A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Gene Dmel\caz

General Information
SymbolDmel\cazSpeciesD. melanogaster
NamecabezaAnnotation symbolCG3606
Feature typeprotein_coding_geneFlyBase IDFBgn0011571
Gene Model StatusCurrent Stock availability 4 publicly available
Also Known AsSARFH, P19
Genomic Location
Chromosome (arm)XRecombination map1-
Cytogenetic map14B8-14B9Sequence locationX:16,182,843..16,187,553 [+]

Genomic Maps

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Automatically generated summary

See sections below for more information
The gene cabeza is referred to in FlyBase by the symbol Dmel\caz (CG3606, FBgn0011571). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: mRNA binding. There is experimental evidence that it is involved in the biological process: compound eye development; adult locomotory behavior; positive regulation of motor neuron apoptotic process; larval locomotory behavior. 14 alleles are reported. The phenotypes of these alleles are annotated with: eye disc; A1-7 ventral longitudinal muscle 3; A1-7 ventral longitudinal muscle 4; wing; ommatidium. It has 4 annotated transcripts and 4 annotated polypeptides. Protein features are: Nucleotide-binding, alpha-beta plait; RNA recognition motif domain; Zinc finger, RanBP2-type. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed within 00-18 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult eye, larval/adult central nervous system, adult Malpighian tubules, larval trachea, adult ovary. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult crop, larval/adult midgut, larval/adult hindgut, larval Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, adult spermathecae, adult male reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1634362_a_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of caz. Gene sequence location is X:16182843..16187553.

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Description
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FB2013_03
FB2013_02
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
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FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
14B8-14B9  
Limits computationally determined from genome sequence between P{EP}kat80EP620&P{EP}cazEP1564 and P{EP}Cyp1EP1073&P{EP}Dsp1EP355  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
14-14  
14B-14B  
(determined by in situ hybridisation)  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\caz for information on other features GBrowse View Help
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0074216 FBtr0074245 FBtr0100556 FBtr0334991 FBtr0334992 FBtr0334990 FBtr0074217 FBtr0074244 FBtr0074243 FBtr0074242 FBtr0074241 FBpp0073995 FBpp0100008 FBpp0074024 FBpp0307001 FBpp0307000 FBpp0073996 FBpp0307002 FBpp0074023 FBpp0074022 FBpp0074021 FBpp0074020 FBti0071557 FBti0011946 FBti0074769
Comments on Gene Model
Multiphase exon postulated: this gene shares a region of coding sequence with an overlapping gene, but different reading frames are utilized in the overlapping coding region.
Variable use of small exon; supported combination results in frameshift and premature stop in downstream exon.
Gene model reviewed during 5.47
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0074217
  1666
  399
FBtr0334990
  1621
  384
FBtr0334991
  1534
  355
FBtr0334992
  1631
  124
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
caz-PB  
FBpp0073996  
38.8  
399  
9.72  
caz-PC  
FBpp0307000  
37.3  
384  
9.78  
caz-PD  
FBpp0307001  
34.3  
355  
9.78  
caz-PE  
FBpp0307002  
13.7  
124  
11.71  
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
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DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
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Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
in situ
Stage
Tissue/Position (including subcellular localization)
Reference
Comment:maternally deposited
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
hide Polypeptide Expression
immunolocalization
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term
References
inferred from direct assay
inferred from direct assay
inferred from direct assay
hide Expression Deduced from Reporters
hide High-Throughput Expression Data
Associated Tools
Reference
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
hide FlyAtlas Anatomy Microarray

FlyAtlas Anatomical Expression Data

(FlyAtlas-RNA.adult)

(FlyAtlas-RNA.larva)


   Styles
   Scales

Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult eye, larval/adult central nervous system, adult Malpighian tubules, larval trachea, adult ovary. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult crop, larval/adult midgut, larval/adult hindgut, larval Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, adult spermathecae, adult male reproductive system, larval/adult carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (>999.999)

Linear, scaled to maximum expression level
Tissue   Expression Level
Larval Central Nervous System
 
 894.725
Larval Midgut
 
 275.2
Larval Hindgut
 
 329.9
Larval Malpighian Tubules
 
 336.8
Larval Fat Body
 
 335.8
Larval Salivary Gland
 
 419.1
Larval Trachea
 
 592.95
Larval Carcass
 
 337.575
Adult Head
 
 313.8
Adult Eye
 
 555.275
Adult Brain
 
 785
Adult Thoracic-Abdominal Ganglion
 
 607.4
Adult Crop
 
 281.6
Adult Midgut
 
 296.6
Adult Hindgut
 
 287.7
Adult Malpighian Tubules
 
 624.1
Adult Fat Body
 
 231.1
Adult Salivary Gland
 
 297.3
Adult Heart
 
 356.375
Adult VirginFemale Spermatheca
 
 348
Adult InseminatedFemale Spermatheca
 
 457.7
Adult Ovary
 
 724.1
Adult Testis
 
 147
Adult Male Accessory Gland
 
 167.4
Adult Carcass
 
 224.1
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 (894.725)
Larval Midgut
 
 275.2
Larval Hindgut
 
 329.9
Larval Malpighian Tubules
 
 336.8
Larval Fat Body
 
 335.8
Larval Salivary Gland
 
 419.1
Larval Trachea
 (592.95)
Larval Carcass
 
 337.575
Adult Head
 
 313.8
Adult Eye
 (555.275)
Adult Brain
 (785)
Adult Thoracic-Abdominal Ganglion
 (607.4)
Adult Crop
 
 281.6
Adult Midgut
 
 296.6
Adult Hindgut
 
 287.7
Adult Malpighian Tubules
 (624.1)
Adult Fat Body
 
 231.1
Adult Salivary Gland
 
 297.3
Adult Heart
 
 356.375
Adult VirginFemale Spermatheca
 
 348
Adult InseminatedFemale Spermatheca
 
 457.7
Adult Ovary
 (724.1)
Adult Testis
 
 147
Adult Male Accessory Gland
 
 167.4
Adult Carcass
 
 224.1
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 894.725
Larval Midgut
 
 275.2
Larval Hindgut
 
 329.9
Larval Malpighian Tubules
 
 336.8
Larval Fat Body
 
 335.8
Larval Salivary Gland
 
 419.1
Larval Trachea
 
 592.95
Larval Carcass
 
 337.575
Adult Head
 
 313.8
Adult Eye
 
 555.275
Adult Brain
 
 785
Adult Thoracic-Abdominal Ganglion
 
 607.4
Adult Crop
 
 281.6
Adult Midgut
 
 296.6
Adult Hindgut
 
 287.7
Adult Malpighian Tubules
 
 624.1
Adult Fat Body
 
 231.1
Adult Salivary Gland
 
 297.3
Adult Heart
 
 356.375
Adult VirginFemale Spermatheca
 
 348
Adult InseminatedFemale Spermatheca
 
 457.7
Adult Ovary
 
 724.1
Adult Testis
 
 147
Adult Male Accessory Gland
 
 167.4
Adult Carcass
 
 224.1
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 894.725
Larval Midgut
 
 275.2
Larval Hindgut
 
 329.9
Larval Malpighian Tubules
 
 336.8
Larval Fat Body
 
 335.8
Larval Salivary Gland
 
 419.1
Larval Trachea
 
 592.95
Larval Carcass
 
 337.575
Adult Head
 
 313.8
Adult Eye
 
 555.275
Adult Brain
 
 785
Adult Thoracic-Abdominal Ganglion
 
 607.4
Adult Crop
 
 281.6
Adult Midgut
 
 296.6
Adult Hindgut
 
 287.7
Adult Malpighian Tubules
 
 624.1
Adult Fat Body
 
 231.1
Adult Salivary Gland
 
 297.3
Adult Heart
 
 356.375
Adult VirginFemale Spermatheca
 
 348
Adult InseminatedFemale Spermatheca
 
 457.7
Adult Ovary
 
 724.1
Adult Testis
 
 147
Adult Male Accessory Gland
 
 167.4
Adult Carcass
 
 224.1
Expression Level Scale
 Very high 
log, scaled to maximum expression level
Tissue   Expression Level
Larval Central Nervous System
 
 894.725
Larval Midgut
 
 275.2
Larval Hindgut
 
 329.9
Larval Malpighian Tubules
 
 336.8
Larval Fat Body
 
 335.8
Larval Salivary Gland
 
 419.1
Larval Trachea
 
 592.95
Larval Carcass
 
 337.575
Adult Head
 
 313.8
Adult Eye
 
 555.275
Adult Brain
 
 785
Adult Thoracic-Abdominal Ganglion
 
 607.4
Adult Crop
 
 281.6
Adult Midgut
 
 296.6
Adult Hindgut
 
 287.7
Adult Malpighian Tubules
 
 624.1
Adult Fat Body
 
 231.1
Adult Salivary Gland
 
 297.3
Adult Heart
 
 356.375
Adult VirginFemale Spermatheca
 
 348
Adult InseminatedFemale Spermatheca
 
 457.7
Adult Ovary
 
 724.1
Adult Testis
 
 147
Adult Male Accessory Gland
 
 167.4
Adult Carcass
 
 224.1
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 (894.725)
Larval Midgut
 
 275.2
Larval Hindgut
 
 329.9
Larval Malpighian Tubules
 
 336.8
Larval Fat Body
 
 335.8
Larval Salivary Gland
 
 419.1
Larval Trachea
 592.95
Larval Carcass
 
 337.575
Adult Head
 
 313.8
Adult Eye
 555.275
Adult Brain
 785
Adult Thoracic-Abdominal Ganglion
 607.4
Adult Crop
 
 281.6
Adult Midgut
 
 296.6
Adult Hindgut
 
 287.7
Adult Malpighian Tubules
 624.1
Adult Fat Body
 
 231.1
Adult Salivary Gland
 
 297.3
Adult Heart
 
 356.375
Adult VirginFemale Spermatheca
 
 348
Adult InseminatedFemale Spermatheca
 
 457.7
Adult Ovary
 724.1
Adult Testis
 
 147
Adult Male Accessory Gland
 
 167.4
Adult Carcass
 
 224.1
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 894.725
Larval Midgut
 
 275.2
Larval Hindgut
 
 329.9
Larval Malpighian Tubules
 
 336.8
Larval Fat Body
 
 335.8
Larval Salivary Gland
 
 419.1
Larval Trachea
 
 592.95
Larval Carcass
 
 337.575
Adult Head
 
 313.8
Adult Eye
 
 555.275
Adult Brain
 
 785
Adult Thoracic-Abdominal Ganglion
 
 607.4
Adult Crop
 
 281.6
Adult Midgut
 
 296.6
Adult Hindgut
 
 287.7
Adult Malpighian Tubules
 
 624.1
Adult Fat Body
 
 231.1
Adult Salivary Gland
 
 297.3
Adult Heart
 
 356.375
Adult VirginFemale Spermatheca
 
 348
Adult InseminatedFemale Spermatheca
 
 457.7
Adult Ovary
 
 724.1
Adult Testis
 
 147
Adult Male Accessory Gland
 
 167.4
Adult Carcass
 
 224.1
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 894.725
Larval Midgut
 
 275.2
Larval Hindgut
 
 329.9
Larval Malpighian Tubules
 
 336.8
Larval Fat Body
 
 335.8
Larval Salivary Gland
 
 419.1
Larval Trachea
 
 592.95
Larval Carcass
 
 337.575
Adult Head
 
 313.8
Adult Eye
 
 555.275
Adult Brain
 
 785
Adult Thoracic-Abdominal Ganglion
 
 607.4
Adult Crop
 
 281.6
Adult Midgut
 
 296.6
Adult Hindgut
 
 287.7
Adult Malpighian Tubules
 
 624.1
Adult Fat Body
 
 231.1
Adult Salivary Gland
 
 297.3
Adult Heart
 
 356.375
Adult VirginFemale Spermatheca
 
 348
Adult InseminatedFemale Spermatheca
 
 457.7
Adult Ovary
 
 724.1
Adult Testis
 
 147
Adult Male Accessory Gland
 
 167.4
Adult Carcass
 
 224.1
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body
 
 
Adult Salivary Gland
 
 
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass
 
 

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 313.8
 
NA 
Eye
 
 555.275
 
NA 
Brain
 
 785
 
894.725 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 607.4
 
NA 
Crop
 
 281.6
 
275.2 
Midgut
 
 296.6
 
329.9 
Hindgut
 
 287.7
 
336.8 
Malpighian Tubules
 
 624.1
 
335.8 
Fat Body
 
 231.1
 
419.1 
Salivary Gland
 
 297.3
 
NA 
Heart
 
 356.375
 
592.95 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 348
 
NA 
InseminatedFemale Spermatheca
 
 457.7
 
NA 
Ovary
 
 724.1
 
NA 
Testis
 
 147
 
NA 
Male Accessory Gland
 
 167.4
 
337.575 
Carcass
 
 224.1

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 149
central nervous system, larvae L3
 
 192
central nervous system, pupae P8
 
 74
head, virgin 1-day female
 
 39
head, virgin 4-day female
 
 48
head, virgin 20-day female
 
 30
head, mated 1-day female
 
 39
head, mated 4-day female
 
 43
head, mated 20-day female
 
 31
head, mated 1-day male
 
 53
head, mated 4-day male
 
 62
head, mated 20-day male
 
 72
salivary gland, larvae L3 wandering
 
 13
salivary gland, white prepupae
 
 35
digestive system, larvae L3 wandering
 
 44
digestive system, 1-day adult
 
 27
digestive system, 4-day adult
 
 48
digestive system, 20-day adult
 
 42
fat body, larvae L3 wandering
 
 26
fat body, white prepupae
 
 43
fat body, pupae P8
 
 70
carcass, larvae L3 wandering
 
 128
carcass, 1-day adult
 
 22
carcass, 4-day adult
 
 36
carcass, 20-day adult
 
 27
ovary, virgin 4-day female
 
 89
ovary, mated 4-day female
 
 99
testis, mated 4-day male
 
 14
accessory gland, mated 4-day male
 
 18
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Moderate expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 (149)
central nervous system, larvae L3
 (192)
central nervous system, pupae P8
 (74)
head, virgin 1-day female
 (39)
head, virgin 4-day female
 (48)
head, virgin 20-day female
 (30)
head, mated 1-day female
 (39)
head, mated 4-day female
 (43)
head, mated 20-day female
 (31)
head, mated 1-day male
 (53)
head, mated 4-day male
 (62)
head, mated 20-day male
 (72)
salivary gland, larvae L3 wandering
 
 13
salivary gland, white prepupae
 (35)
digestive system, larvae L3 wandering
 (44)
digestive system, 1-day adult
 (27)
digestive system, 4-day adult
 (48)
digestive system, 20-day adult
 (42)
fat body, larvae L3 wandering
 26
fat body, white prepupae
 (43)
fat body, pupae P8
 (70)
carcass, larvae L3 wandering
 (128)
carcass, 1-day adult
 
 22
carcass, 4-day adult
 (36)
carcass, 20-day adult
 (27)
ovary, virgin 4-day female
 (89)
ovary, mated 4-day female
 (99)
testis, mated 4-day male
 
 14
accessory gland, mated 4-day male
 
 18
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 (149)
central nervous system, larvae L3
 (192)
central nervous system, pupae P8
 
 74
head, virgin 1-day female
 
 39
head, virgin 4-day female
 
 48
head, virgin 20-day female
 
 30
head, mated 1-day female
 
 39
head, mated 4-day female
 
 43
head, mated 20-day female
 
 31
head, mated 1-day male
 
 53
head, mated 4-day male
 
 62
head, mated 20-day male
 
 72
salivary gland, larvae L3 wandering
 
 13
salivary gland, white prepupae
 
 35
digestive system, larvae L3 wandering
 
 44
digestive system, 1-day adult
 
 27
digestive system, 4-day adult
 
 48
digestive system, 20-day adult
 
 42
fat body, larvae L3 wandering
 
 26
fat body, white prepupae
 
 43
fat body, pupae P8
 
 70
carcass, larvae L3 wandering
 (128)
carcass, 1-day adult
 
 22
carcass, 4-day adult
 
 36
carcass, 20-day adult
 
 27
ovary, virgin 4-day female
 
 89
ovary, mated 4-day female
 
 99
testis, mated 4-day male
 
 14
accessory gland, mated 4-day male
 
 18
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 149
central nervous system, larvae L3
 
 192
central nervous system, pupae P8
 
 74
head, virgin 1-day female
 
 39
head, virgin 4-day female
 
 48
head, virgin 20-day female
 
 30
head, mated 1-day female
 
 39
head, mated 4-day female
 
 43
head, mated 20-day female
 
 31
head, mated 1-day male
 
 53
head, mated 4-day male
 
 62
head, mated 20-day male
 
 72
salivary gland, larvae L3 wandering
 
 13
salivary gland, white prepupae
 
 35
digestive system, larvae L3 wandering
 
 44
digestive system, 1-day adult
 
 27
digestive system, 4-day adult
 
 48
digestive system, 20-day adult
 
 42
fat body, larvae L3 wandering
 
 26
fat body, white prepupae
 
 43
fat body, pupae P8
 
 70
carcass, larvae L3 wandering
 
 128
carcass, 1-day adult
 
 22
carcass, 4-day adult
 
 36
carcass, 20-day adult
 
 27
ovary, virgin 4-day female
 
 89
ovary, mated 4-day female
 
 99
testis, mated 4-day male
 
 14
accessory gland, mated 4-day male
 
 18
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 149
central nervous system, larvae L3
 
 192
central nervous system, pupae P8
 
 74
head, virgin 1-day female
 
 39
head, virgin 4-day female
 
 48
head, virgin 20-day female
 
 30
head, mated 1-day female
 
 39
head, mated 4-day female
 
 43
head, mated 20-day female
 
 31
head, mated 1-day male
 
 53
head, mated 4-day male
 
 62
head, mated 20-day male
 
 72
salivary gland, larvae L3 wandering
 
 13
salivary gland, white prepupae
 
 35
digestive system, larvae L3 wandering
 
 44
digestive system, 1-day adult
 
 27
digestive system, 4-day adult
 
 48
digestive system, 20-day adult
 
 42
fat body, larvae L3 wandering
 
 26
fat body, white prepupae
 
 43
fat body, pupae P8
 
 70
carcass, larvae L3 wandering
 
 128
carcass, 1-day adult
 
 22
carcass, 4-day adult
 
 36
carcass, 20-day adult
 
 27
ovary, virgin 4-day female
 
 89
ovary, mated 4-day female
 
 99
testis, mated 4-day male
 
 14
accessory gland, mated 4-day male
 
 18
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Moderate expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 (149)
central nervous system, larvae L3
 (192)
central nervous system, pupae P8
 (74)
head, virgin 1-day female
 (39)
head, virgin 4-day female
 (48)
head, virgin 20-day female
 30
head, mated 1-day female
 (39)
head, mated 4-day female
 (43)
head, mated 20-day female
 31
head, mated 1-day male
 (53)
head, mated 4-day male
 (62)
head, mated 20-day male
 (72)
salivary gland, larvae L3 wandering
 
 13
salivary gland, white prepupae
 (35)
digestive system, larvae L3 wandering
 (44)
digestive system, 1-day adult
 27
digestive system, 4-day adult
 (48)
digestive system, 20-day adult
 (42)
fat body, larvae L3 wandering
 26
fat body, white prepupae
 (43)
fat body, pupae P8
 (70)
carcass, larvae L3 wandering
 (128)
carcass, 1-day adult
 
 22
carcass, 4-day adult
 (36)
carcass, 20-day adult
 27
ovary, virgin 4-day female
 (89)
ovary, mated 4-day female
 (99)
testis, mated 4-day male
 
 14
accessory gland, mated 4-day male
 
 18
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 (149)
central nervous system, larvae L3
 (192)
central nervous system, pupae P8
 
 74
head, virgin 1-day female
 
 39
head, virgin 4-day female
 
 48
head, virgin 20-day female
 
 30
head, mated 1-day female
 
 39
head, mated 4-day female
 
 43
head, mated 20-day female
 
 31
head, mated 1-day male
 
 53
head, mated 4-day male
 
 62
head, mated 20-day male
 
 72
salivary gland, larvae L3 wandering
 
 13
salivary gland, white prepupae
 
 35
digestive system, larvae L3 wandering
 
 44
digestive system, 1-day adult
 
 27
digestive system, 4-day adult
 
 48
digestive system, 20-day adult
 
 42
fat body, larvae L3 wandering
 
 26
fat body, white prepupae
 
 43
fat body, pupae P8
 
 70
carcass, larvae L3 wandering
 128
carcass, 1-day adult
 
 22
carcass, 4-day adult
 
 36
carcass, 20-day adult
 
 27
ovary, virgin 4-day female
 
 89
ovary, mated 4-day female
 
 99
testis, mated 4-day male
 
 14
accessory gland, mated 4-day male
 
 18
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 149
central nervous system, larvae L3
 
 192
central nervous system, pupae P8
 
 74
head, virgin 1-day female
 
 39
head, virgin 4-day female
 
 48
head, virgin 20-day female
 
 30
head, mated 1-day female
 
 39
head, mated 4-day female
 
 43
head, mated 20-day female
 
 31
head, mated 1-day male
 
 53
head, mated 4-day male
 
 62
head, mated 20-day male
 
 72
salivary gland, larvae L3 wandering
 
 13
salivary gland, white prepupae
 
 35
digestive system, larvae L3 wandering
 
 44
digestive system, 1-day adult
 
 27
digestive system, 4-day adult
 
 48
digestive system, 20-day adult
 
 42
fat body, larvae L3 wandering
 
 26
fat body, white prepupae
 
 43
fat body, pupae P8
 
 70
carcass, larvae L3 wandering
 
 128
carcass, 1-day adult
 
 22
carcass, 4-day adult
 
 36
carcass, 20-day adult
 
 27
ovary, virgin 4-day female
 
 89
ovary, mated 4-day female
 
 99
testis, mated 4-day male
 
 14
accessory gland, mated 4-day male
 
 18
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 
central nervous system, larvae L3
 
 
central nervous system, pupae P8
 
 
head, virgin 1-day female
 
 
head, virgin 4-day female
 
 
head, virgin 20-day female
 
 
head, mated 1-day female
 
 
head, mated 4-day female
 
 
head, mated 20-day female
 
 
head, mated 1-day male
 
 
head, mated 4-day male
 
 
head, mated 20-day male
 
 
salivary gland, larvae L3 wandering
 
 
salivary gland, white prepupae
 
 
digestive system, larvae L3 wandering
 
 
digestive system, 1-day adult
 
 
digestive system, 4-day adult
 
 
digestive system, 20-day adult
 
 
fat body, larvae L3 wandering
 
 
fat body, white prepupae
 
 
fat body, pupae P8
 
 
carcass, larvae L3 wandering
 
 
carcass, 1-day adult
 
 
carcass, 4-day adult
 
 
carcass, 20-day adult
 
 
ovary, virgin 4-day female
 
 
ovary, mated 4-day female
 
 
testis, mated 4-day male
 
 
accessory gland, mated 4-day male
 
 

hide modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)


   Styles
   Scales

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed within 00-18 hour embryonic stages.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 158
embryo 02-04hr
 
 223
embryo 04-06hr
 
 206
embryo 06-08hr
 
 271
embryo 08-10hr
 
 220
embryo 10-12hr
 
 117
embryo 12-14hr
 
 89
embryo 14-16hr
 
 176
embryo 16-18hr
 
 84
embryo 18-20hr
 
 48
embryo 20-22hr
 
 84
embryo 22-24hr
 
 52
larva L1
 
 97
larva L2
 
 54
larva L3 12hr old
 
 53
larva L3 puffstage 1-2
 
 38
larva L3 puffstage 3-6
 
 66
larva L3 puffstage 7-9
 
 56
white prepupae new
 
 60
white prepupae 12hr
 
 63
white prepupae 24hr
 
 92
pupae 2d postWPP
 
 44
pupae 3d postWPP
 
 21
pupae 4d postWPP
 
 38
adult male 01day
 
 25
adult male 05day
 
 45
adult male 30day
 
 53
adult female 01day
 
 74
adult female 05day
 
 86
adult female 30day
 
 94
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (158)
embryo 02-04hr
 (223)
embryo 04-06hr
 (206)
embryo 06-08hr
 (271)
embryo 08-10hr
 (220)
embryo 10-12hr
 (117)
embryo 12-14hr
 (89)
embryo 14-16hr
 (176)
embryo 16-18hr
 (84)
embryo 18-20hr
 (48)
embryo 20-22hr
 (84)
embryo 22-24hr
 (52)
larva L1
 (97)
larva L2
 (54)
larva L3 12hr old
 (53)
larva L3 puffstage 1-2
 (38)
larva L3 puffstage 3-6
 (66)
larva L3 puffstage 7-9
 (56)
white prepupae new
 (60)
white prepupae 12hr
 (63)
white prepupae 24hr
 (92)
pupae 2d postWPP
 (44)
pupae 3d postWPP
 
 21
pupae 4d postWPP
 (38)
adult male 01day
 
 25
adult male 05day
 (45)
adult male 30day
 (53)
adult female 01day
 (74)
adult female 05day
 (86)
adult female 30day
 (94)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 (158)
embryo 02-04hr
 (223)
embryo 04-06hr
 (206)
embryo 06-08hr
 (271)
embryo 08-10hr
 (220)
embryo 10-12hr
 (117)
embryo 12-14hr
 
 89
embryo 14-16hr
 (176)
embryo 16-18hr
 
 84
embryo 18-20hr
 
 48
embryo 20-22hr
 
 84
embryo 22-24hr
 
 52
larva L1
 
 97
larva L2
 
 54
larva L3 12hr old
 
 53
larva L3 puffstage 1-2
 
 38
larva L3 puffstage 3-6
 
 66
larva L3 puffstage 7-9
 
 56
white prepupae new
 
 60
white prepupae 12hr
 
 63
white prepupae 24hr
 
 92
pupae 2d postWPP
 
 44
pupae 3d postWPP
 
 21
pupae 4d postWPP
 
 38
adult male 01day
 
 25
adult male 05day
 
 45
adult male 30day
 
 53
adult female 01day
 
 74
adult female 05day
 
 86
adult female 30day
 
 94
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 158
embryo 02-04hr
 
 223
embryo 04-06hr
 
 206
embryo 06-08hr
 
 271
embryo 08-10hr
 
 220
embryo 10-12hr
 
 117
embryo 12-14hr
 
 89
embryo 14-16hr
 
 176
embryo 16-18hr
 
 84
embryo 18-20hr
 
 48
embryo 20-22hr
 
 84
embryo 22-24hr
 
 52
larva L1
 
 97
larva L2
 
 54
larva L3 12hr old
 
 53
larva L3 puffstage 1-2
 
 38
larva L3 puffstage 3-6
 
 66
larva L3 puffstage 7-9
 
 56
white prepupae new
 
 60
white prepupae 12hr
 
 63
white prepupae 24hr
 
 92
pupae 2d postWPP
 
 44
pupae 3d postWPP
 
 21
pupae 4d postWPP
 
 38
adult male 01day
 
 25
adult male 05day
 
 45
adult male 30day
 
 53
adult female 01day
 
 74
adult female 05day
 
 86
adult female 30day
 
 94
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 158
embryo 02-04hr
 
 223
embryo 04-06hr
 
 206
embryo 06-08hr
 
 271
embryo 08-10hr
 
 220
embryo 10-12hr
 
 117
embryo 12-14hr
 
 89
embryo 14-16hr
 
 176
embryo 16-18hr
 
 84
embryo 18-20hr
 
 48
embryo 20-22hr
 
 84
embryo 22-24hr
 
 52
larva L1
 
 97
larva L2
 
 54
larva L3 12hr old
 
 53
larva L3 puffstage 1-2
 
 38
larva L3 puffstage 3-6
 
 66
larva L3 puffstage 7-9
 
 56
white prepupae new
 
 60
white prepupae 12hr
 
 63
white prepupae 24hr
 
 92
pupae 2d postWPP
 
 44
pupae 3d postWPP
 
 21
pupae 4d postWPP
 
 38
adult male 01day
 
 25
adult male 05day
 
 45
adult male 30day
 
 53
adult female 01day
 
 74
adult female 05day
 
 86
adult female 30day
 
 94
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (158)
embryo 02-04hr
 (223)
embryo 04-06hr
 (206)
embryo 06-08hr
 (271)
embryo 08-10hr
 (220)
embryo 10-12hr
 (117)
embryo 12-14hr
 (89)
embryo 14-16hr
 (176)
embryo 16-18hr
 (84)
embryo 18-20hr
 (48)
embryo 20-22hr
 (84)
embryo 22-24hr
 (52)
larva L1
 (97)
larva L2
 (54)
larva L3 12hr old
 (53)
larva L3 puffstage 1-2
 (38)
larva L3 puffstage 3-6
 (66)
larva L3 puffstage 7-9
 (56)
white prepupae new
 (60)
white prepupae 12hr
 (63)
white prepupae 24hr
 (92)
pupae 2d postWPP
 (44)
pupae 3d postWPP
 
 21
pupae 4d postWPP
 (38)
adult male 01day
 
 25
adult male 05day
 (45)
adult male 30day
 (53)
adult female 01day
 (74)
adult female 05day
 (86)
adult female 30day
 (94)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 (158)
embryo 02-04hr
 (223)
embryo 04-06hr
 (206)
embryo 06-08hr
 (271)
embryo 08-10hr
 (220)
embryo 10-12hr
 117
embryo 12-14hr
 
 89
embryo 14-16hr
 (176)
embryo 16-18hr
 
 84
embryo 18-20hr
 
 48
embryo 20-22hr
 
 84
embryo 22-24hr
 
 52
larva L1
 
 97
larva L2
 
 54
larva L3 12hr old
 
 53
larva L3 puffstage 1-2
 
 38
larva L3 puffstage 3-6
 
 66
larva L3 puffstage 7-9
 
 56
white prepupae new
 
 60
white prepupae 12hr
 
 63
white prepupae 24hr
 
 92
pupae 2d postWPP
 
 44
pupae 3d postWPP
 
 21
pupae 4d postWPP
 
 38
adult male 01day
 
 25
adult male 05day
 
 45
adult male 30day
 
 53
adult female 01day
 
 74
adult female 05day
 
 86
adult female 30day
 
 94
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 158
embryo 02-04hr
 
 223
embryo 04-06hr
 
 206
embryo 06-08hr
 
 271
embryo 08-10hr
 
 220
embryo 10-12hr
 
 117
embryo 12-14hr
 
 89
embryo 14-16hr
 
 176
embryo 16-18hr
 
 84
embryo 18-20hr
 
 48
embryo 20-22hr
 
 84
embryo 22-24hr
 
 52
larva L1
 
 97
larva L2
 
 54
larva L3 12hr old
 
 53
larva L3 puffstage 1-2
 
 38
larva L3 puffstage 3-6
 
 66
larva L3 puffstage 7-9
 
 56
white prepupae new
 
 60
white prepupae 12hr
 
 63
white prepupae 24hr
 
 92
pupae 2d postWPP
 
 44
pupae 3d postWPP
 
 21
pupae 4d postWPP
 
 38
adult male 01day
 
 25
adult male 05day
 
 45
adult male 30day
 
 53
adult female 01day
 
 74
adult female 05day
 
 86
adult female 30day
 
 94
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

modENCODE Temporal Expression Data (Graveley et al., 2011)
hide modENCODE Cell Lines RNA-Seq

modENCODE Cell Line Expression Data

(modENCODE_mRNA-Seq_cell.A)

(modENCODE_mRNA-Seq_cell.B)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Cell Line   Expression Level
Schneider line 2 S2R+
 
 183
Schneider line 2 Sg4
 
 169
embryonic 1182-4H
 
 191
embryonic GM2
 
 97
embryonic Kc167
 
 63
embryonic S1
 
 179
embryonic S3
 
 210
leg disc CME L1
 
 168
wing disc CME-W2
 
 159
wing disc ML-DmD8
 
 190
wing disc ML-DmD9
 
 217
wing disc ML-DmD16-c3
 
 200
wing disc ML-DmD21
 
 301
wing disc ML-DmD32
 
 206
haltere disc ML-DmD17-c3
 
 128
eye-antennal disc ML-DmD11
 
 176
antennal disc ML-DmD20-c5
 
 169
mixed discs ML-DmD4-c1
 
 190
CNS ML-DmBG1-c1
 
 230
CNS ML-DmBG2-c2
 
 134
tumorous blood cells mbn2
 
 181
ovary fGS/OSS
 
 150
ovary OSC
 
 118
ovary OSS
 
 55
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Moderate expression
Cell Line   Expression Level
Schneider line 2 S2R+
 (183)
Schneider line 2 Sg4
 (169)
embryonic 1182-4H
 (191)
embryonic GM2
 (97)
embryonic Kc167
 (63)
embryonic S1
 (179)
embryonic S3
 (210)
leg disc CME L1
 (168)
wing disc CME-W2
 (159)
wing disc ML-DmD8
 (190)
wing disc ML-DmD9
 (217)
wing disc ML-DmD16-c3
 (200)
wing disc ML-DmD21
 (301)
wing disc ML-DmD32
 (206)
haltere disc ML-DmD17-c3
 (128)
eye-antennal disc ML-DmD11
 (176)
antennal disc ML-DmD20-c5
 (169)
mixed discs ML-DmD4-c1
 (190)
CNS ML-DmBG1-c1
 (230)
CNS ML-DmBG2-c2
 (134)
tumorous blood cells mbn2
 (181)
ovary fGS/OSS
 (150)
ovary OSC
 (118)
ovary OSS
 (55)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Cell Line   Expression Level
Schneider line 2 S2R+
 (183)
Schneider line 2 Sg4
 (169)
embryonic 1182-4H
 (191)
embryonic GM2
 
 97
embryonic Kc167
 
 63
embryonic S1
 (179)
embryonic S3
 (210)
leg disc CME L1
 (168)
wing disc CME-W2
 (159)
wing disc ML-DmD8
 (190)
wing disc ML-DmD9
 (217)
wing disc ML-DmD16-c3
 (200)
wing disc ML-DmD21
 (301)
wing disc ML-DmD32
 (206)
haltere disc ML-DmD17-c3
 (128)
eye-antennal disc ML-DmD11
 (176)
antennal disc ML-DmD20-c5
 (169)
mixed discs ML-DmD4-c1
 (190)
CNS ML-DmBG1-c1
 (230)
CNS ML-DmBG2-c2
 (134)
tumorous blood cells mbn2
 (181)
ovary fGS/OSS
 (150)
ovary OSC
 (118)
ovary OSS
 
 55
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 183
Schneider line 2 Sg4
 
 169
embryonic 1182-4H
 
 191
embryonic GM2
 
 97
embryonic Kc167
 
 63
embryonic S1
 
 179
embryonic S3
 
 210
leg disc CME L1
 
 168
wing disc CME-W2
 
 159
wing disc ML-DmD8
 
 190
wing disc ML-DmD9
 
 217
wing disc ML-DmD16-c3
 
 200
wing disc ML-DmD21
 
 301
wing disc ML-DmD32
 
 206
haltere disc ML-DmD17-c3
 
 128
eye-antennal disc ML-DmD11
 
 176
antennal disc ML-DmD20-c5
 
 169
mixed discs ML-DmD4-c1
 
 190
CNS ML-DmBG1-c1
 
 230
CNS ML-DmBG2-c2
 
 134
tumorous blood cells mbn2
 
 181
ovary fGS/OSS
 
 150
ovary OSC
 
 118
ovary OSS
 
 55
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Cell Line   Expression Level
Schneider line 2 S2R+
 
 183
Schneider line 2 Sg4
 
 169
embryonic 1182-4H
 
 191
embryonic GM2
 
 97
embryonic Kc167
 
 63
embryonic S1
 
 179
embryonic S3
 
 210
leg disc CME L1
 
 168
wing disc CME-W2
 
 159
wing disc ML-DmD8
 
 190
wing disc ML-DmD9
 
 217
wing disc ML-DmD16-c3
 
 200
wing disc ML-DmD21
 
 301
wing disc ML-DmD32
 
 206
haltere disc ML-DmD17-c3
 
 128
eye-antennal disc ML-DmD11
 
 176
antennal disc ML-DmD20-c5
 
 169
mixed discs ML-DmD4-c1
 
 190
CNS ML-DmBG1-c1
 
 230
CNS ML-DmBG2-c2
 
 134
tumorous blood cells mbn2
 
 181
ovary fGS/OSS
 
 150
ovary OSC
 
 118
ovary OSS
 
 55
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Moderate expression
Cell Line   Expression Level
Schneider line 2 S2R+
 (183)
Schneider line 2 Sg4
 (169)
embryonic 1182-4H
 (191)
embryonic GM2
 (97)
embryonic Kc167
 (63)
embryonic S1
 (179)
embryonic S3
 (210)
leg disc CME L1
 (168)
wing disc CME-W2
 (159)
wing disc ML-DmD8
 (190)
wing disc ML-DmD9
 (217)
wing disc ML-DmD16-c3
 (200)
wing disc ML-DmD21
 (301)
wing disc ML-DmD32
 (206)
haltere disc ML-DmD17-c3
 (128)
eye-antennal disc ML-DmD11
 (176)
antennal disc ML-DmD20-c5
 (169)
mixed discs ML-DmD4-c1
 (190)
CNS ML-DmBG1-c1
 (230)
CNS ML-DmBG2-c2
 (134)
tumorous blood cells mbn2
 (181)
ovary fGS/OSS
 (150)
ovary OSC
 (118)
ovary OSS
 (55)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Cell Line   Expression Level
Schneider line 2 S2R+
 (183)
Schneider line 2 Sg4
 (169)
embryonic 1182-4H
 (191)
embryonic GM2
 
 97
embryonic Kc167
 
 63
embryonic S1
 (179)
embryonic S3
 (210)
leg disc CME L1
 (168)
wing disc CME-W2
 (159)
wing disc ML-DmD8
 (190)
wing disc ML-DmD9
 (217)
wing disc ML-DmD16-c3
 (200)
wing disc ML-DmD21
 (301)
wing disc ML-DmD32
 (206)
haltere disc ML-DmD17-c3
 128
eye-antennal disc ML-DmD11
 (176)
antennal disc ML-DmD20-c5
 (169)
mixed discs ML-DmD4-c1
 (190)
CNS ML-DmBG1-c1
 (230)
CNS ML-DmBG2-c2
 134
tumorous blood cells mbn2
 (181)
ovary fGS/OSS
 (150)
ovary OSC
 118
ovary OSS
 
 55
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 183
Schneider line 2 Sg4
 
 169
embryonic 1182-4H
 
 191
embryonic GM2
 
 97
embryonic Kc167
 
 63
embryonic S1
 
 179
embryonic S3
 
 210
leg disc CME L1
 
 168
wing disc CME-W2
 
 159
wing disc ML-DmD8
 
 190
wing disc ML-DmD9
 
 217
wing disc ML-DmD16-c3
 
 200
wing disc ML-DmD21
 
 301
wing disc ML-DmD32
 
 206
haltere disc ML-DmD17-c3
 
 128
eye-antennal disc ML-DmD11
 
 176
antennal disc ML-DmD20-c5
 
 169
mixed discs ML-DmD4-c1
 
 190
CNS ML-DmBG1-c1
 
 230
CNS ML-DmBG2-c2
 
 134
tumorous blood cells mbn2
 
 181
ovary fGS/OSS
 
 150
ovary OSC
 
 118
ovary OSS
 
 55
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Cell Line   Expression Level
Schneider line 2 S2R+
 
 
Schneider line 2 Sg4
 
 
embryonic 1182-4H
 
 
embryonic GM2
 
 
embryonic Kc167
 
 
embryonic S1
 
 
embryonic S3
 
 
leg disc CME L1
 
 
wing disc CME-W2
 
 
wing disc ML-DmD8
 
 
wing disc ML-DmD9
 
 
wing disc ML-DmD16-c3
 
 
wing disc ML-DmD21
 
 
wing disc ML-DmD32
 
 
haltere disc ML-DmD17-c3
 
 
eye-antennal disc ML-DmD11
 
 
antennal disc ML-DmD20-c5
 
 
mixed discs ML-DmD4-c1
 
 
CNS ML-DmBG1-c1
 
 
CNS ML-DmBG2-c2
 
 
tumorous blood cells mbn2
 
 
ovary fGS/OSS
 
 
ovary OSC
 
 
ovary OSS
 
 

hide modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment   Expression Level
extended cold, 4-day adult
 
 83
cold shock, 4-day adult
 
 67
heat shock, 4-day adult
 
 75
Cadmium 50 mM 6 hrs, larvae L3
 
 47
Cadmium 50 mM 12 hrs, larvae L3
 
 40
Cadmium 50 mM 48 hrs, 4-day adult
 
 62
Cadmium 100 mM 48 hrs, 4-day adult
 
 89
Copper 0.5 mM 12 hrs, larvae L3
 
 90
Copper 15 mM 48 hrs, 4-day adult
 
 33
Zinc 5 mM 12 hrs, larvae L3
 
 61
Zinc 4.5 mM 48 hrs, 4-day adult
 
 43
Ethanol 2.5% 3 hrs, larvae L3
 
 95
Ethanol 5% 3 hrs, larvae L3
 
 32
Ethanol 10% 3 hrs, larvae L3
 
 43
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 24
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 87
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 66
Paraquat 5 mM 48 hrs, 4-day adult
 
 83
Paraquat 10 mM 48 hrs, 4-day adult
 
 82
Rotenone 2 μg 12 hrs, larvae L3
 
 36
Rotenone 8 μg 12 hrs, larvae L3
 
 46
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Moderate expression
Treatment   Expression Level
extended cold, 4-day adult
 (83)
cold shock, 4-day adult
 (67)
heat shock, 4-day adult
 (75)
Cadmium 50 mM 6 hrs, larvae L3
 (47)
Cadmium 50 mM 12 hrs, larvae L3
 (40)
Cadmium 50 mM 48 hrs, 4-day adult
 (62)
Cadmium 100 mM 48 hrs, 4-day adult
 (89)
Copper 0.5 mM 12 hrs, larvae L3
 (90)
Copper 15 mM 48 hrs, 4-day adult
 (33)
Zinc 5 mM 12 hrs, larvae L3
 (61)
Zinc 4.5 mM 48 hrs, 4-day adult
 (43)
Ethanol 2.5% 3 hrs, larvae L3
 (95)
Ethanol 5% 3 hrs, larvae L3
 (32)
Ethanol 10% 3 hrs, larvae L3
 (43)
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 24
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 (87)
Caffeine 25 mg/ml 48 hrs, 4-day adult
 (66)
Paraquat 5 mM 48 hrs, 4-day adult
 (83)
Paraquat 10 mM 48 hrs, 4-day adult
 (82)
Rotenone 2 μg 12 hrs, larvae L3
 (36)
Rotenone 8 μg 12 hrs, larvae L3
 (46)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Treatment   Expression Level
extended cold, 4-day adult
 
 83
cold shock, 4-day adult
 
 67
heat shock, 4-day adult
 
 75
Cadmium 50 mM 6 hrs, larvae L3
 
 47
Cadmium 50 mM 12 hrs, larvae L3
 
 40
Cadmium 50 mM 48 hrs, 4-day adult
 
 62
Cadmium 100 mM 48 hrs, 4-day adult
 
 89
Copper 0.5 mM 12 hrs, larvae L3
 
 90
Copper 15 mM 48 hrs, 4-day adult
 
 33
Zinc 5 mM 12 hrs, larvae L3
 
 61
Zinc 4.5 mM 48 hrs, 4-day adult
 
 43
Ethanol 2.5% 3 hrs, larvae L3
 
 95
Ethanol 5% 3 hrs, larvae L3
 
 32
Ethanol 10% 3 hrs, larvae L3
 
 43
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 24
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 87
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 66
Paraquat 5 mM 48 hrs, 4-day adult
 
 83
Paraquat 10 mM 48 hrs, 4-day adult
 
 82
Rotenone 2 μg 12 hrs, larvae L3
 
 36
Rotenone 8 μg 12 hrs, larvae L3
 
 46
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Treatment   Expression Level
extended cold, 4-day adult
 
 83
cold shock, 4-day adult
 
 67
heat shock, 4-day adult
 
 75
Cadmium 50 mM 6 hrs, larvae L3
 
 47
Cadmium 50 mM 12 hrs, larvae L3
 
 40
Cadmium 50 mM 48 hrs, 4-day adult
 
 62
Cadmium 100 mM 48 hrs, 4-day adult
 
 89
Copper 0.5 mM 12 hrs, larvae L3
 
 90
Copper 15 mM 48 hrs, 4-day adult
 
 33
Zinc 5 mM 12 hrs, larvae L3
 
 61
Zinc 4.5 mM 48 hrs, 4-day adult
 
 43
Ethanol 2.5% 3 hrs, larvae L3
 
 95
Ethanol 5% 3 hrs, larvae L3
 
 32
Ethanol 10% 3 hrs, larvae L3
 
 43
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 24
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 87
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 66
Paraquat 5 mM 48 hrs, 4-day adult
 
 83
Paraquat 10 mM 48 hrs, 4-day adult
 
 82
Rotenone 2 μg 12 hrs, larvae L3
 
 36
Rotenone 8 μg 12 hrs, larvae L3
 
 46
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Treatment   Expression Level
extended cold, 4-day adult
 
 83
cold shock, 4-day adult
 
 67
heat shock, 4-day adult
 
 75
Cadmium 50 mM 6 hrs, larvae L3
 
 47
Cadmium 50 mM 12 hrs, larvae L3
 
 40
Cadmium 50 mM 48 hrs, 4-day adult
 
 62
Cadmium 100 mM 48 hrs, 4-day adult
 
 89
Copper 0.5 mM 12 hrs, larvae L3
 
 90
Copper 15 mM 48 hrs, 4-day adult
 
 33
Zinc 5 mM 12 hrs, larvae L3
 
 61
Zinc 4.5 mM 48 hrs, 4-day adult
 
 43
Ethanol 2.5% 3 hrs, larvae L3
 
 95
Ethanol 5% 3 hrs, larvae L3
 
 32
Ethanol 10% 3 hrs, larvae L3
 
 43
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 24
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 87
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 66
Paraquat 5 mM 48 hrs, 4-day adult
 
 83
Paraquat 10 mM 48 hrs, 4-day adult
 
 82
Rotenone 2 μg 12 hrs, larvae L3
 
 36
Rotenone 8 μg 12 hrs, larvae L3
 
 46
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Moderate expression
Treatment   Expression Level
extended cold, 4-day adult
 (83)
cold shock, 4-day adult
 (67)
heat shock, 4-day adult
 (75)
Cadmium 50 mM 6 hrs, larvae L3
 (47)
Cadmium 50 mM 12 hrs, larvae L3
 (40)
Cadmium 50 mM 48 hrs, 4-day adult
 (62)
Cadmium 100 mM 48 hrs, 4-day adult
 (89)
Copper 0.5 mM 12 hrs, larvae L3
 (90)
Copper 15 mM 48 hrs, 4-day adult
 (33)
Zinc 5 mM 12 hrs, larvae L3
 (61)
Zinc 4.5 mM 48 hrs, 4-day adult
 (43)
Ethanol 2.5% 3 hrs, larvae L3
 (95)
Ethanol 5% 3 hrs, larvae L3
 32
Ethanol 10% 3 hrs, larvae L3
 (43)
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 24
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 (87)
Caffeine 25 mg/ml 48 hrs, 4-day adult
 (66)
Paraquat 5 mM 48 hrs, 4-day adult
 (83)
Paraquat 10 mM 48 hrs, 4-day adult
 (82)
Rotenone 2 μg 12 hrs, larvae L3
 (36)
Rotenone 8 μg 12 hrs, larvae L3
 (46)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Treatment   Expression Level
extended cold, 4-day adult
 
 83
cold shock, 4-day adult
 
 67
heat shock, 4-day adult
 
 75
Cadmium 50 mM 6 hrs, larvae L3
 
 47
Cadmium 50 mM 12 hrs, larvae L3
 
 40
Cadmium 50 mM 48 hrs, 4-day adult
 
 62
Cadmium 100 mM 48 hrs, 4-day adult
 
 89
Copper 0.5 mM 12 hrs, larvae L3
 
 90
Copper 15 mM 48 hrs, 4-day adult
 
 33
Zinc 5 mM 12 hrs, larvae L3
 
 61
Zinc 4.5 mM 48 hrs, 4-day adult
 
 43
Ethanol 2.5% 3 hrs, larvae L3
 
 95
Ethanol 5% 3 hrs, larvae L3
 
 32
Ethanol 10% 3 hrs, larvae L3
 
 43
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 24
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 87
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 66
Paraquat 5 mM 48 hrs, 4-day adult
 
 83
Paraquat 10 mM 48 hrs, 4-day adult
 
 82
Rotenone 2 μg 12 hrs, larvae L3
 
 36
Rotenone 8 μg 12 hrs, larvae L3
 
 46
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Treatment   Expression Level
extended cold, 4-day adult
 
 83
cold shock, 4-day adult
 
 67
heat shock, 4-day adult
 
 75
Cadmium 50 mM 6 hrs, larvae L3
 
 47
Cadmium 50 mM 12 hrs, larvae L3
 
 40
Cadmium 50 mM 48 hrs, 4-day adult
 
 62
Cadmium 100 mM 48 hrs, 4-day adult
 
 89
Copper 0.5 mM 12 hrs, larvae L3
 
 90
Copper 15 mM 48 hrs, 4-day adult
 
 33
Zinc 5 mM 12 hrs, larvae L3
 
 61
Zinc 4.5 mM 48 hrs, 4-day adult
 
 43
Ethanol 2.5% 3 hrs, larvae L3
 
 95
Ethanol 5% 3 hrs, larvae L3
 
 32
Ethanol 10% 3 hrs, larvae L3
 
 43
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 24
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 87
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 66
Paraquat 5 mM 48 hrs, 4-day adult
 
 83
Paraquat 10 mM 48 hrs, 4-day adult
 
 82
Rotenone 2 μg 12 hrs, larvae L3
 
 36
Rotenone 8 μg 12 hrs, larvae L3
 
 46
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Treatment   Expression Level
extended cold, 4-day adult
 
 
cold shock, 4-day adult
 
 
heat shock, 4-day adult
 
 
Cadmium 50 mM 6 hrs, larvae L3
 
 
Cadmium 50 mM 12 hrs, larvae L3
 
 
Cadmium 50 mM 48 hrs, 4-day adult
 
 
Cadmium 100 mM 48 hrs, 4-day adult
 
 
Copper 0.5 mM 12 hrs, larvae L3
 
 
Copper 15 mM 48 hrs, 4-day adult
 
 
Zinc 5 mM 12 hrs, larvae L3
 
 
Zinc 4.5 mM 48 hrs, 4-day adult
 
 
Ethanol 2.5% 3 hrs, larvae L3
 
 
Ethanol 5% 3 hrs, larvae L3
 
 
Ethanol 10% 3 hrs, larvae L3
 
 
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 
Paraquat 5 mM 48 hrs, 4-day adult
 
 
Paraquat 10 mM 48 hrs, 4-day adult
 
 
Rotenone 2 μg 12 hrs, larvae L3
 
 
Rotenone 8 μg 12 hrs, larvae L3
 
 

hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
hide Classical Alleles ( 3 )
For All Classical Alleles Show

Allele of cazClassMutagenStocksKnown lesion
cazEP15641 Yes
caz3830 Yes
cazrv10 Yes
hide Alleles Carried on Transgenic Constructs ( 11 )
For All Alleles Carried on Transgenic Constructs Show

Allele of cazClassMutagenStocksKnown lesion
cazHMS001561 Yes
cazHMS007901 Yes
cazKK1074861 Yes
cazdsRNA.1-167.Scer\UAS0 Yes
cazdsRNA.180-346.Scer\UAS0 Yes
cazGD41730 Yes
cazP398L.10x.Scer\UAS.T:Zzzz\FLAG0 Yes
cazR395G.10x.Scer\UAS.T:Zzzz\FLAG0 Yes
cazScer\UAS.T:Ivir\HA10 Yes
cazScer\UAS.x10.T:Zzzz\FLAG0 Yes
cazT:Zzzz\FLAG0 Yes
hide Aneuploid Aberrations
Disrupted in
Partially disrupted in
Not disrupted in
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
characterization construct
Insertions
Type of insertions
Name
Expression data
insertion of mobile activating element
hide Gene Ontology: Function, Process & Cellular Component ( 15 unique terms )
hide Terms Based on Experimental Evidence ( 8 terms )
Molecular Function ( 0 terms)
Biological Process
CV term
References
inferred from mutant phenotype
inferred from mutant phenotype
Cellular Component
CV term
References
inferred from direct assay
inferred from direct assay
inferred from direct assay
hide Terms Based on Predictions or Assertions ( 8 terms )
Molecular Function
CV term
References
inferred from sequence or structural similarity
inferred from electronic annotation with InterPro:IPR001876
Biological Process
CV term
References
Cellular Component
CV term
References
non-traceable author statement
inferred from sequence or structural similarity with human TAF12
hide Sequence Ontology: Class of Gene
hide Interactions & Pathways
hide Summary of Physical Interactions
protein-protein
Interacting group
Assay
References
anti tag coimmunoprecipitation, anti tag western blot
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
caz allele
Gene
References
hide External Data
Linkouts
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
hide OrthoDB Orthologs (56) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
Drosophila inclusive ortholog search
Dipteran inclusive ortholog search
Insect inclusive ortholog search
Arthropod inclusive ortholog search
Metazoa inclusive ortholog search
hideOrthologs in Drosophila Species (EOG6W9JQD)
Organism
Common Name
Gene
AAA Syntenic Ortholog
Multiple Dmel Genes in this Orthologous Group
Drosophila melanogaster
fruit fly 
 
 
Drosophila simulans
 
Y
 
Drosophila sechellia
 
Y
 
Drosophila erecta
 
Y
 
Drosophila ananassae
 
Y
 
Drosophila pseudoobscura pseudoobscura
 
Y
 
Drosophila persimilis
 
Y
 
Drosophila willistoni
 
Y
 
Drosophila virilis
 
Y
 
Drosophila mojavensis
 
Y
 
Drosophila grimshawi
 
Y
 
hideOrthologs in non-Drosophila Dipterans (EOG670TSK)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Aedes aegypti
Yellow fever mosquito 
 
Aedes aegypti
Yellow fever mosquito 
 
Anopheles gambiae
Malaria mosquito 
 
Culex quinquefasciatus
Southern house mosquito 
 
hideOrthologs in non-Dipteran Insects (EOG65MM2S)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Apis mellifera
Western honey bee 
Amel\GB44991
 
Nasonia vitripennis
Parasitic wasp 
Nvit\Nasvi2EG012235
 
Acromyrmex echinatior
Panamanian leafcutter ant 
Aech\AECH27178
 
Atta cephalotes
Leafcutter ant 
Acep\ACEP20301
 
Camponotus floridanus
Florida carpenter ant 
Cflo\CFLO21206
 
Harpegnathos saltator
Jerdons jumping ant 
Hsal\HSAL18228
 
Linepithema humile
Argentine ant 
Lhum\LH15898
 
Pogonomyrmex barbatus
Red harvester ant 
Pbar\PB18945
 
Solenopsis invicta
Red fire ant 
Sinv\SINV14664
 
Acyrthosiphon pisum
Pea aphid 
 
Bombyx mori
Silkmoth 
 
Pediculus humanus
Human body louse 
 
Tribolium castaneum
Red flour beetle 
 
Tribolium castaneum
Red flour beetle 
 
hideOrthologs in non-Insect Arthropods (EOG6DZ0BK)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Daphnia pulex
Water flea 
 
Ixodes scapularis
Deer tick 
 
hideOrthologs in non-Arthropod Metazoa (EOG6ZKXH4)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Caenorhabditis elegans
Nematode 
 
Strongylocentrotus purpuratus
Purple sea urchin 
 
Strongylocentrotus purpuratus
Purple sea urchin 
 
Danio rerio
Zebrafish 
 
Danio rerio
Zebrafish 
 
Danio rerio
Zebrafish 
 
Danio rerio
Zebrafish 
 
Xenopus tropicalis
Western clawed frog 
 
Xenopus tropicalis
Western clawed frog 
 
Xenopus tropicalis
Western clawed frog 
 
Gallus gallus
Domestic chicken 
 
Gallus gallus
Domestic chicken 
 
Mus musculus
House mouse 
 
Mus musculus
House mouse 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Homo sapiens
Human 
 
Homo sapiens
Human 
 
Homo sapiens
Human 
 
hide Human Orthologs (3)
Gene
OMIM
HGNC
 
 
hideAAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism
Gene
Drosophila simulans
Drosophila sechellia
Drosophila erecta
Drosophila yakuba
Drosophila ananassae
Drosophila pseudoobscura pseudoobscura
Drosophila persimilis
Drosophila willistoni
Drosophila virilis
Drosophila mojavensis
Drosophila grimshawi
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Bloomington
VDRC
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Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
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Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
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Source for database identity of
Source for database merge of
Source for merge of: caz BcDNA:GM09207
Additional comments
Source for merge of caz BcDNA:GM09207 was a shared cDNA (date:030728).
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caz has been cloned and sequenced, and its expression pattern has been analysed.
caz gene product contains a glycine rich C-terminal domain, but only one RNA recognition motif (RRM) located in the central portion. Intron and exon borders of full length cDNA and genomic clones have been determined and the predicted protein has 403 amino acids and is 48.4kD. UV crosslinking experiments demonstrate general RNA binding activity for the full length protein and the RRM domain.
Isolated from a pupal cDNA library, using a fragment of the fs(1)h coding region containing "pen" repetitive sequences (GGN, where N is any nucleotide) as the probe.
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Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
Linkouts
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
hide Synonyms & Secondary IDs ( 18 )
Reported As
Symbol Synonym
anon-Pen19
 
BcDNA:GM09207
 
pen19
 
Pen19
 
Sarfh
 
Name Synonym
Sarcoma-associated RNA-binding fly homolog
Secondary FlyBase IDs
  • FBgn0003059
  • FBgn0011830
  • FBgn0062479
hide References ( 45 )
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hide Recent research papers ( 8 )
Baradaran-Heravi et al., 2012, Hum. Mol. Genet. 21(11): 2572--2587
Penetrance of biallelic SMARCAL1 mutations is associated with environmental and genetic disturbances of gene expression. [FBrf0218299]
Couthouis et al., 2012, Hum. Mol. Genet. 21(13): 2899--2911
Evaluating the role of the FUS/TLS-related gene EWSR1 in amyotrophic lateral sclerosis. [FBrf0218546]
Sasayama et al., 2012, PLoS ONE 7(6): e39483
Knockdown of the Drosophila Fused in Sarcoma (FUS) Homologue Causes Deficient Locomotive Behavior and Shortening of Motoneuron Terminal Branches. [FBrf0218682]
Wang et al., 2012, PLoS ONE 7(7): e42102
A modular toolset for recombination transgenesis and neurogenetic analysis of Drosophila. [FBrf0219026]
Xia et al., 2012, Mol. Neurodegener. 7: 10
Motor neuron apoptosis and neuromuscular junction perturbation are prominent features in a Drosophila model of Fus-mediated ALS. [FBrf0218020]
Hartmann et al., 2011, RNA 17(3): 453--468
Distinct regulatory programs establish widespread sex-specific alternative splicing in Drosophila melanogaster. [FBrf0212988]
Lanson et al., 2011, Hum. Mol. Genet. 20(13): 2510--2523
A Drosophila model of FUS-related neurodegeneration reveals genetic interaction between FUS and TDP-43. [FBrf0213887]
Wang et al., 2011, J. Clin. Invest. 121(10): 4118--4126
The ALS-associated proteins FUS and TDP-43 function together to affect Drosophila locomotion and life span. [FBrf0216240]
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All reviews listed in FlyBase were published before 2011