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Gene Dmel\Acp36DE

General Information
Symbol	Dmel\Acp36DE	Species	D. melanogaster
Name	Accessory gland protein 36DE	Annotation symbol	CG7157
Feature type	protein_coding_gene	FlyBase ID	FBgn0011559
Gene Model Status	Current	Stock availability	3 publicly available
Genomic Location
Chromosome (arm)	2L	Recombination map
Cytogenetic map	36F3-36F3	Sequence location	2L:18,356,047..18,359,026 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Accessory gland protein 36DE is referred to in FlyBase by the symbol Dmel\Acp36DE (CG7157, FBgn0011559). It is a protein_coding_gene from Drosophila melanogaster. It is reported to have molecular function: hormone activity. There is experimental evidence that it is involved in the biological process: sperm competition; multicellular organism reproduction; sperm storage. 13 alleles are reported. The phenotypes of these alleles are annotated with: female reproductive system; uterus. It has 2 annotated transcripts and 2 annotated polypeptides. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of no expression detected. Peak expression observed in adult male stages. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult male accessory gland. Expression at moderate levels in the following post-embryonic organs or tissues: adult testis, adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1628459_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of Acp36DE. Gene sequence location is 2L:18356125..18359026.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03	Polypeptides Acp36DE-PB Transcripts Acp36DE-RB
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 36F3-36F3   Limits computationally determined from genome sequence between P{lacW}Aac11k06710 and P{EP}CG10413EP2164
Experimentally Determined Cytological Location
Cytogenetic map Notes References 36D-36E     (Wolfner, 1999.6.8) 36D-36E   (determined by in situ hybridisation)   (Wolfner et al., 1997)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\Acp36DE for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.51
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Acp36DE-RA FBtr0081054  NM_078870   2843   912 Acp36DE-RB FBtr0340581     2921   912
Additional Transcript Data & Comments
Reported size (kB)	2.7 (northern blot) (Wolfner et al., 1997)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Acp36DE-PA   FBpp0080607   101.9   912   9.57     NP_523594   AAF53664 Acp36DE-PB   FBpp0309468   101.9   912   9.57
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014134 AAF53664   AF145666 AAD38641   AF157488 AAD40185   AI109272   AI133970   AI135551   AI135623   AI387036   AI388549   AI389566   AI402256   AI403827   AX154706   AY010577 AAG37359   AY010578 AAG37360   AY010579 AAG37361   AY010580 AAG37362   AY010581 AAG37363   AY010582 AAG37364   AY010583 AAG37365   AY010584 AAG37366   AY010585 AAG37367   AY010586 AAG37368   AY010587 AAG37369   AY010588 AAG37370   AY010589 AAG37371   AY010590 AAG37372   AY010591 AAG37373   AY010592 AAG37374   AY113344 AAM29349   BF486497   BF487284   BF487933   BF488721   BF488899   BF491252   BF493256   BF495396   BF496078   BF496626   BF496967   BF497975   BF498078   BF498701   BF498788   BF498841   BF499193   BF500090   BF501152   BF501475   BF501483   BF502266   BF502298   BF503147   BF503492   BF503774   BF504225   BF504824   BF505554   BF505774   BF506151   BG634695   U85759 AAB96383
UniProtKB/Swiss-Prot	Q9V3R1
UniProtKB/TrEMBL
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
expression microarray Stage Tissue/Position (including subcellular localization) Reference adult stage | male     (Arbeitman et al., 2004) in situ Stage Tissue/Position (including subcellular localization) Reference adult stage | male   male accessory gland main cell   (Wolfner et al., 1997) male accessory gland   (Wolfner et al., 1997) northern blot Stage Tissue/Position (including subcellular localization) Reference adult stage | male     (Arbeitman et al., 2004)
Additional Descriptive Data
	Expression is not detected in the secondary cells of the accessory gland. (Wolfner et al., 1997)
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
immunolocalization Stage Tissue/Position (including subcellular localization) Reference adult stage | mated female   uterus   (Lee et al., 2001) mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 5 of adulthood & male -- day 7 of adulthood & male   spermatozoon   (Wasbrough et al., 2010) western blot Stage Tissue/Position (including subcellular localization) Reference adult stage | mated female   spermathecum   (Qazi and Wolfner, 2003) seminal receptacle   (Qazi and Wolfner, 2003)
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
extracellular space inferred from direct assay (Findlay et al., 2009, Walker et al., 2006, Findlay et al., 2008)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult male accessory gland. Expression at moderate levels in the following post-embryonic organs or tissues: adult testis, adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    5.15 Larval Midgut    12.7 Larval Hindgut    4.5 Larval Malpighian Tubules    6.5 Larval Fat Body    13.2 Larval Salivary Gland    5.8 Larval Trachea    9.35 Larval Carcass    4.125 Adult Head    6.4 Adult Eye    6.6 Adult Brain    3.6 Adult Thoracic-Abdominal Ganglion    4.4 Adult Crop    5.9 Adult Midgut    7.1 Adult Hindgut    4.6 Adult Malpighian Tubules    6.3 Adult Fat Body    10.6 Adult Salivary Gland    13.3 Adult Heart    4.775 Adult VirginFemale Spermatheca    9.3 Adult InseminatedFemale Spermatheca    9.2 Adult Ovary    12.6 Adult Testis    183 Adult Male Accessory Gland    13486.5 Adult Carcass    166.7 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    5.15 Larval Midgut    12.7 Larval Hindgut    4.5 Larval Malpighian Tubules    6.5 Larval Fat Body    13.2 Larval Salivary Gland    5.8 Larval Trachea    9.35 Larval Carcass    4.125 Adult Head    6.4 Adult Eye    6.6 Adult Brain    3.6 Adult Thoracic-Abdominal Ganglion    4.4 Adult Crop    5.9 Adult Midgut    7.1 Adult Hindgut    4.6 Adult Malpighian Tubules    6.3 Adult Fat Body    10.6 Adult Salivary Gland    13.3 Adult Heart    4.775 Adult VirginFemale Spermatheca    9.3 Adult InseminatedFemale Spermatheca    9.2 Adult Ovary    12.6 Adult Testis    183 Adult Male Accessory Gland  (13486.5) Adult Carcass    166.7 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    5.15 Larval Midgut    12.7 Larval Hindgut    4.5 Larval Malpighian Tubules    6.5 Larval Fat Body    13.2 Larval Salivary Gland    5.8 Larval Trachea    9.35 Larval Carcass    4.125 Adult Head    6.4 Adult Eye    6.6 Adult Brain    3.6 Adult Thoracic-Abdominal Ganglion    4.4 Adult Crop    5.9 Adult Midgut    7.1 Adult Hindgut    4.6 Adult Malpighian Tubules    6.3 Adult Fat Body    10.6 Adult Salivary Gland    13.3 Adult Heart    4.775 Adult VirginFemale Spermatheca    9.3 Adult InseminatedFemale Spermatheca    9.2 Adult Ovary    12.6 Adult Testis    183 Adult Male Accessory Gland  (13486.5) Adult Carcass    166.7 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    5.15 Larval Midgut    12.7 Larval Hindgut    4.5 Larval Malpighian Tubules    6.5 Larval Fat Body    13.2 Larval Salivary Gland    5.8 Larval Trachea    9.35 Larval Carcass    4.125 Adult Head    6.4 Adult Eye    6.6 Adult Brain    3.6 Adult Thoracic-Abdominal Ganglion    4.4 Adult Crop    5.9 Adult Midgut    7.1 Adult Hindgut    4.6 Adult Malpighian Tubules    6.3 Adult Fat Body    10.6 Adult Salivary Gland    13.3 Adult Heart    4.775 Adult VirginFemale Spermatheca    9.3 Adult InseminatedFemale Spermatheca    9.2 Adult Ovary    12.6 Adult Testis    183 Adult Male Accessory Gland    13486.5 Adult Carcass    166.7 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    5.15 Larval Midgut    12.7 Larval Hindgut    4.5 Larval Malpighian Tubules    6.5 Larval Fat Body    13.2 Larval Salivary Gland    5.8 Larval Trachea    9.35 Larval Carcass    4.125 Adult Head    6.4 Adult Eye    6.6 Adult Brain    3.6 Adult Thoracic-Abdominal Ganglion    4.4 Adult Crop    5.9 Adult Midgut    7.1 Adult Hindgut    4.6 Adult Malpighian Tubules    6.3 Adult Fat Body    10.6 Adult Salivary Gland    13.3 Adult Heart    4.775 Adult VirginFemale Spermatheca    9.3 Adult InseminatedFemale Spermatheca    9.2 Adult Ovary    12.6 Adult Testis    183 Adult Male Accessory Gland    13486.5 Adult Carcass    166.7 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    5.15 Larval Midgut    12.7 Larval Hindgut    4.5 Larval Malpighian Tubules    6.5 Larval Fat Body    13.2 Larval Salivary Gland    5.8 Larval Trachea    9.35 Larval Carcass    4.125 Adult Head    6.4 Adult Eye    6.6 Adult Brain    3.6 Adult Thoracic-Abdominal Ganglion    4.4 Adult Crop    5.9 Adult Midgut    7.1 Adult Hindgut    4.6 Adult Malpighian Tubules    6.3 Adult Fat Body    10.6 Adult Salivary Gland    13.3 Adult Heart    4.775 Adult VirginFemale Spermatheca    9.3 Adult InseminatedFemale Spermatheca    9.2 Adult Ovary    12.6 Adult Testis    183 Adult Male Accessory Gland  (13486.5) Adult Carcass    166.7 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    5.15 Larval Midgut    12.7 Larval Hindgut    4.5 Larval Malpighian Tubules    6.5 Larval Fat Body    13.2 Larval Salivary Gland    5.8 Larval Trachea    9.35 Larval Carcass    4.125 Adult Head    6.4 Adult Eye    6.6 Adult Brain    3.6 Adult Thoracic-Abdominal Ganglion    4.4 Adult Crop    5.9 Adult Midgut    7.1 Adult Hindgut    4.6 Adult Malpighian Tubules    6.3 Adult Fat Body    10.6 Adult Salivary Gland    13.3 Adult Heart    4.775 Adult VirginFemale Spermatheca    9.3 Adult InseminatedFemale Spermatheca    9.2 Adult Ovary    12.6 Adult Testis    183 Adult Male Accessory Gland  (13486.5) Adult Carcass    166.7 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    5.15 Larval Midgut    12.7 Larval Hindgut    4.5 Larval Malpighian Tubules    6.5 Larval Fat Body    13.2 Larval Salivary Gland    5.8 Larval Trachea    9.35 Larval Carcass    4.125 Adult Head    6.4 Adult Eye    6.6 Adult Brain    3.6 Adult Thoracic-Abdominal Ganglion    4.4 Adult Crop    5.9 Adult Midgut    7.1 Adult Hindgut    4.6 Adult Malpighian Tubules    6.3 Adult Fat Body    10.6 Adult Salivary Gland    13.3 Adult Heart    4.775 Adult VirginFemale Spermatheca    9.3 Adult InseminatedFemale Spermatheca    9.2 Adult Ovary    12.6 Adult Testis    183 Adult Male Accessory Gland    13486.5 Adult Carcass    166.7 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    6.4   NA  Eye    6.6   NA  Brain    3.6   5.15  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    4.4   NA  Crop    5.9   12.7  Midgut    7.1   4.5  Hindgut    4.6   6.5  Malpighian Tubules    6.3   no informative data  Fat Body    10.6   5.8  Salivary Gland    no informative data   NA  Heart    4.775   9.35  Trachea    NA   NA  VirginFemale Spermatheca    9.3   NA  InseminatedFemale Spermatheca    9.2   NA  Ovary    no informative data   NA  Testis    183   NA  Male Accessory Gland    13486.5   4.125  Carcass    166.7 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    73 digestive system, 4-day adult    48 digestive system, 20-day adult    10 fat body, larvae L3 wandering    0 fat body, white prepupae    1 fat body, pupae P8    3 carcass, larvae L3 wandering    0 carcass, 1-day adult    22 carcass, 4-day adult    13 carcass, 20-day adult    23 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    287 accessory gland, mated 4-day male    6268 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult  (73) digestive system, 4-day adult  (48) digestive system, 20-day adult    10 fat body, larvae L3 wandering    0 fat body, white prepupae    1 fat body, pupae P8    3 carcass, larvae L3 wandering    0 carcass, 1-day adult    22 carcass, 4-day adult    13 carcass, 20-day adult    23 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male  (287) accessory gland, mated 4-day male  (6268) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    73 digestive system, 4-day adult    48 digestive system, 20-day adult    10 fat body, larvae L3 wandering    0 fat body, white prepupae    1 fat body, pupae P8    3 carcass, larvae L3 wandering    0 carcass, 1-day adult    22 carcass, 4-day adult    13 carcass, 20-day adult    23 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male  (287) accessory gland, mated 4-day male  (6268) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    73 digestive system, 4-day adult    48 digestive system, 20-day adult    10 fat body, larvae L3 wandering    0 fat body, white prepupae    1 fat body, pupae P8    3 carcass, larvae L3 wandering    0 carcass, 1-day adult    22 carcass, 4-day adult    13 carcass, 20-day adult    23 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    287 accessory gland, mated 4-day male    6268 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    73 digestive system, 4-day adult    48 digestive system, 20-day adult    10 fat body, larvae L3 wandering    0 fat body, white prepupae    1 fat body, pupae P8    3 carcass, larvae L3 wandering    0 carcass, 1-day adult    22 carcass, 4-day adult    13 carcass, 20-day adult    23 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    287 accessory gland, mated 4-day male    6268 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult  (73) digestive system, 4-day adult  (48) digestive system, 20-day adult    10 fat body, larvae L3 wandering    0 fat body, white prepupae    1 fat body, pupae P8    3 carcass, larvae L3 wandering    0 carcass, 1-day adult    22 carcass, 4-day adult    13 carcass, 20-day adult    23 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male  (287) accessory gland, mated 4-day male  (6268) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    73 digestive system, 4-day adult    48 digestive system, 20-day adult    10 fat body, larvae L3 wandering    0 fat body, white prepupae    1 fat body, pupae P8    3 carcass, larvae L3 wandering    0 carcass, 1-day adult    22 carcass, 4-day adult    13 carcass, 20-day adult    23 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male  (287) accessory gland, mated 4-day male  (6268) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    73 digestive system, 4-day adult    48 digestive system, 20-day adult    10 fat body, larvae L3 wandering    0 fat body, white prepupae    1 fat body, pupae P8    3 carcass, larvae L3 wandering    0 carcass, 1-day adult    22 carcass, 4-day adult    13 carcass, 20-day adult    23 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    287 accessory gland, mated 4-day male    6268 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of no expression detected. Peak expression observed in adult male stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    0 white prepupae 12hr    0 white prepupae 24hr    0 pupae 2d postWPP    1 pupae 3d postWPP    0 pupae 4d postWPP    39 adult male 01day    604 adult male 05day    689 adult male 30day    402 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    0 white prepupae 12hr    0 white prepupae 24hr    0 pupae 2d postWPP    1 pupae 3d postWPP    0 pupae 4d postWPP  (39) adult male 01day  (604) adult male 05day  (689) adult male 30day  (402) adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    0 white prepupae 12hr    0 white prepupae 24hr    0 pupae 2d postWPP    1 pupae 3d postWPP    0 pupae 4d postWPP    39 adult male 01day  (604) adult male 05day  (689) adult male 30day  (402) adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    0 white prepupae 12hr    0 white prepupae 24hr    0 pupae 2d postWPP    1 pupae 3d postWPP    0 pupae 4d postWPP    39 adult male 01day    604 adult male 05day    689 adult male 30day    402 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    0 white prepupae 12hr    0 white prepupae 24hr    0 pupae 2d postWPP    1 pupae 3d postWPP    0 pupae 4d postWPP    39 adult male 01day    604 adult male 05day    689 adult male 30day    402 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    0 white prepupae 12hr    0 white prepupae 24hr    0 pupae 2d postWPP    1 pupae 3d postWPP    0 pupae 4d postWPP  (39) adult male 01day  (604) adult male 05day  (689) adult male 30day  (402) adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    0 white prepupae 12hr    0 white prepupae 24hr    0 pupae 2d postWPP    1 pupae 3d postWPP    0 pupae 4d postWPP    39 adult male 01day  (604) adult male 05day  (689) adult male 30day  (402) adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    0 white prepupae 12hr    0 white prepupae 24hr    0 pupae 2d postWPP    1 pupae 3d postWPP    0 pupae 4d postWPP    39 adult male 01day    604 adult male 05day    689 adult male 30day    402 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    1 ovary OSC    3 ovary OSS    5 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    1 ovary OSC    3 ovary OSS    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    1 ovary OSC    3 ovary OSS    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    1 ovary OSC    3 ovary OSS    5 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    1 ovary OSC    3 ovary OSS    5 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    1 ovary OSC    3 ovary OSS    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    1 ovary OSC    3 ovary OSS    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    1 ovary OSC    3 ovary OSS    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    40 cold shock, 4-day adult    40 heat shock, 4-day adult    69 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    1 Cadmium 50 mM 48 hrs, 4-day adult    2 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    0 Copper 15 mM 48 hrs, 4-day adult    14 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    83 Ethanol 2.5% 3 hrs, larvae L3    92 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    0 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    2 Caffeine 25 mg/ml 48 hrs, 4-day adult    35 Paraquat 5 mM 48 hrs, 4-day adult    146 Paraquat 10 mM 48 hrs, 4-day adult    68 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (40) cold shock, 4-day adult  (40) heat shock, 4-day adult  (69) Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    1 Cadmium 50 mM 48 hrs, 4-day adult    2 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    0 Copper 15 mM 48 hrs, 4-day adult    14 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult  (83) Ethanol 2.5% 3 hrs, larvae L3  (92) Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    0 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    2 Caffeine 25 mg/ml 48 hrs, 4-day adult  (35) Paraquat 5 mM 48 hrs, 4-day adult  (146) Paraquat 10 mM 48 hrs, 4-day adult  (68) Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    40 cold shock, 4-day adult    40 heat shock, 4-day adult    69 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    1 Cadmium 50 mM 48 hrs, 4-day adult    2 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    0 Copper 15 mM 48 hrs, 4-day adult    14 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    83 Ethanol 2.5% 3 hrs, larvae L3    92 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    0 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    2 Caffeine 25 mg/ml 48 hrs, 4-day adult    35 Paraquat 5 mM 48 hrs, 4-day adult  (146) Paraquat 10 mM 48 hrs, 4-day adult    68 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    40 cold shock, 4-day adult    40 heat shock, 4-day adult    69 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    1 Cadmium 50 mM 48 hrs, 4-day adult    2 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    0 Copper 15 mM 48 hrs, 4-day adult    14 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    83 Ethanol 2.5% 3 hrs, larvae L3    92 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    0 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    2 Caffeine 25 mg/ml 48 hrs, 4-day adult    35 Paraquat 5 mM 48 hrs, 4-day adult    146 Paraquat 10 mM 48 hrs, 4-day adult    68 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    40 cold shock, 4-day adult    40 heat shock, 4-day adult    69 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    1 Cadmium 50 mM 48 hrs, 4-day adult    2 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    0 Copper 15 mM 48 hrs, 4-day adult    14 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    83 Ethanol 2.5% 3 hrs, larvae L3    92 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    0 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    2 Caffeine 25 mg/ml 48 hrs, 4-day adult    35 Paraquat 5 mM 48 hrs, 4-day adult    146 Paraquat 10 mM 48 hrs, 4-day adult    68 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (40) cold shock, 4-day adult  (40) heat shock, 4-day adult  (69) Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    1 Cadmium 50 mM 48 hrs, 4-day adult    2 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    0 Copper 15 mM 48 hrs, 4-day adult    14 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult  (83) Ethanol 2.5% 3 hrs, larvae L3  (92) Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    0 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    2 Caffeine 25 mg/ml 48 hrs, 4-day adult  (35) Paraquat 5 mM 48 hrs, 4-day adult  (146) Paraquat 10 mM 48 hrs, 4-day adult  (68) Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    40 cold shock, 4-day adult    40 heat shock, 4-day adult    69 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    1 Cadmium 50 mM 48 hrs, 4-day adult    2 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    0 Copper 15 mM 48 hrs, 4-day adult    14 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    83 Ethanol 2.5% 3 hrs, larvae L3    92 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    0 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    2 Caffeine 25 mg/ml 48 hrs, 4-day adult    35 Paraquat 5 mM 48 hrs, 4-day adult  (146) Paraquat 10 mM 48 hrs, 4-day adult    68 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    40 cold shock, 4-day adult    40 heat shock, 4-day adult    69 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    1 Cadmium 50 mM 48 hrs, 4-day adult    2 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    0 Copper 15 mM 48 hrs, 4-day adult    14 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    83 Ethanol 2.5% 3 hrs, larvae L3    92 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    0 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    2 Caffeine 25 mg/ml 48 hrs, 4-day adult    35 Paraquat 5 mM 48 hrs, 4-day adult    146 Paraquat 10 mM 48 hrs, 4-day adult    68 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (Graveley et al., 2011) mE1_20_mRNA_expression_cluster_20
External Data & Images
Linkouts	BDGP expression data • GH13354 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0011559 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG7157-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal, with Scer\GAL4pnr-MD237 Acp36DEGD5318 viable Acp36DEN1 Sterility Allele male fertile Acp36DEP male sterile | partially | recessive Acp36DEN1 Phenotype manifest in Allele female reproductive system, with Scer\GAL4αTub84B.PL Acp36DEGD5318 Acp36DEdsRNA.Sym.Scer\UAS uterus, with Scer\GAL4αTub84B.PL Acp36DEGD5318 Acp36DEdsRNA.Sym.Scer\UAS
Classical Alleles ( 9 )
For All Classical Alleles Show
Allele of Acp36DE Class Mutagen Stocks Known lesion Acp36DE1 0 -- Acp36DE2 0 -- Acp36DE3 0 -- Acp36DE4 0 -- Acp36DEM36F-2 0 -- Acp36DEM36F-S6 0 -- Acp36DEN1 ethyl methanesulfonate 0 Yes Acp36DEN2 ethyl methanesulfonate 0 -- Acp36DEP P-element activity 0 Yes
Alleles Carried on Transgenic Constructs ( 4 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Acp36DE Class Mutagen Stocks Known lesion Acp36DEGD5318 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes Acp36DEKK103546 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Acp36DEdsRNA.Sym.Scer\UAS in vitro construct - regulatory fusion in vitro construct - RNAi 0 Yes Acp36DENIG.7157R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(2L)Exel8038 (Ryder, 2004.4.26) Df(2L)H20 (Marygold, 2005.1.19)
Partially disrupted in	Df(2L)M36F-2 (Marygold, 2005.1.19) Df(2L)M36F-S6 (Marygold, 2005.1.19)
Not disrupted in	Df(2L)TW50 (Marygold, 2005.1.19)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD5318} NA P{KK103546} NA P{NIG.7157R} NA
Insertions
	Type of insertions Name Expression data insertion of enhancer trap P{lacW}l(2)SH0133SH0133 No miscellaneous insertions P{}Acp36DEP NA
Gene Ontology: Function, Process & Cellular Component ( 9 unique terms )
Terms Based on Experimental Evidence ( 4 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
multicellular organism reproduction inferred from expression pattern (Findlay et al., 2009, Findlay et al., 2008, Mueller et al., 2005, Swanson et al., 2001) sperm competition inferred from direct assay (Avila and Wolfner, 2009) sperm storage inferred from mutant phenotype (Chapman et al., 2000, Avila and Wolfner, 2009, Qazi and Wolfner, 2003)
Cellular Component
CV term Evidence References
extracellular space inferred from direct assay (Findlay et al., 2009, Walker et al., 2006, Findlay et al., 2008)
Terms Based on Predictions or Assertions ( 8 terms )
Molecular Function
CV term Evidence References
hormone activity non-traceable author statement (FlyBase, 1992-) non-traceable author statement (assigned by UniProtKB) (Wolfner et al., 1997)
Biological Process
CV term Evidence References
mating plug formation traceable author statement (Chapman, 2001) negative regulation of female receptivity, post-mating non-traceable author statement (assigned by UniProtKB) (Wolfner et al., 1997) sperm competition traceable author statement (Chapman, 2001) sperm displacement non-traceable author statement (FlyBase, 1992-) sperm storage traceable author statement (Karr and Pitnick, 1999, Chapman, 2001, Wolfner, 2002, Qazi et al., 2003)
Cellular Component
CV term Evidence References
extracellular region inferred from sequence model (Swanson et al., 2001) non-traceable author statement (FlyBase, 1992-) traceable author statement (assigned by UniProtKB) (Wolfner et al., 1997) extracellular space inferred from sequence model (Mueller et al., 2005)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Acp36DE allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 61091 DroID - A comprehensive database of gene and protein interactions. • FBgn0011559 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 35096
Orthologs
OrthoDB Orthologs (5) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG618C7D Dipteran inclusive ortholog search No orthologs identified Insect inclusive ortholog search No orthologs identified Arthropod inclusive ortholog search No orthologs identified Metazoa inclusive ortholog search No orthologs identified
Orthologs in Drosophila Species (EOG618C7D)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\Acp36DE     Drosophila simulans   Dsim\Acp36DE Y   Drosophila sechellia   Dsec\Acp36DE Y   Drosophila erecta   Dere\GG16558 Y   Drosophila yakuba   Dyak\GE18098 Y
Orthologs in non-Drosophila Dipterans (None identified)
No non-Drosophilid orthologies identified
Orthologs in non-Dipteran Insects (None identified)
No non-Dipteran orthologies identified
Orthologs in non-Insect Arthropods (None identified)
No non-Insect Arthropod orthologies identified
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (4) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\Acp36DE Drosophila sechellia Dsec\Acp36DE Drosophila erecta Dere\GG16558 Drosophila yakuba Dyak\GE18098
Stocks & Reagents
Stocks Listed in FlyBase ( 3 )
VDRC	v105453 P{KK103546}VIE-260B v37992 w1118; P{GD5318}v37992/TM3 v37993 w1118; P{GD5318}v37993/TM3
Genomic Clones ( 3 )
	BACR01A03 BACR04D05 BACR05N10 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 40 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH11288 GH13354
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT01571 AT04974 AT05543 AT06855 AT07803 AT08153 AT08549 AT09878 AT10511 AT10989 AT12319 AT12438 AT13156 AT13394 AT16391 AT16828 AT16838 AT17939 AT19061 AT19487 AT20818 AT23061 AT24331 AT24574 AT27953 AT31002 GH08411 GH13444 GH17453 GH19492 GH20778 GH23349
Other clones	AT04234 AT13260 AT13710 AT14892 AT17978 AT22039
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0011559 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 35096
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: Acp36DE anon-WO0140519.55 (FlyBase, 1996-)
Additional comments	"Acp36DE" may correspond to "AcpC", unfortunately strains of "AcpC" are no longer extant. (Wolfner et al., 1997) Source for merge of Acp36DE anon-WO0140519.55 was sequence comparison (date:051113). (FlyBase, 1996-)
Other Comments
	Not required for viability. (Marygold, 2005.1.19) Males null for Acp36DE do poorly in fertilisations as second-mating males because fewer sperm are stored or retained in mated females, not because Acp36DE protein itself displaces sperm. (Chapman et al., 2000) Male derived Acp36DE protein is essential for efficient sperm storage by females; it is essential for the initial storage of sperm and may also influence the arrangement and retention of stored sperm. (Neubaum and Wolfner, 1999) Gene is identified in a differential cDNA hybridisation screen. (Wolfner et al., 1997) Acp36DE seminal fluid protein is localised in the mated female suggesting a function of the protein in restricting sperm to an area in the mated female's genital tract (just above the openings of the sperm storage organs) that facilitates sperm storage. (Bertram et al., 1996) If females remate frequently relative to the duration of sperm storage and rate of sperm use, sperm displacement may be an important component of male reproductive success. Significant association has been found between Acp36DE mutant male sperm and the ability to resist displacement by subsequent sperm. There is no correlation between the ability to displace resident sperm and the ability to resist being displaced by subsequent sperm, this lack of correlation suggests that different mechanisms mediate that the two components of sperm displacement. (Clark et al., 1995) Acp36DE gene product is a seminal fluid protein whose fate after mating is consistent with a role in sperm storage. (Neubaum et al., 1995) Screening of natural populations for P-element tagged genes has identified an insert within 2kb of Acp36DE. (Clark et al., 1994) May promote replacement of sperm already stored by a female.
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_078870 RefSeq (Proteins) • NP_523594 DDBJ / EMBL / GenBank • AAB96383 AAD38641 AAD40185 AAF53664 AAG37359 AAG37360 AAG37361 AAG37362 AAG37363 AAG37364 AAG37365 AAG37366 AAG37367 AAG37368 AAG37369 AAG37370 AAG37371 AAG37372 AAG37373 AAG37374 AAM29349 AF145666 AF157488 AI133970 AI135551 AI402256 AX154706 AY010577 AY010578 AY010579 AY010580 AY010581 AY010582 AY010583 AY010584 AY010585 AY010586 AY010587 AY010588 AY010589 AY010590 AY010591 AY010592 AY113344 U85759 Entrez Gene - A searchable database of RefSeq genes. • 35096 UniProtKB/Swiss-Prot • Q9V3R1
Other Crossreferences
	BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • GH13354
Linkouts
	BioGRID - A database of protein and genetic interactions • 61091 DroID - A comprehensive database of gene and protein interactions. • FBgn0011559 DRSC - Results from RNAi screens. • FBgn0011559 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0011559 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG7157-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0011559 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 35096 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 35096 modMine - Data generated by the modENCODE project. • FBgn0011559
Synonyms & Secondary IDs ( 10 )
Reported As
Symbol Synonym	Acp (Adams and Wolfner, 2007) Acp36D (Geng and MacDonald, 2007) Acp36DE (Mueller et al., 2008, Ravi Ram and Wolfner, 2007, Ravi Ram et al., 2005, Avila, 2008, Lee et al., 2001, Ravi Ram et al., 2006, Ram and Wolfner, 2007, Siddique et al., 2009, Wagstaff and Begun, 2005, McGraw et al., 2008, Wong et al., 2008, Ayroles et al., 2009, Takemori and Yamamoto, 2009, Findlay et al., 2009, Qazi and Wolfner, 2003, Avila and Wolfner, 2009, Curtis et al., 2007, Wasbrough et al., 2010, Wasbrough et al., 2010, Walker et al., 2006, Laflamme et al., 2012, Japanese National Institute of Genetics, 2012.5.21, Wong et al., 2012, Ravi Ram and Wolfner, 2007) anon-WO0140519.55   CG7157 (Arbeitman et al., 2004, Labourier et al., 2002, Keleman et al., 2009.8.5, Walker et al., 2006, Wong et al., 2012) CT22109 (Ceriani et al., 2002)
Name Synonym	36DE accessory gland protein (Zou et al., 2000, Wolfner, 1999.6.8) Accessory gland peptide 36DE (Takemori and Yamamoto, 2009) Accessory gland protein (Wolfner et al., 1997) Accessory gland protein 36DE
Secondary FlyBase IDs
	FBgn0044574
References ( 89 )
Generate a list of	All references relating to this gene ( 89 )
List References by type	Research paper  ( 47 ) Supplementary material  ( 9 ) Review  ( 9 ) Personal communication to FlyBase  ( 5 ) Abstract  ( 10 ) FlyBase analysis  ( 3 ) DNA/RNA sequence record  ( 2 ) Stock list  ( 1 ) Curated genome annotation  ( 1 ) Patent  ( 1 ) Letter  ( 1 )
Recent research papers ( 5 )
	Zhang et al., 2013, Mol. Ecol. 22(5): 1400--1415 Natural genetic variation in male reproductive genes contributes to nontransitivity of sperm competitive ability in Drosophila melanogaster. [FBrf0220937] Laflamme et al., 2012, PLoS Genet. 8(1): e1002435 The Drosophila melanogaster Seminal Fluid Protease "Seminase" Regulates Proteolytic and Post-Mating Reproductive Processes. [FBrf0217192] Wong et al., 2012, Mol. Biol. Evol. 29(1): 229--238 Temporally variable selection on proteolysis-related reproductive tract proteins in Drosophila. [FBrf0217443] Dottorini et al., 2011, BMC Bioinformatics 12: 34 Gepoclu: a software tool for identifying and analyzing gene positional clusters in large-scale gene expression analysis. [FBrf0214379] Yang et al., 2011, G3 (Bethesda) 1(6): 427--436 Partitioning transcript variation in Drosophila: abundance, isoforms, and alleles. [FBrf0217638] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2011 Show reviews ...