Gene Dvir\Cp15

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General Information

Symbol

Dvir\Cp15

Species

D. virilis

Name

Chorion protein 15

Annotation symbol

GJ13067

Feature type

protein_coding_gene

FlyBase ID

FBgn0013068

Gene Model Status

Current

Stock availability

None publicly available

Also Known As

cp15, s15

Genomic Location

Chromosome (arm)

scaffold_13049

Recombination map

Cytogenetic map

Sequence location

scaffold_13049:6,381,365..6,381,783 [+]

Genomic Maps

Summary Information

Automatically generated summary

See sections below for more information

The gene Chorion protein 15 is referred to in FlyBase by the symbol Dvir\Cp15 (GJ13067, FBgn0013068). It is a protein_coding_gene from Drosophila virilis. Its molecular function is unknown. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process: multicellular organismal development. No alleles are reported. It has one annotated transcript and one annotated polypeptide. Protein features are: Chorion 2. Gene sequence location is scaffold_13049:6381365..6381783.

Recent Updates

Description

What does this section display?

This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).

What does this section not display?

This section does not currently display links that were removed or gene model changes.

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FB2013_03

FB2013_02

All updates

Click here to see a list of all updates to this record from FB2010_08 and on.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Gene Model & Products

Please see the GBrowse view of Dvir\Cp15 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Comments on Gene Model

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

Dvir\Cp15-RA

FBtr0228992

XM_002046735

351

116

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

Dvir\Cp15-PA

FBpp0227484

12.0

116

9.38

XP_002046771

EDW69113

Additional Polypeptide Data & Comments

Reported size (kDa)

Comments

External Data

Linkouts

Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Chorion 2 (IPR005649)

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

P13424

UniProtKB/TrEMBL

Mapped Features

Mapped Features have been reorganized, please see this article for details.

Additional mapped features and mutations can be found on GBrowse or related reports.

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

Crossreferences

Expression Data

Transcript Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization (GO Cellular Component)

CV term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

Reference

See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

FlyAtlas Anatomy Microarray

modENCODE Anatomy RNA-Seq

modENCODE Development RNA-Seq

modENCODE Cell Lines RNA-Seq

modENCODE Treatments RNA-Seq

Expression Clusters

External Data & Images

Linkouts

Alleles & Phenotypes

Summary of Allele Phenotypes

Phenotype manifest in

Allele

Classical Alleles ( 0 )

For All Classical Alleles Show

Allele of Dvir\Cp15	Class	Mutagen	Stocks	Known lesion

Alleles Carried on Transgenic Constructs ( 0 )

For All Alleles Carried on Transgenic Constructs Show

Allele of Dvir\Cp15	Class	Mutagen	Stocks	Known lesion

Aneuploid Aberrations

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

Insertions

Type of insertions

Name

Expression data

Gene Ontology: Function, Process & Cellular Component ( 2 unique terms )

Terms Based on Experimental Evidence ( 0 terms )

Terms Based on Predictions or Assertions ( 2 terms )

Molecular Function ( 0 terms)

Biological Process

CV term

Evidence

References

multicellular organismal development

inferred from electronic annotation with InterPro:IPR005649

(FlyBase Curators et al., 2004-)

Cellular Component

CV term

Evidence

References

chorion

inferred from electronic annotation with InterPro:IPR005649

(FlyBase Curators et al., 2004-)

Sequence Ontology: Class of Gene

gene

nuclear_gene

(Drosophila 12 Genomes Consortium, 2008)

protein_coding_gene

(Drosophila 12 Genomes Consortium, 2008)

Interactions & Pathways

Summary of Physical Interactions

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

Dvir\Cp15 allele

Gene

References

External Data

Linkouts

Orthologs

OrthoDB Orthologs (0) - based on analysis using Dmel annotation version 5.41

OrthoDB Ortholog Groups

OrthoDB orthology group searches

(Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288)

Drosophila inclusive ortholog search

No orthologs identified

Dipteran inclusive ortholog search

No orthologs identified

Insect inclusive ortholog search

No orthologs identified

Arthropod inclusive ortholog search

No orthologs identified

Metazoa inclusive ortholog search

No orthologs identified

Ortholog(s) in Drosophila melanogaster (None identified)

No D. melanogaster orthologies identified

Human Orthologs (0)

Gene

OMIM

HGNC

AAA Orthologs (0) based on analysis using Dmel annotation version 4.3

No orthologs identified

Stocks & Reagents

Stocks Listed in FlyBase ( 0 )

Genomic Clones ( 0 )

cDNA Clones ( 0 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones

Other clones

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi & Array Information

Linkouts

Antibody Information

Other Information

Discoverer

Etymology

Identification

Relationship to Other Genes

Source for database identity of

Source for database merge of

Additional comments

Other Comments

The temporally specific follicular expression of Cp15, Cp16, Cp18 and Cp19 and gene organization has been conserved between D.melanogaster, D.subobscura, D.virilis and D.grimshawi.

(Fenerjian et al., 1989)

External Crossreferences & Linkouts

Sequence Crossreferences

RefSeq (Transcripts)

•

XM_002046735

RefSeq (Proteins)

•

XP_002046771

DDBJ / EMBL / GenBank

•

Entrez Gene - A searchable database of RefSeq genes.

•

6623252

UniProtKB/Swiss-Prot

•

P13424

Other Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Chorion 2 (IPR005649)

Linkouts

FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans

•

FBgn0013068

Synonyms & Secondary IDs ( 7 )

Reported As

Symbol Synonym

cp15

(McVean and Vieira, 1999)

Cp15

(Drosophila 12 Genomes Consortium, 2008)

dvir_GLEANR_12988

(Drosophila 12 Genomes Consortium, 2008)

Dvir\Cp15

(Drosophila 12 Genomes Consortium, 2008)

Dvs15

(Vlachou and Komitopoulou, 2001)

s15

(Swimmer et al., 1990, Fenerjian et al., 1989)

Name Synonym

Chorion protein 15

Secondary FlyBase IDs

References ( 14 )

Research paper

Drosophila 12 Genomes Consortium et al., 2007, Nature 450(7167): 203--218: Evolution of genes and genomes on the Drosophila phylogeny. [FBrf0200326]
Vlachou and Komitopoulou, 2001, Gene 270(1-2): 41--52: The chorion genes of the medfly. [FBrf0136740]
Miller et al., 2000, Mol. Biol. Evol. 17(11): 1597--1609: Evolutionary dynamics of the SGM transposon family in the Drosophila obscura species group. [FBrf0131362]
McVean and Vieira, 1999, J. Mol. Evol. 49(1): 63--75: The evolution of codon preferences in Drosophila: a maximum-likelihood approach to parameter estimation and hypothesis testing. [FBrf0108927]
Trougakos and Margaritis, 1998, J. Struct. Biol. 123(2): 111--123: Immunolocalization of the temporally 'early' secreted major structural chorion proteins, Dvs38 and Dvs36, in the eggshell layers and regions of Drosophila virilis. [FBrf0105948]
Trougakos and Margaritis, 1998, J. Struct. Biol. 123(2): 97--110: The formation of the functional chorion structure of Drosophila virilis involves inercalation of the 'middle' and 'late' major chorion proteins: a general model for chorion assembly in Drosophilidae. [FBrf0105949]
Moriyama and Powell, 1997, J. Mol. Evol. 45(5): 514--523: Codon usage bias and tRNA abundance in Drosophila. [FBrf0098854]
Akashi, 1994, Genetics 136(3): 927--935: Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy. [FBrf0072469]
Moriyama and Gojobori, 1992, Genetics 130(4): 855--864: Rates of synonymous substitution and base composition of nuclear genes in Drosophila. [FBrf0056265]
Swimmer et al., 1990, J. Mol. Biol. 215: 225--235: Evolution of the autosomal chorion cluster in Drosophila. [FBrf0052449]
Fenerjian et al., 1989, J. Mol. Evol. 29: 108--125: Evolution of the autosomal chorion cluster in Drosophila. [FBrf0050449]

Personal communication to FlyBase

Drosophila 12 Genomes Consortium, 2008, personal communication to FlyBase: Symbols and class of gene information for the GLEANR consensus sequences of the 11 sequenced non-melanogaster Drosophila species (Drosophila ananassae, erecta, grimshawi, mojavensis, persimilis, pseudoobscura, sechellia, simulans, willistoni, virilis and yakuba). [FBrf0202436]
FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms.: Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215]

FlyBase analysis

FlyBase, 2008, Newly sequenced Drosophila genomes: associations of GLEANR gene predictions (Releases 1.0) with previously known genes in FlyBase.: Newly sequenced Drosophila genomes: associations of GLEANR gene predictions (Releases 1.0) with previously known genes in FlyBase. [FBrf0202439]