A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Gene Dmel\Taf12

General Information
SymbolDmel\Taf12SpeciesD. melanogaster
NameTBP-associated factor 12Annotation symbolCG17358
Feature typeprotein_coding_geneFlyBase IDFBgn0011290
Gene Model StatusCurrent Stock availability 2 publicly available
Also Known AsTaf30α, dTAFII30α, TFIID, TAFII30α, dTAF12, dTAFII30, p28, p22
Genomic Location
Chromosome (arm)3RRecombination map
Cytogenetic map86E15-86E15Sequence location3R:7,504,099..7,505,408 [-]

Genomic Maps

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modENCODE GBrowse
detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
The gene TBP-associated factor 12 is referred to in FlyBase by the symbol Dmel\Taf12 (CG17358, FBgn0011290). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: TBP-class protein binding RNA polymerase II transcription factor activity involved in preinitiation complex assembly; transcription factor binding; protein homodimerization activity; sequence-specific core promoter binding RNA polymerase II transcription factor activity involved in preinitiation complex assembly. There is experimental evidence that it is involved in the biological process: neurogenesis. 4 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. Protein features are: Histone-fold; Transcription initiation factor TFIID. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult brain. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, adult hindgut, larval/adult Malpighian tubules, adult heart, larval fat body, larval/adult salivary gland, larval trachea, adult ovary, adult male accessory gland, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1625702_s_at completely aligns to an exonic region common to each of the 3 FlyBase-annotated transcript isoforms of Taf12. Gene sequence location is 3R:7504099..7505408.
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Description
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This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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FB2011_10
References
FB2012_01
Sequence features
Controlled Vocabulary Terms
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
86E15-86E15  
Limits computationally determined from genome sequence between P{PZ}tho1&P{PZ}l(3)0462905275 and P{EP}Lk6EP886  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
86F1-86F2  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\Taf12 for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0082443 FBtr0082442 FBtr0290205 FBtr0082440 FBtr0082424 FBtr0082439 FBpp0081919 FBpp0288644 FBpp0081918 FBpp0081916 FBpp0081900 FBpp0081915 FBti0041673
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0082442
  1191
  196
FBtr0082440
  1071
  196
FBtr0290205
  857
  160
Additional Transcript Data & Comments
Reported size (kB)
1.4 (northern blot)
0.8 (longest cDNA)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0081918  
21.5  
196  
7.15  
FBpp0081916  
21.5  
196  
7.15  
FBpp0288644  
17.6  
160  
9.47  
Additional Polypeptide Data & Comments
Reported size (kDa)
196 (aa); 22 (kD predicted)
196, 160 (aa); 28, 22 (kD observed); 22, 18 (kD predicted)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hidePolypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hide High-Throughput Expression Data
or
Untitled Document detailed view CG18476-RA Taf12-RA Taf12-RD Taf12-RB Ho-RA
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

modENCODE Temporal Expression Data for FBgn0011290


   Styles
Linear
Logarithmic
Heatmap
   Scales
max expr for FBgn0011290
Very low expression bin max
Moderate expression bin max
High expression bin max
Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No expression (0 - 0)
 
Extremely low expression (1 - 10)
 
Very low expression (11 - 100)
 
Low expression (101 - 400)
 
Moderate expression (401 - 1400)
 
Moderately high expression (1401 - 4000)
 
High expression (4001 - 10000)
 
Very high expression (10001 - 100000)
 
Extremely high expression (100001 - 2000000)

Linear, scaled to maximum FBgn0011290 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 5963
embryo 02-04hr
 
 8026
embryo 04-06hr
 
 5894
embryo 06-08hr
 
 5190
embryo 08-10hr
 
 5206
embryo 10-12hr
 
 5153
embryo 12-14hr
 
 3382
embryo 14-16hr
 
 3781
embryo 16-18hr
 
 2610
embryo 18-20hr
 
 1859
embryo 20-22hr
 
 2275
embryo 22-24hr
 
 2239
larva L1
 
 1661
larva L2
 
 1309
larva L3 12hr old
 
 1046
larva L3 puffstage 1-2
 
 1098
larva L3 puffstage 3-6
 
 1625
larva L3 puffstage 7-9
 
 2215
white prepupae new
 
 2114
white prepupae 12hr
 
 2140
white prepupae 24hr
 
 2481
pupae 2d postWPP
 
 2398
pupae 3d postWPP
 
 1413
pupae 4d postWPP
 
 1317
adult male 01day
 
 1182
adult male 05day
 
 1323
adult male 30day
 
 1574
adult female 01day
 
 2577
adult female 05day
 
 3162
adult female 30day
 
 3346
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
Linear, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (5963)
embryo 02-04hr
 (8026)
embryo 04-06hr
 (5894)
embryo 06-08hr
 (5190)
embryo 08-10hr
 (5206)
embryo 10-12hr
 (5153)
embryo 12-14hr
 (3382)
embryo 14-16hr
 (3781)
embryo 16-18hr
 (2610)
embryo 18-20hr
 (1859)
embryo 20-22hr
 (2275)
embryo 22-24hr
 (2239)
larva L1
 (1661)
larva L2
 (1309)
larva L3 12hr old
 (1046)
larva L3 puffstage 1-2
 (1098)
larva L3 puffstage 3-6
 (1625)
larva L3 puffstage 7-9
 (2215)
white prepupae new
 (2114)
white prepupae 12hr
 (2140)
white prepupae 24hr
 (2481)
pupae 2d postWPP
 (2398)
pupae 3d postWPP
 (1413)
pupae 4d postWPP
 (1317)
adult male 01day
 (1182)
adult male 05day
 (1323)
adult male 30day
 (1574)
adult female 01day
 (2577)
adult female 05day
 (3162)
adult female 30day
 (3346)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (5963)
embryo 02-04hr
 (8026)
embryo 04-06hr
 (5894)
embryo 06-08hr
 (5190)
embryo 08-10hr
 (5206)
embryo 10-12hr
 (5153)
embryo 12-14hr
 (3382)
embryo 14-16hr
 (3781)
embryo 16-18hr
 (2610)
embryo 18-20hr
 (1859)
embryo 20-22hr
 (2275)
embryo 22-24hr
 (2239)
larva L1
 (1661)
larva L2
 
 1309
larva L3 12hr old
 
 1046
larva L3 puffstage 1-2
 
 1098
larva L3 puffstage 3-6
 (1625)
larva L3 puffstage 7-9
 (2215)
white prepupae new
 (2114)
white prepupae 12hr
 (2140)
white prepupae 24hr
 (2481)
pupae 2d postWPP
 (2398)
pupae 3d postWPP
 1413
pupae 4d postWPP
 
 1317
adult male 01day
 
 1182
adult male 05day
 
 1323
adult male 30day
 (1574)
adult female 01day
 (2577)
adult female 05day
 (3162)
adult female 30day
 (3346)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 5963
embryo 02-04hr
 
 8026
embryo 04-06hr
 
 5894
embryo 06-08hr
 
 5190
embryo 08-10hr
 
 5206
embryo 10-12hr
 
 5153
embryo 12-14hr
 
 3382
embryo 14-16hr
 
 3781
embryo 16-18hr
 
 2610
embryo 18-20hr
 
 1859
embryo 20-22hr
 
 2275
embryo 22-24hr
 
 2239
larva L1
 
 1661
larva L2
 
 1309
larva L3 12hr old
 
 1046
larva L3 puffstage 1-2
 
 1098
larva L3 puffstage 3-6
 
 1625
larva L3 puffstage 7-9
 
 2215
white prepupae new
 
 2114
white prepupae 12hr
 
 2140
white prepupae 24hr
 
 2481
pupae 2d postWPP
 
 2398
pupae 3d postWPP
 
 1413
pupae 4d postWPP
 
 1317
adult male 01day
 
 1182
adult male 05day
 
 1323
adult male 30day
 
 1574
adult female 01day
 
 2577
adult female 05day
 
 3162
adult female 30day
 
 3346
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 5963
embryo 02-04hr
 
 8026
embryo 04-06hr
 
 5894
embryo 06-08hr
 
 5190
embryo 08-10hr
 
 5206
embryo 10-12hr
 
 5153
embryo 12-14hr
 
 3382
embryo 14-16hr
 
 3781
embryo 16-18hr
 
 2610
embryo 18-20hr
 
 1859
embryo 20-22hr
 
 2275
embryo 22-24hr
 
 2239
larva L1
 
 1661
larva L2
 
 1309
larva L3 12hr old
 
 1046
larva L3 puffstage 1-2
 
 1098
larva L3 puffstage 3-6
 
 1625
larva L3 puffstage 7-9
 
 2215
white prepupae new
 
 2114
white prepupae 12hr
 
 2140
white prepupae 24hr
 
 2481
pupae 2d postWPP
 
 2398
pupae 3d postWPP
 
 1413
pupae 4d postWPP
 
 1317
adult male 01day
 
 1182
adult male 05day
 
 1323
adult male 30day
 
 1574
adult female 01day
 
 2577
adult female 05day
 
 3162
adult female 30day
 
 3346
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to maximum FBgn0011290 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 5963
embryo 02-04hr
 
 8026
embryo 04-06hr
 
 5894
embryo 06-08hr
 
 5190
embryo 08-10hr
 
 5206
embryo 10-12hr
 
 5153
embryo 12-14hr
 
 3382
embryo 14-16hr
 
 3781
embryo 16-18hr
 
 2610
embryo 18-20hr
 
 1859
embryo 20-22hr
 
 2275
embryo 22-24hr
 
 2239
larva L1
 
 1661
larva L2
 
 1309
larva L3 12hr old
 
 1046
larva L3 puffstage 1-2
 
 1098
larva L3 puffstage 3-6
 
 1625
larva L3 puffstage 7-9
 
 2215
white prepupae new
 
 2114
white prepupae 12hr
 
 2140
white prepupae 24hr
 
 2481
pupae 2d postWPP
 
 2398
pupae 3d postWPP
 
 1413
pupae 4d postWPP
 
 1317
adult male 01day
 
 1182
adult male 05day
 
 1323
adult male 30day
 
 1574
adult female 01day
 
 2577
adult female 05day
 
 3162
adult female 30day
 
 3346
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (5963)
embryo 02-04hr
 (8026)
embryo 04-06hr
 (5894)
embryo 06-08hr
 (5190)
embryo 08-10hr
 (5206)
embryo 10-12hr
 (5153)
embryo 12-14hr
 (3382)
embryo 14-16hr
 (3781)
embryo 16-18hr
 (2610)
embryo 18-20hr
 (1859)
embryo 20-22hr
 (2275)
embryo 22-24hr
 (2239)
larva L1
 (1661)
larva L2
 (1309)
larva L3 12hr old
 (1046)
larva L3 puffstage 1-2
 (1098)
larva L3 puffstage 3-6
 (1625)
larva L3 puffstage 7-9
 (2215)
white prepupae new
 (2114)
white prepupae 12hr
 (2140)
white prepupae 24hr
 (2481)
pupae 2d postWPP
 (2398)
pupae 3d postWPP
 (1413)
pupae 4d postWPP
 (1317)
adult male 01day
 (1182)
adult male 05day
 (1323)
adult male 30day
 (1574)
adult female 01day
 (2577)
adult female 05day
 (3162)
adult female 30day
 (3346)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (5963)
embryo 02-04hr
 (8026)
embryo 04-06hr
 (5894)
embryo 06-08hr
 (5190)
embryo 08-10hr
 (5206)
embryo 10-12hr
 (5153)
embryo 12-14hr
 (3382)
embryo 14-16hr
 (3781)
embryo 16-18hr
 (2610)
embryo 18-20hr
 1859
embryo 20-22hr
 2275
embryo 22-24hr
 2239
larva L1
 1661
larva L2
 
 1309
larva L3 12hr old
 
 1046
larva L3 puffstage 1-2
 
 1098
larva L3 puffstage 3-6
 1625
larva L3 puffstage 7-9
 2215
white prepupae new
 2114
white prepupae 12hr
 2140
white prepupae 24hr
 (2481)
pupae 2d postWPP
 2398
pupae 3d postWPP
 1413
pupae 4d postWPP
 
 1317
adult male 01day
 
 1182
adult male 05day
 
 1323
adult male 30day
 1574
adult female 01day
 (2577)
adult female 05day
 (3162)
adult female 30day
 (3346)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 5963
embryo 02-04hr
 
 8026
embryo 04-06hr
 
 5894
embryo 06-08hr
 
 5190
embryo 08-10hr
 
 5206
embryo 10-12hr
 
 5153
embryo 12-14hr
 
 3382
embryo 14-16hr
 
 3781
embryo 16-18hr
 
 2610
embryo 18-20hr
 
 1859
embryo 20-22hr
 
 2275
embryo 22-24hr
 
 2239
larva L1
 
 1661
larva L2
 
 1309
larva L3 12hr old
 
 1046
larva L3 puffstage 1-2
 
 1098
larva L3 puffstage 3-6
 
 1625
larva L3 puffstage 7-9
 
 2215
white prepupae new
 
 2114
white prepupae 12hr
 
 2140
white prepupae 24hr
 
 2481
pupae 2d postWPP
 
 2398
pupae 3d postWPP
 
 1413
pupae 4d postWPP
 
 1317
adult male 01day
 
 1182
adult male 05day
 
 1323
adult male 30day
 
 1574
adult female 01day
 
 2577
adult female 05day
 
 3162
adult female 30day
 
 3346
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 5963
embryo 02-04hr
 
 8026
embryo 04-06hr
 
 5894
embryo 06-08hr
 
 5190
embryo 08-10hr
 
 5206
embryo 10-12hr
 
 5153
embryo 12-14hr
 
 3382
embryo 14-16hr
 
 3781
embryo 16-18hr
 
 2610
embryo 18-20hr
 
 1859
embryo 20-22hr
 
 2275
embryo 22-24hr
 
 2239
larva L1
 
 1661
larva L2
 
 1309
larva L3 12hr old
 
 1046
larva L3 puffstage 1-2
 
 1098
larva L3 puffstage 3-6
 
 1625
larva L3 puffstage 7-9
 
 2215
white prepupae new
 
 2114
white prepupae 12hr
 
 2140
white prepupae 24hr
 
 2481
pupae 2d postWPP
 
 2398
pupae 3d postWPP
 
 1413
pupae 4d postWPP
 
 1317
adult male 01day
 
 1182
adult male 05day
 
 1323
adult male 30day
 
 1574
adult female 01day
 
 2577
adult female 05day
 
 3162
adult female 30day
 
 3346
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

FlyAtlas Anatomical Expression Data for FBgn0011290


   Styles
Linear
Logarithmic
Heatmap
Back-to-back
   Scales
max expr for FBgn0011290
Moderate expression bin max
High level expression bin max
Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult brain. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, adult hindgut, larval/adult Malpighian tubules, adult heart, larval fat body, larval/adult salivary gland, larval trachea, adult ovary, adult male accessory gland, larval/adult carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (1000 - 25000)

Linear, scaled to maximum FBgn0011290 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 375.525
Larval Midgut
 
 75.1
Larval Hindgut
 
 91.5
Larval Malpighian Tubules
 
 143.3
Larval Fat Body
 
 100.9
Larval Salivary Gland
 
 175.5
Larval Trachea
 
 211.25
Larval Carcass
 
 145.85
Adult Head
 
 206.3
Adult Eye
 
 333.175
Adult Brain
 
 550.9
Adult Thoracic-Abdominal Ganglion
 
 382.6
Adult Crop
 
 189.3
Adult Midgut
 
 93.2
Adult Hindgut
 
 149.6
Adult Malpighian Tubules
 
 108.9
Adult Fat Body
 
 77.7
Adult Salivary Gland
 
 197.2
Adult Heart
 
 133.55
Adult VirginFemale Spermatheca
 
 62.4
Adult InseminatedFemale Spermatheca
 
 69.1
Adult Ovary
 
 340.2
Adult Testis
 
 46.5
Adult Male Accessory Gland
 
 270.6
Adult Carcass
 
 121.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 375.525
Larval Midgut
 
 75.1
Larval Hindgut
 
 91.5
Larval Malpighian Tubules
 
 143.3
Larval Fat Body
 
 100.9
Larval Salivary Gland
 
 175.5
Larval Trachea
 
 211.25
Larval Carcass
 
 145.85
Adult Head
 
 206.3
Adult Eye
 
 333.175
Adult Brain
 (550.9)
Adult Thoracic-Abdominal Ganglion
 
 382.6
Adult Crop
 
 189.3
Adult Midgut
 
 93.2
Adult Hindgut
 
 149.6
Adult Malpighian Tubules
 
 108.9
Adult Fat Body
 
 77.7
Adult Salivary Gland
 
 197.2
Adult Heart
 
 133.55
Adult VirginFemale Spermatheca
 
 62.4
Adult InseminatedFemale Spermatheca
 
 69.1
Adult Ovary
 
 340.2
Adult Testis
 
 46.5
Adult Male Accessory Gland
 
 270.6
Adult Carcass
 
 121.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 375.525
Larval Midgut
 
 75.1
Larval Hindgut
 
 91.5
Larval Malpighian Tubules
 
 143.3
Larval Fat Body
 
 100.9
Larval Salivary Gland
 
 175.5
Larval Trachea
 
 211.25
Larval Carcass
 
 145.85
Adult Head
 
 206.3
Adult Eye
 
 333.175
Adult Brain
 
 550.9
Adult Thoracic-Abdominal Ganglion
 
 382.6
Adult Crop
 
 189.3
Adult Midgut
 
 93.2
Adult Hindgut
 
 149.6
Adult Malpighian Tubules
 
 108.9
Adult Fat Body
 
 77.7
Adult Salivary Gland
 
 197.2
Adult Heart
 
 133.55
Adult VirginFemale Spermatheca
 
 62.4
Adult InseminatedFemale Spermatheca
 
 69.1
Adult Ovary
 
 340.2
Adult Testis
 
 46.5
Adult Male Accessory Gland
 
 270.6
Adult Carcass
 
 121.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 375.525
Larval Midgut
 
 75.1
Larval Hindgut
 
 91.5
Larval Malpighian Tubules
 
 143.3
Larval Fat Body
 
 100.9
Larval Salivary Gland
 
 175.5
Larval Trachea
 
 211.25
Larval Carcass
 
 145.85
Adult Head
 
 206.3
Adult Eye
 
 333.175
Adult Brain
 
 550.9
Adult Thoracic-Abdominal Ganglion
 
 382.6
Adult Crop
 
 189.3
Adult Midgut
 
 93.2
Adult Hindgut
 
 149.6
Adult Malpighian Tubules
 
 108.9
Adult Fat Body
 
 77.7
Adult Salivary Gland
 
 197.2
Adult Heart
 
 133.55
Adult VirginFemale Spermatheca
 
 62.4
Adult InseminatedFemale Spermatheca
 
 69.1
Adult Ovary
 
 340.2
Adult Testis
 
 46.5
Adult Male Accessory Gland
 
 270.6
Adult Carcass
 
 121.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to maximum FBgn0011290 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 375.525
Larval Midgut
 
 75.1
Larval Hindgut
 
 91.5
Larval Malpighian Tubules
 
 143.3
Larval Fat Body
 
 100.9
Larval Salivary Gland
 
 175.5
Larval Trachea
 
 211.25
Larval Carcass
 
 145.85
Adult Head
 
 206.3
Adult Eye
 
 333.175
Adult Brain
 
 550.9
Adult Thoracic-Abdominal Ganglion
 
 382.6
Adult Crop
 
 189.3
Adult Midgut
 
 93.2
Adult Hindgut
 
 149.6
Adult Malpighian Tubules
 
 108.9
Adult Fat Body
 
 77.7
Adult Salivary Gland
 
 197.2
Adult Heart
 
 133.55
Adult VirginFemale Spermatheca
 
 62.4
Adult InseminatedFemale Spermatheca
 
 69.1
Adult Ovary
 
 340.2
Adult Testis
 
 46.5
Adult Male Accessory Gland
 
 270.6
Adult Carcass
 
 121.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 375.525
Larval Midgut
 
 75.1
Larval Hindgut
 
 91.5
Larval Malpighian Tubules
 
 143.3
Larval Fat Body
 
 100.9
Larval Salivary Gland
 
 175.5
Larval Trachea
 
 211.25
Larval Carcass
 
 145.85
Adult Head
 
 206.3
Adult Eye
 
 333.175
Adult Brain
 550.9
Adult Thoracic-Abdominal Ganglion
 
 382.6
Adult Crop
 
 189.3
Adult Midgut
 
 93.2
Adult Hindgut
 
 149.6
Adult Malpighian Tubules
 
 108.9
Adult Fat Body
 
 77.7
Adult Salivary Gland
 
 197.2
Adult Heart
 
 133.55
Adult VirginFemale Spermatheca
 
 62.4
Adult InseminatedFemale Spermatheca
 
 69.1
Adult Ovary
 
 340.2
Adult Testis
 
 46.5
Adult Male Accessory Gland
 
 270.6
Adult Carcass
 
 121.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 375.525
Larval Midgut
 
 75.1
Larval Hindgut
 
 91.5
Larval Malpighian Tubules
 
 143.3
Larval Fat Body
 
 100.9
Larval Salivary Gland
 
 175.5
Larval Trachea
 
 211.25
Larval Carcass
 
 145.85
Adult Head
 
 206.3
Adult Eye
 
 333.175
Adult Brain
 
 550.9
Adult Thoracic-Abdominal Ganglion
 
 382.6
Adult Crop
 
 189.3
Adult Midgut
 
 93.2
Adult Hindgut
 
 149.6
Adult Malpighian Tubules
 
 108.9
Adult Fat Body
 
 77.7
Adult Salivary Gland
 
 197.2
Adult Heart
 
 133.55
Adult VirginFemale Spermatheca
 
 62.4
Adult InseminatedFemale Spermatheca
 
 69.1
Adult Ovary
 
 340.2
Adult Testis
 
 46.5
Adult Male Accessory Gland
 
 270.6
Adult Carcass
 
 121.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 375.525
Larval Midgut
 
 75.1
Larval Hindgut
 
 91.5
Larval Malpighian Tubules
 
 143.3
Larval Fat Body
 
 100.9
Larval Salivary Gland
 
 175.5
Larval Trachea
 
 211.25
Larval Carcass
 
 145.85
Adult Head
 
 206.3
Adult Eye
 
 333.175
Adult Brain
 
 550.9
Adult Thoracic-Abdominal Ganglion
 
 382.6
Adult Crop
 
 189.3
Adult Midgut
 
 93.2
Adult Hindgut
 
 149.6
Adult Malpighian Tubules
 
 108.9
Adult Fat Body
 
 77.7
Adult Salivary Gland
 
 197.2
Adult Heart
 
 133.55
Adult VirginFemale Spermatheca
 
 62.4
Adult InseminatedFemale Spermatheca
 
 69.1
Adult Ovary
 
 340.2
Adult Testis
 
 46.5
Adult Male Accessory Gland
 
 270.6
Adult Carcass
 
 121.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body
 
 
Adult Salivary Gland
 
 
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass
 
 

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 206.3
 
NA 
Eye
 
 333.175
 
NA 
Brain
 
 550.9
 
375.525 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 382.6
 
NA 
Crop
 
 189.3
 
75.1 
Midgut
 
 93.2
 
91.5 
Hindgut
 
 149.6
 
143.3 
Malpighian Tubules
 
 108.9
 
100.9 
Fat Body
 
 77.7
 
175.5 
Salivary Gland
 
 197.2
 
NA 
Heart
 
 133.55
 
211.25 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 62.4
 
NA 
InseminatedFemale Spermatheca
 
 69.1
 
NA 
Ovary
 
 340.2
 
NA 
Testis
 
 46.5
 
NA 
Male Accessory Gland
 
 270.6
 
145.85 
Carcass
 
 121.4

modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
hide Classical Alleles ( 0 )
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Allele of Taf12ClassMutagenStocksKnown lesion
hide Alleles Carried on Transgenic Constructs ( 4 )
For All Alleles Carried on Transgenic Constructs Show

Allele of Taf12ClassMutagenStocksKnown lesion
Taf12GD41491 Yes
Taf12HMS001701 Yes
Taf12dsRNA.cWa0 Yes
Taf12KK1080540 Yes
hide Aneuploid Aberrations
Disrupted in
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Transgenic Constructs
Type of construct
Name
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Type of insertions
Name
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hide Gene Ontology: Function, Process & Cellular Component ( 11 unique terms )
hide Terms Based on Experimental Evidence ( 8 terms )
Molecular Function
CV term
References
inferred from physical interaction with Taf12
inferred from physical interaction with Taf1
inferred from physical interaction with Taf4
Biological Process
CV term
References
inferred from mutant phenotype
Cellular Component
CV term
References
inferred from direct assay
hide Terms Based on Predictions or Assertions ( 5 terms )
Molecular Function
CV term
References
inferred from electronic annotation with InterPro:IPR009072
Biological Process
CV term
References
inferred from sequence or structural similarity with human TAF12 AND inferred from sequence or structural similarity with Saccharomyces TAF61
Cellular Component
CV term
References
non-traceable author statement
inferred from sequence or structural similarity with human TAF12 AND inferred from sequence or structural similarity with Saccharomyces TAF61
hide Sequence Ontology: Class of Gene
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hide Summary of Physical Interactions
Protein-protein
Interacting group
Assay
References
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Interacts with
Please look at the allele data for full details of the genetic interactions
Taf12 allele
Gene
References
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Linkouts
BioGRID - A database of protein and genetic interactions
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs
Linkouts
InParanoid A subset of ortholog calls from InParanoid.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 2 )
Bloomington
VDRC
hide Genomic Clones ( 1 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 39 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
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Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
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Source for database identity of
Source for database merge of
Additional comments
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dsRNA has been made from templates generated with primers directed against this gene.
The proteins encoded by Taf4, Taf5, Taf6, e(y)1 and Taf12 form a core sub-complex of TFIID.
Does not interact, in vitro, with human thryroid-hormone receptor-β.
The assembly and purification of various functional Tbp TAF complexes demonstrate that Tbp plus the TAFs is sufficient to replace endogenous TFIID to support activated transcription in vitro.
The 28kD and 22kD proteins are products of the same gene, with the smaller being an N-truncated version of the larger. TFIID subunit proteins and the Tbp protein can interact in pairwise combinations with several subunits in a network of interactions within TFIID.
A number of polypeptides (encoded by Taf1, Taf4, Taf5, Taf6, e(y)1 and Taf12) that are tightly associated with Tbp and are native TFIID components have been purified. Protein blotting experiments suggest that one of these proteins, Taf1, interacts directly with Tbp, while the association between Tbp and the other proteins is either weak or is an indirect association via Taf1.
Taf12 and Taf11 join the TfIID complex through interaction with one or more of the larger subunits and only Taf12 may be in contact with Tbp.
A TATA-dependent protein-DNA complex is found in fractionated embryonic nuclear extracts. DNase I footprint analysis identifies polypeptides (including Taf12, Tbp and RpII140) that require the Hsp70Bb TATA element for binding to regions of the Hsp70Bb promoter.
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Linkouts
BioGRID - A database of protein and genetic interactions
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InParanoid A subset of ortholog calls from InParanoid.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Synonyms & Secondary IDs ( 41 )
Reported As
Symbol Synonym
d28/22
dmTAF12
dTAFII30α/22
dTAFII30 alpha
Taf22
 
Taf28
 
TAF30α/28/22
Taf32
 
TAFII30α/28/22
TAFII30α/28 TAFII22
TAFII230
TAFII30α/22
TFIID-p28
 
Name Synonym
26kDa polypeptide
TBP-associated factor
TBP-associated factor 12
 
Secondary FlyBase IDs
  • FBgn0011303
  • FBgn0011304
hide References ( 77 )
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hide Recent research papers ( 2 )
Neumüller et al., 2011, Cell Stem Cell 8(5): 580--593
Genome-Wide Analysis of Self-Renewal in Drosophila Neural Stem Cells by Transgenic RNAi. [FBrf0213621]
Weake et al., 2011, Genes Dev. 25(14): 1499--1509
Post-transcription initiation function of the ubiquitous SAGA complex in tissue-specific gene activation. [FBrf0214372]
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All reviews listed in FlyBase were published before 2010