Gene Dvir\bb

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General Information

Symbol

Dvir\bb

Species

D. virilis

Name

bobbed

Annotation symbol

Feature type

rRNA_gene

FlyBase ID

FBgn0013103

Gene Model Status

Not Applicable

Stock availability

None publicly available

Genomic Location

Chromosome (arm)

Recombination map

1-170.5

Cytogenetic map

Sequence location

Summary Information

Automatically generated summary

See sections below for more information

The gene bobbed is referred to in FlyBase by the symbol Dvir\bb (FBgn0013103). It is a rRNA_gene from Drosophila virilis. Its molecular function is unknown. The biological processes in which it is involved are not known. One allele is reported. No phenotypic data is available. It has no annotated transcripts. Gene has not been localized to the genome sequence.

Recent Updates

Description

What does this section display?

This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).

What does this section not display?

This section does not currently display links that were removed or gene model changes.

Update Feed

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FB2013_03

FB2013_02

All updates

Click here to see a list of all updates to this record from FB2010_08 and on.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

1-170.5

Left of (cM)

Right of (cM)

Notes

Gene Model & Products

Comments on Gene Model

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

Additional Polypeptide Data & Comments

Reported size (kDa)

Comments

External Data

Linkouts

Crossreferences

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Mapped Features

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

Crossreferences

Expression Data

Transcript Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization (GO Cellular Component)

CV term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

Reference

See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

FlyAtlas Anatomy Microarray

modENCODE Anatomy RNA-Seq

modENCODE Development RNA-Seq

modENCODE Cell Lines RNA-Seq

modENCODE Treatments RNA-Seq

Expression Clusters

External Data & Images

Linkouts

Alleles & Phenotypes

Summary of Allele Phenotypes

Other Phenotypes

Allele

visible | recessive

Dvir\bb¹

Phenotype manifest in

Allele

macrochaeta | female

Dvir\bb¹

sternite | female

Dvir\bb¹

Classical Alleles ( 1 )

For All Classical Alleles Show

Allele of Dvir\bb	Class	Mutagen	Stocks	Known lesion
Dvir\bb¹			0	--

Alleles Carried on Transgenic Constructs ( 0 )

For All Alleles Carried on Transgenic Constructs Show

Allele of Dvir\bb	Class	Mutagen	Stocks	Known lesion

Aneuploid Aberrations

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

Insertions

Type of insertions

Name

Expression data

Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )

Terms Based on Experimental Evidence ( 0 terms )

Terms Based on Predictions or Assertions ( 0 terms )

Sequence Ontology: Class of Gene

gene_array

nuclear_gene

rRNA_gene

Interactions & Pathways

Summary of Physical Interactions

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

Dvir\bb allele

Gene

References

External Data

Linkouts

Orthologs

OrthoDB Orthologs (0) - based on analysis using Dmel annotation version 5.41

OrthoDB Ortholog Groups

OrthoDB orthology group searches

(Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288)

Drosophila inclusive ortholog search

No orthologs identified

Dipteran inclusive ortholog search

No orthologs identified

Insect inclusive ortholog search

No orthologs identified

Arthropod inclusive ortholog search

No orthologs identified

Metazoa inclusive ortholog search

No orthologs identified

Ortholog(s) in Drosophila melanogaster (None identified)

No D. melanogaster orthologies identified

Human Orthologs (0)

Gene

OMIM

HGNC

AAA Orthologs (0) based on analysis using Dmel annotation version 4.3

No orthologs identified

Stocks & Reagents

Stocks Listed in FlyBase ( 0 )

Genomic Clones ( 0 )

cDNA Clones ( 0 )

cDNA Clones, Fully Sequenced

BDGP DGC clones

Other clones

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi & Array Information

Linkouts

Antibody Information

Other Information

Discoverer

Etymology

Identification

Relationship to Other Genes

Source for database identity of

Source for database merge of

Additional comments

Other Comments

Using Drosophila, periodical cicades and hominid primates, it is demonstrated that the molecular clock based on 12S rRNA genes ticks at significantly different relative rates depending on which taxa and which region of the gene are examined.

(Simon et al., 1996)

The internal transcribed spacer regions of the bb locus of a number of Drosophila species have been analysed and compared.

(Schlotterer et al., 1994)

The nucleotide sequence of bb from twelve species of the obscura group reveals the presence of a secondary structure in the A+T-rich region that may explain the generation of minor insertions/deletions found in this region that generate length polymorphisms.

(Monforte et al., 1993)

External Crossreferences & Linkouts

Sequence Crossreferences

DDBJ / EMBL / GenBank

•

Other Crossreferences

Linkouts

Synonyms & Secondary IDs ( 3 )

Reported As

Symbol Synonym

Dvir\bb

Name Synonym

bobbed

ribosomal RNA

(Murtif, 1994.5.25)

Secondary FlyBase IDs

References ( 11 )

Research paper

Remsen and DeSalle, 1998, Molec. Phylog. Evol. 9(2): 225--235: Character congruence of multiple data partitions and the origin of the Hawaiian Drosophilidae. [FBrf0102386]
Simon et al., 1996, Mol. Biol. Evol. 13(7): 923--932: Large differences in substitutional pattern and evolutionary rate of 12S ribosomal RNA genes. [FBrf0089903]
Schlotterer et al., 1994, Mol. Biol. Evol. 11(3): 513--522: Comparative evolutionary analysis of rDNA ITS regions in Drosophila. [FBrf0074382]
Lozovskaya et al., 1993, Chromosoma 102(4): 253--266: A combined molecular and cytogenetic approach to genome evolution in Drosophila using large-fragment DNA cloning. [FBrf0057925]
Monforte et al., 1993, J. Mol. Evol. 36(3): 214--223: Characterization of the length polymorphism in the A+T-rich region of the Drosophila obscura group species. [FBrf0058954]
Pelandakis and Solignac, 1993, J. Mol. Evol. 37(5): 525--543: Molecular phylogeny of Drosophila based on ribosomal RNA sequences. [FBrf0064334]
DeSalle and Grimaldi, 1992, J. Hered. 83(3): 182--188: Characters and the systematics of Drosophilidae. [FBrf0056515]
Fujii, 1942, Cytologia 12: 435--459: Further studies on the salivary gland chromosomes of Drosophila virilis. [FBrf0005652]
Sturtevant and Novitski, 1941, Genetics 26: 517--541: The homologies of the chromosome elements in the genus Drosophila. [FBrf0005422]

Personal communication to FlyBase

Kress, 1996.7.12, Dvir gene updates.: Dvir gene updates. [FBrf0089315]

DNA/RNA sequence record

Murtif, 1994.5.25, GenBank/EMBL/DDBJ: M30872: Drosophila virilis ribosomal RNA gene, transcribed spacer region. [FBrf0118203]