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Gene Dmel\RpL13

General Information
Symbol	Dmel\RpL13	Species	D. melanogaster
Name	Ribosomal protein L13	Annotation symbol	CG4651
Feature type	protein_coding_gene	FlyBase ID	FBgn0011272
Gene Model Status	Current	Stock availability	1 publicly available
Also Known As	Dmbbc1
Genomic Location
Chromosome (arm)	2L	Recombination map	2-
Cytogenetic map	30F3-30F3	Sequence location	2L:9,967,312..9,968,619 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Ribosomal protein L13 is referred to in FlyBase by the symbol Dmel\RpL13 (CG4651, FBgn0011272). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: structural constituent of ribosome. There is experimental evidence that it is involved in the biological process: mitotic spindle elongation; mitotic spindle organization; centrosome duplication. 3 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. Protein features are: Ribosomal protein L13e; Ribosomal protein L13e, conserved site. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of very high expression. Peak expression observed at stages throughout embryogenesis, during early larval stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: High levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1623836_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of RpL13. Gene sequence location is 2L:9967312..9968619.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2011_10	References Alonso and Santaren, 2006, J. Proteome Res. 5(8): 2025--2032 Clones MIP11288
FB2012_01	Sequence features BKN28033 HFA03416 Transcripts RpL13-RC Controlled Vocabulary Terms centrosome duplication Clones 568837 GM19365 SD03475 GH28552 LD15660 SD21879 GH11501 IP01705 LP05813 522344 GM02753 524932 EN02005 522301 SD14733 SD20544 GM05876 GM30426 SD20550 SD27552 LP09943 IP01706 EN14027 Polypeptides RpL13-PC References Müller et al., 2010, EMBO J. 29(19): 3344--3357
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 30F3-30F3   Limits computationally determined from genome sequence between P{EP}CG5899EP701 and P{EP}CG4747EP594&P{lacW}l(2)k13305k13305
Experimentally Determined Cytological Location
Cytogenetic map Notes References 29E-29F     (Helps, 1994.2.28)
Experimentally Determined Recombination Data
Location	2-
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\RpL13 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.43
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) RpL13-RA FBtr0079888  NM_078806   792   218 RpL13-RB FBtr0100164  NM_001038802   774   218 RpL13-RC FBtr0310482     1160   218
Additional Transcript Data & Comments
Reported size (kB)	0.95 (northern blot) (Helps et al., 1995)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein RpL13-PA   FBpp0079484   25.0   218   11.64     NP_523530   AAF52842 RpL13-PB   FBpp0099517   25.0   218   11.64     NP_001033891   ABC65888 RpL13-PC   FBpp0302626   25.0   218   11.64
Additional Polypeptide Data & Comments
Reported size (kDa)	218 (aa) (Helps et al., 1995)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Ribosomal protein L13e, conserved site (IPR018256) Ribosomal protein L13e (IPR001380)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA246396   AA263565   AA263863   AA264329   AA433209   AA440570   AA440786   AA441007   AA536333   AA539171   AA539388   AA540933   AA694707   AA694950   AA695398   AA695852   AA695998   AA696598   AA696609   AA697142   AA736139   AA801637   AA801703   AA801751   AA802040   AA802119   AA802222   AA802592   AA802731   AA803264   AA803332   AA803529   AA803544   AA803882   AA803932   AA804091   AA817376   AA820248   AA820296   AA820441   AA820737   AA821107   AA821144   AA821185   AA821193   AA940636   AA941200   AA941258   AA941546   AA941945   AA942203   AA942248   AA949120   AA950575   AA950915   AA978491   AA979127   AA979367   AA979483   AE014134 AAF52842   AE014134 ABC65888   AI061889   AI062354   AI062500   AI062556   AI063029   AI063315   AI064129   AI064164   AI064302   AI064428   AI064656   AI106612   AI106737   AI106989   AI107301   AI107340   AI107910   AI108274   AI109442   AI109481   AI109827   AI110210   AI134130   AI134255   AI134390   AI134444   AI135033   AI135371   AI135546   AI238226   AI238610   AI238955   AI257037   AI257443   AI257670   AI258073   AI258978   AI260067   AI260234   AI260843   AI261100   AI292778   AI292825   AI293371   AI294298   AI294329   AI294358   AI294864   AI295479   AI296125   AI297301   AI297380   AI386925   AI387343   AI387442   AI388765   AI388864   AI388989   AI389440   AI389628   AI389647   AI403376   AI403540   AI403872   AI404711   AI405305   AI405776   AI406124   AI406215   AI456839   AI512177   AI512191   AI512333   AI512845   AI513258   AI513630   AI514173   AI514559   AI514563   AI514976   AI515525   AI515799   AI517227   AI517247   AI517549   AI518742   AI518811   AI519939   AI520403   AI520490   AI531918   AI531931   AI532107   AI532808   AI533090   AI533847   AI546143   AY231817   AY232046   BF491782   BF497747   BF503164   BF504061   BG635887   BG635920   BG635930   BG635970   BG636178   BG636290   BG636520   BG636572   BG636838   BG636845   BG636911   BG637432   BG637482   BG638140   BG638146   BG638709   BG640370   BG640507   BG640520   BG640962   BG641059   BG641061   BG641190   BG641344   BG641437   BG641450   BI141849   BI162173   BI162267   BI162268   BI163969   BI164017   BI164554   BI165109   BI165664   BI165719   BI166967   BI168008   BI168044   BI169093   BI170364   BI170382   BI170494   BI170664   BI170859   BI171175   BI171363   BI171857   BI171964   BI172204   BI172270   BI172287   BI172314   BI172440   BI173535   BI173576   BI212150   BI213438   BI213601   BI215201   BI215255   BI216006   BI228188   BI229657   BI229909   BI229967   BI230086   BI230090   BI230125   BI230137   BI230150   BI230193   BI230243   BI230976   BI231142   BI231542   BI234254   BI234848   BI235617   BI236021   BI236042   BI236096   BI236269   BI236484   BI237883   BI238250   BI239252   BI239749   BI240204   BI242052   BI242442   BI351661   BI351665   BI351780   BI351805   BI352006   BI352156   BI352236   BI352248   BI352303   BI352434   BI352445   BI352459   BI352909   BI352920   BI353030   BI353329   BI353348   BI353408   BI353436   BI353463   BI353552   BI353618   BI353627   BI353746   BI353785   BI353806   BI353847   BI354028   BI354096   BI354797   BI354902   BI354981   BI355096   BI355261   BI355337   BI355412   BI355492   BI355581   BI355592   BI355620   BI355651   BI355704   BI355821   BI356822   BI357679   BI357774   BI362220   BI362280   BI362671   BI363001   BI364073   BI365155   BI366454   BI367467   BI368675   BI369167   BI369321   BI370433   BI370522   BI371429   BI371739   BI371931   BI373146   BI373306   BI373649   BI374289   BI374582   BI375759   BI483277   BI483607   BI484666   BI485622   BI485627   BI486530   BI487019   BI563808   BI564053   BI564157   BI564327   BI564348   BI564349   BI564383   BI564687   BI565129   BI565218   BI566262   BI566290   BI566293   BI566617   BI566722   BI566726   BI566967   BI567006   BI567064   BI567367   BI567513   BI567541   BI567795   BI567868   BI568081   BI568369   BI568393   BI568699   BI570582   BI570725   BI572303   BI574501   BI574685   BI574707   BI574853   BI575034   BI575051   BI575275   BI575511   BI575609   BI575740   BI576108   BI576211   BI578743   BI579204   BI579936   BI580325   BI580897   BI581039   BI581040   BI582594   BI582717   BI582737   BI582793   BI582914   BI582952   BI583041   BI583166   BI583245   BI583760   BI583868   BI584099   BI584581   BI585132   BI585645   BI585741   BI586039   BI586195   BI586381   BI586506   BI586786   BI587076   BI587447   BI587593   BI587601   BI587935   BI588325   BI588334   BI588349   BI588436   BI588557   BI588605   BI588773   BI588858   BI589196   BI590382   BI590583   BI590934   BI591012   BI591376   BI591441   BI591908   BI592195   BI592378   BI592497   BI592899   BI592903   BI592974   BI593048   BI593439   BI604791   BI604952   BI604954   BI606151   BI606222   BI606466   BI606646   BI606929   BI607060   BI607141   BI607318   BI607638   BI607683   BI607839   BI608121   BI608331   BI608565   BI608795   BI609070   BI609214   BI610159   BI611499   BI611880   BI612463   BI613157   BI613383   BI614052   BI614497   BI614935   BI615534   BI615586   BI615679   BI616564   BI616711   BI616971   BI617159   BI617239   BI617325   BI617778   BI618242   BI618356   BI618394   BI618404   BI618682   BI619087   BI619506   BI620176   BI620867   BI621213   BI621282   BI621716   BI621947   BI622681   BI622870   BI622947   BI623149   BI623239   BI623580   BI623945   BI624043   BI624439   BI625356   BI625476   BI626768   BI626986   BI627038   BI627195   BI627386   BI627453   BI627471   BI627833   BI627874   BI628194   BI628456   BI628659   BI629444   BI629694   BI630033   BI630118   BI630439   BI630451   BI630818   BI630850   BI631249   BI631839   BI631946   BI632318   BI632421   BI632510   BI632710   BI632774   BI633048   BI633129   BI633440   BI633444   BI633460   BI633595   BI633814   BI633886   BI633978   BI634080   BI634250   BI634275   BI634288   BI634310   BI634321   BI634814   BI635131   BI635183   BI635249   BI635342   BI635418   BI635624   BI635951   BI636068   BI636424   BI636708   BI636781   BI636912   BI637007   BI637312   BI637326   BI637745   BI637830   BI637951   BI638293   BI638297   BI639142   BI639267   BI639322   BI639974   BI640031   BI640807   BI640811   BI641036   BI641957   BP543731   BP543732   BP548924   BP549523   BP549734   BP549735   BP549929   BP549930   BP550342   BP551685   BP551686   BP551816   BP552288   BP552289   BP553064   BP553065   BP553091   BP553702   BP553703   BP553812   BP553813   BP554480   BP554481   BP554506   BP554507   BP555133   BP555134   BP555571   BP555572   BP555699   BP555700   BP558514   BP558515   BQ103560   BT053725   BT128812   BX006584   BX006931   BX007859   BX010313   BX010602   BX011286   BX011356   BX011895   BX013455   BX013479   BX013566   BX013608   BX014877   BX015527   BX017152   BX018929   BX019442   BX020667   BX022642   BX024067   BX024988   BX025649   BX025910   BX027214   BX027905   BX028104   BX030032   BX032564   BX036028   BX041185   BX042786   BX044252   BX044613   BX045311   BX046845   BX046988   BX047489   BX047588   BX047659   BX048815   BX048898   BX049592   BX050068   BX050953   BX051069   BX051624   BX051897   BX053823   BX055215   BX055729   BX056964   BX056970   BX057039   BX057224   BX057274   BX057359   BX058953   BX059424   BX066025   BX068078   BX068294   BX068308   BX069476   BX070695   BX071292   BX072086   CA807185   CK086519   CK131698   CK132183   CK604273   CK604274   CK604443   CK604444   CK604872   CK604873   CK604908   CK604911   CK604912   CK605012   CK605091   CK605092   CK605526   CK605527   CK657046   CK657561   CK657840   CK658246   CK658271   CK658449   CK658500   CK658814   CK658932   CK659063   CK659143   CK660601   CK661020   CO152839   CO152999   CO153218   CO153296   CO153334   CO153379   CO153442   CO153451   CO153542   CO153593   CO153679   CO153803   CO153982   CO154023   CO154102   CO155066   CO155393   CO156732   CO157002   CO157036   CO157103   CO183223   CO183688   CO184588   CO191164   CO192822   CO194396   CO262132   CO271693   CO273451   CO290054   CO290503   CO296079   CO297081   CO297237   CO308389   CO323415   CO332635   CO335461   CO336091   CO336197   CO336357   CO336399   CO336708   CO336919   CO337199   CO337946   CO338636   CO338730   CO345477   EC051759   EC064417   EC069126   EC072999   EC075674   EC081026   EC081931   EC081932   EC083399   EC087149   EC087308   EC091194   EC196357   EC202671   EC203645   EC231646   EC232132   EC235068   EC241011   EC242284   EC243496   EC249554   EC251169   EC258655   EC260852   EC260857   EC260882   EC260921   EC261780   EC261973   EC262296   EC262327   EC262332   EC262725   EC262933   EC263450   EC263637   EC263704   EC263867   EC264555   EC264584   EC264933   EC265055   EC265370   EC265402   EC265430   EC265820   EC265856   EC266086   EC266106   EC266745   EC266750   EC266829   EC267160   EC267214   EC267271   EC267834   EC267986   EL869616   EL869617   EL869618   EL869619   EL869620   EL869621   EL869622   EL869623   EL870371   EL870886   EL870887   EL871566   EL871678   EL871798   EL871930   EL872274   EL872275   EL872399   EL872400   EL876691   EL876692   EL881128   EL881555   EL883138   EL883139   EL883379   EL883380   EL883447   EL883497   EL886459   EV575823   EV576062   EV576161   EV577331   EV577891   EV579002   EV579615   EV580770   EV581176   EV581254   EV581313   EV581709   EV583226   EV584212   EV585262   EV585875   EV585902   EV587296   EV588878   EV589328   EV589366   EV589497   EV590240   EV590715   EV590716   EV592408   EV593092   EV593262   EV593683   EV595081   EV595166   EV596964   EV597070   EV597981   EV598042   EV598764   EV598773   GH955681   GH961162   GH961448   GH962121   GH977493   X77926 CAA54898
UniProtKB/Swiss-Prot	P41126
UniProtKB/TrEMBL
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
northern blot Stage Tissue/Position (including subcellular localization) Reference embryonic stage -- adult stage     (Helps et al., 1995)
Additional Descriptive Data
	RpL13 transcripts are detected at all stages of development on northern blots with the highest levels in 4-24hr embryos. (Helps et al., 1995)
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 7 of adulthood -- day 49 of adulthood   adult heart   (Cammarato et al., 2011)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0011272    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0011272 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of very high expression. Peak expression observed at stages throughout embryogenesis, during early larval stages, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0011272 expression level Developmental Stage   Expression Level embryo 00-02hr    101393 embryo 02-04hr    142232 embryo 04-06hr    128590 embryo 06-08hr    147320 embryo 08-10hr    157069 embryo 10-12hr    187258 embryo 12-14hr    100664 embryo 14-16hr    175935 embryo 16-18hr    149563 embryo 18-20hr    148571 embryo 20-22hr    159532 embryo 22-24hr    122059 larva L1    209588 larva L2    143829 larva L3 12hr old    126265 larva L3 puffstage 1-2    86557 larva L3 puffstage 3-6    90989 larva L3 puffstage 7-9    89976 white prepupae new    70806 white prepupae 12hr    63614 white prepupae 24hr    65912 pupae 2d postWPP    58151 pupae 3d postWPP    43738 pupae 4d postWPP    69786 adult male 01day    47256 adult male 05day    52148 adult male 30day    59021 adult female 01day    131475 adult female 05day    99161 adult female 30day    119142 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (101393) embryo 02-04hr  (142232) embryo 04-06hr  (128590) embryo 06-08hr  (147320) embryo 08-10hr  (157069) embryo 10-12hr  (187258) embryo 12-14hr  (100664) embryo 14-16hr  (175935) embryo 16-18hr  (149563) embryo 18-20hr  (148571) embryo 20-22hr  (159532) embryo 22-24hr  (122059) larva L1  (209588) larva L2  (143829) larva L3 12hr old  (126265) larva L3 puffstage 1-2  (86557) larva L3 puffstage 3-6  (90989) larva L3 puffstage 7-9  (89976) white prepupae new  (70806) white prepupae 12hr  (63614) white prepupae 24hr  (65912) pupae 2d postWPP  (58151) pupae 3d postWPP  (43738) pupae 4d postWPP  (69786) adult male 01day  (47256) adult male 05day  (52148) adult male 30day  (59021) adult female 01day  (131475) adult female 05day  (99161) adult female 30day  (119142) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (101393) embryo 02-04hr  (142232) embryo 04-06hr  (128590) embryo 06-08hr  (147320) embryo 08-10hr  (157069) embryo 10-12hr  (187258) embryo 12-14hr  (100664) embryo 14-16hr  (175935) embryo 16-18hr  (149563) embryo 18-20hr  (148571) embryo 20-22hr  (159532) embryo 22-24hr  (122059) larva L1  (209588) larva L2  (143829) larva L3 12hr old  (126265) larva L3 puffstage 1-2  (86557) larva L3 puffstage 3-6  (90989) larva L3 puffstage 7-9  (89976) white prepupae new  (70806) white prepupae 12hr  (63614) white prepupae 24hr  (65912) pupae 2d postWPP  (58151) pupae 3d postWPP  (43738) pupae 4d postWPP  (69786) adult male 01day  (47256) adult male 05day  (52148) adult male 30day  (59021) adult female 01day  (131475) adult female 05day  (99161) adult female 30day  (119142) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (101393) embryo 02-04hr  (142232) embryo 04-06hr  (128590) embryo 06-08hr  (147320) embryo 08-10hr  (157069) embryo 10-12hr  (187258) embryo 12-14hr  (100664) embryo 14-16hr  (175935) embryo 16-18hr  (149563) embryo 18-20hr  (148571) embryo 20-22hr  (159532) embryo 22-24hr  (122059) larva L1  (209588) larva L2  (143829) larva L3 12hr old  (126265) larva L3 puffstage 1-2  (86557) larva L3 puffstage 3-6  (90989) larva L3 puffstage 7-9  (89976) white prepupae new  (70806) white prepupae 12hr  (63614) white prepupae 24hr  (65912) pupae 2d postWPP  (58151) pupae 3d postWPP  (43738) pupae 4d postWPP  (69786) adult male 01day  (47256) adult male 05day  (52148) adult male 30day  (59021) adult female 01day  (131475) adult female 05day  (99161) adult female 30day  (119142) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    101393 embryo 02-04hr    142232 embryo 04-06hr    128590 embryo 06-08hr    147320 embryo 08-10hr    157069 embryo 10-12hr    187258 embryo 12-14hr    100664 embryo 14-16hr    175935 embryo 16-18hr    149563 embryo 18-20hr    148571 embryo 20-22hr    159532 embryo 22-24hr    122059 larva L1    209588 larva L2    143829 larva L3 12hr old    126265 larva L3 puffstage 1-2    86557 larva L3 puffstage 3-6    90989 larva L3 puffstage 7-9    89976 white prepupae new    70806 white prepupae 12hr    63614 white prepupae 24hr    65912 pupae 2d postWPP    58151 pupae 3d postWPP    43738 pupae 4d postWPP    69786 adult male 01day    47256 adult male 05day    52148 adult male 30day    59021 adult female 01day    131475 adult female 05day    99161 adult female 30day    119142 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0011272 expression level Developmental Stage   Expression Level embryo 00-02hr    101393 embryo 02-04hr    142232 embryo 04-06hr    128590 embryo 06-08hr    147320 embryo 08-10hr    157069 embryo 10-12hr    187258 embryo 12-14hr    100664 embryo 14-16hr    175935 embryo 16-18hr    149563 embryo 18-20hr    148571 embryo 20-22hr    159532 embryo 22-24hr    122059 larva L1    209588 larva L2    143829 larva L3 12hr old    126265 larva L3 puffstage 1-2    86557 larva L3 puffstage 3-6    90989 larva L3 puffstage 7-9    89976 white prepupae new    70806 white prepupae 12hr    63614 white prepupae 24hr    65912 pupae 2d postWPP    58151 pupae 3d postWPP    43738 pupae 4d postWPP    69786 adult male 01day    47256 adult male 05day    52148 adult male 30day    59021 adult female 01day    131475 adult female 05day    99161 adult female 30day    119142 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (101393) embryo 02-04hr  (142232) embryo 04-06hr  (128590) embryo 06-08hr  (147320) embryo 08-10hr  (157069) embryo 10-12hr  (187258) embryo 12-14hr  (100664) embryo 14-16hr  (175935) embryo 16-18hr  (149563) embryo 18-20hr  (148571) embryo 20-22hr  (159532) embryo 22-24hr  (122059) larva L1  (209588) larva L2  (143829) larva L3 12hr old  (126265) larva L3 puffstage 1-2  (86557) larva L3 puffstage 3-6  (90989) larva L3 puffstage 7-9  (89976) white prepupae new  (70806) white prepupae 12hr  (63614) white prepupae 24hr  (65912) pupae 2d postWPP  (58151) pupae 3d postWPP  (43738) pupae 4d postWPP  (69786) adult male 01day  (47256) adult male 05day  (52148) adult male 30day  (59021) adult female 01day  (131475) adult female 05day  (99161) adult female 30day  (119142) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (101393) embryo 02-04hr  (142232) embryo 04-06hr  (128590) embryo 06-08hr  (147320) embryo 08-10hr  (157069) embryo 10-12hr  (187258) embryo 12-14hr  (100664) embryo 14-16hr  (175935) embryo 16-18hr  (149563) embryo 18-20hr  (148571) embryo 20-22hr  (159532) embryo 22-24hr  (122059) larva L1  (209588) larva L2  (143829) larva L3 12hr old  (126265) larva L3 puffstage 1-2  (86557) larva L3 puffstage 3-6  (90989) larva L3 puffstage 7-9  (89976) white prepupae new  (70806) white prepupae 12hr  (63614) white prepupae 24hr  (65912) pupae 2d postWPP  (58151) pupae 3d postWPP  (43738) pupae 4d postWPP  (69786) adult male 01day  (47256) adult male 05day  (52148) adult male 30day  (59021) adult female 01day  (131475) adult female 05day  (99161) adult female 30day  (119142) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (101393) embryo 02-04hr  (142232) embryo 04-06hr  (128590) embryo 06-08hr  (147320) embryo 08-10hr  (157069) embryo 10-12hr  (187258) embryo 12-14hr  (100664) embryo 14-16hr  (175935) embryo 16-18hr  (149563) embryo 18-20hr  (148571) embryo 20-22hr  (159532) embryo 22-24hr  (122059) larva L1  (209588) larva L2  (143829) larva L3 12hr old  (126265) larva L3 puffstage 1-2  (86557) larva L3 puffstage 3-6  (90989) larva L3 puffstage 7-9  (89976) white prepupae new  (70806) white prepupae 12hr  (63614) white prepupae 24hr  (65912) pupae 2d postWPP  (58151) pupae 3d postWPP  (43738) pupae 4d postWPP  (69786) adult male 01day  (47256) adult male 05day  (52148) adult male 30day  (59021) adult female 01day  (131475) adult female 05day  (99161) adult female 30day  (119142) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    101393 embryo 02-04hr    142232 embryo 04-06hr    128590 embryo 06-08hr    147320 embryo 08-10hr    157069 embryo 10-12hr    187258 embryo 12-14hr    100664 embryo 14-16hr    175935 embryo 16-18hr    149563 embryo 18-20hr    148571 embryo 20-22hr    159532 embryo 22-24hr    122059 larva L1    209588 larva L2    143829 larva L3 12hr old    126265 larva L3 puffstage 1-2    86557 larva L3 puffstage 3-6    90989 larva L3 puffstage 7-9    89976 white prepupae new    70806 white prepupae 12hr    63614 white prepupae 24hr    65912 pupae 2d postWPP    58151 pupae 3d postWPP    43738 pupae 4d postWPP    69786 adult male 01day    47256 adult male 05day    52148 adult male 30day    59021 adult female 01day    131475 adult female 05day    99161 adult female 30day    119142 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0011272    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0011272 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0011272 expression level Tissue   Expression Level Larval Central Nervous System    2013.925 Larval Midgut    3456.5 Larval Hindgut    3218.3 Larval Malpighian Tubules    3980.1 Larval Fat Body    6959.2 Larval Salivary Gland    5927 Larval Trachea    5338.8 Larval Carcass    3644.35 Adult Head    4111.5 Adult Eye    6011.75 Adult Brain    2650.4 Adult Thoracic-Abdominal Ganglion    3607.4 Adult Crop    5093.8 Adult Midgut    4624.6 Adult Hindgut    4151.2 Adult Malpighian Tubules    3686.3 Adult Fat Body    4120.1 Adult Salivary Gland    7504.7 Adult Heart    5556.925 Adult VirginFemale Spermatheca    3982.1 Adult InseminatedFemale Spermatheca    3907.3 Adult Ovary    2917.9 Adult Testis    674.7 Adult Male Accessory Gland    7924.5 Adult Carcass    4681 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (2013.925) Larval Midgut  (3456.5) Larval Hindgut  (3218.3) Larval Malpighian Tubules  (3980.1) Larval Fat Body  (6959.2) Larval Salivary Gland  (5927) Larval Trachea  (5338.8) Larval Carcass  (3644.35) Adult Head  (4111.5) Adult Eye  (6011.75) Adult Brain  (2650.4) Adult Thoracic-Abdominal Ganglion  (3607.4) Adult Crop  (5093.8) Adult Midgut  (4624.6) Adult Hindgut  (4151.2) Adult Malpighian Tubules  (3686.3) Adult Fat Body  (4120.1) Adult Salivary Gland  (7504.7) Adult Heart  (5556.925) Adult VirginFemale Spermatheca  (3982.1) Adult InseminatedFemale Spermatheca  (3907.3) Adult Ovary  (2917.9) Adult Testis  (674.7) Adult Male Accessory Gland  (7924.5) Adult Carcass  (4681) Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System  (2013.925) Larval Midgut  (3456.5) Larval Hindgut  (3218.3) Larval Malpighian Tubules  (3980.1) Larval Fat Body  (6959.2) Larval Salivary Gland  (5927) Larval Trachea  (5338.8) Larval Carcass  (3644.35) Adult Head  (4111.5) Adult Eye  (6011.75) Adult Brain  (2650.4) Adult Thoracic-Abdominal Ganglion  (3607.4) Adult Crop  (5093.8) Adult Midgut  (4624.6) Adult Hindgut  (4151.2) Adult Malpighian Tubules  (3686.3) Adult Fat Body  (4120.1) Adult Salivary Gland  (7504.7) Adult Heart  (5556.925) Adult VirginFemale Spermatheca  (3982.1) Adult InseminatedFemale Spermatheca  (3907.3) Adult Ovary  (2917.9) Adult Testis    674.7 Adult Male Accessory Gland  (7924.5) Adult Carcass  (4681) Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    2013.925 Larval Midgut    3456.5 Larval Hindgut    3218.3 Larval Malpighian Tubules    3980.1 Larval Fat Body    6959.2 Larval Salivary Gland    5927 Larval Trachea    5338.8 Larval Carcass    3644.35 Adult Head    4111.5 Adult Eye    6011.75 Adult Brain    2650.4 Adult Thoracic-Abdominal Ganglion    3607.4 Adult Crop    5093.8 Adult Midgut    4624.6 Adult Hindgut    4151.2 Adult Malpighian Tubules    3686.3 Adult Fat Body    4120.1 Adult Salivary Gland    7504.7 Adult Heart    5556.925 Adult VirginFemale Spermatheca    3982.1 Adult InseminatedFemale Spermatheca    3907.3 Adult Ovary    2917.9 Adult Testis    674.7 Adult Male Accessory Gland    7924.5 Adult Carcass    4681 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0011272 expression level Tissue   Expression Level Larval Central Nervous System    2013.925 Larval Midgut    3456.5 Larval Hindgut    3218.3 Larval Malpighian Tubules    3980.1 Larval Fat Body    6959.2 Larval Salivary Gland    5927 Larval Trachea    5338.8 Larval Carcass    3644.35 Adult Head    4111.5 Adult Eye    6011.75 Adult Brain    2650.4 Adult Thoracic-Abdominal Ganglion    3607.4 Adult Crop    5093.8 Adult Midgut    4624.6 Adult Hindgut    4151.2 Adult Malpighian Tubules    3686.3 Adult Fat Body    4120.1 Adult Salivary Gland    7504.7 Adult Heart    5556.925 Adult VirginFemale Spermatheca    3982.1 Adult InseminatedFemale Spermatheca    3907.3 Adult Ovary    2917.9 Adult Testis    674.7 Adult Male Accessory Gland    7924.5 Adult Carcass    4681 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (2013.925) Larval Midgut  (3456.5) Larval Hindgut  (3218.3) Larval Malpighian Tubules  (3980.1) Larval Fat Body  (6959.2) Larval Salivary Gland  (5927) Larval Trachea  (5338.8) Larval Carcass  (3644.35) Adult Head  (4111.5) Adult Eye  (6011.75) Adult Brain  (2650.4) Adult Thoracic-Abdominal Ganglion  (3607.4) Adult Crop  (5093.8) Adult Midgut  (4624.6) Adult Hindgut  (4151.2) Adult Malpighian Tubules  (3686.3) Adult Fat Body  (4120.1) Adult Salivary Gland  (7504.7) Adult Heart  (5556.925) Adult VirginFemale Spermatheca  (3982.1) Adult InseminatedFemale Spermatheca  (3907.3) Adult Ovary  (2917.9) Adult Testis  674.7 Adult Male Accessory Gland  (7924.5) Adult Carcass  (4681) Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System  (2013.925) Larval Midgut  (3456.5) Larval Hindgut  (3218.3) Larval Malpighian Tubules  (3980.1) Larval Fat Body  (6959.2) Larval Salivary Gland  (5927) Larval Trachea  (5338.8) Larval Carcass  (3644.35) Adult Head  (4111.5) Adult Eye  (6011.75) Adult Brain  (2650.4) Adult Thoracic-Abdominal Ganglion  (3607.4) Adult Crop  (5093.8) Adult Midgut  (4624.6) Adult Hindgut  (4151.2) Adult Malpighian Tubules  (3686.3) Adult Fat Body  (4120.1) Adult Salivary Gland  (7504.7) Adult Heart  (5556.925) Adult VirginFemale Spermatheca  (3982.1) Adult InseminatedFemale Spermatheca  (3907.3) Adult Ovary  (2917.9) Adult Testis    674.7 Adult Male Accessory Gland  (7924.5) Adult Carcass  (4681) Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    2013.925 Larval Midgut    3456.5 Larval Hindgut    3218.3 Larval Malpighian Tubules    3980.1 Larval Fat Body    6959.2 Larval Salivary Gland    5927 Larval Trachea    5338.8 Larval Carcass    3644.35 Adult Head    4111.5 Adult Eye    6011.75 Adult Brain    2650.4 Adult Thoracic-Abdominal Ganglion    3607.4 Adult Crop    5093.8 Adult Midgut    4624.6 Adult Hindgut    4151.2 Adult Malpighian Tubules    3686.3 Adult Fat Body    4120.1 Adult Salivary Gland    7504.7 Adult Heart    5556.925 Adult VirginFemale Spermatheca    3982.1 Adult InseminatedFemale Spermatheca    3907.3 Adult Ovary    2917.9 Adult Testis    674.7 Adult Male Accessory Gland    7924.5 Adult Carcass    4681 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    4111.5   NA  Eye    6011.75   NA  Brain    2650.4   2013.925  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    3607.4   NA  Crop    5093.8   3456.5  Midgut    4624.6   3218.3  Hindgut    4151.2   3980.1  Malpighian Tubules    3686.3   6959.2  Fat Body    4120.1   5927  Salivary Gland    7504.7   NA  Heart    5556.925   5338.8  Trachea    NA   NA  VirginFemale Spermatheca    3982.1   NA  InseminatedFemale Spermatheca    3907.3   NA  Ovary    2917.9   NA  Testis    674.7   NA  Male Accessory Gland    7924.5   3644.35  Carcass    4681 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_22
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0011272 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG4651-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Phenotype manifest in Allele
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of RpL13 Class Mutagen Stocks Known lesion RpL13e02165 1 --
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of RpL13 Class Mutagen Stocks Known lesion RpL13GD11387 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes RpL13KK108033 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD11387} NA P{KK108033} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions P{PTT-GB}DrefCB02226 NA PBac{RB}RpL13e02165 NA insertion of mobile activating element P{GSV1}EP-108EP-108 NA
Gene Ontology: Function, Process & Cellular Component ( 8 unique terms )
Terms Based on Experimental Evidence ( 5 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
centrosome duplication inferred from mutant phenotype (Müller et al., 2010) mitotic spindle elongation inferred from mutant phenotype (Goshima et al., 2007) mitotic spindle organization inferred from mutant phenotype (Goshima et al., 2007)
Cellular Component
CV term Evidence References
lipid particle inferred from direct assay (Cermelli et al., 2006) ribosome inferred from direct assay (Alonso and Santaren, 2006)
Terms Based on Predictions or Assertions ( 4 terms )
Molecular Function
CV term Evidence References
structural constituent of ribosome inferred from sequence or structural similarity with UniProtKB:P41123 (FlyBase, 1992-) non-traceable author statement (Swiss-Prot Project Members, 1995.2.1)
Biological Process
CV term Evidence References
translation inferred from sequence or structural similarity with UniProtKB:P41123 (FlyBase, 1992-)
Cellular Component
CV term Evidence References
cytosolic large ribosomal subunit inferred from sequence or structural similarity with UniProtKB:P41123 (FlyBase, 1992-) ribosome non-traceable author statement (Swiss-Prot Project Members, 1995.2.1)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions RpL13 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 60423 DroID - A comprehensive database of gene and protein interactions. • FBgn0011272 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 34329
Orthologs
Genome-wide drosophilid orthologs	Dana\GF15733 Dere\GG10074 Dgri\GH11063 Dmoj\GI17580 Dper\GL18951 Dpse\GA18330 Dsec\GM17848 Dsim\GD23645 Dvir\GJ17923 Dwil\GK15580 Dyak\RpL13
Curated drosophilid orthologs	Dpse\GA18330   Dyak\RpL13
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL005097-PA Aedes aegypti (mosquito) AGAP001805-PA Anopheles gambiae (mosquito) XP_624896.1 Apis mellifera (honey bee) XP_001943970.1 Acyrthosiphon pisum (pea aphid) At3g49010.1 Arabidopsis thaliana (wall cress) 6028 Batrachochytrium dendrobatidis (chytrid fungus) 279721 Branchiostoma floridae (lancelet) 285144 Branchiostoma floridae (lancelet) BGIBMGA003726-PA Bombyx mori (silk worm) ENSBTAP00000044536 Bos taurus (bovine) CAL0006157 Candida albicans (a form of yeast) CN10614 Caenorhabditis brenneri (small nematode) CBP09015 Caenorhabditis briggsae (nematode) CE08526 Caenorhabditis elegans (worm) ENSCAFP00000029381 Canis familiaris (dog) CAGL0L06886g Candida glabrata (haploid yeast) Chro.20312 Cryptosporidium hominis (obligate parasite) ENSCINP00000005281 Ciona intestinalis (sea squirt) JA13445 Caenorhabditis japonica (nematode) CMP006C Cyanidioschyzon merolae (red alga) cn13090 Cryptococcus neoformans (yeast-like fungus) cgd2_2990 Cryptosporidium parvum (protozoan parasite) ENSCPOP00000018440 Cavia porcellus (guinea pig) 129809 Chlamidomonas reinhardtii (green alga) RP42829 Caenorhabditis remanei (nematode) ENSCSAVP00000012031 Ciona savignyi (sedentary tunicate) 183211 Capitella spl (polychaete worm) DDB0229951 Dictyostelium discoideum (amoeba) DEHA2D08536g Debaryomyces Hansenii (yeast) 34614 Daphnia pulex (daphnia) ENSDARP00000047390 Danio rerio (zebra fish) ENSECAP00000009630 Equus caballus (horse) XP_649667 Entamoeba histolytica (anaerobic protozoan) XP_656471 Entamoeba histolytica (anaerobic protozoan) ENSGACP00000020790 Gymnopilus aculeatus (mushroom) ENSGALP00000009960 Gallus gallus (chicken) GL50803_14622 Giardia lamblia (flagellated protozoan) 105042 Hypsipyla robusta (cedar shoot borer) ENSP00000307889 Homo sapiens (human) ISCW023068-PA Ixodes scapularis (deer tick) KLLA0E22001g Kluyveromyces lactis (yeast) 197609 Lottia gigantea (owl limpet) LmjF29.2460 Leishmania major (virus) LmjF29.2470 Leishmania major (virus) ENSMODP00000004485 Monodelphis domestica (gray opossum) ENSMMUP00000023567 Macaca mulatta (rhesus monkey) ENSMUSP00000000756 Mus musculus (house mouse) 242697 Nematostella vectensis (starlet anemone) XP_001607329.1 Nasonia vitripennis (wasp) ENSOANP00000010739 Ornithorynchus anatinus (platypus) ENSORLP00000009590 Oryzias latipes (japanese killifish) LOC_Os03g37970.1 Oryza sativa (asian rice) LOC_Os06g02510.1 Oryza sativa (asian rice) 28214 Ostreococcus tauri (green alga) PF08_0075 Plasmodium falciparum (protozoal parasite) PHUM004858-PA Pediculus humanus (human body louse) 188911 Physcomitrella patens (moss) 71316 Phytophthora ramorum (sudden oak death pathogen) 109354 Phytophthora sojae (root rot pathogen) 735426 Populus trichocarpa (black cottonwood) ENSPTRP00000014462 Pan troglodytes (chimpanzee) PVX_123070 Plasmodium vivax (protozoal parasite) ENSRNOP00000020635 Rattus norvegicus (norway rat) 4754514 Sorghum bicolor (sorghum) 4769038 Sorghum bicolor (sorghum) 4894157 Sorghum bicolor (sorghum) YDL082W Saccharomyces cerevisiae (budding yeast) YMR142C Saccharomyces cerevisiae (budding yeast) Smp_022640 Schistosoma mansoni (trematode parasite) SPAC664.05 Schizosaccharomyces pombe (fission yeast) XP_001191646.1 Strongylocentrotus purpuratus (purple sea urchin) 37040 Trichoplax adhaerens (metazoa) TA19380 Theileria annulata (apicomplexan parasite) XP_967899.1 Tribolium castaneum (red flour beetle) Tc00.1047053508153.280 Trypanosoma cruzi (parasitic trypanosome) Tc00.1047053508153.290 Trypanosoma cruzi (parasitic trypanosome) Tc00.1047053510323.30 Trypanosoma cruzi (parasitic trypanosome) ENSTNIP00000012217 Tetraodon nigroviridis (green spotted pufferfish) TP01_0199 Theileria parva (parasitic protozoan) 22476 Thalassiosira pseudonana (marine diatom) ENSTRUP00000045013 Takifugu rubripes (pufferfish Takifugu) 3733.m00024 Tetrahymena thermophila (ciliate protozoa) 86485.m00562 Trichomonas vaginalis (parasitic flagellated protozoan) 94962.m00274 Trichomonas vaginalis (parasitic flagellated protozoan) 95415.m00085 Trichomonas vaginalis (parasitic flagellated protozoan) ENSXETP00000042937 Xenopus tropicalis (frog) YALI0B12826g Yarrowia lipolytica (nonconventional yeast) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV13008 LH11013 ISCW023068 FBgn0068081 FBgn0217585 FBgn0205091 FBgn0195022 FBgn0172755 JGI_V11_34614 FBgn0078335 FBgn0156552 FBgn0140324 FBgn0118544 FBgn0102386 FBgn0092757 BGIBMGA003726 ACYPI006272 GB17286 AGAP001805 AAEL005097 PB23896 PHUM361430 GLEAN_14183
Stocks & Reagents
Stocks Listed in FlyBase ( 1 )
Harvard	- PBac{RB}RpL13e02165
Genomic Clones ( 1 )
	BACR06G16 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 776 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD24350
Other clones	MIP11288 yak-ad_RpL13 yak-em_RpL13
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT05342 AT12023 AT19078 GH01530 GH01723 GH01785 GH02440 GH02875 GH03025 GH04672 GH05802 GH06669 GH07072 GH08645 GH08695 GH09202 GH11501 GH11663 GH11915 GH12646 GH13071 GH13540 GH14239 GH17971 GH20851 GH20872 GH22802 GH23004 GH23411 GH24518 GH25261 GH25904 GH26328 GH26441 GH27245 GH27893 GH27923 GH28552 GM01359 GM05876 GM10895 GM12230 GM13408 GM14516 GM14903 GM14922 GM15569 GM16104 GM16184 GM17204 GM18091 GM18515 GM18729 GM19251 GM19292 GM21257 GM21288 GM23160 GM23226 GM23615 GM23754 GM24137 GM24435 GM24481 GM25224 GM25360 GM26260 GM28318 GM28764 GM29119 GM29466 GM30139 GM30679 GM31452 GM31493 GM31755 GM32045 LD05531 LD06713 LD17241 LD17275 LD22143 LD23766 LD24071 LD24609 LD25201 LD26351 LD27303 LD27893 LD33394 LD33411 LD33888 LD35210 LD36985 LD39793 LD40553 LD40667 LD41108 LD41114 LD41470 LD43933 LD43950 LD44170 LD44916 LD45832 LD46234 LD46626 LD47392 LP01164 LP02289 LP03747 LP04831 LP04925 LP05180 LP07636 LP07715 LP08334 LP09943 LP11669 LP12678 LP13505 LP15038 LP15089 LP15375 LP15454 LP16061 LP16264 LP16522 LP16684 LP19304 LP20088 LP23005 LP24449 RH05141 RH47160 RH48214 RH48983 RH52601 RH69282 RH74361 SD04429 SD04788 SD05817 SD11370 SD11537 SD12154 SD12290 SD12293 SD12469 SD12666 SD12777 SD12792 SD15436 SD15491 SD16377 SD16451 SD16764 SD17496 SD17635 SD18603 SD18757 SD18882 SD19285 SD19929 SD20550 SD21602 SD22713 SD23809 SD25645 SD26194 SD26310 SD26556 SD27122 SD27534 SD28204 UT01615
Other clones	10946 34961 63355 80058 80191 82487 82683 106828 149503 153798 214257.5 277285 473506 473706 521802 522177 522190 522258 522301 522344 522411 522533 522584 522690 522819 523012 523055 524392 524809 524932 528180 533551 533586 533903 533969 556999 557096 557775 557817 558146 568837 568999 569801 570023 572870 AT28690 CK01.1D.F12 CK01.35D.D5 CK01.37B.G6 CK01.66D.B4 CK01.93C.D4 CK01.95B.G8 CK01.99D.C12 CK01.121B.H4 CK01.170A.A10 CK01.170A.A12 Dmel_dig_000199_0647_0339 Dmel_dig_000406_0643_0336 Dmel_dig_000502_0694_3643 Dmel_dig_001110_0702_2032 Dmel_dig_001657_0711_1386 Dmel_dig_002655_0586_1880 Dmel_dig_002863_0633_2792 Dmel_dig_002954_0600_0521 Dmel_dig_003352_0704_0576 Dmel_dig_003649_0688_0476 Dmel_dig_005669_0588_2509 Dmel_dig_009312_0605_1935 Dmel_dig_010564_0724_0578 Dmel_dig_014201_0658_1040 Dmel_dig_014786_0648_1129 Dmel_dig_015642_0697_2625 Dmel_dig_019354_0632_3410 Dmel_neb_004254_0915_3581 Dmel_neb_010095_0945_0552 Dmel_neb_010964_0085_1704 Dmel_neb_011174_0595_2552 Dmel_neb_011419_0877_1120 Dmel_neb_011667_0919_1261 Dmel_neb_012496_0416_3099 Dmel_neb_012757_0659_2682 Dmel_neb_013206_0650_0832 Dmel_neb_013267_0092_0746 Dmel_neb_013574_0329_1483 Dmel_neb_014212_0658_0825 Dmel_neb_014296_0447_1531 Dmel_neb_014580_0633_2630 Dmel_neb_014590_0360_2530 Dmel_neb_014592_0856_2901 Dmel_neb_014615_0860_3463 Dmel_neb_014616_0620_0778 Dmel_neb_014913_0350_2509 Dmel_neb_015556_0412_2746 EC25093 EC26149 EC28293 EC30269 EC34569 EC38503 EC051759 EK072946 EK074160 EK084444 EK104333 EK111011 EK190422 EK212638 EK215855 EK216441 EK257762 EK304119 EN00553 EN01054 EN01517 EN01658 EN01760 EN01846 EN01958 EN02005 EN02320 EN02413 EN02556 EN02844 EN03235 EN03325 EN03508 EN05315 EN05951 EN09011 EN09733 EN09813 EN09938 EN10364 EN11814 EN12036 EN12353 EN12446 EN13060 EN13501 EN14027 EN15641 EN17241 EN17508 EP22128 ESG016c.E21_F06 EST23 FGC022A12 FGM002F04 FGM102A01 FGM103B09 FGM104C08 FGM206F03 FGM214C02 FGM214H12 FGM217H08 FGM222D03 FGM222E04 FGM225G12 FGM226D09 FGM230B02 FGM230C03 FGM233F05 FGM236A03 FGM236F09 FGM315D11 GH03055 GH03890 GH04146 GH04396 GH04441 GH04852 GH06266 GH07668 GH09766 GH11845 GH13347 GH14687 GH15109 GH15766 GH15827 GH17314 GH17849 GH19766 GH19905 GH20057 GH20615 GM01837 GM02039 GM02753 GM03355 GM03448 GM03765 GM03883 GM04042 GM04595 GM04887 GM06228 GM07986 GM08008 GM09175 GM09762 GM10478 GM10585 GM12804 GM13445 GM14686 GM14818 GM14841 GM14996 GM15031 GM15362 GM15560 GM16770 GM18451 GM19365 GM21884 GM23512 GM24944 GM25107 GM26012 GM30426 GM31075 GM31630 GM32493 IP01705 IP01706 IP01707 IP01708 IP02468 IP03005 IP03644 IP03744 IP03844 IP03944 IP04224 IP04324 IP06618 IP10933 IP11348 IP12859 IP13059 IP13122 IP13159 IP17761 LD07369 LD07550 LD15390 LD15660 LD15745 LD16892 LD17473 LD20126 LD22642 LD23844 LD25305 LD25734 LD26279 LD30431 LD30721 LD31081 LD34080 LD38450 LP03954 LP05270 LP05813 LP06095 LP07671 LP09135 LP11570 LP23962 RE01561 RE01631 RE03518 RE03573 RE04254 RE04927 RE05602 RE05662 RE07226 RE08538 RE08579 RE08915 RE10071 RE11774 RE11794 RE11965 RE12189 RE12460 RE12875 RE13118 RE13732 RE13869 RE14495 RE14586 RE14615 RE14653 RE14931 RE16471 RE16524 RE16650 RE17174 RE18839 RE19036 RE19343 RE21542 RE21606 RE22418 RE22790 RE25645 RE27483 RE27793 RE27872 RE29928 RE30615 RE31511 RE32007 RE32031 RE32095 RE32309 RE32543 RE34208 RE34657 RE35688 RE36330 RE36901 RE39268 RE39767 RE43052 RE44216 RE44336 RE46728 RE46806 RE47290 RE47707 RE49117 RE50386 RE51994 RE53239 RE54682 RE55271 RE55462 RE56946 RE57171 RE58314 RE58692 RE58959 RE60368 RE60565 RE60994 RE61842 RE62215 RE63630 RE66148 RE66524 RE67807 RE68987 RE68992 RE69972 RE70524 RE72654 RE73194 RE74044 RE74505 RE75144 RH01060 RH02939 RH03996 RH04224 RH04629 RH04715 RH05217 RH05340 RH05501 RH07783 RH08642 RH09831 RH10044 RH10205 RH10714 RH10718 RH10819 RH10930 RH11488 RH11795 RH12288 RH12742 RH13135 RH13492 RH13812 RH13967 RH15095 RH17814 RH18325 RH20853 RH21014 RH21034 RH21096 RH21338 RH21377 RH21474 RH21695 RH21788 RH22445 RH22579 RH22877 RH23825 RH24288 RH24602 RH25266 RH25386 RH25759 RH26049 RH26323 RH26464 RH26505 RH26530 RH26885 RH27095 RH27344 RH27593 RH27913 RH28127 RH28311 RH28320 RH28863 RH29495 RH29510 RH29544 RH29668 RH29920 RH29983 RH30189 RH30303 RH30533 RH31204 RH31347 RH31551 RH32043 RH32610 RH32729 RH34529 RH35463 RH35501 RH35504 RH35732 RH35877 RH36315 RH36454 RH36458 RH36783 RH36831 RH36895 RH37217 RH37240 RH37241 RH37279 RH37287 RH37678 RH37724 RH37928 RH37959 RH38009 RH38023 RH38047 RH38058 RH38380 RH38570 RH39053 RH39438 RH39803 RH39832 RH40368 RH41336 RH42251 RH42532 RH43335 RH43871 RH44436 RH45207 RH45270 RH45386 RH46565 RH46765 RH47404 RH47511 RH47621 RH48843 RH49121 RH49137 RH49562 RH50057 RH50552 RH51252 RH52117 RH52522 RH53114 RH53740 RH54589 RH54903 RH54991 RH55238 RH55345 RH55886 RH56312 RH56428 RH56533 RH56867 RH57164 RH58313 RH58596 RH58988 RH59092 RH59481 RH59495 RH60129 RH60177 RH60785 RH61490 RH61633 RH62064 RH62820 RH62929 RH64001 RH65713 RH65910 RH67820 RH68152 RH68229 RH68434 RH68679 RH68775 RH68805 RH69340 RH70263 RH70458 RH70461 RH72357 RH72449 RH72956 RH73254 RH73787 RH74048 RH74145 RH74740 RH74791 RP004092906 RP004289267 RP004528447 RP004535385 RP004537892 SD03225 SD03241 SD03475 SD11555 SD13393 SD13445 SD13459 SD13519 SD13778 SD13927 SD14253 SD14316 SD14639 SD14650 SD14733 SD15786 SD16543 SD16666 SD17023 SD18106 SD18510 SD19308 SD19813 SD20141 SD20544 SD21816 SD21879 SD22781 SD23814 SD24108 SD26067 SD26641 SD27017 SD27528 SD27552 SD27724 SD27976 SD28067 UT01053 UT01187 UT01508 UT01530 UT01532 UT01669 UT01993 UUGC0968
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0011272 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 34329
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: RpL13 anon-EST:fe1D1 (Bayraktaroglu, 2000.11.2)
Additional comments	The genetically defined "M(2)31A" locus (characterized by previous aneuploidy analyses) likely comprises two separable, closely linked Minute genes ("RpL7" and "RpL13"). (Marygold et al., 2007)
Other Comments
	RNAi screen using dsRNA made from templates generated with primers directed against this gene results in aberrantly short, monopolar spindles when assayed in S2 cells. This phenotype can be observed when the screen is performed with or without Cdc27 dsRNA. (Goshima et al., 2007) Minute gene. (Marygold et al., 2007) Deletions removing RpL13 but no other cytoplasmic ribosomal protein-encoding genes show Minute phenotypes. The interval between flanking non-Minute deletions contains only RpL13. (Marygold et al., 2007) dsRNA made from templates generated with primers directed against RpL13 that is transfected into S2 treated with Listeria monocytogenes reveals RpL13 to be involved in Listeria monocytogenes vacuolar escape. (Cheng et al., 2005) The level of identity between RpL13 and the human BBC1 gene demonstrates the gene has been highly conserved throughout eukaryotic evolution. RpL13 is highly expressed during embryonic development and may have a role in the cell, possible nuclear and growth related. (Helps et al., 1995)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_078806 NM_001038802 RefSeq (Proteins) • NP_523530 NP_001033891 DDBJ / EMBL / GenBank • AA433209 AAF52842 AAF52842.1 ABC65888 AI109442 CAA54898 X77926 Entrez Gene - A searchable database of RefSeq genes. • 34329 UniProtKB/Swiss-Prot • P41126
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Ribosomal protein L13e, conserved site (IPR018256) Ribosomal protein L13e (IPR001380)
Linkouts
	BioGRID - A database of protein and genetic interactions • 60423 DroID - A comprehensive database of gene and protein interactions. • FBgn0011272 DRSC - Results from RNAi screens. • FBgn0011272 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0011272 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG4651-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0011272 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 34329 InParanoid A subset of ortholog calls from InParanoid. • AAEL005097-PA Aedes aegypti (mosquito) AGAP001805-PA Anopheles gambiae (mosquito) XP_624896.1 Apis mellifera (honey bee) XP_001943970.1 Acyrthosiphon pisum (pea aphid) At3g49010.1 Arabidopsis thaliana (wall cress) 6028 Batrachochytrium dendrobatidis (chytrid fungus) 279721 Branchiostoma floridae (lancelet) 285144 Branchiostoma floridae (lancelet) BGIBMGA003726-PA Bombyx mori (silk worm) ENSBTAP00000044536 Bos taurus (bovine) CAL0006157 Candida albicans (a form of yeast) CN10614 Caenorhabditis brenneri (small nematode) CBP09015 Caenorhabditis briggsae (nematode) CE08526 Caenorhabditis elegans (worm) ENSCAFP00000029381 Canis familiaris (dog) CAGL0L06886g Candida glabrata (haploid yeast) Chro.20312 Cryptosporidium hominis (obligate parasite) ENSCINP00000005281 Ciona intestinalis (sea squirt) JA13445 Caenorhabditis japonica (nematode) CMP006C Cyanidioschyzon merolae (red alga) cn13090 Cryptococcus neoformans (yeast-like fungus) cgd2_2990 Cryptosporidium parvum (protozoan parasite) ENSCPOP00000018440 Cavia porcellus (guinea pig) 129809 Chlamidomonas reinhardtii (green alga) RP42829 Caenorhabditis remanei (nematode) ENSCSAVP00000012031 Ciona savignyi (sedentary tunicate) 183211 Capitella spl (polychaete worm) DDB0229951 Dictyostelium discoideum (amoeba) DEHA2D08536g Debaryomyces Hansenii (yeast) 34614 Daphnia pulex (daphnia) ENSDARP00000047390 Danio rerio (zebra fish) ENSECAP00000009630 Equus caballus (horse) XP_649667 Entamoeba histolytica (anaerobic protozoan) XP_656471 Entamoeba histolytica (anaerobic protozoan) ENSGACP00000020790 Gymnopilus aculeatus (mushroom) ENSGALP00000009960 Gallus gallus (chicken) GL50803_14622 Giardia lamblia (flagellated protozoan) 105042 Hypsipyla robusta (cedar shoot borer) ENSP00000307889 Homo sapiens (human) ISCW023068-PA Ixodes scapularis (deer tick) KLLA0E22001g Kluyveromyces lactis (yeast) 197609 Lottia gigantea (owl limpet) LmjF29.2460 Leishmania major (virus) LmjF29.2470 Leishmania major (virus) ENSMODP00000004485 Monodelphis domestica (gray opossum) ENSMMUP00000023567 Macaca mulatta (rhesus monkey) ENSMUSP00000000756 Mus musculus (house mouse) 242697 Nematostella vectensis (starlet anemone) XP_001607329.1 Nasonia vitripennis (wasp) ENSOANP00000010739 Ornithorynchus anatinus (platypus) ENSORLP00000009590 Oryzias latipes (japanese killifish) LOC_Os03g37970.1 Oryza sativa (asian rice) LOC_Os06g02510.1 Oryza sativa (asian rice) 28214 Ostreococcus tauri (green alga) PF08_0075 Plasmodium falciparum (protozoal parasite) PHUM004858-PA Pediculus humanus (human body louse) 188911 Physcomitrella patens (moss) 71316 Phytophthora ramorum (sudden oak death pathogen) 109354 Phytophthora sojae (root rot pathogen) 735426 Populus trichocarpa (black cottonwood) ENSPTRP00000014462 Pan troglodytes (chimpanzee) PVX_123070 Plasmodium vivax (protozoal parasite) ENSRNOP00000020635 Rattus norvegicus (norway rat) 4754514 Sorghum bicolor (sorghum) 4769038 Sorghum bicolor (sorghum) 4894157 Sorghum bicolor (sorghum) YDL082W Saccharomyces cerevisiae (budding yeast) YMR142C Saccharomyces cerevisiae (budding yeast) Smp_022640 Schistosoma mansoni (trematode parasite) SPAC664.05 Schizosaccharomyces pombe (fission yeast) XP_001191646.1 Strongylocentrotus purpuratus (purple sea urchin) 37040 Trichoplax adhaerens (metazoa) TA19380 Theileria annulata (apicomplexan parasite) XP_967899.1 Tribolium castaneum (red flour beetle) Tc00.1047053508153.280 Trypanosoma cruzi (parasitic trypanosome) Tc00.1047053508153.290 Trypanosoma cruzi (parasitic trypanosome) Tc00.1047053510323.30 Trypanosoma cruzi (parasitic trypanosome) ENSTNIP00000012217 Tetraodon nigroviridis (green spotted pufferfish) TP01_0199 Theileria parva (parasitic protozoan) 22476 Thalassiosira pseudonana (marine diatom) ENSTRUP00000045013 Takifugu rubripes (pufferfish Takifugu) 3733.m00024 Tetrahymena thermophila (ciliate protozoa) 86485.m00562 Trichomonas vaginalis (parasitic flagellated protozoan) 94962.m00274 Trichomonas vaginalis (parasitic flagellated protozoan) 95415.m00085 Trichomonas vaginalis (parasitic flagellated protozoan) ENSXETP00000042937 Xenopus tropicalis (frog) YALI0B12826g Yarrowia lipolytica (nonconventional yeast) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 34329 modMine - Data generated by the modENCODE project. • FBgn0011272 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV13008 LH11013 ISCW023068 FBgn0068081 FBgn0217585 FBgn0205091 FBgn0195022 FBgn0172755 JGI_V11_34614 FBgn0078335 FBgn0156552 FBgn0140324 FBgn0118544 FBgn0102386 FBgn0092757 BGIBMGA003726 ACYPI006272 GB17286 AGAP001805 AAEL005097 PB23896 PHUM361430 GLEAN_14183
Synonyms & Secondary IDs ( 14 )
Reported As
Symbol Synonym	anon-EST:fe1D1   bbc1 (Helps, 1994.2.28) Bbc1   CG4651 (Cermelli et al., 2006, Goshima et al., 2007, Molnar et al., 2006, Marygold et al., 2007, Keleman et al., 2009.8.5, Cammarato et al., 2011) Dmbbc1 (Kwon et al., 2003, Helps et al., 1995) L13 (Carpenter et al., 2009) Rpl13 (Leemans et al., 2000, Baig et al., 2010) rpL13 (Helps et al., 1995) RpL13 (Cermelli et al., 2006, Buszczak et al., 2007, Goshima et al., 2007, Molnar et al., 2006, Isogai et al., 2007, Marygold et al., 2007, Nie et al., 2009) Rp L13 (Alonso and Santaren, 2006) unnamed (Schmid and Tautz, 1997)
Name Synonym	anon-fast-evolving-1D1   Ribosomal protein L13 (Cammarato et al., 2011) r-protein L13 (Helps et al., 1995)
Secondary FlyBase IDs
	FBgn0014460 FBgn0025260
References ( 34 )
Generate a list of	All references relating to this gene ( 34 )
List References by type	Research paper  ( 18 ) Supplementary material  ( 5 ) Personal communication to FlyBase  ( 3 ) FlyBase analysis  ( 2 ) DNA/RNA sequence record  ( 1 ) Protein sequence record  ( 1 ) Computer file  ( 1 ) Curated genome annotation  ( 1 ) Automatic genome annotation  ( 1 )
Recent research papers ( 4 )
	Booker et al., 2011, BMC Genomics 12: 50 False negative rates in Drosophila cell-based RNAi screens: a case study. [FBrf0212969] Baig et al., 2010, Genetics 184(3): 731--744 The chromatin-remodeling protein Osa interacts with CyclinE in Drosophila eye imaginal discs. [FBrf0210399] Blanco et al., 2010, BMC Dev. Biol. 10: 94 Gene expression following induction of regeneration in Drosophila wing imaginal discs. Expression profile of regenerating wing discs. [FBrf0211812] Müller et al., 2010, EMBO J. 29(19): 3344--3357 Proteomic and functional analysis of the mitotic Drosophila centrosome. [FBrf0212030] Show all research papers ...