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Gene Dmel\tRNA:K2:42Ad
| General Information | ||||||||
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| Symbol | Dmel\tRNA:K2:42Ad | Species | D. melanogaster | |||||
| Name | transfer RNA:lys2:42Ad | Annotation symbol | CR30515 | |||||
| Feature type | tRNA_gene | FlyBase ID | FBgn0011890 | |||||
| Gene Model Status | Current | Stock availability | None publicly available | |||||
| Genomic Location | ||||||||
| Chromosome (arm) | 2R | Recombination map | ||||||
| Cytogenetic map | 42A12-42A12 | Sequence location | 2R:2,059,001..2,059,073 [-] | |||||
Genomic Maps  | 
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 Summary Information | ||||||||
| Automatically generated summary
See sections below for more information | The gene transfer RNA:lys2:42Ad is referred to in FlyBase by the symbol Dmel\tRNA:K2:42Ad (CR30515, FBgn0011890). It is a tRNA_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: AAG codon-amino acid adaptor activity. It is reported to be involved in the biological process: translation. No alleles are reported. It has one annotated transcript. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very low expression to a trough of no expression detected. Peak expression observed in adult male stages. CAVEAT: These RNA-Seq temporal profiles depend upon RNA-Seq reads that are uniquely placed in the genome. For this reason, genes such as histones, Stellates and many classes of RNA genes that are present in multiple exact or near exact copies in the genome, expression levels may be reported as much lower than their true values. Summary of FlyAtlas Anatomical Expression Data: No FlyAtlas data available because no Affy2 ProbeSet aligns to an exon of tRNA:K2:42Ad. Comments on Affy2 ProbeSet: No relevant information because no Affy2 ProbeSet aligns to an exon of tRNA:K2:42Ad. Gene sequence location is 2R:2059001..2059073. | |||||||
| User Contributed Data | ||||||||
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Recent Updates
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| Description |
What does this section display?
This section contains items that were added to this record for each release.
It currently only tracks new links between this FlyBase report and other
FlyBase data classes (e.g. genes, references, stocks) or controlled
vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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| FB2013_03 | ||||||||
| FB2013_02 | ||||||||
| All updates | Click here to see a list of all updates to this record from FB2010_08 and on. | |||||||
| Detailed Mapping Data | ||||||||
| FlyBase Computed Cytological Location | ||||||||
Cytogenetic map Evidence for location 42A12-42A12
Limits computationally determined from genome sequence between P{lacW}l(2)k09848k09848&P{EP}EP407 and P{lacW}geminink14019&P{PZ}Adf101349 | ||||||||
| Experimentally Determined Cytological Location | ||||||||
Cytogenetic map Notes References 42A-42A
(determined by in situ hybridisation)
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| Experimentally Determined Recombination Data | ||||||||
| Location | ||||||||
| Left of (cM) | ||||||||
| Right of (cM) | ||||||||
| Notes | ||||||||
| Gene Model & Products | ||||||||
Please see the
GBrowse view of
Dmel\tRNA:K2:42Ad for information on other features To submit a correction to a
gene model please use the Contact
FlyBase form 
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| Comments on Gene Model | ||||||||
| Transcript Data | ||||||||
| Annotated Transcripts | ||||||||
Name FlyBase ID RefSeq ID Length (nt) FBtr0086007
73 | ||||||||
| Additional Transcript Data & Comments | ||||||||
| Reported size (kB) | ||||||||
| Comments | ||||||||
| External Data | ||||||||
| Crossreferences | ||||||||
| Sequences Consistent with the Gene Model
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| DDBJ / EMBL / GenBank | DNA sequence Name | |||||||
| Mapped Features | ||||||||
Mapped Features have been reorganized, please
see this article for details. Additional mapped features and mutations can
be found on GBrowse or related reports. Type Symbol &
Location Additional Notes References | ||||||||
| External Data | ||||||||
| Linkouts | ||||||||
| Crossreferences | ||||||||
| Expression Data | ||||||||
| Transcript Expression | ||||||||
| Additional Descriptive Data | ||||||||
| Marker for | ||||||||
| Subcellular Localization | ||||||||
| CV Term | ||||||||
| Expression Deduced from Reporters | ||||||||
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High-Throughput Expression Data
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| Associated Tools | ||||||||
| Reference |
See Gelbart and Emmert, 2010.10.13
for analysis details and data files for all genes.
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FlyAtlas Anatomy Microarray
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FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
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modENCODE Anatomy RNA-Seq
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modENCODE Development RNA-Seq
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modENCODE Temporal Expression Data (Graveley et al., 2011) | ||||||||
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modENCODE Cell Lines RNA-Seq
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modENCODE Treatments RNA-Seq
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Expression Clusters
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External Data & Images
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| Linkouts | ||||||||
| Alleles & Phenotypes | ||||||||
| Summary of Allele Phenotypes | ||||||||
Phenotype manifest
in Allele | ||||||||
| Classical Alleles ( 0 ) | ||||||||
| For All Classical Alleles Show | ||||||||
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| Alleles Carried on Transgenic Constructs
( 0 ) | ||||||||
| For All Alleles Carried on Transgenic Constructs Show | ||||||||
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| Aneuploid Aberrations | ||||||||
| Transgenic Constructs & Insertions
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| Transgenic Constructs | ||||||||
Type of
construct Name Expression
data | ||||||||
| Insertions | ||||||||
Type of insertions Name Expression
data | ||||||||
| Gene Ontology: Function, Process
& Cellular Component ( 4 unique terms ) | ||||||||
| Terms Based on
Experimental Evidence ( 0 terms ) | ||||||||
| Terms Based on Predictions or
Assertions ( 4 terms ) | ||||||||
| Molecular Function | ||||||||
CV term References | ||||||||
inferred from sequence model non-traceable author statement | ||||||||
| Biological Process | ||||||||
CV term References | ||||||||
| Cellular Component | ||||||||
CV term References | ||||||||
| Sequence Ontology: Class of Gene | ||||||||
| Interactions & Pathways | ||||||||
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Summary of Physical Interactions
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| Summary of Genetic Interactions | ||||||||
| Interacts with | Please look at the allele data
for full details of the genetic interactions tRNA:K2:42Ad allele Gene References | |||||||
| External Data | ||||||||
| Linkouts | ||||||||
| Orthologs
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OrthoDB Orthologs (0)
- based on analysis using Dmel annotation version 5.41
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| OrthoDB Ortholog Groups | ||||||||
OrthoDB orthology group searches Drosophila inclusive ortholog search No orthologs identified Dipteran inclusive ortholog search No orthologs identified Insect inclusive ortholog search No orthologs identified Arthropod inclusive ortholog search No orthologs identified Metazoa inclusive ortholog search No orthologs identified | ||||||||
| Orthologs in Drosophila Species (None identified) | ||||||||
No orthologies identified | ||||||||
| Orthologs in non-Drosophila Dipterans (None identified) | ||||||||
No non-Drosophilid orthologies identified | ||||||||
| Orthologs in non-Dipteran Insects (None identified) | ||||||||
No non-Dipteran orthologies identified | ||||||||
| Orthologs in non-Insect Arthropods (None identified) | ||||||||
No non-Insect Arthropod orthologies identified | ||||||||
| Orthologs in non-Arthropod Metazoa (None identified) | ||||||||
No non-Arthropod Metazoa orthologies identified | ||||||||
| Human Orthologs (0) | ||||||||
Gene OMIM HGNC | ||||||||
| AAA Orthologs (0)
based on analysis using Dmel annotation version 4.3
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No orthologs identified
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| Stocks & Reagents | ||||||||
| Stocks Listed in FlyBase ( 0 ) | ||||||||
| Genomic Clones ( 2 ) | ||||||||
Please Note FlyBase no
longer curates genomic clone accessions so this list
may not be complete | ||||||||
| cDNA Clones ( 0 ) | ||||||||
This section lists
cDNAs and ESTs that fall within the genomic extent
of the gene model, which may include cDNAs and ESTs
of genes within introns, or of overlapping genes.
Please see GBrowse for alignment of the cDNAs and ESTs
to the gene model. | ||||||||
| cDNA Clones, Fully Sequenced | ||||||||
| BDGP DGC clones | ||||||||
| Other clones | ||||||||
| cDNA Clones, End Sequenced (ESTs) | ||||||||
| BDGP DGC clones | ||||||||
| Other clones | ||||||||
| RNAi & Array Information | ||||||||
| Linkouts | GenomeRNAi
- GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
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| Other Information | ||||||||
| Discoverer | ||||||||
| Etymology | ||||||||
| Identification | ||||||||
| Relationship to Other Genes | ||||||||
| Source for database identity of | ||||||||
| Source for database merge of | Source for merge of: tRNA:K2:42Ad tRNA:K:CTT:AE002769-a | |||||||
| Additional comments | ||||||||
| Other Comments | ||||||||
New annotation (CR30515) in release 3 of the genome annotation. tRNA gene: amino acid=Lys, anticodon=CTT. | ||||||||
| External Crossreferences & Linkouts
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| Sequence Crossreferences | ||||||||
Entrez Gene
- A searchable database of RefSeq genes.
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| Other Crossreferences | ||||||||
| Linkouts | ||||||||
FlyMine
- Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi
- GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
modMine
- Data generated by the modENCODE project.
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| Synonyms & Secondary IDs
( 11 ) | ||||||||
| Reported As | ||||||||
| Symbol Synonym | 35SLys AE002769.trna3-LysCTT CR30315 CR30515 tRNA:K2 tRNA:K2:42Ad tRNA:K:CTT:AE002769-a tRNA:lys2:42Ad tRNALys2 tRNAlys | |||||||
| Name Synonym | transfer RNA:lys2:42Ad | |||||||
| Secondary FlyBase IDs | ||||||||
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| References ( 12 ) | ||||||||
| Research paper |
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| Review |
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| Personal communication to FlyBase |
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| FlyBase analysis |
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