A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Gene Dmel\blw

General Information
SymbolDmel\blwSpeciesD. melanogaster
NamebellwetherAnnotation symbolCG3612
Feature typeprotein_coding_geneFlyBase IDFBgn0011211
Gene Model StatusCurrent Stock availability 14 publicly available
Also Known AsA2(2nd)27, ATPsyn-α
Genomic Location
Chromosome (arm)2RRecombination map
Cytogenetic map59B1-59B2Sequence location2R:18,686,561..18,689,685 [+]

Genomic Maps

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Automatically generated summary

See sections below for more information
The gene bellwether is referred to in FlyBase by the symbol Dmel\blw (CG3612, FBgn0011211). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: hydrogen-exporting ATPase activity, phosphorylative mechanism. There is experimental evidence that it is involved in the biological process: growth; spermatid development; phagocytosis, engulfment. 31 alleles are reported. The phenotype of these alleles is annotated with: mesothoracic tergum. It has one annotated transcript and one annotated polypeptide. Protein features are: ATPase, F1 complex, alpha subunit; ATPase, F1/A1 complex, alpha subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, alpha/beta subunit, N-terminal; ATPase, alpha/beta subunit, nucleotide-binding domain, active site. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of very high expression. Peak expression observed within 18-24 hour embryonic stages, during early larval stages, during late pupal stages, in stages of adults of both sexes. Summary of FlyAtlas Anatomical Expression Data: High levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1636548_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of blw. Gene sequence location is 2R:18686561..18689685.

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Description
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FB2013_03
FB2013_02
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
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FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
59B1-59B2  
Limits computationally determined from genome sequence between P{EP}ppaEP698&P{EP}EP2184 and P{PZ}blw03972  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
59B1-59B2  
(determined by in situ hybridisation)  
58F5-58F7  
59A1--3 59B1--2  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
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Please see the GBrowse view of Dmel\blw for information on other features GBrowse View Help
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0299572 FBtr0299573 FBtr0330241 FBtr0071883 FBtr0071914 FBtr0071913 FBtr0071911 FBtr0309858 FBpp0071794 FBti0103953 FBti0105171 FBti0057419 FBti0070264 FBti0054776 FBti0109280 FBti0046624 FBti0050419 FBti0002626 FBti0103741 FBti0005255 FBti0011209 FBti0034770 FBti0025653 FBti0107919 FBti0039881 FBti0034902 FBti0006941_1 FBti0003427_1 FBti0102921 FBti0105226 FBti0035018 FBti0005190 FBti0006941_2 FBti0023506 FBti0074740 FBti0003427_2 FBti0007769 FBti0108467 FBti0107058 FBti0033518 FBti0021596
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0071883
  2295
  552
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
blw-PA  
FBpp0071794  
59.4  
552  
9.44  
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
MitoDrome - A database of annotated Dmel nuclear genes encoding mitochondrial proteins
  • MTDROME03612
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
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Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
regulatory region
regulatory region
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
hide Polypeptide Expression
No Assay Recorded
Stage
Tissue/Position (including subcellular localization)
Reference
mass spectroscopy
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term
References
inferred from direct assay
hide Expression Deduced from Reporters
hide High-Throughput Expression Data
Associated Tools
Reference
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
hide FlyAtlas Anatomy Microarray

FlyAtlas Anatomical Expression Data

(FlyAtlas-RNA.adult)

(FlyAtlas-RNA.larva)


   Styles
   Scales

Summary of FlyAtlas Anatomical Expression Data: High levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (>999.999)

Linear, scaled to maximum expression level
Tissue   Expression Level
Larval Central Nervous System
 
 2259.5
Larval Midgut
 
 4692.7
Larval Hindgut
 
 4737.5
Larval Malpighian Tubules
 
 2775.5
Larval Fat Body
 
 2042.1
Larval Salivary Gland
 
 3974.6
Larval Trachea
 
 2527.175
Larval Carcass
 
 4540.975
Adult Head
 
 3463.2
Adult Eye
 
 3443.875
Adult Brain
 
 2769.9
Adult Thoracic-Abdominal Ganglion
 
 3719.1
Adult Crop
 
 4047.2
Adult Midgut
 
 3516.3
Adult Hindgut
 
 4630.1
Adult Malpighian Tubules
 
 5474.3
Adult Fat Body
 
 5347.4
Adult Salivary Gland
 
 9013.2
Adult Heart
 
 4228.6
Adult VirginFemale Spermatheca
 
 6418.5
Adult InseminatedFemale Spermatheca
 
 6445.3
Adult Ovary
 
 2346.9
Adult Testis
 
 811.6
Adult Male Accessory Gland
 
 3364.1
Adult Carcass
 
 6129.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 (2259.5)
Larval Midgut
 (4692.7)
Larval Hindgut
 (4737.5)
Larval Malpighian Tubules
 (2775.5)
Larval Fat Body
 (2042.1)
Larval Salivary Gland
 (3974.6)
Larval Trachea
 (2527.175)
Larval Carcass
 (4540.975)
Adult Head
 (3463.2)
Adult Eye
 (3443.875)
Adult Brain
 (2769.9)
Adult Thoracic-Abdominal Ganglion
 (3719.1)
Adult Crop
 (4047.2)
Adult Midgut
 (3516.3)
Adult Hindgut
 (4630.1)
Adult Malpighian Tubules
 (5474.3)
Adult Fat Body
 (5347.4)
Adult Salivary Gland
 (9013.2)
Adult Heart
 (4228.6)
Adult VirginFemale Spermatheca
 (6418.5)
Adult InseminatedFemale Spermatheca
 (6445.3)
Adult Ovary
 (2346.9)
Adult Testis
 (811.6)
Adult Male Accessory Gland
 (3364.1)
Adult Carcass
 (6129.4)
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 (2259.5)
Larval Midgut
 (4692.7)
Larval Hindgut
 (4737.5)
Larval Malpighian Tubules
 (2775.5)
Larval Fat Body
 (2042.1)
Larval Salivary Gland
 (3974.6)
Larval Trachea
 (2527.175)
Larval Carcass
 (4540.975)
Adult Head
 (3463.2)
Adult Eye
 (3443.875)
Adult Brain
 (2769.9)
Adult Thoracic-Abdominal Ganglion
 (3719.1)
Adult Crop
 (4047.2)
Adult Midgut
 (3516.3)
Adult Hindgut
 (4630.1)
Adult Malpighian Tubules
 (5474.3)
Adult Fat Body
 (5347.4)
Adult Salivary Gland
 (9013.2)
Adult Heart
 (4228.6)
Adult VirginFemale Spermatheca
 (6418.5)
Adult InseminatedFemale Spermatheca
 (6445.3)
Adult Ovary
 (2346.9)
Adult Testis
 
 811.6
Adult Male Accessory Gland
 (3364.1)
Adult Carcass
 (6129.4)
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 2259.5
Larval Midgut
 
 4692.7
Larval Hindgut
 
 4737.5
Larval Malpighian Tubules
 
 2775.5
Larval Fat Body
 
 2042.1
Larval Salivary Gland
 
 3974.6
Larval Trachea
 
 2527.175
Larval Carcass
 
 4540.975
Adult Head
 
 3463.2
Adult Eye
 
 3443.875
Adult Brain
 
 2769.9
Adult Thoracic-Abdominal Ganglion
 
 3719.1
Adult Crop
 
 4047.2
Adult Midgut
 
 3516.3
Adult Hindgut
 
 4630.1
Adult Malpighian Tubules
 
 5474.3
Adult Fat Body
 
 5347.4
Adult Salivary Gland
 
 9013.2
Adult Heart
 
 4228.6
Adult VirginFemale Spermatheca
 
 6418.5
Adult InseminatedFemale Spermatheca
 
 6445.3
Adult Ovary
 
 2346.9
Adult Testis
 
 811.6
Adult Male Accessory Gland
 
 3364.1
Adult Carcass
 
 6129.4
Expression Level Scale
 Very high 
log, scaled to maximum expression level
Tissue   Expression Level
Larval Central Nervous System
 
 2259.5
Larval Midgut
 
 4692.7
Larval Hindgut
 
 4737.5
Larval Malpighian Tubules
 
 2775.5
Larval Fat Body
 
 2042.1
Larval Salivary Gland
 
 3974.6
Larval Trachea
 
 2527.175
Larval Carcass
 
 4540.975
Adult Head
 
 3463.2
Adult Eye
 
 3443.875
Adult Brain
 
 2769.9
Adult Thoracic-Abdominal Ganglion
 
 3719.1
Adult Crop
 
 4047.2
Adult Midgut
 
 3516.3
Adult Hindgut
 
 4630.1
Adult Malpighian Tubules
 
 5474.3
Adult Fat Body
 
 5347.4
Adult Salivary Gland
 
 9013.2
Adult Heart
 
 4228.6
Adult VirginFemale Spermatheca
 
 6418.5
Adult InseminatedFemale Spermatheca
 
 6445.3
Adult Ovary
 
 2346.9
Adult Testis
 
 811.6
Adult Male Accessory Gland
 
 3364.1
Adult Carcass
 
 6129.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 (2259.5)
Larval Midgut
 (4692.7)
Larval Hindgut
 (4737.5)
Larval Malpighian Tubules
 (2775.5)
Larval Fat Body
 (2042.1)
Larval Salivary Gland
 (3974.6)
Larval Trachea
 (2527.175)
Larval Carcass
 (4540.975)
Adult Head
 (3463.2)
Adult Eye
 (3443.875)
Adult Brain
 (2769.9)
Adult Thoracic-Abdominal Ganglion
 (3719.1)
Adult Crop
 (4047.2)
Adult Midgut
 (3516.3)
Adult Hindgut
 (4630.1)
Adult Malpighian Tubules
 (5474.3)
Adult Fat Body
 (5347.4)
Adult Salivary Gland
 (9013.2)
Adult Heart
 (4228.6)
Adult VirginFemale Spermatheca
 (6418.5)
Adult InseminatedFemale Spermatheca
 (6445.3)
Adult Ovary
 (2346.9)
Adult Testis
 811.6
Adult Male Accessory Gland
 (3364.1)
Adult Carcass
 (6129.4)
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 (2259.5)
Larval Midgut
 (4692.7)
Larval Hindgut
 (4737.5)
Larval Malpighian Tubules
 (2775.5)
Larval Fat Body
 (2042.1)
Larval Salivary Gland
 (3974.6)
Larval Trachea
 (2527.175)
Larval Carcass
 (4540.975)
Adult Head
 (3463.2)
Adult Eye
 (3443.875)
Adult Brain
 (2769.9)
Adult Thoracic-Abdominal Ganglion
 (3719.1)
Adult Crop
 (4047.2)
Adult Midgut
 (3516.3)
Adult Hindgut
 (4630.1)
Adult Malpighian Tubules
 (5474.3)
Adult Fat Body
 (5347.4)
Adult Salivary Gland
 (9013.2)
Adult Heart
 (4228.6)
Adult VirginFemale Spermatheca
 (6418.5)
Adult InseminatedFemale Spermatheca
 (6445.3)
Adult Ovary
 (2346.9)
Adult Testis
 
 811.6
Adult Male Accessory Gland
 (3364.1)
Adult Carcass
 (6129.4)
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 2259.5
Larval Midgut
 
 4692.7
Larval Hindgut
 
 4737.5
Larval Malpighian Tubules
 
 2775.5
Larval Fat Body
 
 2042.1
Larval Salivary Gland
 
 3974.6
Larval Trachea
 
 2527.175
Larval Carcass
 
 4540.975
Adult Head
 
 3463.2
Adult Eye
 
 3443.875
Adult Brain
 
 2769.9
Adult Thoracic-Abdominal Ganglion
 
 3719.1
Adult Crop
 
 4047.2
Adult Midgut
 
 3516.3
Adult Hindgut
 
 4630.1
Adult Malpighian Tubules
 
 5474.3
Adult Fat Body
 
 5347.4
Adult Salivary Gland
 
 9013.2
Adult Heart
 
 4228.6
Adult VirginFemale Spermatheca
 
 6418.5
Adult InseminatedFemale Spermatheca
 
 6445.3
Adult Ovary
 
 2346.9
Adult Testis
 
 811.6
Adult Male Accessory Gland
 
 3364.1
Adult Carcass
 
 6129.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body
 
 
Adult Salivary Gland
 
 
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass
 
 

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 3463.2
 
NA 
Eye
 
 3443.875
 
NA 
Brain
 
 2769.9
 
2259.5 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 3719.1
 
NA 
Crop
 
 4047.2
 
4692.7 
Midgut
 
 3516.3
 
4737.5 
Hindgut
 
 4630.1
 
2775.5 
Malpighian Tubules
 
 5474.3
 
2042.1 
Fat Body
 
 5347.4
 
3974.6 
Salivary Gland
 
 9013.2
 
NA 
Heart
 
 4228.6
 
2527.175 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 6418.5
 
NA 
InseminatedFemale Spermatheca
 
 6445.3
 
NA 
Ovary
 
 2346.9
 
NA 
Testis
 
 811.6
 
NA 
Male Accessory Gland
 
 3364.1
 
4540.975 
Carcass
 
 6129.4

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 260
central nervous system, larvae L3
 
 129
central nervous system, pupae P8
 
 154
head, virgin 1-day female
 
 569
head, virgin 4-day female
 
 235
head, virgin 20-day female
 
 281
head, mated 1-day female
 
 394
head, mated 4-day female
 
 157
head, mated 20-day female
 
 227
head, mated 1-day male
 
 596
head, mated 4-day male
 
 215
head, mated 20-day male
 
 182
salivary gland, larvae L3 wandering
 
 8
salivary gland, white prepupae
 
 20
digestive system, larvae L3 wandering
 
 73
digestive system, 1-day adult
 
 249
digestive system, 4-day adult
 
 179
digestive system, 20-day adult
 
 208
fat body, larvae L3 wandering
 
 69
fat body, white prepupae
 
 43
fat body, pupae P8
 
 73
carcass, larvae L3 wandering
 
 117
carcass, 1-day adult
 
 1158
carcass, 4-day adult
 
 349
carcass, 20-day adult
 
 244
ovary, virgin 4-day female
 
 239
ovary, mated 4-day female
 
 211
testis, mated 4-day male
 
 51
accessory gland, mated 4-day male
 
 84
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Linear, scaled to Moderate expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 (260)
central nervous system, larvae L3
 (129)
central nervous system, pupae P8
 (154)
head, virgin 1-day female
 (569)
head, virgin 4-day female
 (235)
head, virgin 20-day female
 (281)
head, mated 1-day female
 (394)
head, mated 4-day female
 (157)
head, mated 20-day female
 (227)
head, mated 1-day male
 (596)
head, mated 4-day male
 (215)
head, mated 20-day male
 (182)
salivary gland, larvae L3 wandering
 
 8
salivary gland, white prepupae
 
 20
digestive system, larvae L3 wandering
 (73)
digestive system, 1-day adult
 (249)
digestive system, 4-day adult
 (179)
digestive system, 20-day adult
 (208)
fat body, larvae L3 wandering
 (69)
fat body, white prepupae
 (43)
fat body, pupae P8
 (73)
carcass, larvae L3 wandering
 (117)
carcass, 1-day adult
 (1158)
carcass, 4-day adult
 (349)
carcass, 20-day adult
 (244)
ovary, virgin 4-day female
 (239)
ovary, mated 4-day female
 (211)
testis, mated 4-day male
 (51)
accessory gland, mated 4-day male
 (84)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 (260)
central nervous system, larvae L3
 (129)
central nervous system, pupae P8
 (154)
head, virgin 1-day female
 (569)
head, virgin 4-day female
 (235)
head, virgin 20-day female
 (281)
head, mated 1-day female
 (394)
head, mated 4-day female
 (157)
head, mated 20-day female
 (227)
head, mated 1-day male
 (596)
head, mated 4-day male
 (215)
head, mated 20-day male
 (182)
salivary gland, larvae L3 wandering
 
 8
salivary gland, white prepupae
 
 20
digestive system, larvae L3 wandering
 
 73
digestive system, 1-day adult
 (249)
digestive system, 4-day adult
 (179)
digestive system, 20-day adult
 (208)
fat body, larvae L3 wandering
 
 69
fat body, white prepupae
 
 43
fat body, pupae P8
 
 73
carcass, larvae L3 wandering
 (117)
carcass, 1-day adult
 (1158)
carcass, 4-day adult
 (349)
carcass, 20-day adult
 (244)
ovary, virgin 4-day female
 (239)
ovary, mated 4-day female
 (211)
testis, mated 4-day male
 
 51
accessory gland, mated 4-day male
 
 84
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 260
central nervous system, larvae L3
 
 129
central nervous system, pupae P8
 
 154
head, virgin 1-day female
 
 569
head, virgin 4-day female
 
 235
head, virgin 20-day female
 
 281
head, mated 1-day female
 
 394
head, mated 4-day female
 
 157
head, mated 20-day female
 
 227
head, mated 1-day male
 
 596
head, mated 4-day male
 
 215
head, mated 20-day male
 
 182
salivary gland, larvae L3 wandering
 
 8
salivary gland, white prepupae
 
 20
digestive system, larvae L3 wandering
 
 73
digestive system, 1-day adult
 
 249
digestive system, 4-day adult
 
 179
digestive system, 20-day adult
 
 208
fat body, larvae L3 wandering
 
 69
fat body, white prepupae
 
 43
fat body, pupae P8
 
 73
carcass, larvae L3 wandering
 
 117
carcass, 1-day adult
 
 1158
carcass, 4-day adult
 
 349
carcass, 20-day adult
 
 244
ovary, virgin 4-day female
 
 239
ovary, mated 4-day female
 
 211
testis, mated 4-day male
 
 51
accessory gland, mated 4-day male
 
 84
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 260
central nervous system, larvae L3
 
 129
central nervous system, pupae P8
 
 154
head, virgin 1-day female
 
 569
head, virgin 4-day female
 
 235
head, virgin 20-day female
 
 281
head, mated 1-day female
 
 394
head, mated 4-day female
 
 157
head, mated 20-day female
 
 227
head, mated 1-day male
 
 596
head, mated 4-day male
 
 215
head, mated 20-day male
 
 182
salivary gland, larvae L3 wandering
 
 8
salivary gland, white prepupae
 
 20
digestive system, larvae L3 wandering
 
 73
digestive system, 1-day adult
 
 249
digestive system, 4-day adult
 
 179
digestive system, 20-day adult
 
 208
fat body, larvae L3 wandering
 
 69
fat body, white prepupae
 
 43
fat body, pupae P8
 
 73
carcass, larvae L3 wandering
 
 117
carcass, 1-day adult
 
 1158
carcass, 4-day adult
 
 349
carcass, 20-day adult
 
 244
ovary, virgin 4-day female
 
 239
ovary, mated 4-day female
 
 211
testis, mated 4-day male
 
 51
accessory gland, mated 4-day male
 
 84
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to Moderate expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 (260)
central nervous system, larvae L3
 (129)
central nervous system, pupae P8
 (154)
head, virgin 1-day female
 (569)
head, virgin 4-day female
 (235)
head, virgin 20-day female
 (281)
head, mated 1-day female
 (394)
head, mated 4-day female
 (157)
head, mated 20-day female
 (227)
head, mated 1-day male
 (596)
head, mated 4-day male
 (215)
head, mated 20-day male
 (182)
salivary gland, larvae L3 wandering
 
 8
salivary gland, white prepupae
 
 20
digestive system, larvae L3 wandering
 (73)
digestive system, 1-day adult
 (249)
digestive system, 4-day adult
 (179)
digestive system, 20-day adult
 (208)
fat body, larvae L3 wandering
 (69)
fat body, white prepupae
 (43)
fat body, pupae P8
 (73)
carcass, larvae L3 wandering
 (117)
carcass, 1-day adult
 (1158)
carcass, 4-day adult
 (349)
carcass, 20-day adult
 (244)
ovary, virgin 4-day female
 (239)
ovary, mated 4-day female
 (211)
testis, mated 4-day male
 (51)
accessory gland, mated 4-day male
 (84)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 (260)
central nervous system, larvae L3
 129
central nervous system, pupae P8
 (154)
head, virgin 1-day female
 (569)
head, virgin 4-day female
 (235)
head, virgin 20-day female
 (281)
head, mated 1-day female
 (394)
head, mated 4-day female
 (157)
head, mated 20-day female
 (227)
head, mated 1-day male
 (596)
head, mated 4-day male
 (215)
head, mated 20-day male
 (182)
salivary gland, larvae L3 wandering
 
 8
salivary gland, white prepupae
 
 20
digestive system, larvae L3 wandering
 
 73
digestive system, 1-day adult
 (249)
digestive system, 4-day adult
 (179)
digestive system, 20-day adult
 (208)
fat body, larvae L3 wandering
 
 69
fat body, white prepupae
 
 43
fat body, pupae P8
 
 73
carcass, larvae L3 wandering
 117
carcass, 1-day adult
 (1158)
carcass, 4-day adult
 (349)
carcass, 20-day adult
 (244)
ovary, virgin 4-day female
 (239)
ovary, mated 4-day female
 (211)
testis, mated 4-day male
 
 51
accessory gland, mated 4-day male
 
 84
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 260
central nervous system, larvae L3
 
 129
central nervous system, pupae P8
 
 154
head, virgin 1-day female
 
 569
head, virgin 4-day female
 
 235
head, virgin 20-day female
 
 281
head, mated 1-day female
 
 394
head, mated 4-day female
 
 157
head, mated 20-day female
 
 227
head, mated 1-day male
 
 596
head, mated 4-day male
 
 215
head, mated 20-day male
 
 182
salivary gland, larvae L3 wandering
 
 8
salivary gland, white prepupae
 
 20
digestive system, larvae L3 wandering
 
 73
digestive system, 1-day adult
 
 249
digestive system, 4-day adult
 
 179
digestive system, 20-day adult
 
 208
fat body, larvae L3 wandering
 
 69
fat body, white prepupae
 
 43
fat body, pupae P8
 
 73
carcass, larvae L3 wandering
 
 117
carcass, 1-day adult
 
 1158
carcass, 4-day adult
 
 349
carcass, 20-day adult
 
 244
ovary, virgin 4-day female
 
 239
ovary, mated 4-day female
 
 211
testis, mated 4-day male
 
 51
accessory gland, mated 4-day male
 
 84
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 
central nervous system, larvae L3
 
 
central nervous system, pupae P8
 
 
head, virgin 1-day female
 
 
head, virgin 4-day female
 
 
head, virgin 20-day female
 
 
head, mated 1-day female
 
 
head, mated 4-day female
 
 
head, mated 20-day female
 
 
head, mated 1-day male
 
 
head, mated 4-day male
 
 
head, mated 20-day male
 
 
salivary gland, larvae L3 wandering
 
 
salivary gland, white prepupae
 
 
digestive system, larvae L3 wandering
 
 
digestive system, 1-day adult
 
 
digestive system, 4-day adult
 
 
digestive system, 20-day adult
 
 
fat body, larvae L3 wandering
 
 
fat body, white prepupae
 
 
fat body, pupae P8
 
 
carcass, larvae L3 wandering
 
 
carcass, 1-day adult
 
 
carcass, 4-day adult
 
 
carcass, 20-day adult
 
 
ovary, virgin 4-day female
 
 
ovary, mated 4-day female
 
 
testis, mated 4-day male
 
 
accessory gland, mated 4-day male
 
 

hide modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)


   Styles
   Scales

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of very high expression. Peak expression observed within 18-24 hour embryonic stages, during early larval stages, during late pupal stages, in stages of adults of both sexes.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 741
embryo 02-04hr
 
 376
embryo 04-06hr
 
 206
embryo 06-08hr
 
 273
embryo 08-10hr
 
 336
embryo 10-12hr
 
 535
embryo 12-14hr
 
 488
embryo 14-16hr
 
 1095
embryo 16-18hr
 
 1147
embryo 18-20hr
 
 1420
embryo 20-22hr
 
 1570
embryo 22-24hr
 
 1338
larva L1
 
 2350
larva L2
 
 2175
larva L3 12hr old
 
 2185
larva L3 puffstage 1-2
 
 761
larva L3 puffstage 3-6
 
 422
larva L3 puffstage 7-9
 
 289
white prepupae new
 
 287
white prepupae 12hr
 
 259
white prepupae 24hr
 
 318
pupae 2d postWPP
 
 620
pupae 3d postWPP
 
 2061
pupae 4d postWPP
 
 3724
adult male 01day
 
 2975
adult male 05day
 
 1588
adult male 30day
 
 837
adult female 01day
 
 3223
adult female 05day
 
 970
adult female 30day
 
 818
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (741)
embryo 02-04hr
 (376)
embryo 04-06hr
 (206)
embryo 06-08hr
 (273)
embryo 08-10hr
 (336)
embryo 10-12hr
 (535)
embryo 12-14hr
 (488)
embryo 14-16hr
 (1095)
embryo 16-18hr
 (1147)
embryo 18-20hr
 (1420)
embryo 20-22hr
 (1570)
embryo 22-24hr
 (1338)
larva L1
 (2350)
larva L2
 (2175)
larva L3 12hr old
 (2185)
larva L3 puffstage 1-2
 (761)
larva L3 puffstage 3-6
 (422)
larva L3 puffstage 7-9
 (289)
white prepupae new
 (287)
white prepupae 12hr
 (259)
white prepupae 24hr
 (318)
pupae 2d postWPP
 (620)
pupae 3d postWPP
 (2061)
pupae 4d postWPP
 (3724)
adult male 01day
 (2975)
adult male 05day
 (1588)
adult male 30day
 (837)
adult female 01day
 (3223)
adult female 05day
 (970)
adult female 30day
 (818)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 (741)
embryo 02-04hr
 (376)
embryo 04-06hr
 (206)
embryo 06-08hr
 (273)
embryo 08-10hr
 (336)
embryo 10-12hr
 (535)
embryo 12-14hr
 (488)
embryo 14-16hr
 (1095)
embryo 16-18hr
 (1147)
embryo 18-20hr
 (1420)
embryo 20-22hr
 (1570)
embryo 22-24hr
 (1338)
larva L1
 (2350)
larva L2
 (2175)
larva L3 12hr old
 (2185)
larva L3 puffstage 1-2
 (761)
larva L3 puffstage 3-6
 (422)
larva L3 puffstage 7-9
 (289)
white prepupae new
 (287)
white prepupae 12hr
 (259)
white prepupae 24hr
 (318)
pupae 2d postWPP
 (620)
pupae 3d postWPP
 (2061)
pupae 4d postWPP
 (3724)
adult male 01day
 (2975)
adult male 05day
 (1588)
adult male 30day
 (837)
adult female 01day
 (3223)
adult female 05day
 (970)
adult female 30day
 (818)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 741
embryo 02-04hr
 
 376
embryo 04-06hr
 
 206
embryo 06-08hr
 
 273
embryo 08-10hr
 
 336
embryo 10-12hr
 
 535
embryo 12-14hr
 
 488
embryo 14-16hr
 
 1095
embryo 16-18hr
 
 1147
embryo 18-20hr
 
 1420
embryo 20-22hr
 
 1570
embryo 22-24hr
 
 1338
larva L1
 
 2350
larva L2
 
 2175
larva L3 12hr old
 
 2185
larva L3 puffstage 1-2
 
 761
larva L3 puffstage 3-6
 
 422
larva L3 puffstage 7-9
 
 289
white prepupae new
 
 287
white prepupae 12hr
 
 259
white prepupae 24hr
 
 318
pupae 2d postWPP
 
 620
pupae 3d postWPP
 
 2061
pupae 4d postWPP
 
 3724
adult male 01day
 
 2975
adult male 05day
 
 1588
adult male 30day
 
 837
adult female 01day
 
 3223
adult female 05day
 
 970
adult female 30day
 
 818
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 741
embryo 02-04hr
 
 376
embryo 04-06hr
 
 206
embryo 06-08hr
 
 273
embryo 08-10hr
 
 336
embryo 10-12hr
 
 535
embryo 12-14hr
 
 488
embryo 14-16hr
 
 1095
embryo 16-18hr
 
 1147
embryo 18-20hr
 
 1420
embryo 20-22hr
 
 1570
embryo 22-24hr
 
 1338
larva L1
 
 2350
larva L2
 
 2175
larva L3 12hr old
 
 2185
larva L3 puffstage 1-2
 
 761
larva L3 puffstage 3-6
 
 422
larva L3 puffstage 7-9
 
 289
white prepupae new
 
 287
white prepupae 12hr
 
 259
white prepupae 24hr
 
 318
pupae 2d postWPP
 
 620
pupae 3d postWPP
 
 2061
pupae 4d postWPP
 
 3724
adult male 01day
 
 2975
adult male 05day
 
 1588
adult male 30day
 
 837
adult female 01day
 
 3223
adult female 05day
 
 970
adult female 30day
 
 818
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (741)
embryo 02-04hr
 (376)
embryo 04-06hr
 (206)
embryo 06-08hr
 (273)
embryo 08-10hr
 (336)
embryo 10-12hr
 (535)
embryo 12-14hr
 (488)
embryo 14-16hr
 (1095)
embryo 16-18hr
 (1147)
embryo 18-20hr
 (1420)
embryo 20-22hr
 (1570)
embryo 22-24hr
 (1338)
larva L1
 (2350)
larva L2
 (2175)
larva L3 12hr old
 (2185)
larva L3 puffstage 1-2
 (761)
larva L3 puffstage 3-6
 (422)
larva L3 puffstage 7-9
 (289)
white prepupae new
 (287)
white prepupae 12hr
 (259)
white prepupae 24hr
 (318)
pupae 2d postWPP
 (620)
pupae 3d postWPP
 (2061)
pupae 4d postWPP
 (3724)
adult male 01day
 (2975)
adult male 05day
 (1588)
adult male 30day
 (837)
adult female 01day
 (3223)
adult female 05day
 (970)
adult female 30day
 (818)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 (741)
embryo 02-04hr
 (376)
embryo 04-06hr
 (206)
embryo 06-08hr
 (273)
embryo 08-10hr
 (336)
embryo 10-12hr
 (535)
embryo 12-14hr
 (488)
embryo 14-16hr
 (1095)
embryo 16-18hr
 (1147)
embryo 18-20hr
 (1420)
embryo 20-22hr
 (1570)
embryo 22-24hr
 (1338)
larva L1
 (2350)
larva L2
 (2175)
larva L3 12hr old
 (2185)
larva L3 puffstage 1-2
 (761)
larva L3 puffstage 3-6
 (422)
larva L3 puffstage 7-9
 (289)
white prepupae new
 (287)
white prepupae 12hr
 (259)
white prepupae 24hr
 (318)
pupae 2d postWPP
 (620)
pupae 3d postWPP
 (2061)
pupae 4d postWPP
 (3724)
adult male 01day
 (2975)
adult male 05day
 (1588)
adult male 30day
 (837)
adult female 01day
 (3223)
adult female 05day
 (970)
adult female 30day
 (818)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 741
embryo 02-04hr
 
 376
embryo 04-06hr
 
 206
embryo 06-08hr
 
 273
embryo 08-10hr
 
 336
embryo 10-12hr
 
 535
embryo 12-14hr
 
 488
embryo 14-16hr
 
 1095
embryo 16-18hr
 
 1147
embryo 18-20hr
 
 1420
embryo 20-22hr
 
 1570
embryo 22-24hr
 
 1338
larva L1
 
 2350
larva L2
 
 2175
larva L3 12hr old
 
 2185
larva L3 puffstage 1-2
 
 761
larva L3 puffstage 3-6
 
 422
larva L3 puffstage 7-9
 
 289
white prepupae new
 
 287
white prepupae 12hr
 
 259
white prepupae 24hr
 
 318
pupae 2d postWPP
 
 620
pupae 3d postWPP
 
 2061
pupae 4d postWPP
 
 3724
adult male 01day
 
 2975
adult male 05day
 
 1588
adult male 30day
 
 837
adult female 01day
 
 3223
adult female 05day
 
 970
adult female 30day
 
 818
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

modENCODE Temporal Expression Data (Graveley et al., 2011)
hide modENCODE Cell Lines RNA-Seq

modENCODE Cell Line Expression Data

(modENCODE_mRNA-Seq_cell.A)

(modENCODE_mRNA-Seq_cell.B)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Cell Line   Expression Level
Schneider line 2 S2R+
 
 210
Schneider line 2 Sg4
 
 190
embryonic 1182-4H
 
 157
embryonic GM2
 
 112
embryonic Kc167
 
 74
embryonic S1
 
 332
embryonic S3
 
 212
leg disc CME L1
 
 167
wing disc CME-W2
 
 200
wing disc ML-DmD8
 
 162
wing disc ML-DmD9
 
 291
wing disc ML-DmD16-c3
 
 171
wing disc ML-DmD21
 
 172
wing disc ML-DmD32
 
 135
haltere disc ML-DmD17-c3
 
 471
eye-antennal disc ML-DmD11
 
 417
antennal disc ML-DmD20-c5
 
 194
mixed discs ML-DmD4-c1
 
 135
CNS ML-DmBG1-c1
 
 200
CNS ML-DmBG2-c2
 
 90
tumorous blood cells mbn2
 
 114
ovary fGS/OSS
 
 107
ovary OSC
 
 97
ovary OSS
 
 41
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Moderate expression
Cell Line   Expression Level
Schneider line 2 S2R+
 (210)
Schneider line 2 Sg4
 (190)
embryonic 1182-4H
 (157)
embryonic GM2
 (112)
embryonic Kc167
 (74)
embryonic S1
 (332)
embryonic S3
 (212)
leg disc CME L1
 (167)
wing disc CME-W2
 (200)
wing disc ML-DmD8
 (162)
wing disc ML-DmD9
 (291)
wing disc ML-DmD16-c3
 (171)
wing disc ML-DmD21
 (172)
wing disc ML-DmD32
 (135)
haltere disc ML-DmD17-c3
 (471)
eye-antennal disc ML-DmD11
 (417)
antennal disc ML-DmD20-c5
 (194)
mixed discs ML-DmD4-c1
 (135)
CNS ML-DmBG1-c1
 (200)
CNS ML-DmBG2-c2
 (90)
tumorous blood cells mbn2
 (114)
ovary fGS/OSS
 (107)
ovary OSC
 (97)
ovary OSS
 (41)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Cell Line   Expression Level
Schneider line 2 S2R+
 (210)
Schneider line 2 Sg4
 (190)
embryonic 1182-4H
 (157)
embryonic GM2
 (112)
embryonic Kc167
 
 74
embryonic S1
 (332)
embryonic S3
 (212)
leg disc CME L1
 (167)
wing disc CME-W2
 (200)
wing disc ML-DmD8
 (162)
wing disc ML-DmD9
 (291)
wing disc ML-DmD16-c3
 (171)
wing disc ML-DmD21
 (172)
wing disc ML-DmD32
 (135)
haltere disc ML-DmD17-c3
 (471)
eye-antennal disc ML-DmD11
 (417)
antennal disc ML-DmD20-c5
 (194)
mixed discs ML-DmD4-c1
 (135)
CNS ML-DmBG1-c1
 (200)
CNS ML-DmBG2-c2
 
 90
tumorous blood cells mbn2
 (114)
ovary fGS/OSS
 107
ovary OSC
 
 97
ovary OSS
 
 41
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 210
Schneider line 2 Sg4
 
 190
embryonic 1182-4H
 
 157
embryonic GM2
 
 112
embryonic Kc167
 
 74
embryonic S1
 
 332
embryonic S3
 
 212
leg disc CME L1
 
 167
wing disc CME-W2
 
 200
wing disc ML-DmD8
 
 162
wing disc ML-DmD9
 
 291
wing disc ML-DmD16-c3
 
 171
wing disc ML-DmD21
 
 172
wing disc ML-DmD32
 
 135
haltere disc ML-DmD17-c3
 
 471
eye-antennal disc ML-DmD11
 
 417
antennal disc ML-DmD20-c5
 
 194
mixed discs ML-DmD4-c1
 
 135
CNS ML-DmBG1-c1
 
 200
CNS ML-DmBG2-c2
 
 90
tumorous blood cells mbn2
 
 114
ovary fGS/OSS
 
 107
ovary OSC
 
 97
ovary OSS
 
 41
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Cell Line   Expression Level
Schneider line 2 S2R+
 
 210
Schneider line 2 Sg4
 
 190
embryonic 1182-4H
 
 157
embryonic GM2
 
 112
embryonic Kc167
 
 74
embryonic S1
 
 332
embryonic S3
 
 212
leg disc CME L1
 
 167
wing disc CME-W2
 
 200
wing disc ML-DmD8
 
 162
wing disc ML-DmD9
 
 291
wing disc ML-DmD16-c3
 
 171
wing disc ML-DmD21
 
 172
wing disc ML-DmD32
 
 135
haltere disc ML-DmD17-c3
 
 471
eye-antennal disc ML-DmD11
 
 417
antennal disc ML-DmD20-c5
 
 194
mixed discs ML-DmD4-c1
 
 135
CNS ML-DmBG1-c1
 
 200
CNS ML-DmBG2-c2
 
 90
tumorous blood cells mbn2
 
 114
ovary fGS/OSS
 
 107
ovary OSC
 
 97
ovary OSS
 
 41
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Moderate expression
Cell Line   Expression Level
Schneider line 2 S2R+
 (210)
Schneider line 2 Sg4
 (190)
embryonic 1182-4H
 (157)
embryonic GM2
 (112)
embryonic Kc167
 (74)
embryonic S1
 (332)
embryonic S3
 (212)
leg disc CME L1
 (167)
wing disc CME-W2
 (200)
wing disc ML-DmD8
 (162)
wing disc ML-DmD9
 (291)
wing disc ML-DmD16-c3
 (171)
wing disc ML-DmD21
 (172)
wing disc ML-DmD32
 (135)
haltere disc ML-DmD17-c3
 (471)
eye-antennal disc ML-DmD11
 (417)
antennal disc ML-DmD20-c5
 (194)
mixed discs ML-DmD4-c1
 (135)
CNS ML-DmBG1-c1
 (200)
CNS ML-DmBG2-c2
 (90)
tumorous blood cells mbn2
 (114)
ovary fGS/OSS
 (107)
ovary OSC
 (97)
ovary OSS
 (41)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Cell Line   Expression Level
Schneider line 2 S2R+
 (210)
Schneider line 2 Sg4
 (190)
embryonic 1182-4H
 (157)
embryonic GM2
 112
embryonic Kc167
 
 74
embryonic S1
 (332)
embryonic S3
 (212)
leg disc CME L1
 (167)
wing disc CME-W2
 (200)
wing disc ML-DmD8
 (162)
wing disc ML-DmD9
 (291)
wing disc ML-DmD16-c3
 (171)
wing disc ML-DmD21
 (172)
wing disc ML-DmD32
 135
haltere disc ML-DmD17-c3
 (471)
eye-antennal disc ML-DmD11
 (417)
antennal disc ML-DmD20-c5
 (194)
mixed discs ML-DmD4-c1
 135
CNS ML-DmBG1-c1
 (200)
CNS ML-DmBG2-c2
 
 90
tumorous blood cells mbn2
 114
ovary fGS/OSS
 107
ovary OSC
 
 97
ovary OSS
 
 41
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 210
Schneider line 2 Sg4
 
 190
embryonic 1182-4H
 
 157
embryonic GM2
 
 112
embryonic Kc167
 
 74
embryonic S1
 
 332
embryonic S3
 
 212
leg disc CME L1
 
 167
wing disc CME-W2
 
 200
wing disc ML-DmD8
 
 162
wing disc ML-DmD9
 
 291
wing disc ML-DmD16-c3
 
 171
wing disc ML-DmD21
 
 172
wing disc ML-DmD32
 
 135
haltere disc ML-DmD17-c3
 
 471
eye-antennal disc ML-DmD11
 
 417
antennal disc ML-DmD20-c5
 
 194
mixed discs ML-DmD4-c1
 
 135
CNS ML-DmBG1-c1
 
 200
CNS ML-DmBG2-c2
 
 90
tumorous blood cells mbn2
 
 114
ovary fGS/OSS
 
 107
ovary OSC
 
 97
ovary OSS
 
 41
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Cell Line   Expression Level
Schneider line 2 S2R+
 
 
Schneider line 2 Sg4
 
 
embryonic 1182-4H
 
 
embryonic GM2
 
 
embryonic Kc167
 
 
embryonic S1
 
 
embryonic S3
 
 
leg disc CME L1
 
 
wing disc CME-W2
 
 
wing disc ML-DmD8
 
 
wing disc ML-DmD9
 
 
wing disc ML-DmD16-c3
 
 
wing disc ML-DmD21
 
 
wing disc ML-DmD32
 
 
haltere disc ML-DmD17-c3
 
 
eye-antennal disc ML-DmD11
 
 
antennal disc ML-DmD20-c5
 
 
mixed discs ML-DmD4-c1
 
 
CNS ML-DmBG1-c1
 
 
CNS ML-DmBG2-c2
 
 
tumorous blood cells mbn2
 
 
ovary fGS/OSS
 
 
ovary OSC
 
 
ovary OSS
 
 

hide modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment   Expression Level
extended cold, 4-day adult
 
 183
cold shock, 4-day adult
 
 116
heat shock, 4-day adult
 
 400
Cadmium 50 mM 6 hrs, larvae L3
 
 420
Cadmium 50 mM 12 hrs, larvae L3
 
 164
Cadmium 50 mM 48 hrs, 4-day adult
 
 386
Cadmium 100 mM 48 hrs, 4-day adult
 
 194
Copper 0.5 mM 12 hrs, larvae L3
 
 245
Copper 15 mM 48 hrs, 4-day adult
 
 88
Zinc 5 mM 12 hrs, larvae L3
 
 174
Zinc 4.5 mM 48 hrs, 4-day adult
 
 111
Ethanol 2.5% 3 hrs, larvae L3
 
 481
Ethanol 5% 3 hrs, larvae L3
 
 414
Ethanol 10% 3 hrs, larvae L3
 
 473
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 405
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 190
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 130
Paraquat 5 mM 48 hrs, 4-day adult
 
 324
Paraquat 10 mM 48 hrs, 4-day adult
 
 372
Rotenone 2 μg 12 hrs, larvae L3
 
 422
Rotenone 8 μg 12 hrs, larvae L3
 
 742
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Moderate expression
Treatment   Expression Level
extended cold, 4-day adult
 (183)
cold shock, 4-day adult
 (116)
heat shock, 4-day adult
 (400)
Cadmium 50 mM 6 hrs, larvae L3
 (420)
Cadmium 50 mM 12 hrs, larvae L3
 (164)
Cadmium 50 mM 48 hrs, 4-day adult
 (386)
Cadmium 100 mM 48 hrs, 4-day adult
 (194)
Copper 0.5 mM 12 hrs, larvae L3
 (245)
Copper 15 mM 48 hrs, 4-day adult
 (88)
Zinc 5 mM 12 hrs, larvae L3
 (174)
Zinc 4.5 mM 48 hrs, 4-day adult
 (111)
Ethanol 2.5% 3 hrs, larvae L3
 (481)
Ethanol 5% 3 hrs, larvae L3
 (414)
Ethanol 10% 3 hrs, larvae L3
 (473)
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 (405)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 (190)
Caffeine 25 mg/ml 48 hrs, 4-day adult
 (130)
Paraquat 5 mM 48 hrs, 4-day adult
 (324)
Paraquat 10 mM 48 hrs, 4-day adult
 (372)
Rotenone 2 μg 12 hrs, larvae L3
 (422)
Rotenone 8 μg 12 hrs, larvae L3
 (742)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Treatment   Expression Level
extended cold, 4-day adult
 (183)
cold shock, 4-day adult
 (116)
heat shock, 4-day adult
 (400)
Cadmium 50 mM 6 hrs, larvae L3
 (420)
Cadmium 50 mM 12 hrs, larvae L3
 (164)
Cadmium 50 mM 48 hrs, 4-day adult
 (386)
Cadmium 100 mM 48 hrs, 4-day adult
 (194)
Copper 0.5 mM 12 hrs, larvae L3
 (245)
Copper 15 mM 48 hrs, 4-day adult
 
 88
Zinc 5 mM 12 hrs, larvae L3
 (174)
Zinc 4.5 mM 48 hrs, 4-day adult
 (111)
Ethanol 2.5% 3 hrs, larvae L3
 (481)
Ethanol 5% 3 hrs, larvae L3
 (414)
Ethanol 10% 3 hrs, larvae L3
 (473)
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 (405)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 (190)
Caffeine 25 mg/ml 48 hrs, 4-day adult
 (130)
Paraquat 5 mM 48 hrs, 4-day adult
 (324)
Paraquat 10 mM 48 hrs, 4-day adult
 (372)
Rotenone 2 μg 12 hrs, larvae L3
 (422)
Rotenone 8 μg 12 hrs, larvae L3
 (742)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Treatment   Expression Level
extended cold, 4-day adult
 
 183
cold shock, 4-day adult
 
 116
heat shock, 4-day adult
 
 400
Cadmium 50 mM 6 hrs, larvae L3
 
 420
Cadmium 50 mM 12 hrs, larvae L3
 
 164
Cadmium 50 mM 48 hrs, 4-day adult
 
 386
Cadmium 100 mM 48 hrs, 4-day adult
 
 194
Copper 0.5 mM 12 hrs, larvae L3
 
 245
Copper 15 mM 48 hrs, 4-day adult
 
 88
Zinc 5 mM 12 hrs, larvae L3
 
 174
Zinc 4.5 mM 48 hrs, 4-day adult
 
 111
Ethanol 2.5% 3 hrs, larvae L3
 
 481
Ethanol 5% 3 hrs, larvae L3
 
 414
Ethanol 10% 3 hrs, larvae L3
 
 473
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 405
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 190
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 130
Paraquat 5 mM 48 hrs, 4-day adult
 
 324
Paraquat 10 mM 48 hrs, 4-day adult
 
 372
Rotenone 2 μg 12 hrs, larvae L3
 
 422
Rotenone 8 μg 12 hrs, larvae L3
 
 742
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Treatment   Expression Level
extended cold, 4-day adult
 
 183
cold shock, 4-day adult
 
 116
heat shock, 4-day adult
 
 400
Cadmium 50 mM 6 hrs, larvae L3
 
 420
Cadmium 50 mM 12 hrs, larvae L3
 
 164
Cadmium 50 mM 48 hrs, 4-day adult
 
 386
Cadmium 100 mM 48 hrs, 4-day adult
 
 194
Copper 0.5 mM 12 hrs, larvae L3
 
 245
Copper 15 mM 48 hrs, 4-day adult
 
 88
Zinc 5 mM 12 hrs, larvae L3
 
 174
Zinc 4.5 mM 48 hrs, 4-day adult
 
 111
Ethanol 2.5% 3 hrs, larvae L3
 
 481
Ethanol 5% 3 hrs, larvae L3
 
 414
Ethanol 10% 3 hrs, larvae L3
 
 473
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 405
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 190
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 130
Paraquat 5 mM 48 hrs, 4-day adult
 
 324
Paraquat 10 mM 48 hrs, 4-day adult
 
 372
Rotenone 2 μg 12 hrs, larvae L3
 
 422
Rotenone 8 μg 12 hrs, larvae L3
 
 742
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to Moderate expression
Treatment   Expression Level
extended cold, 4-day adult
 (183)
cold shock, 4-day adult
 (116)
heat shock, 4-day adult
 (400)
Cadmium 50 mM 6 hrs, larvae L3
 (420)
Cadmium 50 mM 12 hrs, larvae L3
 (164)
Cadmium 50 mM 48 hrs, 4-day adult
 (386)
Cadmium 100 mM 48 hrs, 4-day adult
 (194)
Copper 0.5 mM 12 hrs, larvae L3
 (245)
Copper 15 mM 48 hrs, 4-day adult
 (88)
Zinc 5 mM 12 hrs, larvae L3
 (174)
Zinc 4.5 mM 48 hrs, 4-day adult
 (111)
Ethanol 2.5% 3 hrs, larvae L3
 (481)
Ethanol 5% 3 hrs, larvae L3
 (414)
Ethanol 10% 3 hrs, larvae L3
 (473)
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 (405)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 (190)
Caffeine 25 mg/ml 48 hrs, 4-day adult
 (130)
Paraquat 5 mM 48 hrs, 4-day adult
 (324)
Paraquat 10 mM 48 hrs, 4-day adult
 (372)
Rotenone 2 μg 12 hrs, larvae L3
 (422)
Rotenone 8 μg 12 hrs, larvae L3
 (742)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Treatment   Expression Level
extended cold, 4-day adult
 (183)
cold shock, 4-day adult
 116
heat shock, 4-day adult
 (400)
Cadmium 50 mM 6 hrs, larvae L3
 (420)
Cadmium 50 mM 12 hrs, larvae L3
 (164)
Cadmium 50 mM 48 hrs, 4-day adult
 (386)
Cadmium 100 mM 48 hrs, 4-day adult
 (194)
Copper 0.5 mM 12 hrs, larvae L3
 (245)
Copper 15 mM 48 hrs, 4-day adult
 
 88
Zinc 5 mM 12 hrs, larvae L3
 (174)
Zinc 4.5 mM 48 hrs, 4-day adult
 111
Ethanol 2.5% 3 hrs, larvae L3
 (481)
Ethanol 5% 3 hrs, larvae L3
 (414)
Ethanol 10% 3 hrs, larvae L3
 (473)
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 (405)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 (190)
Caffeine 25 mg/ml 48 hrs, 4-day adult
 130
Paraquat 5 mM 48 hrs, 4-day adult
 (324)
Paraquat 10 mM 48 hrs, 4-day adult
 (372)
Rotenone 2 μg 12 hrs, larvae L3
 (422)
Rotenone 8 μg 12 hrs, larvae L3
 (742)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Treatment   Expression Level
extended cold, 4-day adult
 
 183
cold shock, 4-day adult
 
 116
heat shock, 4-day adult
 
 400
Cadmium 50 mM 6 hrs, larvae L3
 
 420
Cadmium 50 mM 12 hrs, larvae L3
 
 164
Cadmium 50 mM 48 hrs, 4-day adult
 
 386
Cadmium 100 mM 48 hrs, 4-day adult
 
 194
Copper 0.5 mM 12 hrs, larvae L3
 
 245
Copper 15 mM 48 hrs, 4-day adult
 
 88
Zinc 5 mM 12 hrs, larvae L3
 
 174
Zinc 4.5 mM 48 hrs, 4-day adult
 
 111
Ethanol 2.5% 3 hrs, larvae L3
 
 481
Ethanol 5% 3 hrs, larvae L3
 
 414
Ethanol 10% 3 hrs, larvae L3
 
 473
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 405
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 190
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 130
Paraquat 5 mM 48 hrs, 4-day adult
 
 324
Paraquat 10 mM 48 hrs, 4-day adult
 
 372
Rotenone 2 μg 12 hrs, larvae L3
 
 422
Rotenone 8 μg 12 hrs, larvae L3
 
 742
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Treatment   Expression Level
extended cold, 4-day adult
 
 
cold shock, 4-day adult
 
 
heat shock, 4-day adult
 
 
Cadmium 50 mM 6 hrs, larvae L3
 
 
Cadmium 50 mM 12 hrs, larvae L3
 
 
Cadmium 50 mM 48 hrs, 4-day adult
 
 
Cadmium 100 mM 48 hrs, 4-day adult
 
 
Copper 0.5 mM 12 hrs, larvae L3
 
 
Copper 15 mM 48 hrs, 4-day adult
 
 
Zinc 5 mM 12 hrs, larvae L3
 
 
Zinc 4.5 mM 48 hrs, 4-day adult
 
 
Ethanol 2.5% 3 hrs, larvae L3
 
 
Ethanol 5% 3 hrs, larvae L3
 
 
Ethanol 10% 3 hrs, larvae L3
 
 
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 
Paraquat 5 mM 48 hrs, 4-day adult
 
 
Paraquat 10 mM 48 hrs, 4-day adult
 
 
Rotenone 2 μg 12 hrs, larvae L3
 
 
Rotenone 8 μg 12 hrs, larvae L3
 
 

hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Sterility
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
hide Classical Alleles ( 29 )
For All Classical Alleles Show

Allele of blwClassMutagenStocksKnown lesion
blw12 Yes
blwk002122 Yes
blwKG058932 --
blwEY081881 --
blwk044091 Yes
blwNP2316
1 --
blwNP2527
1 --
blwNP2718
1 --
blw014100 Yes
blw02-090 --
blw02-100 --
blw02-130 --
blw02847a0 --
blw03-250 --
blw039720 Yes
blw050090 --
blw056040 --
blw074630 --
blw08-140 --
blw08-150 --
blw08-240 --
blw10-020 --
blw10-030 --
blw30-160 --
blw30-220 --
blwA2-2-270 Yes
blwDG06809
0 --
blwEP11150 --
blwEP25260 --
hide Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show

Allele of blwClassMutagenStocksKnown lesion
blwGD110302 Yes
blwJF028961 Yes
hide Aneuploid Aberrations
Disrupted in
Not disrupted in
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
UAS construct
Insertions
Type of insertions
Name
Expression data
insertion of mobile activating element
insertion of enhancer trap binary system
miscellaneous insertions
hide Gene Ontology: Function, Process & Cellular Component ( 14 unique terms )
hide Terms Based on Experimental Evidence ( 6 terms )
Molecular Function ( 0 terms)
Biological Process
CV term
References
inferred from mutant phenotype
inferred from mutant phenotype
Cellular Component
CV term
References
inferred from direct assay
hide Terms Based on Predictions or Assertions ( 8 terms )
Molecular Function
CV term
References
inferred from sequence or structural similarity with UniProtKB:P25705
non-traceable author statement
Biological Process
CV term
References
inferred from sequence or structural similarity with UniProtKB:P25705
non-traceable author statement
Cellular Component
CV term
References
hide Sequence Ontology: Class of Gene
hide Interactions & Pathways
hide Summary of Physical Interactions
protein-protein
Interacting group
Assay
References
anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based
experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting
experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting
experimental knowledge based
anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based
experimental knowledge based
anti tag coimmunoprecipitation, peptide massfingerprinting
experimental knowledge based
experimental knowledge based
experimental knowledge based
experimental knowledge based
experimental knowledge based
experimental knowledge based
anti tag coimmunoprecipitation, peptide massfingerprinting
experimental knowledge based
experimental knowledge based
experimental knowledge based
experimental knowledge based
anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based
experimental knowledge based
experimental knowledge based
anti tag coimmunoprecipitation, peptide massfingerprinting
experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting
experimental knowledge based
experimental knowledge based
experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
experimental knowledge based
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
blw allele
Gene
References
hide External Data
Linkouts
BioGRID - A database of protein and genetic interactions
DPiM - DPiM, Drosophila Protein interaction Map
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
hide OrthoDB Orthologs (41) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
Drosophila inclusive ortholog search
Dipteran inclusive ortholog search
Insect inclusive ortholog search
Arthropod inclusive ortholog search
Metazoa inclusive ortholog search
hideOrthologs in Drosophila Species (EOG6H72X5)
Organism
Common Name
Gene
AAA Syntenic Ortholog
Multiple Dmel Genes in this Orthologous Group
Drosophila melanogaster
fruit fly 
 
 
Drosophila simulans
 
Y
 
Drosophila sechellia
 
Y
 
Drosophila erecta
 
Y
 
Drosophila yakuba
 
Y
 
Drosophila ananassae
 
Y
 
Drosophila pseudoobscura pseudoobscura
 
Y
 
Drosophila persimilis
 
Y
 
Drosophila willistoni
 
Y
 
Drosophila virilis
 
Y
 
Drosophila mojavensis
 
Y
 
Drosophila grimshawi
 
Y
 
hideOrthologs in non-Drosophila Dipterans (EOG6TXC15)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Aedes aegypti
Yellow fever mosquito 
 
Anopheles gambiae
Malaria mosquito 
 
Culex quinquefasciatus
Southern house mosquito 
 
hideOrthologs in non-Dipteran Insects (EOG6SQVRT)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Apis mellifera
Western honey bee 
Amel\Atp5a1
 
Nasonia vitripennis
Parasitic wasp 
Nvit\Nasvi2EG009612
 
Acromyrmex echinatior
Panamanian leafcutter ant 
Aech\atpA
 
Atta cephalotes
Leafcutter ant 
Acep\ACEP25038
 
Atta cephalotes
Leafcutter ant 
Acep\ACEP13242
 
Camponotus floridanus
Florida carpenter ant 
Cflo\atpA
 
Harpegnathos saltator
Jerdons jumping ant 
Hsal\atpA
 
Linepithema humile
Argentine ant 
Lhum\LH19336
 
Pogonomyrmex barbatus
Red harvester ant 
Pbar\PB20892
 
Solenopsis invicta
Red fire ant 
Sinv\SINV10691
 
Acyrthosiphon pisum
Pea aphid 
 
Bombyx mori
Silkmoth 
 
Pediculus humanus
Human body louse 
 
Tribolium castaneum
Red flour beetle 
 
hideOrthologs in non-Insect Arthropods (EOG6QBZMJ)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Daphnia pulex
Water flea 
 
Ixodes scapularis
Deer tick 
 
hideOrthologs in non-Arthropod Metazoa (EOG6103QS)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Caenorhabditis elegans
Nematode 
 
Strongylocentrotus purpuratus
Purple sea urchin 
 
Danio rerio
Zebrafish 
 
Xenopus tropicalis
Western clawed frog 
 
Xenopus tropicalis
Western clawed frog 
 
Gallus gallus
Domestic chicken 
 
Gallus gallus
Domestic chicken 
 
Mus musculus
House mouse 
 
Rattus norvegicus
Norway rat 
 
Homo sapiens
Human 
 
hide Human Orthologs (1)
Gene
OMIM
HGNC
hideAAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism
Gene
Drosophila simulans
Drosophila sechellia
Drosophila erecta
Drosophila yakuba
Drosophila ananassae
Drosophila pseudoobscura pseudoobscura
Drosophila persimilis
Drosophila willistoni
Drosophila virilis
Drosophila mojavensis
Drosophila grimshawi
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 14 )
Bloomington
Kyoto
VDRC
hide Genomic Clones ( 1 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 932 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
hide RNAi & Array Information
Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
hide Antibody Information
hide Other Information
hide Discoverer
hide Etymology
hide Identification
hide Relationship to Other Genes
Source for database identity of
Source for database merge of
Source for merge of: blw ATPsyn-α
Source for merge of: blw l(2)03972 l(2)k00212 l(2)01410 ATPsyn-α
Additional comments
hide Other Comments
S2 cells treated with dsRNA generated against this gene show reduced phagocytosis of Candida albicans compared to untreated cells.
RNAi generated by PCR using primers directed to this gene causes a cell growth and viability phenotype when assayed in Kc167 and S2R+ cells.
Identification: One of a collection of genes identified with defective larval growth that extend larval life.
Postmeiotic differentiation defect.
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
MitoDrome - A database of annotated Dmel nuclear genes encoding mitochondrial proteins
  • MTDROME03612
Linkouts
BioGRID - A database of protein and genetic interactions
DPiM - DPiM, Drosophila Protein interaction Map
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
hide Synonyms & Secondary IDs ( 32 )
Reported As
Symbol Synonym
l(2)01410
 
l(2)03972
 
l(2)k00212
ms(2)01504
 
ms(2)Pry58F
 
Name Synonym
ATP SYNTHASE ALPHA
ATP synthase Alpha chain
ATP synthase subunit alpha
ATP synthase subunit α
ATP synthetase α chain
COMPLEX V: alpha chain
F0/F1 ATP synthase Alpha
mitochondrial ATP synthase alpha subunit
mitochondrial ATP synthase subunit alpha of complex V
Mitochondrial ATP synthase subunit B
α-ATP synthase
α subunit of ATP synthase
α subunit of the mitochondrial F1F0 ATPase
Secondary FlyBase IDs
  • FBgn0010487
  • FBgn0010561
  • FBgn0011298
  • FBgn0022274
hide References ( 86 )
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hide Recent research papers ( 7 )
Duboff et al., 2012, Neuron 75(4): 618--632
Tau Promotes Neurodegeneration via DRP1 Mislocalization In Vivo. [FBrf0219271]
Fukuyama et al., 2012, J. Proteomics 75(15): 4610--4619
On-bead tryptic proteolysis: An attractive procedure for LC-MS/MS analysis of the Drosophila caspase 8 protein complex during immune response against bacteria. [FBrf0218992]
Krauchunas et al., 2012, Dev. Biol. 370(1): 125--134
Protein phosphorylation changes reveal new candidates in the regulation of egg activation and early embryogenesis in D. melanogaster. [FBrf0219342]
Malone et al., 2012, Genome Biol. 13(4): r28
Mediation of Drosophila autosomal dosage effects and compensation by network interactions. [FBrf0219684]
Abruzzi et al., 2011, Genes Dev. 25(22): 2374--2386
Drosophila CLOCK target gene characterization: implications for circadian tissue-specific gene expression. [FBrf0216798]
Rees et al., 2011, Mol. Cell. Proteomics 10(6): M110.002386
In Vivo Analysis of Proteomes and Interactomes Using Parallel Affinity Capture (iPAC) Coupled to Mass Spectrometry. [FBrf0213845]
Sun et al., 2011, PLoS ONE 6(4): e18215
Systems-scale analysis reveals pathways involved in cellular response to methamphetamine. [FBrf0213560]
hide Recent reviews (0)
All reviews listed in FlyBase were published before 2011