CT1239
Please see the JBrowse view of Dmel\Pxn for information on other features
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AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.
Gene model reviewed during 5.55
Gene model reviewed during 5.46
Annotated transcripts do not represent all supported alternative splices within 5' UTR.
Low-frequency RNA-Seq exon junction(s) not annotated.
Gene model reviewed during 5.56
4.9 (compiled cDNA)
1535 (aa); 150 (kD)
Homotrimer; disulfide-linked.
Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\Pxn using the Feature Mapper tool.
The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).
Comment: reported as crystal cell specific anlage
Comment: reported as plasmatocytes anlage
Pxn is transcribed primarily in hemocytes and later in cells of the fat body. Transcription starts in the two plates of the procephalic mesoderm at stage 10. Expression in the hemocytes continues as the hemocyte population expands and spreads through the embryo until at later stages Pxn transcripts are found at sites of basement membrane formation, e.g. around the gut, nerve cord, and brain.
Pxn is an early maturation marker in hemocytes.
Pxn protein is localized to hemocytes. It is initially found in the two plates of the procephalic mesoderm at stage 10. Expression in the hemocytes continues as the hemocyte population expands and spreads through the embryo until at later stages Pxn protein is found at sites of basement membrane formation, e.g. around the gut, nerve cord, and brain.
JBrowse - Visual display of RNA-Seq signals
View Dmel\Pxn in JBrowsePlease Note FlyBase no longer curates genomic clone accessions so this list may not be complete
Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.
For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.
polyclonal