 (FlyBase Curators et al., 2004-) tetrapyrrole biosynthetic process inferred from electronic annotation with InterPro:IPR000860, InterPro:IPR022417, InterPro:IPR022418, InterPro:IPR022419 (FlyBase Curators et al., 2004-)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions l(3)02640 allele Gene References
External Data
Linkouts	DPiM - DPiM, Drosophila Protein interaction Map • FBgn0010786 DroID - A comprehensive database of gene and protein interactions. • FBgn0010786 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 46140
Orthologs
Genome-wide drosophilid orthologs	Dana\GF24457 Dere\GG14785 Dgri\GH15218 Dmoj\GI11928 Dper\GL16182 Dpse\GA21587 Dsec\GM14404 Dsim\GD13613 Dvir\GJ12153 Dwil\GK12668 Dyak\GE21148
Curated drosophilid orthologs	Dpse\GA21587
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL010321-PA Aedes aegypti (mosquito) AGAP011080-PA Anopheles gambiae (mosquito) XP_624261.2 Apis mellifera (honey bee) XP_001948145.1 Acyrthosiphon pisum (pea aphid) At5g08280.1 Arabidopsis thaliana (wall cress) 289824 Branchiostoma floridae (lancelet) BGIBMGA000119-PA Bombyx mori (silk worm) ENSBTAP00000007052 Bos taurus (bovine) CAL0000854 Candida albicans (a form of yeast) ENSCINP00000013391 Ciona intestinalis (sea squirt) ENSCPOP00000005826 Cavia porcellus (guinea pig) ENSCSAVP00000015569 Ciona savignyi (sedentary tunicate) DDB0231417 Dictyostelium discoideum (amoeba) ENSDARP00000023322 Danio rerio (zebra fish) ENSGACP00000006841 Gymnopilus aculeatus (mushroom) 156805 Hypsipyla robusta (cedar shoot borer) 218866 Lottia gigantea (owl limpet) ENSMODP00000016622 Monodelphis domestica (gray opossum) 11360 Nematostella vectensis (starlet anemone) ENSORLP00000019210 Oryzias latipes (japanese killifish) LOC_Os02g07230.1 Oryza sativa (asian rice) PHUM002789-PA Pediculus humanus (human body louse) 80709 Phytophthora ramorum (sudden oak death pathogen) 4977681 Sorghum bicolor (sorghum) YDL205C Saccharomyces cerevisiae (budding yeast) Smp_095130 Schistosoma mansoni (trematode parasite) SPAC24B11.13 Schizosaccharomyces pombe (fission yeast) XP_967479.1 Tribolium castaneum (red flour beetle) ENSTNIP00000017380 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000025487 Takifugu rubripes (pufferfish Takifugu) YALI0F26609g Yarrowia lipolytica (nonconventional yeast) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV50236 LH17921 FBgn0238424 FBgn0214677 FBgn0199405 FBgn0185323 FBgn0169329 FBgn0081573 FBgn0153786 FBgn0134686 FBgn0122693 FBgn0107041 FBgn0101451 CPIJ007989 BGIBMGA000119 ACYPI008621 GB15699 AGAP011080 AAEL010321 PB20647 PHUM375690 GLEAN_13007
Stocks & Reagents
Stocks Listed in FlyBase ( 9 )
Bloomington	11574 P{PZ}l(3)0264002640 ry506 16894 y1 w67c23; P{EPgy2}l(3)02640EY08420 7292 l(3)026407E130 vn1 st1/TM6B, Tb1 22613 y1 w67c23; P{EPgy2}l(3)02640EY23217 CG2211EY23217
Harvard	- P{XP}l(3)02640d03897 - P{XP}l(3)02640d11517
Kyoto	123412 w1118; P{RS3}l(3)02640CB-5013-3 103652 w*; P{GawB}l(3)02640NP0559 / TM3, Ser1 105490 y* w*; P{GawB}l(3)02640NP7500 / TM6, P{UAS-lacZ.UW23-1}UW23-1
Genomic Clones ( 1 )
	BACR17K17 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 166 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH01718 GH12864 GH16723
Other clones	DPiM_GH16723 FI03834
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT24632 GH07682 GH11282 GH15788 GH17408 GH18588 GH24556 GM02268 HL02626 HL04817 LD35269 LD38107 LP06453 LP10545 LP17429 RE02205 RE16958 RE19089 RE24414 RE25094 RE28321 RE30521 RE34270 RE42742 RE42789 RE43857 RE53663 RE56893 RE61912 RE66748 RE73701 RH10534 RH13137 RH16064 RH29383 RH33848 RH38386 RH39905 RH42291 RH44850 RH45726 RH49381 RH52696 RH54551 RH55904 RH65110 RH65615 RH70018 RH70592 RH72327 SD22864
Other clones	59576 70093 71823 74945 80749 274497 bs45f11 Dmel_neb_001590_0335_3603 Dmel_neb_003772_0402_0416 Dmel_neb_011137_0319_2009 Dmel_neb_013352_0140_1297 EK186247 EK200460 EK207136 EK213855 EK290549 FGC012C04 RP003007380 RP003020350 RP003053390 RP003065173 RP003081241 RP003094547 RP003104501 RP003104709 RP003106976 RP003126896 RP003127829 RP003135113 RP003138341 RP003141597 RP003149932 RP003170073 RP003177003 RP003180708 RP003189665 RP003191138 RP003200672 RP003202281 RP003219072 RP003222833 RP003223088 RP003232124 RP003233791 RP003234911 RP003239497 RP003248040 RP003249364 RP003255114 RP003255619 RP003256376 RP003270223 RP003273526 RP003281680 RP003283257 RP003287603 RP003289329 RP003290933 RP003298867 RP003298980 RP003302156 RP003307844 RP003308296 RP003311398 RP003315145 RP003315868 RP003318715 RP003344028 RP003344617 RP003348161 RP003354762 RP003376457 RP003376790 RP003383730 RP003395360 RP003395830 RP003398576 RP003421024 RP003433501 RP003435508 RP003440846 RP003446097 RP003481121 RP003485971 RP003491931 RP003503558 RP003512424 RP003514803 RP003518467 RP003520641 RP003522152 RP003523556 RP003531399 RP003532781 RP003535588 RP003536475 RP003542718 RP003550821 RP003557172 RP003568271 RP003579763 RP003584209 RP003584895 RP003598803 RP003607404 RP003613346 RP003626655 RP003646634 RP003653103 RP003680428
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0010786 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 46140
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: l(3)02640 anon-WO0153538.70 (FlyBase, 1996-) Source for merge of: l(3)02640 CG9165 (Levis, 2002.6.17)
Additional comments	Source for merge of l(3)02640 anon-WO0153538.70 was sequence comparison (date:051113). (FlyBase, 1996-)
Other Comments
	Identification: Enhancer trap expression pattern survey for loci expressed in the ring gland. (Harvie et al., 1998)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_138259 RefSeq (Proteins) • NP_612103 DDBJ / EMBL / GenBank • AAF47484 AAL39179 AAN71175 AF006650 AI062495 AI135205 AQ254886 AW940061 AX201686 AY069034 BT001420 CL528110 CZ473619 CZ476233 CZ477161 CZ477782 G00701 Entrez Gene - A searchable database of RefSeq genes. • 46140 UniProtKB/TrEMBL • Q8IH53 Q8T0V4 Q9W0G4
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Tetrapyrrole biosynthesis, hydroxymethylbilane synthase (IPR000860) Porphobilinogen deaminase, N-terminal (IPR022417) Porphobilinogen deaminase, C-terminal (IPR022418) Porphobilinogen deaminase, dipyrromethane cofactor binding site (IPR022419)
Linkouts
	DPiM - DPiM, Drosophila Protein interaction Map • FBgn0010786 DroID - A comprehensive database of gene and protein interactions. • FBgn0010786 DRSC - Results from RNAi screens. • FBgn0010786 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0010786 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG5016-RA;CG9165-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0010786 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 46140 InParanoid A subset of ortholog calls from InParanoid. • AAEL010321-PA Aedes aegypti (mosquito) AGAP011080-PA Anopheles gambiae (mosquito) XP_624261.2 Apis mellifera (honey bee) XP_001948145.1 Acyrthosiphon pisum (pea aphid) At5g08280.1 Arabidopsis thaliana (wall cress) 289824 Branchiostoma floridae (lancelet) BGIBMGA000119-PA Bombyx mori (silk worm) ENSBTAP00000007052 Bos taurus (bovine) CAL0000854 Candida albicans (a form of yeast) ENSCINP00000013391 Ciona intestinalis (sea squirt) ENSCPOP00000005826 Cavia porcellus (guinea pig) ENSCSAVP00000015569 Ciona savignyi (sedentary tunicate) DDB0231417 Dictyostelium discoideum (amoeba) ENSDARP00000023322 Danio rerio (zebra fish) ENSGACP00000006841 Gymnopilus aculeatus (mushroom) 156805 Hypsipyla robusta (cedar shoot borer) 218866 Lottia gigantea (owl limpet) ENSMODP00000016622 Monodelphis domestica (gray opossum) 11360 Nematostella vectensis (starlet anemone) ENSORLP00000019210 Oryzias latipes (japanese killifish) LOC_Os02g07230.1 Oryza sativa (asian rice) PHUM002789-PA Pediculus humanus (human body louse) 80709 Phytophthora ramorum (sudden oak death pathogen) 4977681 Sorghum bicolor (sorghum) YDL205C Saccharomyces cerevisiae (budding yeast) Smp_095130 Schistosoma mansoni (trematode parasite) SPAC24B11.13 Schizosaccharomyces pombe (fission yeast) XP_967479.1 Tribolium castaneum (red flour beetle) ENSTNIP00000017380 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000025487 Takifugu rubripes (pufferfish Takifugu) YALI0F26609g Yarrowia lipolytica (nonconventional yeast) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 46140 modMine - Data generated by the modENCODE project. • FBgn0010786 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV50236 LH17921 FBgn0238424 FBgn0214677 FBgn0199405 FBgn0185323 FBgn0169329 FBgn0081573 FBgn0153786 FBgn0134686 FBgn0122693 FBgn0107041 FBgn0101451 CPIJ007989 BGIBMGA000119 ACYPI008621 GB15699 AGAP011080 AAEL010321 PB20647 PHUM375690 GLEAN_13007
Synonyms & Secondary IDs ( 12 )
Reported As
Symbol Synonym	2640 (Harvie et al., 1998) 3544 (Harvie et al., 1998) anon-WO0153538.70   CG9165 (Pile et al., 2003, Zou et al., 2000, Molnar et al., 2006, Ling and Salvaterra, 2011) l(3)7E130 (Wei et al., 2003) l(3)02640 (Gruenewald et al., 2009, Buszczak et al., 2007, Yu et al., 2010, Ling and Salvaterra, 2011) l(3)3544 (Harvie, 1997.6.4) l(3)j4E3   PBGD (Wei et al., 2003)
Name Synonym	hydroxymethylbilane synthase (Ling and Salvaterra, 2011) lethal (3) 02640   porphobilinogen deaminase (Wei et al., 2003)
Secondary FlyBase IDs
	FBgn0011370 FBgn0035212 FBgn0045880
References ( 29 )
Generate a list of	All references relating to this gene ( 29 )
List References by type	Research paper  ( 10 ) Supplementary material  ( 2 ) Personal communication to FlyBase  ( 6 ) FlyBase analysis  ( 3 ) DNA/RNA sequence record  ( 1 ) Computer file  ( 4 ) Automatic genome annotation  ( 1 ) Patent  ( 1 ) Curated genome annotation  ( 1 )
Recent research papers ( 2 )
	Ling and Salvaterra, 2011, PLoS ONE 6(3): e17762 Robust RT-qPCR Data Normalization: Validation and Selection of Internal Reference Genes during Post-Experimental Data Analysis. [FBrf0213272] Yu et al., 2010, PLoS Genet. 6(5): e1000969 Affecting Rhomboid-3 function causes a dilated heart in adult Drosophila. [FBrf0210954] Show all research papers ...