A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Gene Dmel\Arp87C

General Information
SymbolDmel\Arp87CSpeciesD. melanogaster
NameActin-related protein 87CAnnotation symbolCG6174
Feature typeprotein_coding_geneFlyBase IDFBgn0011745
Gene Model StatusCurrent Stock availability 4 publicly available
Also Known AsARP1, grid
Genomic Location
Chromosome (arm)3RRecombination map
Cytogenetic map87C5-87C5Sequence location3R:8,517,458..8,519,954 [+]

Genomic Maps

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modENCODE GBrowse
detailed view
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Automatically generated summary

See sections below for more information
The gene Actin-related protein 87C is referred to in FlyBase by the symbol Dmel\Arp87C (CG6174, FBgn0011745). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: structural constituent of cytoskeleton; actin binding. There is experimental evidence that it is involved in the biological process: axon transport of mitochondrion; retrograde axon cargo transport; mitosis; anterograde axon cargo transport. 8 alleles are reported. The phenotypes of these alleles are annotated with: embryonic/larval brain; synapse; embryonic/larval neuroblast. It has one annotated transcript and one annotated polypeptide. Protein features are: Actin, conserved site; Actin-like; Actin/actin-like conserved site. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderately high expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, at stages throughout the pupal period, in stages of adults of both sexes. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, larval fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult heart, adult fat body, adult testis, adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1639121_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of Arp87C. Gene sequence location is 3R:8517458..8519954.

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Description
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FB2011_10
FB2012_01
Alleles
Sequence features
Controlled Vocabulary Terms
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
87C5-87C5  
Limits computationally determined from genome sequence between P{lacW}Vha55j2E9 and P{PZ}CtBP03463  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
87C-87C  
87C-87C  
87C-87C  
(determined by in situ hybridisation)  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\Arp87C for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0082665 FBtr0082652 FBtr0082664 FBtr0082663 FBtr0113228 FBtr0113226 FBtr0113227 FBtr0114501 FBtr0114499 FBtr0114500 FBpp0082134 FBpp0082121 FBpp0082133 FBpp0082132 FBpp0112140 FBpp0112139 FBpp0112138 FBpp0112991 FBpp0112992 FBpp0112993 FBti0075010 FBti0131145 FBti0074850 FBti0126056 FBti0041145 FBti0128293 FBti0075319
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0082652
  1476
  376
Additional Transcript Data & Comments
Reported size (kB)
1.131 (longest cDNA)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0082121  
42.7  
376  
7.34  
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hidePolypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hide High-Throughput Expression Data
or
Untitled Document detailed view Su(fu)-RA Arp87C-RA CG31347-RA CG14391-RA CG14394-RD CG14394-RB CG14394-RC
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

modENCODE Temporal Expression Data for FBgn0011745


   Styles
Linear
Logarithmic
Heatmap
   Scales
max expr for FBgn0011745
Very low expression bin max
Moderate expression bin max
High expression bin max
Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderately high expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, at stages throughout the pupal period, in stages of adults of both sexes.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No expression (0 - 0)
 
Extremely low expression (1 - 10)
 
Very low expression (11 - 100)
 
Low expression (101 - 400)
 
Moderate expression (401 - 1400)
 
Moderately high expression (1401 - 4000)
 
High expression (4001 - 10000)
 
Very high expression (10001 - 100000)
 
Extremely high expression (100001 - 2000000)

Linear, scaled to maximum FBgn0011745 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 7269
embryo 02-04hr
 
 2594
embryo 04-06hr
 
 4256
embryo 06-08hr
 
 5026
embryo 08-10hr
 
 4859
embryo 10-12hr
 
 6465
embryo 12-14hr
 
 4023
embryo 14-16hr
 
 4407
embryo 16-18hr
 
 3713
embryo 18-20hr
 
 3773
embryo 20-22hr
 
 4472
embryo 22-24hr
 
 4182
larva L1
 
 4748
larva L2
 
 6514
larva L3 12hr old
 
 5314
larva L3 puffstage 1-2
 
 5791
larva L3 puffstage 3-6
 
 6098
larva L3 puffstage 7-9
 
 7765
white prepupae new
 
 8189
white prepupae 12hr
 
 7850
white prepupae 24hr
 
 6891
pupae 2d postWPP
 
 5902
pupae 3d postWPP
 
 4442
pupae 4d postWPP
 
 5669
adult male 01day
 
 4240
adult male 05day
 
 4269
adult male 30day
 
 4070
adult female 01day
 
 5730
adult female 05day
 
 6429
adult female 30day
 
 6656
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
Linear, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (7269)
embryo 02-04hr
 (2594)
embryo 04-06hr
 (4256)
embryo 06-08hr
 (5026)
embryo 08-10hr
 (4859)
embryo 10-12hr
 (6465)
embryo 12-14hr
 (4023)
embryo 14-16hr
 (4407)
embryo 16-18hr
 (3713)
embryo 18-20hr
 (3773)
embryo 20-22hr
 (4472)
embryo 22-24hr
 (4182)
larva L1
 (4748)
larva L2
 (6514)
larva L3 12hr old
 (5314)
larva L3 puffstage 1-2
 (5791)
larva L3 puffstage 3-6
 (6098)
larva L3 puffstage 7-9
 (7765)
white prepupae new
 (8189)
white prepupae 12hr
 (7850)
white prepupae 24hr
 (6891)
pupae 2d postWPP
 (5902)
pupae 3d postWPP
 (4442)
pupae 4d postWPP
 (5669)
adult male 01day
 (4240)
adult male 05day
 (4269)
adult male 30day
 (4070)
adult female 01day
 (5730)
adult female 05day
 (6429)
adult female 30day
 (6656)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (7269)
embryo 02-04hr
 (2594)
embryo 04-06hr
 (4256)
embryo 06-08hr
 (5026)
embryo 08-10hr
 (4859)
embryo 10-12hr
 (6465)
embryo 12-14hr
 (4023)
embryo 14-16hr
 (4407)
embryo 16-18hr
 (3713)
embryo 18-20hr
 (3773)
embryo 20-22hr
 (4472)
embryo 22-24hr
 (4182)
larva L1
 (4748)
larva L2
 (6514)
larva L3 12hr old
 (5314)
larva L3 puffstage 1-2
 (5791)
larva L3 puffstage 3-6
 (6098)
larva L3 puffstage 7-9
 (7765)
white prepupae new
 (8189)
white prepupae 12hr
 (7850)
white prepupae 24hr
 (6891)
pupae 2d postWPP
 (5902)
pupae 3d postWPP
 (4442)
pupae 4d postWPP
 (5669)
adult male 01day
 (4240)
adult male 05day
 (4269)
adult male 30day
 (4070)
adult female 01day
 (5730)
adult female 05day
 (6429)
adult female 30day
 (6656)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 7269
embryo 02-04hr
 
 2594
embryo 04-06hr
 
 4256
embryo 06-08hr
 
 5026
embryo 08-10hr
 
 4859
embryo 10-12hr
 
 6465
embryo 12-14hr
 
 4023
embryo 14-16hr
 
 4407
embryo 16-18hr
 
 3713
embryo 18-20hr
 
 3773
embryo 20-22hr
 
 4472
embryo 22-24hr
 
 4182
larva L1
 
 4748
larva L2
 
 6514
larva L3 12hr old
 
 5314
larva L3 puffstage 1-2
 
 5791
larva L3 puffstage 3-6
 
 6098
larva L3 puffstage 7-9
 
 7765
white prepupae new
 
 8189
white prepupae 12hr
 
 7850
white prepupae 24hr
 
 6891
pupae 2d postWPP
 
 5902
pupae 3d postWPP
 
 4442
pupae 4d postWPP
 
 5669
adult male 01day
 
 4240
adult male 05day
 
 4269
adult male 30day
 
 4070
adult female 01day
 
 5730
adult female 05day
 
 6429
adult female 30day
 
 6656
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 7269
embryo 02-04hr
 
 2594
embryo 04-06hr
 
 4256
embryo 06-08hr
 
 5026
embryo 08-10hr
 
 4859
embryo 10-12hr
 
 6465
embryo 12-14hr
 
 4023
embryo 14-16hr
 
 4407
embryo 16-18hr
 
 3713
embryo 18-20hr
 
 3773
embryo 20-22hr
 
 4472
embryo 22-24hr
 
 4182
larva L1
 
 4748
larva L2
 
 6514
larva L3 12hr old
 
 5314
larva L3 puffstage 1-2
 
 5791
larva L3 puffstage 3-6
 
 6098
larva L3 puffstage 7-9
 
 7765
white prepupae new
 
 8189
white prepupae 12hr
 
 7850
white prepupae 24hr
 
 6891
pupae 2d postWPP
 
 5902
pupae 3d postWPP
 
 4442
pupae 4d postWPP
 
 5669
adult male 01day
 
 4240
adult male 05day
 
 4269
adult male 30day
 
 4070
adult female 01day
 
 5730
adult female 05day
 
 6429
adult female 30day
 
 6656
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to maximum FBgn0011745 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 7269
embryo 02-04hr
 
 2594
embryo 04-06hr
 
 4256
embryo 06-08hr
 
 5026
embryo 08-10hr
 
 4859
embryo 10-12hr
 
 6465
embryo 12-14hr
 
 4023
embryo 14-16hr
 
 4407
embryo 16-18hr
 
 3713
embryo 18-20hr
 
 3773
embryo 20-22hr
 
 4472
embryo 22-24hr
 
 4182
larva L1
 
 4748
larva L2
 
 6514
larva L3 12hr old
 
 5314
larva L3 puffstage 1-2
 
 5791
larva L3 puffstage 3-6
 
 6098
larva L3 puffstage 7-9
 
 7765
white prepupae new
 
 8189
white prepupae 12hr
 
 7850
white prepupae 24hr
 
 6891
pupae 2d postWPP
 
 5902
pupae 3d postWPP
 
 4442
pupae 4d postWPP
 
 5669
adult male 01day
 
 4240
adult male 05day
 
 4269
adult male 30day
 
 4070
adult female 01day
 
 5730
adult female 05day
 
 6429
adult female 30day
 
 6656
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (7269)
embryo 02-04hr
 (2594)
embryo 04-06hr
 (4256)
embryo 06-08hr
 (5026)
embryo 08-10hr
 (4859)
embryo 10-12hr
 (6465)
embryo 12-14hr
 (4023)
embryo 14-16hr
 (4407)
embryo 16-18hr
 (3713)
embryo 18-20hr
 (3773)
embryo 20-22hr
 (4472)
embryo 22-24hr
 (4182)
larva L1
 (4748)
larva L2
 (6514)
larva L3 12hr old
 (5314)
larva L3 puffstage 1-2
 (5791)
larva L3 puffstage 3-6
 (6098)
larva L3 puffstage 7-9
 (7765)
white prepupae new
 (8189)
white prepupae 12hr
 (7850)
white prepupae 24hr
 (6891)
pupae 2d postWPP
 (5902)
pupae 3d postWPP
 (4442)
pupae 4d postWPP
 (5669)
adult male 01day
 (4240)
adult male 05day
 (4269)
adult male 30day
 (4070)
adult female 01day
 (5730)
adult female 05day
 (6429)
adult female 30day
 (6656)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (7269)
embryo 02-04hr
 (2594)
embryo 04-06hr
 (4256)
embryo 06-08hr
 (5026)
embryo 08-10hr
 (4859)
embryo 10-12hr
 (6465)
embryo 12-14hr
 (4023)
embryo 14-16hr
 (4407)
embryo 16-18hr
 (3713)
embryo 18-20hr
 (3773)
embryo 20-22hr
 (4472)
embryo 22-24hr
 (4182)
larva L1
 (4748)
larva L2
 (6514)
larva L3 12hr old
 (5314)
larva L3 puffstage 1-2
 (5791)
larva L3 puffstage 3-6
 (6098)
larva L3 puffstage 7-9
 (7765)
white prepupae new
 (8189)
white prepupae 12hr
 (7850)
white prepupae 24hr
 (6891)
pupae 2d postWPP
 (5902)
pupae 3d postWPP
 (4442)
pupae 4d postWPP
 (5669)
adult male 01day
 (4240)
adult male 05day
 (4269)
adult male 30day
 (4070)
adult female 01day
 (5730)
adult female 05day
 (6429)
adult female 30day
 (6656)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 7269
embryo 02-04hr
 
 2594
embryo 04-06hr
 
 4256
embryo 06-08hr
 
 5026
embryo 08-10hr
 
 4859
embryo 10-12hr
 
 6465
embryo 12-14hr
 
 4023
embryo 14-16hr
 
 4407
embryo 16-18hr
 
 3713
embryo 18-20hr
 
 3773
embryo 20-22hr
 
 4472
embryo 22-24hr
 
 4182
larva L1
 
 4748
larva L2
 
 6514
larva L3 12hr old
 
 5314
larva L3 puffstage 1-2
 
 5791
larva L3 puffstage 3-6
 
 6098
larva L3 puffstage 7-9
 
 7765
white prepupae new
 
 8189
white prepupae 12hr
 
 7850
white prepupae 24hr
 
 6891
pupae 2d postWPP
 
 5902
pupae 3d postWPP
 
 4442
pupae 4d postWPP
 
 5669
adult male 01day
 
 4240
adult male 05day
 
 4269
adult male 30day
 
 4070
adult female 01day
 
 5730
adult female 05day
 
 6429
adult female 30day
 
 6656
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 7269
embryo 02-04hr
 
 2594
embryo 04-06hr
 
 4256
embryo 06-08hr
 
 5026
embryo 08-10hr
 
 4859
embryo 10-12hr
 
 6465
embryo 12-14hr
 
 4023
embryo 14-16hr
 
 4407
embryo 16-18hr
 
 3713
embryo 18-20hr
 
 3773
embryo 20-22hr
 
 4472
embryo 22-24hr
 
 4182
larva L1
 
 4748
larva L2
 
 6514
larva L3 12hr old
 
 5314
larva L3 puffstage 1-2
 
 5791
larva L3 puffstage 3-6
 
 6098
larva L3 puffstage 7-9
 
 7765
white prepupae new
 
 8189
white prepupae 12hr
 
 7850
white prepupae 24hr
 
 6891
pupae 2d postWPP
 
 5902
pupae 3d postWPP
 
 4442
pupae 4d postWPP
 
 5669
adult male 01day
 
 4240
adult male 05day
 
 4269
adult male 30day
 
 4070
adult female 01day
 
 5730
adult female 05day
 
 6429
adult female 30day
 
 6656
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

FlyAtlas Anatomical Expression Data for FBgn0011745


   Styles
Linear
Logarithmic
Heatmap
Back-to-back
   Scales
max expr for FBgn0011745
Moderate expression bin max
High level expression bin max
Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, larval fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult heart, adult fat body, adult testis, adult carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (1000 - 25000)

Linear, scaled to maximum FBgn0011745 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 853.725
Larval Midgut
 
 1257.3
Larval Hindgut
 
 1225.1
Larval Malpighian Tubules
 
 1291.7
Larval Fat Body
 
 574
Larval Salivary Gland
 
 1724.9
Larval Trachea
 
 1223.3
Larval Carcass
 
 1078
Adult Head
 
 522.7
Adult Eye
 
 634.775
Adult Brain
 
 677.6
Adult Thoracic-Abdominal Ganglion
 
 981.3
Adult Crop
 
 813
Adult Midgut
 
 977
Adult Hindgut
 
 913.6
Adult Malpighian Tubules
 
 947.6
Adult Fat Body
 
 449.9
Adult Salivary Gland
 
 863
Adult Heart
 
 485.325
Adult VirginFemale Spermatheca
 
 769.2
Adult InseminatedFemale Spermatheca
 
 958.4
Adult Ovary
 
 567.7
Adult Testis
 
 246.6
Adult Male Accessory Gland
 
 696.1
Adult Carcass
 
 462.9
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 (853.725)
Larval Midgut
 (1257.3)
Larval Hindgut
 (1225.1)
Larval Malpighian Tubules
 (1291.7)
Larval Fat Body
 (574)
Larval Salivary Gland
 (1724.9)
Larval Trachea
 (1223.3)
Larval Carcass
 (1078)
Adult Head
 522.7
Adult Eye
 (634.775)
Adult Brain
 (677.6)
Adult Thoracic-Abdominal Ganglion
 (981.3)
Adult Crop
 (813)
Adult Midgut
 (977)
Adult Hindgut
 (913.6)
Adult Malpighian Tubules
 (947.6)
Adult Fat Body
 
 449.9
Adult Salivary Gland
 (863)
Adult Heart
 
 485.325
Adult VirginFemale Spermatheca
 (769.2)
Adult InseminatedFemale Spermatheca
 (958.4)
Adult Ovary
 (567.7)
Adult Testis
 
 246.6
Adult Male Accessory Gland
 (696.1)
Adult Carcass
 
 462.9
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 853.725
Larval Midgut
 (1257.3)
Larval Hindgut
 (1225.1)
Larval Malpighian Tubules
 (1291.7)
Larval Fat Body
 
 574
Larval Salivary Gland
 (1724.9)
Larval Trachea
 (1223.3)
Larval Carcass
 1078
Adult Head
 
 522.7
Adult Eye
 
 634.775
Adult Brain
 
 677.6
Adult Thoracic-Abdominal Ganglion
 
 981.3
Adult Crop
 
 813
Adult Midgut
 
 977
Adult Hindgut
 
 913.6
Adult Malpighian Tubules
 
 947.6
Adult Fat Body
 
 449.9
Adult Salivary Gland
 
 863
Adult Heart
 
 485.325
Adult VirginFemale Spermatheca
 
 769.2
Adult InseminatedFemale Spermatheca
 
 958.4
Adult Ovary
 
 567.7
Adult Testis
 
 246.6
Adult Male Accessory Gland
 
 696.1
Adult Carcass
 
 462.9
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 853.725
Larval Midgut
 
 1257.3
Larval Hindgut
 
 1225.1
Larval Malpighian Tubules
 
 1291.7
Larval Fat Body
 
 574
Larval Salivary Gland
 
 1724.9
Larval Trachea
 
 1223.3
Larval Carcass
 
 1078
Adult Head
 
 522.7
Adult Eye
 
 634.775
Adult Brain
 
 677.6
Adult Thoracic-Abdominal Ganglion
 
 981.3
Adult Crop
 
 813
Adult Midgut
 
 977
Adult Hindgut
 
 913.6
Adult Malpighian Tubules
 
 947.6
Adult Fat Body
 
 449.9
Adult Salivary Gland
 
 863
Adult Heart
 
 485.325
Adult VirginFemale Spermatheca
 
 769.2
Adult InseminatedFemale Spermatheca
 
 958.4
Adult Ovary
 
 567.7
Adult Testis
 
 246.6
Adult Male Accessory Gland
 
 696.1
Adult Carcass
 
 462.9
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to maximum FBgn0011745 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 853.725
Larval Midgut
 
 1257.3
Larval Hindgut
 
 1225.1
Larval Malpighian Tubules
 
 1291.7
Larval Fat Body
 
 574
Larval Salivary Gland
 
 1724.9
Larval Trachea
 
 1223.3
Larval Carcass
 
 1078
Adult Head
 
 522.7
Adult Eye
 
 634.775
Adult Brain
 
 677.6
Adult Thoracic-Abdominal Ganglion
 
 981.3
Adult Crop
 
 813
Adult Midgut
 
 977
Adult Hindgut
 
 913.6
Adult Malpighian Tubules
 
 947.6
Adult Fat Body
 
 449.9
Adult Salivary Gland
 
 863
Adult Heart
 
 485.325
Adult VirginFemale Spermatheca
 
 769.2
Adult InseminatedFemale Spermatheca
 
 958.4
Adult Ovary
 
 567.7
Adult Testis
 
 246.6
Adult Male Accessory Gland
 
 696.1
Adult Carcass
 
 462.9
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 (853.725)
Larval Midgut
 (1257.3)
Larval Hindgut
 (1225.1)
Larval Malpighian Tubules
 (1291.7)
Larval Fat Body
 574
Larval Salivary Gland
 (1724.9)
Larval Trachea
 (1223.3)
Larval Carcass
 (1078)
Adult Head
 522.7
Adult Eye
 634.775
Adult Brain
 677.6
Adult Thoracic-Abdominal Ganglion
 (981.3)
Adult Crop
 813
Adult Midgut
 (977)
Adult Hindgut
 (913.6)
Adult Malpighian Tubules
 (947.6)
Adult Fat Body
 
 449.9
Adult Salivary Gland
 (863)
Adult Heart
 
 485.325
Adult VirginFemale Spermatheca
 769.2
Adult InseminatedFemale Spermatheca
 (958.4)
Adult Ovary
 567.7
Adult Testis
 
 246.6
Adult Male Accessory Gland
 696.1
Adult Carcass
 
 462.9
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 853.725
Larval Midgut
 1257.3
Larval Hindgut
 1225.1
Larval Malpighian Tubules
 1291.7
Larval Fat Body
 
 574
Larval Salivary Gland
 (1724.9)
Larval Trachea
 1223.3
Larval Carcass
 1078
Adult Head
 
 522.7
Adult Eye
 
 634.775
Adult Brain
 
 677.6
Adult Thoracic-Abdominal Ganglion
 
 981.3
Adult Crop
 
 813
Adult Midgut
 
 977
Adult Hindgut
 
 913.6
Adult Malpighian Tubules
 
 947.6
Adult Fat Body
 
 449.9
Adult Salivary Gland
 
 863
Adult Heart
 
 485.325
Adult VirginFemale Spermatheca
 
 769.2
Adult InseminatedFemale Spermatheca
 
 958.4
Adult Ovary
 
 567.7
Adult Testis
 
 246.6
Adult Male Accessory Gland
 
 696.1
Adult Carcass
 
 462.9
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 853.725
Larval Midgut
 
 1257.3
Larval Hindgut
 
 1225.1
Larval Malpighian Tubules
 
 1291.7
Larval Fat Body
 
 574
Larval Salivary Gland
 
 1724.9
Larval Trachea
 
 1223.3
Larval Carcass
 
 1078
Adult Head
 
 522.7
Adult Eye
 
 634.775
Adult Brain
 
 677.6
Adult Thoracic-Abdominal Ganglion
 
 981.3
Adult Crop
 
 813
Adult Midgut
 
 977
Adult Hindgut
 
 913.6
Adult Malpighian Tubules
 
 947.6
Adult Fat Body
 
 449.9
Adult Salivary Gland
 
 863
Adult Heart
 
 485.325
Adult VirginFemale Spermatheca
 
 769.2
Adult InseminatedFemale Spermatheca
 
 958.4
Adult Ovary
 
 567.7
Adult Testis
 
 246.6
Adult Male Accessory Gland
 
 696.1
Adult Carcass
 
 462.9
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body
 
 
Adult Salivary Gland
 
 
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass
 
 

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 522.7
 
NA 
Eye
 
 634.775
 
NA 
Brain
 
 677.6
 
853.725 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 981.3
 
NA 
Crop
 
 813
 
1257.3 
Midgut
 
 977
 
1225.1 
Hindgut
 
 913.6
 
1291.7 
Malpighian Tubules
 
 947.6
 
574 
Fat Body
 
 449.9
 
1724.9 
Salivary Gland
 
 863
 
NA 
Heart
 
 485.325
 
1223.3 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 769.2
 
NA 
InseminatedFemale Spermatheca
 
 958.4
 
NA 
Ovary
 
 567.7
 
NA 
Testis
 
 246.6
 
NA 
Male Accessory Gland
 
 696.1
 
1078 
Carcass
 
 462.9

modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyExpress - Embryonic expression images (BDGP data)
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
hide Classical Alleles ( 5 )
For All Classical Alleles Show

Allele of Arp87CClassMutagenStocksKnown lesion
Arp87Cc044252 --
Arp87CG37091 --
Arp87C10 Yes
Arp87C20 Yes
Arp87Cunspecified
0 --
hide Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show

Allele of Arp87CClassMutagenStocksKnown lesion
Arp87CHM052591 Yes
Arp87CdsRNA.cEa0 Yes
Arp87CGD166470 Yes
hide Aneuploid Aberrations
Disrupted in
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
UAS construct
Insertions
Type of insertions
Name
Expression data
miscellaneous insertions
insertion of mobile activating element
hide Gene Ontology: Function, Process & Cellular Component ( 12 unique terms )
hide Terms Based on Experimental Evidence ( 5 terms )
Molecular Function ( 0 terms)
Biological Process
CV term
References
inferred from mutant phenotype
Cellular Component
CV term
References
hide Terms Based on Predictions or Assertions ( 7 terms )
Molecular Function
CV term
References
inferred from sequence or structural similarity with Saccharomyces ARP1
inferred from electronic annotation with InterPro:IPR004001
inferred from sequence or structural similarity
Biological Process
CV term
References
inferred from sequence or structural similarity
inferred from sequence or structural similarity with Saccharomyces ARP1
Cellular Component
CV term
References
inferred from sequence or structural similarity
inferred from sequence or structural similarity with Saccharomyces ARP1
hide Sequence Ontology: Class of Gene
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hide Summary of Physical Interactions
Protein-protein
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Interacts with
Please look at the allele data for full details of the genetic interactions
Arp87C allele
Gene
References
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Linkouts
BioGRID - A database of protein and genetic interactions
DPiM - DPiM, Drosophila Protein interaction Map
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs
Linkouts
InParanoid A subset of ortholog calls from InParanoid.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
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hide Stocks Listed in FlyBase ( 4 )
Bloomington
Harvard
hide Genomic Clones ( 1 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
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Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
hide RNAi & Array Information
Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
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Source for database identity of
Source for database merge of
Source for merge of: Arp87C grid
Additional comments
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dsRNA made from templates generated with primers directed against this gene tested in RNAi screen for effects on Kc167 and S2R+ cell morphology.
The dynactin complex, (which contains Gl and Arp87C) functions locally within the presynaptic arbor to promote synapse stability.
Mutant larvae show progressive distal paralysis that causes them to flip their tails upward as they crawl. Axonal transport defects are seen.
Isolation and characterisation of actin-related proteins Arp14D, Arp53D, Arp66B and Arp87C.
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Linkouts
BioGRID - A database of protein and genetic interactions
DPiM - DPiM, Drosophila Protein interaction Map
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InParanoid A subset of ortholog calls from InParanoid.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Synonyms & Secondary IDs ( 15 )
Reported As
Symbol Synonym
Actr87C
 
Name Synonym
actin-related protein 1
Actin-related protein 87C
Secondary FlyBase IDs
  • FBgn0026240
hide References ( 42 )
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hide Recent research papers ( 1 )
Schnall-Levin et al., 2010, Proc. Natl. Acad. Sci. U.S.A. 107(36): 15751--15756
Conserved microRNA targeting in Drosophila is as widespread in coding regions as in 3'UTRs. [FBrf0211777]
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All reviews listed in FlyBase were published before 2010