Gene Dsim\g

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General Information

Symbol

Dsim\g

Species

D. simulans

Name

garnet

Annotation symbol

GD24518

Feature type

protein_coding_gene

FlyBase ID

FBgn0013882

Gene Model Status

Current

Stock availability

3 publicly available

Also Known As

Genomic Location

Chromosome (arm)

chrX_Mrandom_686

Recombination map

Cytogenetic map

Sequence location

chrX_Mrandom_686:1,241..3,866 [-]

Genomic Maps

Summary Information

Automatically generated summary

See sections below for more information

The gene garnet is referred to in FlyBase by the symbol Dsim\g (GD24518, FBgn0013882). It is a protein_coding_gene from Drosophila simulans. Its molecular function is unknown. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process: vesicle-mediated transport; intracellular protein transport. 2 alleles are reported. The phenotype of these alleles is annotated with: pigment cell. It has one annotated transcript and one annotated polypeptide. Protein features are: Armadillo-like helical; Armadillo-type fold; Bovine leukaemia virus receptor; Clathrin/coatomer adaptor, adaptin-like, N-terminal. Gene sequence location is chrX_Mrandom_686:1241..3866.

Recent Updates

Description

What does this section display?

This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).

What does this section not display?

This section does not currently display links that were removed or gene model changes.

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FB2013_03

FB2013_02

All updates

Click here to see a list of all updates to this record from FB2010_08 and on.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

1-44.8

(Sturtevant, 1921)

1-42.3

(Sturtevant, 1929)

1-42

(Coyne, 1996)

1-49.5

(Barker and Moth, 2001)

Left of (cM)

Right of (cM)

Notes

Gene Model & Products

Please see the GBrowse view of Dsim\g for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Comments on Gene Model

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

Dsim\g-RA

FBtr0224428

XM_002076964

1776

591

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

Dsim\g-PA

FBpp0222920

64.9

591

6.65

XP_002077000

EDX16594

Additional Polypeptide Data & Comments

Reported size (kDa)

Comments

External Data

Linkouts

Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

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Bovine leukaemia virus receptor (IPR010474)

Clathrin/coatomer adaptor, adaptin-like, N-terminal (IPR002553)

Armadillo-like helical (IPR011989)

Armadillo-type fold (IPR016024)

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Mapped Features

Mapped Features have been reorganized, please see this article for details.

Additional mapped features and mutations can be found on GBrowse or related reports.

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

Crossreferences

Expression Data

Transcript Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization (GO Cellular Component)

CV term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

Reference

See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

FlyAtlas Anatomy Microarray

modENCODE Anatomy RNA-Seq

modENCODE Development RNA-Seq

modENCODE Cell Lines RNA-Seq

modENCODE Treatments RNA-Seq

Expression Clusters

External Data & Images

Linkouts

Alleles & Phenotypes

Summary of Allele Phenotypes

Other Phenotypes

Allele

eye color defective

Dsim\g¹

visible | recessive

Dsim\g¹

Phenotype manifest in

Allele

pigment cell

Dsim\g¹

Classical Alleles ( 2 )

For All Classical Alleles Show

Allele of Dsim\g	Class	Mutagen	Stocks	Known lesion
Dsim\g¹		spontaneous	3	--
Dsim\g⁸			0	--

Alleles Carried on Transgenic Constructs ( 0 )

For All Alleles Carried on Transgenic Constructs Show

Allele of Dsim\g	Class	Mutagen	Stocks	Known lesion

Aneuploid Aberrations

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

Insertions

Type of insertions

Name

Expression data

Gene Ontology: Function, Process & Cellular Component ( 3 unique terms )

Terms Based on Experimental Evidence ( 0 terms )

Terms Based on Predictions or Assertions ( 3 terms )

Molecular Function ( 0 terms)

Biological Process

CV term

Evidence

References

intracellular protein transport

inferred from electronic annotation with InterPro:IPR002553

(FlyBase Curators et al., 2004-)

vesicle-mediated transport

inferred from electronic annotation with InterPro:IPR002553

(FlyBase Curators et al., 2004-)

Cellular Component

CV term

Evidence

References

membrane coat

inferred from electronic annotation with InterPro:IPR002553

(FlyBase Curators et al., 2004-)

Sequence Ontology: Class of Gene

gene

nuclear_gene

(Drosophila 12 Genomes Consortium, 2008)

protein_coding_gene

(Drosophila 12 Genomes Consortium, 2008)

Interactions & Pathways

Summary of Physical Interactions

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

Dsim\g allele

Gene

References

External Data

Linkouts

Orthologs

OrthoDB Orthologs (1) - based on analysis using Dmel annotation version 5.41

OrthoDB Ortholog Groups

OrthoDB orthology group searches

(Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288)

Drosophila inclusive ortholog search

EOG69PBHT

Dipteran inclusive ortholog search

EOG6KPTJW

Insect inclusive ortholog search

EOG6NP5ZB

Arthropod inclusive ortholog search

EOG69CNPJ

Metazoa inclusive ortholog search

EOG6TN3TS

Ortholog(s) in Drosophila melanogaster (EOG69PBHT)

Organism

Common Name

Gene

AAA Syntenic Ortholog

Multiple Dmel Genes in this Orthologous Group

Drosophila melanogaster

fruit fly

Dmel\g

Human Orthologs (0)

Gene

OMIM

HGNC

AAA Orthologs (0) based on analysis using Dmel annotation version 4.3

No orthologs identified

Stocks & Reagents

Stocks Listed in FlyBase ( 3 )

UC San Diego

14021-0251.089

g¹

14021-0251.092

g¹; cn¹; e¹; ey¹

14021-0251.209

g¹; cn¹; e¹; rpl¹

Genomic Clones ( 0 )

cDNA Clones ( 0 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones

Other clones

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi & Array Information

Linkouts

Antibody Information

Other Information

Discoverer

Etymology

Identification

Relationship to Other Genes

Source for database identity of

Source for database merge of

Additional comments

Comments on Gene Model: Merge with nearby annotation supported.

(FlyBase, 2008)

Other Comments

Mutant alleles were used in the analysis of the chromosomal complement of the D.simulans/D.sechellia hybrids.

(Coyne, 1996)

Genetic analysis of hybrids between D.sechellia and D.simulans show that each of the five major chromosome arms carries at least one gene affecting the ratio of the 6- and 7- tricosene isomers, with the right arm of the third chromosome having the largest effect.

(Coyne, 1996)

Marker gene used to physically map D.sechellia introgressions into D.simulans.

(Palopoli et al., 1996)

External Crossreferences & Linkouts

Sequence Crossreferences

RefSeq (Transcripts)

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