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Gene Dmel\Nca

General Information
Symbol	Dmel\Nca	Species	D. melanogaster
Name	Neurocalcin	Annotation symbol	CG7641
Feature type	protein_coding_gene	FlyBase ID	FBgn0013303
Gene Model Status	Current	Stock availability	3 publicly available
Also Known As	nca
Genomic Location
Chromosome (arm)	3L	Recombination map	3-
Cytogenetic map	76D8-76D8	Sequence location	3L:19,985,023..19,990,798 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Neurocalcin is referred to in FlyBase by the symbol Dmel\Nca (CG7641, FBgn0013303). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: calcium ion binding. It is reported to be involved in the biological process: negative regulation of phosphorylation. 4 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Calcium-binding EF-hand; EF-HAND 2; EF-Hand 1, calcium-binding site; EF-hand; EF-hand-like domain; Recoverin. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed at stages throughout embryogenesis, during late larval stages, at stages throughout the pupal period, in stages of adults of both sexes. Summary of FlyAtlas Anatomical Expression Data: Many larval and adult organs/tissues expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, larval trachea. Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, adult ovary, adult male reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1636508_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of Nca. Gene sequence location is 3L:19985023..19990798.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2011_10
FB2012_01	Sequence features BKN28825 HFA11233
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 76D8-76D8   Limits computationally determined from genome sequence between P{lacW}l(3)L1243L1243&P{lacW}Mi-2j3D4 and P{PZ}eRF100103
Experimentally Determined Cytological Location
Cytogenetic map Notes References 76F-76F     (Teng, 1994.10.11) 76F-76F   (determined by in situ hybridisation)   (Teng et al., 1994)
Experimentally Determined Recombination Data
Location	3- (Teng, 1994.10.11)
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\Nca for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Evidence indicates that 5' UTR overlaps 5' UTR of downstream gene (CG7646); (based upon RE66104 )
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Nca-RA FBtr0074902  NM_176365   863   190 Nca-RB FBtr0302048  NM_001170007   993   190
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Nca-PA   FBpp0074671   21.9   190   5.01     NP_788543   AAF49082 Nca-PB   FBpp0291258   21.9   190   5.01     NP_001163478   ACZ94749
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • EF-Hand 1, calcium-binding site (IPR018247) EF-HAND 2 (IPR018249) Recoverin (IPR001125) Calcium-binding EF-hand (IPR002048) EF-hand-like domain (IPR011992) EF-hand (IPR018248)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA951796   AE014296 AAF49082   AE014296 ACZ94749   AY071612 AAL49234   BF486351   BI365292   BI483236   BI483249   BI564696   BI582469   BI586438   BI618051   BP549863   BP554039   BP554040   BP556561   BP556562   CO176806   CO266999   CO271965   CO274447   CO279374   CO286972   CO300196   CO301154   CO311001   CO314845   CO320254   CO321643   CO322014   CO327503   CO330289   EC057252   EC062707   EC063232   EC063794   EC067148   EC068712   EC081401   EC083052   EC084219   EC213509   EC221999   EC232604   EC234686   EC246342   EV584780   EV586134   EV589622   EV594788   GH800811   GH823859   GH830975   GH856187   GH874555   GH897880   GH898059   GH905563   GH921079   U15735 AAA62152
UniProtKB/Swiss-Prot	P42325
UniProtKB/TrEMBL
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0013303    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0013303 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed at stages throughout embryogenesis, during late larval stages, at stages throughout the pupal period, in stages of adults of both sexes. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0013303 expression level Developmental Stage   Expression Level embryo 00-02hr    2598 embryo 02-04hr    2728 embryo 04-06hr    2076 embryo 06-08hr    1979 embryo 08-10hr    2873 embryo 10-12hr    3144 embryo 12-14hr    2959 embryo 14-16hr    1130 embryo 16-18hr    1968 embryo 18-20hr    1170 embryo 20-22hr    1991 embryo 22-24hr    2779 larva L1    1156 larva L2    1090 larva L3 12hr old    1028 larva L3 puffstage 1-2    1286 larva L3 puffstage 3-6    1539 larva L3 puffstage 7-9    2548 white prepupae new    2356 white prepupae 12hr    2592 white prepupae 24hr    2723 pupae 2d postWPP    3610 pupae 3d postWPP    3323 pupae 4d postWPP    1109 adult male 01day    1746 adult male 05day    1459 adult male 30day    1074 adult female 01day    1046 adult female 05day    2495 adult female 30day    1963 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (2598) embryo 02-04hr  (2728) embryo 04-06hr  (2076) embryo 06-08hr  (1979) embryo 08-10hr  (2873) embryo 10-12hr  (3144) embryo 12-14hr  (2959) embryo 14-16hr  (1130) embryo 16-18hr  (1968) embryo 18-20hr  (1170) embryo 20-22hr  (1991) embryo 22-24hr  (2779) larva L1  (1156) larva L2  (1090) larva L3 12hr old  (1028) larva L3 puffstage 1-2  (1286) larva L3 puffstage 3-6  (1539) larva L3 puffstage 7-9  (2548) white prepupae new  (2356) white prepupae 12hr  (2592) white prepupae 24hr  (2723) pupae 2d postWPP  (3610) pupae 3d postWPP  (3323) pupae 4d postWPP  (1109) adult male 01day  (1746) adult male 05day  (1459) adult male 30day  (1074) adult female 01day  (1046) adult female 05day  (2495) adult female 30day  (1963) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (2598) embryo 02-04hr  (2728) embryo 04-06hr  (2076) embryo 06-08hr  (1979) embryo 08-10hr  (2873) embryo 10-12hr  (3144) embryo 12-14hr  (2959) embryo 14-16hr    1130 embryo 16-18hr  (1968) embryo 18-20hr    1170 embryo 20-22hr  (1991) embryo 22-24hr  (2779) larva L1    1156 larva L2    1090 larva L3 12hr old    1028 larva L3 puffstage 1-2    1286 larva L3 puffstage 3-6  (1539) larva L3 puffstage 7-9  (2548) white prepupae new  (2356) white prepupae 12hr  (2592) white prepupae 24hr  (2723) pupae 2d postWPP  (3610) pupae 3d postWPP  (3323) pupae 4d postWPP    1109 adult male 01day  (1746) adult male 05day  1459 adult male 30day    1074 adult female 01day    1046 adult female 05day  (2495) adult female 30day  (1963) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    2598 embryo 02-04hr    2728 embryo 04-06hr    2076 embryo 06-08hr    1979 embryo 08-10hr    2873 embryo 10-12hr    3144 embryo 12-14hr    2959 embryo 14-16hr    1130 embryo 16-18hr    1968 embryo 18-20hr    1170 embryo 20-22hr    1991 embryo 22-24hr    2779 larva L1    1156 larva L2    1090 larva L3 12hr old    1028 larva L3 puffstage 1-2    1286 larva L3 puffstage 3-6    1539 larva L3 puffstage 7-9    2548 white prepupae new    2356 white prepupae 12hr    2592 white prepupae 24hr    2723 pupae 2d postWPP    3610 pupae 3d postWPP    3323 pupae 4d postWPP    1109 adult male 01day    1746 adult male 05day    1459 adult male 30day    1074 adult female 01day    1046 adult female 05day    2495 adult female 30day    1963 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    2598 embryo 02-04hr    2728 embryo 04-06hr    2076 embryo 06-08hr    1979 embryo 08-10hr    2873 embryo 10-12hr    3144 embryo 12-14hr    2959 embryo 14-16hr    1130 embryo 16-18hr    1968 embryo 18-20hr    1170 embryo 20-22hr    1991 embryo 22-24hr    2779 larva L1    1156 larva L2    1090 larva L3 12hr old    1028 larva L3 puffstage 1-2    1286 larva L3 puffstage 3-6    1539 larva L3 puffstage 7-9    2548 white prepupae new    2356 white prepupae 12hr    2592 white prepupae 24hr    2723 pupae 2d postWPP    3610 pupae 3d postWPP    3323 pupae 4d postWPP    1109 adult male 01day    1746 adult male 05day    1459 adult male 30day    1074 adult female 01day    1046 adult female 05day    2495 adult female 30day    1963 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0013303 expression level Developmental Stage   Expression Level embryo 00-02hr    2598 embryo 02-04hr    2728 embryo 04-06hr    2076 embryo 06-08hr    1979 embryo 08-10hr    2873 embryo 10-12hr    3144 embryo 12-14hr    2959 embryo 14-16hr    1130 embryo 16-18hr    1968 embryo 18-20hr    1170 embryo 20-22hr    1991 embryo 22-24hr    2779 larva L1    1156 larva L2    1090 larva L3 12hr old    1028 larva L3 puffstage 1-2    1286 larva L3 puffstage 3-6    1539 larva L3 puffstage 7-9    2548 white prepupae new    2356 white prepupae 12hr    2592 white prepupae 24hr    2723 pupae 2d postWPP    3610 pupae 3d postWPP    3323 pupae 4d postWPP    1109 adult male 01day    1746 adult male 05day    1459 adult male 30day    1074 adult female 01day    1046 adult female 05day    2495 adult female 30day    1963 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (2598) embryo 02-04hr  (2728) embryo 04-06hr  (2076) embryo 06-08hr  (1979) embryo 08-10hr  (2873) embryo 10-12hr  (3144) embryo 12-14hr  (2959) embryo 14-16hr  (1130) embryo 16-18hr  (1968) embryo 18-20hr  (1170) embryo 20-22hr  (1991) embryo 22-24hr  (2779) larva L1  (1156) larva L2  (1090) larva L3 12hr old  (1028) larva L3 puffstage 1-2  (1286) larva L3 puffstage 3-6  (1539) larva L3 puffstage 7-9  (2548) white prepupae new  (2356) white prepupae 12hr  (2592) white prepupae 24hr  (2723) pupae 2d postWPP  (3610) pupae 3d postWPP  (3323) pupae 4d postWPP  (1109) adult male 01day  (1746) adult male 05day  (1459) adult male 30day  (1074) adult female 01day  (1046) adult female 05day  (2495) adult female 30day  (1963) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (2598) embryo 02-04hr  (2728) embryo 04-06hr  2076 embryo 06-08hr  1979 embryo 08-10hr  (2873) embryo 10-12hr  (3144) embryo 12-14hr  (2959) embryo 14-16hr    1130 embryo 16-18hr  1968 embryo 18-20hr    1170 embryo 20-22hr  1991 embryo 22-24hr  (2779) larva L1    1156 larva L2    1090 larva L3 12hr old    1028 larva L3 puffstage 1-2    1286 larva L3 puffstage 3-6  1539 larva L3 puffstage 7-9  (2548) white prepupae new  2356 white prepupae 12hr  (2592) white prepupae 24hr  (2723) pupae 2d postWPP  (3610) pupae 3d postWPP  (3323) pupae 4d postWPP    1109 adult male 01day  1746 adult male 05day  1459 adult male 30day    1074 adult female 01day    1046 adult female 05day  (2495) adult female 30day  1963 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    2598 embryo 02-04hr    2728 embryo 04-06hr    2076 embryo 06-08hr    1979 embryo 08-10hr    2873 embryo 10-12hr    3144 embryo 12-14hr    2959 embryo 14-16hr    1130 embryo 16-18hr    1968 embryo 18-20hr    1170 embryo 20-22hr    1991 embryo 22-24hr    2779 larva L1    1156 larva L2    1090 larva L3 12hr old    1028 larva L3 puffstage 1-2    1286 larva L3 puffstage 3-6    1539 larva L3 puffstage 7-9    2548 white prepupae new    2356 white prepupae 12hr    2592 white prepupae 24hr    2723 pupae 2d postWPP    3610 pupae 3d postWPP    3323 pupae 4d postWPP    1109 adult male 01day    1746 adult male 05day    1459 adult male 30day    1074 adult female 01day    1046 adult female 05day    2495 adult female 30day    1963 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    2598 embryo 02-04hr    2728 embryo 04-06hr    2076 embryo 06-08hr    1979 embryo 08-10hr    2873 embryo 10-12hr    3144 embryo 12-14hr    2959 embryo 14-16hr    1130 embryo 16-18hr    1968 embryo 18-20hr    1170 embryo 20-22hr    1991 embryo 22-24hr    2779 larva L1    1156 larva L2    1090 larva L3 12hr old    1028 larva L3 puffstage 1-2    1286 larva L3 puffstage 3-6    1539 larva L3 puffstage 7-9    2548 white prepupae new    2356 white prepupae 12hr    2592 white prepupae 24hr    2723 pupae 2d postWPP    3610 pupae 3d postWPP    3323 pupae 4d postWPP    1109 adult male 01day    1746 adult male 05day    1459 adult male 30day    1074 adult female 01day    1046 adult female 05day    2495 adult female 30day    1963 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0013303    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0013303 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Many larval and adult organs/tissues expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, larval trachea. Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, adult ovary, adult male reproductive system, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0013303 expression level Tissue   Expression Level Larval Central Nervous System    450.85 Larval Midgut    123.3 Larval Hindgut    333.6 Larval Malpighian Tubules    364.5 Larval Fat Body    304 Larval Salivary Gland    327.9 Larval Trachea    605.55 Larval Carcass    283.8 Adult Head    677.3 Adult Eye    1149.4 Adult Brain    1349.2 Adult Thoracic-Abdominal Ganglion    1595.4 Adult Crop    340.6 Adult Midgut    121.4 Adult Hindgut    251.5 Adult Malpighian Tubules    167.8 Adult Fat Body    143.8 Adult Salivary Gland    319.9 Adult Heart    271.425 Adult VirginFemale Spermatheca    62.4 Adult InseminatedFemale Spermatheca    72.9 Adult Ovary    376.9 Adult Testis    174.9 Adult Male Accessory Gland    233.5 Adult Carcass    205.4 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    450.85 Larval Midgut    123.3 Larval Hindgut    333.6 Larval Malpighian Tubules    364.5 Larval Fat Body    304 Larval Salivary Gland    327.9 Larval Trachea  (605.55) Larval Carcass    283.8 Adult Head  (677.3) Adult Eye  (1149.4) Adult Brain  (1349.2) Adult Thoracic-Abdominal Ganglion  (1595.4) Adult Crop    340.6 Adult Midgut    121.4 Adult Hindgut    251.5 Adult Malpighian Tubules    167.8 Adult Fat Body    143.8 Adult Salivary Gland    319.9 Adult Heart    271.425 Adult VirginFemale Spermatheca    62.4 Adult InseminatedFemale Spermatheca    72.9 Adult Ovary    376.9 Adult Testis    174.9 Adult Male Accessory Gland    233.5 Adult Carcass    205.4 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    450.85 Larval Midgut    123.3 Larval Hindgut    333.6 Larval Malpighian Tubules    364.5 Larval Fat Body    304 Larval Salivary Gland    327.9 Larval Trachea    605.55 Larval Carcass    283.8 Adult Head    677.3 Adult Eye  (1149.4) Adult Brain  (1349.2) Adult Thoracic-Abdominal Ganglion  (1595.4) Adult Crop    340.6 Adult Midgut    121.4 Adult Hindgut    251.5 Adult Malpighian Tubules    167.8 Adult Fat Body    143.8 Adult Salivary Gland    319.9 Adult Heart    271.425 Adult VirginFemale Spermatheca    62.4 Adult InseminatedFemale Spermatheca    72.9 Adult Ovary    376.9 Adult Testis    174.9 Adult Male Accessory Gland    233.5 Adult Carcass    205.4 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    450.85 Larval Midgut    123.3 Larval Hindgut    333.6 Larval Malpighian Tubules    364.5 Larval Fat Body    304 Larval Salivary Gland    327.9 Larval Trachea    605.55 Larval Carcass    283.8 Adult Head    677.3 Adult Eye    1149.4 Adult Brain    1349.2 Adult Thoracic-Abdominal Ganglion    1595.4 Adult Crop    340.6 Adult Midgut    121.4 Adult Hindgut    251.5 Adult Malpighian Tubules    167.8 Adult Fat Body    143.8 Adult Salivary Gland    319.9 Adult Heart    271.425 Adult VirginFemale Spermatheca    62.4 Adult InseminatedFemale Spermatheca    72.9 Adult Ovary    376.9 Adult Testis    174.9 Adult Male Accessory Gland    233.5 Adult Carcass    205.4 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0013303 expression level Tissue   Expression Level Larval Central Nervous System    450.85 Larval Midgut    123.3 Larval Hindgut    333.6 Larval Malpighian Tubules    364.5 Larval Fat Body    304 Larval Salivary Gland    327.9 Larval Trachea    605.55 Larval Carcass    283.8 Adult Head    677.3 Adult Eye    1149.4 Adult Brain    1349.2 Adult Thoracic-Abdominal Ganglion    1595.4 Adult Crop    340.6 Adult Midgut    121.4 Adult Hindgut    251.5 Adult Malpighian Tubules    167.8 Adult Fat Body    143.8 Adult Salivary Gland    319.9 Adult Heart    271.425 Adult VirginFemale Spermatheca    62.4 Adult InseminatedFemale Spermatheca    72.9 Adult Ovary    376.9 Adult Testis    174.9 Adult Male Accessory Gland    233.5 Adult Carcass    205.4 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    450.85 Larval Midgut    123.3 Larval Hindgut    333.6 Larval Malpighian Tubules    364.5 Larval Fat Body    304 Larval Salivary Gland    327.9 Larval Trachea  605.55 Larval Carcass    283.8 Adult Head  677.3 Adult Eye  (1149.4) Adult Brain  (1349.2) Adult Thoracic-Abdominal Ganglion  (1595.4) Adult Crop    340.6 Adult Midgut    121.4 Adult Hindgut    251.5 Adult Malpighian Tubules    167.8 Adult Fat Body    143.8 Adult Salivary Gland    319.9 Adult Heart    271.425 Adult VirginFemale Spermatheca    62.4 Adult InseminatedFemale Spermatheca    72.9 Adult Ovary    376.9 Adult Testis    174.9 Adult Male Accessory Gland    233.5 Adult Carcass    205.4 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    450.85 Larval Midgut    123.3 Larval Hindgut    333.6 Larval Malpighian Tubules    364.5 Larval Fat Body    304 Larval Salivary Gland    327.9 Larval Trachea    605.55 Larval Carcass    283.8 Adult Head    677.3 Adult Eye  1149.4 Adult Brain  1349.2 Adult Thoracic-Abdominal Ganglion  1595.4 Adult Crop    340.6 Adult Midgut    121.4 Adult Hindgut    251.5 Adult Malpighian Tubules    167.8 Adult Fat Body    143.8 Adult Salivary Gland    319.9 Adult Heart    271.425 Adult VirginFemale Spermatheca    62.4 Adult InseminatedFemale Spermatheca    72.9 Adult Ovary    376.9 Adult Testis    174.9 Adult Male Accessory Gland    233.5 Adult Carcass    205.4 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    450.85 Larval Midgut    123.3 Larval Hindgut    333.6 Larval Malpighian Tubules    364.5 Larval Fat Body    304 Larval Salivary Gland    327.9 Larval Trachea    605.55 Larval Carcass    283.8 Adult Head    677.3 Adult Eye    1149.4 Adult Brain    1349.2 Adult Thoracic-Abdominal Ganglion    1595.4 Adult Crop    340.6 Adult Midgut    121.4 Adult Hindgut    251.5 Adult Malpighian Tubules    167.8 Adult Fat Body    143.8 Adult Salivary Gland    319.9 Adult Heart    271.425 Adult VirginFemale Spermatheca    62.4 Adult InseminatedFemale Spermatheca    72.9 Adult Ovary    376.9 Adult Testis    174.9 Adult Male Accessory Gland    233.5 Adult Carcass    205.4 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    677.3   NA  Eye    1149.4   NA  Brain    1349.2   450.85  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    1595.4   NA  Crop    340.6   123.3  Midgut    121.4   333.6  Hindgut    251.5   364.5  Malpighian Tubules    167.8   304  Fat Body    143.8   327.9  Salivary Gland    319.9   NA  Heart    271.425   605.55  Trachea    NA   NA  VirginFemale Spermatheca    62.4   NA  InseminatedFemale Spermatheca    72.9   NA  Ovary    376.9   NA  Testis    174.9   NA  Male Accessory Gland    233.5   283.8  Carcass    205.4 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_05
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0013303 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG7641-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Phenotype manifest in Allele
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of Nca Class Mutagen Stocks Known lesion NcaA502 1 --
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Nca Class Mutagen Stocks Known lesion NcaJF03398 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes NcaKK108825 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes NcaGD10477 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD10477} NA P{KK108825} NA P{TRiP.JF03398} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions PBac{5HPw+}NcaA502 NA
Gene Ontology: Function, Process & Cellular Component ( 2 unique terms )
Terms Based on Experimental Evidence ( 1 term )
Molecular Function
CV term Evidence References
calcium ion binding inferred from direct assay (Teng et al., 1994)
Biological Process ( 0 terms)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function
CV term Evidence References
calcium ion binding inferred from sequence or structural similarity with UniProtKB:Q06389 (FlyBase, 1992-) non-traceable author statement (Teng, 1994.10.11, Swiss-Prot Project Members, 1995.6.1)
Biological Process
CV term Evidence References
negative regulation of phosphorylation non-traceable author statement (Swiss-Prot Project Members, 1995.6.1)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Nca allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 65453 DroID - A comprehensive database of gene and protein interactions. • FBgn0013303 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 40186
Orthologs
Genome-wide drosophilid orthologs	Dana\GF23611 Dere\GG16076 Dgri\GH14390 Dmoj\GI11334 Dper\GL11894 Dsec\GM19732 Dsim\GD14847 Dvir\GJ11590 Dwil\GK20284 Dyak\GE19642
Curated drosophilid orthologs
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL004269-PA Aedes aegypti (mosquito) AGAP007247-PC Anopheles gambiae (mosquito) XP_392256.2 Apis mellifera (honey bee) XP_001948223.1 Acyrthosiphon pisum (pea aphid) At4g16350.1 Arabidopsis thaliana (wall cress) At5g24270.1 Arabidopsis thaliana (wall cress) 84696 Batrachochytrium dendrobatidis (chytrid fungus) 116053 Branchiostoma floridae (lancelet) BGIBMGA012282-PA Bombyx mori (silk worm) ENSBTAP00000005577 Bos taurus (bovine) CAL0004401 Candida albicans (a form of yeast) ENSCAFP00000005084 Canis familiaris (dog) ENSCINP00000006589 Ciona intestinalis (sea squirt) cn07267 Cryptococcus neoformans (yeast-like fungus) CPIJ008222 Culex pipens (mosquito) ENSCPOP00000018852 Cavia porcellus (guinea pig) ENSCSAVP00000013597 Ciona savignyi (sedentary tunicate) 153835 Capitella spl (polychaete worm) DDB0231007 Dictyostelium discoideum (amoeba) DEHA2E13728g Debaryomyces Hansenii (yeast) 65663 Daphnia pulex (daphnia) ENSDARP00000012565 Danio rerio (zebra fish) ENSECAP00000004344 Equus caballus (horse) ENSGACP00000004816 Gymnopilus aculeatus (mushroom) ENSGACP00000012218 Gymnopilus aculeatus (mushroom) ENSGALP00000036116 Gallus gallus (chicken) 156757 Hypsipyla robusta (cedar shoot borer) ENSP00000310749 Homo sapiens (human) ISCW019379-PA Ixodes scapularis (deer tick) 180935 Lottia gigantea (owl limpet) 35117 Monocosta brevicollis (choanoflagellate) ENSMODP00000018469 Monodelphis domestica (gray opossum) ENSMMUP00000036763 Macaca mulatta (rhesus monkey) ENSMUSP00000087611 Mus musculus (house mouse) 86632 Nematostella vectensis (starlet anemone) XP_001608176.1 Nasonia vitripennis (wasp) ENSOANP00000021527 Ornithorynchus anatinus (platypus) ENSORLP00000025856 Oryzias latipes (japanese killifish) PHUM001640-PA Pediculus humanus (human body louse) ENSPPYP00000014129 Pongo pygmaeus (orangutan) 137867 Phytophthora sojae (root rot pathogen) 660678 Populus trichocarpa (black cottonwood) 836951 Populus trichocarpa (black cottonwood) ENSPTRP00000020029 Pan troglodytes (chimpanzee) ENSRNOP00000007374 Rattus norvegicus (norway rat) 130174 Sorghum bicolor (sorghum) 149463 Sorghum bicolor (sorghum) Smp_085650 Schistosoma mansoni (trematode parasite) SPAC18B11.04 Schizosaccharomyces pombe (fission yeast) XP_783112.2 Strongylocentrotus purpuratus (purple sea urchin) 28010 Trichoplax adhaerens (metazoa) XP_969368.1 Tribolium castaneum (red flour beetle) ENSTNIP00000016300 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000030747 Takifugu rubripes (pufferfish Takifugu) ENSTRUP00000032137 Takifugu rubripes (pufferfish Takifugu) 82838.m00150 Trichomonas vaginalis (parasitic flagellated protozoan) ENSXETP00000007606 Xenopus tropicalis (frog) YALI0E15180g Yarrowia lipolytica (nonconventional yeast) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV10860 LH23282 ISCW024870 ISCW019379 FBgn0240423 FBgn0236979 FBgn0222281 FBgn0198847 FBgn0186520 FBgn0174632 JGI_V11_65663 FBgn0149502 FBgn0134095 FBgn0121866 FBgn0108311 FBgn0100605 CPIJ008222 BGIBMGA012282 ACYPI007547 GB18902 AGAP007247 AAEL004269 PB20189 PHUM538620 GLEAN_10475
Stocks & Reagents
Stocks Listed in FlyBase ( 3 )
Bloomington	29461 y1 v1; P{TRiP.JF03398}attP2 16130 y1 w1118; PBac{5HPw+}NcaA502
VDRC	v100625 P{KK108825}VIE-260B
Genomic Clones ( 2 )
	BACR10L01 BACR13N10 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 53 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RE66104
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT20626 LD32517 RE50554 RE66117 RH20584 RH26385 RH48570 RH62085
Other clones	331 12758 20071 37095 57422 57984 61047 64774 74088 100502 178182 CK01.13B.D1 CK01.81D.G12 Dmel_dig_001111_0687_2844 Dmel_dig_014803_0655_1808 Dmel_neb_013784_0425_1044 Dmel_neb_014680_0608_2304 EK051045 EK064445 EK105327 EK114149 EK134163 EK148161 EK177561 EK180247 EK186103 EK187016 EK223132 EK238004 EK283134 EK294907 EP07407 FGM103H09 FGM227F08 FGM304C03 RP003055383 RP003089935 RP003104783 RP003279282 RP003308340 RP003329205 RP003357560 RP003641311 RP003666490
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0013303 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40186
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
	Identification and characterisation of Nca. Nca is present in synapses of the brain and thoracic ganglia. Nca product is a calcium-binding protein. (Teng et al., 1994)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_176365 NM_001170007 RefSeq (Proteins) • NP_788543 NP_001163478 DDBJ / EMBL / GenBank • AAA62152 AAF49082 AAL49234 ACZ94749 AY071612 BI483236 U15735 Entrez Gene - A searchable database of RefSeq genes. • 40186 UniProtKB/Swiss-Prot • P42325
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • EF-Hand 1, calcium-binding site (IPR018247) EF-HAND 2 (IPR018249) Recoverin (IPR001125) Calcium-binding EF-hand (IPR002048) EF-hand-like domain (IPR011992) EF-hand (IPR018248)
Linkouts
	BioGRID - A database of protein and genetic interactions • 65453 DroID - A comprehensive database of gene and protein interactions. • FBgn0013303 DRSC - Results from RNAi screens. • FBgn0013303 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0013303 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG7641-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0013303 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40186 InParanoid A subset of ortholog calls from InParanoid. • AAEL004269-PA Aedes aegypti (mosquito) AGAP007247-PC Anopheles gambiae (mosquito) XP_392256.2 Apis mellifera (honey bee) XP_001948223.1 Acyrthosiphon pisum (pea aphid) At4g16350.1 Arabidopsis thaliana (wall cress) At5g24270.1 Arabidopsis thaliana (wall cress) 84696 Batrachochytrium dendrobatidis (chytrid fungus) 116053 Branchiostoma floridae (lancelet) BGIBMGA012282-PA Bombyx mori (silk worm) ENSBTAP00000005577 Bos taurus (bovine) CAL0004401 Candida albicans (a form of yeast) ENSCAFP00000005084 Canis familiaris (dog) ENSCINP00000006589 Ciona intestinalis (sea squirt) cn07267 Cryptococcus neoformans (yeast-like fungus) CPIJ008222 Culex pipens (mosquito) ENSCPOP00000018852 Cavia porcellus (guinea pig) ENSCSAVP00000013597 Ciona savignyi (sedentary tunicate) 153835 Capitella spl (polychaete worm) DDB0231007 Dictyostelium discoideum (amoeba) DEHA2E13728g Debaryomyces Hansenii (yeast) 65663 Daphnia pulex (daphnia) ENSDARP00000012565 Danio rerio (zebra fish) ENSECAP00000004344 Equus caballus (horse) ENSGACP00000004816 Gymnopilus aculeatus (mushroom) ENSGACP00000012218 Gymnopilus aculeatus (mushroom) ENSGALP00000036116 Gallus gallus (chicken) 156757 Hypsipyla robusta (cedar shoot borer) ENSP00000310749 Homo sapiens (human) ISCW019379-PA Ixodes scapularis (deer tick) 180935 Lottia gigantea (owl limpet) 35117 Monocosta brevicollis (choanoflagellate) ENSMODP00000018469 Monodelphis domestica (gray opossum) ENSMMUP00000036763 Macaca mulatta (rhesus monkey) ENSMUSP00000087611 Mus musculus (house mouse) 86632 Nematostella vectensis (starlet anemone) XP_001608176.1 Nasonia vitripennis (wasp) ENSOANP00000021527 Ornithorynchus anatinus (platypus) ENSORLP00000025856 Oryzias latipes (japanese killifish) PHUM001640-PA Pediculus humanus (human body louse) ENSPPYP00000014129 Pongo pygmaeus (orangutan) 137867 Phytophthora sojae (root rot pathogen) 660678 Populus trichocarpa (black cottonwood) 836951 Populus trichocarpa (black cottonwood) ENSPTRP00000020029 Pan troglodytes (chimpanzee) ENSRNOP00000007374 Rattus norvegicus (norway rat) 130174 Sorghum bicolor (sorghum) 149463 Sorghum bicolor (sorghum) Smp_085650 Schistosoma mansoni (trematode parasite) SPAC18B11.04 Schizosaccharomyces pombe (fission yeast) XP_783112.2 Strongylocentrotus purpuratus (purple sea urchin) 28010 Trichoplax adhaerens (metazoa) XP_969368.1 Tribolium castaneum (red flour beetle) ENSTNIP00000016300 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000030747 Takifugu rubripes (pufferfish Takifugu) ENSTRUP00000032137 Takifugu rubripes (pufferfish Takifugu) 82838.m00150 Trichomonas vaginalis (parasitic flagellated protozoan) ENSXETP00000007606 Xenopus tropicalis (frog) YALI0E15180g Yarrowia lipolytica (nonconventional yeast) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 40186 modMine - Data generated by the modENCODE project. • FBgn0013303 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV10860 LH23282 ISCW024870 ISCW019379 FBgn0240423 FBgn0236979 FBgn0222281 FBgn0198847 FBgn0186520 FBgn0174632 JGI_V11_65663 FBgn0149502 FBgn0134095 FBgn0121866 FBgn0108311 FBgn0100605 CPIJ008222 BGIBMGA012282 ACYPI007547 GB18902 AGAP007247 AAEL004269 PB20189 PHUM538620 GLEAN_10475
Synonyms & Secondary IDs ( 6 )
Reported As
Symbol Synonym	CG7641 (Keleman et al., 2009.8.5, Perkins et al., 2009) nca (Teng, 1994.10.11, Faurobert et al., 1996, Teng et al., 1994, Polevoy et al., 2009) Nca   Ncalc (Zeng et al., 2000)
Name Synonym	neurocalcin (Braunewell and Gundelfinger, 1999, Teng et al., 1994, Diao et al., 2009) Neurocalcin
Secondary FlyBase IDs
	FBgn0013306
References ( 20 )
Research paper	Diao et al., 2009, Mol. Cell. Neurosci. 42(1): 33--44 Fast inactivation of Shal (K(v)4) K+ channels is regulated by the novel interactor SKIP3 in Drosophila neurons. [FBrf0208394] Polevoy et al., 2009, J. Cell Biol. 187(6): 847--858 Dual roles for the Drosophila PI 4-kinase Four wheel drive in localizing Rab11 during cytokinesis. [FBrf0209515] Zeng et al., 2000, Nature 403(6771): 789--795 naked cuticle encodes an inducible antagonist of Wnt signalling. [FBrf0125452] Faurobert et al., 1996, J. Biol. Chem. 271(17): 10256--10262 Drosophila neurocalcin, a fatty acylated, Ca2+-binding protein that associates with membranes and inhibits in vitro phosphorylation of bovine rhodopsin. [FBrf0087096] Teng et al., 1994, J. Biol. Chem. 269(50): 31900--31907 A highly conserved homologue of bovine neurocalcin in Drosophila melanogaster is a Ca2+-binding protein expressed in neuronal tissues. [FBrf0076714]
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Dietzl et al., 2007, Nature 448(7150): Supplementary Table 1. [FBrf0202579] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Review	Braunewell and Gundelfinger, 1999, Cell Tissue Res. 295(1): 1--12 Intracellular neuronal calcium sensor proteins: a family of EF-hand calcium-binding proteins in search of a function. [FBrf0106018]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Perkins et al., 2009, Update to TRiP stock collection. Update to TRiP stock collection. [FBrf0208864] Berkeley Drosophila Genome Project, 2006.4.26, BDGP TI submission. BDGP TI submission. [FBrf0188739]
FlyBase analysis	FlyBase Curators, 2008, Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. [FBrf0202955] FlyBase, 1992-, FlyBase curation FlyBase curation. [FBrf0105495]
DNA/RNA sequence record	Teng, 1994.10.11, GenBank/EMBL/DDBJ: U15735 Drosophila melanogaster neurocalcin homolog DrosNCa (nca) mRNA, complete cds. [FBrf0121318]
Protein sequence record	Swiss-Prot Project Members, 1995.6.1, UniProtKB: P42325 NEUROCALCIN HOMOLOG. [FBrf0124026]
Computer file	BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]
Automatic genome annotation	FamiliarityBreedsContempt, 1999.11, [Annotations performed at the Celera Jamboreee.] [Annotations performed at the Celera Jamboreee.] [FBrf0126705]
Curated genome annotation	Milshina, 1999.11, [Annotations performed at the Celera Jamboreee.] [Annotations performed at the Celera Jamboreee.] [FBrf0126686]