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Gene: Dmel\Rnp4F

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General Information
Symbol
Dmel\Rnp4F
Species
D. melanogaster
Name
RNA-binding protein 4F
Annotation Symbol
CG3312
Feature Type
protein_coding_gene
FlyBase ID
FBgn0014024
Gene Model Status
Current
Stock Availability
6 publicly available
Gene Snapshot
RNA-binding protein 4F (Rnp4F) encodes an essential evolutionarily-conserved RNA-binding protein. Rnp4F gene expression is post-transcriptionally regulated by interaction with a stable stem-loop structure in the 5'-UTR of the mRNA with trans-acting factors. [Date last reviewed: 2018-09-13]
Other Summaries
Also Known As
4f-rnp, rnp-4f
Key Links
Genomic Location
Cytogenetic map
4F5-4F5
Sequence location
X:5,318,928..5,322,696 [-]
Recombination map
1-11
Sequence
Get Decorated FASTA
Genomic Maps
Other Genome Views
The following external sites may use different assemblies or annotations than FlyBase.
NCBI Genome Data Viewer
UCSC Genome Browser
Ensembl Genome Browser
PopFly Genome Browser
GO Summary Ribbons
Families, Domains and Molecular Function
Gene Group Membership (FlyBase)
Protein Family (UniProt, Sequence Similarities)
-
Protein Domains/Motifs
InterPro
RNA recognition motif domain; HAT (Half-A-TPR) repeat; LSM-interacting domain; Tetratricopeptide-like helical domain superfamily; Nucleotide-binding alpha-beta plait domain superfamily; RNA-binding domain superfamily
Molecular Function (see GO section for details)
Experimental Evidence
-
Predictions / Assertions
mRNA binding; nucleic acid binding
Summaries
UniProt Contributed Function Data
May be involved in gene regulation during development. Binds RNA.
(UniProt, Q9W4D2)
Gene Model and Products
Number of Transcripts
4
Number of Unique Polypeptides
1

Please see the GBrowse view of Dmel\Rnp4F or the JBrowse view of Dmel\Rnp4F for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)
Isoform displayed:
Pfam protein domains
InterPro name
classification
start
end
Protein Domains (via SMART)
Isoform displayed:
SMART protein domains
InterPro name
classification
start
end
Comments on Gene Model
Gene model reviewed during 5.50
Low-frequency RNA-Seq exon junction(s) not annotated.
Gene model reviewed during 5.55
Sequence Ontology: Class of Gene
gene_with_edited_transcript
(Graveley et al., 2011)
nuclear_gene
protein_coding_gene
Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Assoc. CDS (aa)
Rnp4F-RA
FBtr0070752
NM_078492
3323
941
Rnp4F-RB
FBtr0070753
NM_206630
3242
941
Rnp4F-RD
FBtr0112876
NM_001103414
3146
941
Rnp4F-RF
FBtr0340477
NM_001103413
3116
941
Additional Transcript Data and Comments
Reported size (kB)
3.127 (longest cDNA)
(Petschek et al., 1997)
3.5, 3.2 (northern blot)
(Hess et al., 1996)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank
Rnp4F-PA
FBpp0070720
106.7
941
4.75
NP_511047
AAF46022
Rnp4F-PB
FBpp0089396
106.7
941
4.75
NP_996353
AAS65263
Rnp4F-PD
FBpp0111789
106.7
941
4.75
NP_001096884
ABW09340
Rnp4F-PF
FBpp0309418
106.7
941
4.75
NP_001096883
ABW09339
Polypeptides with Identical Sequences

The group(s) of polypeptides indicated below share identical sequence to each other.

941 aa isoforms: Rnp4F-PA, Rnp4F-PB, Rnp4F-PD, Rnp4F-PF
Additional Polypeptide Data and Comments
Reported size (kDa)
943, 639, 555 (aa); 124, 84, 70 (kD predicted)
(Petschek et al., 1997)
Comments
External Data
Crossreferences
InterPro - A database of protein families, domains and functional sites
Linkouts
Sequences Consistent with the Gene Model
Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\Rnp4F using the Feature Mapper tool.

External Data
Crossreferences
Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
Linkouts
Gene Ontology (9 terms)
Molecular Function (2 terms)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (2 terms)
CV Term
Evidence
References
mRNA binding
inferred from sequence or structural similarity
(Lasko, 2000)
nucleic acid binding
inferred from electronic annotation with InterPro:IPR000504
(assigned by InterPro )
(FlyBase Curators et al., 2004-)
Biological Process (4 terms)
Terms Based on Experimental Evidence (1 term)
CV Term
Evidence
References
central nervous system development
inferred from mutant phenotype
(Chen et al., 2007)
Terms Based on Predictions or Assertions (3 terms)
CV Term
Evidence
References
mRNA splicing, via spliceosome
inferred from biological aspect of ancestor with PANTHER:PTN000397856
(assigned by GO_Central )
(Gaudet et al., 2011)
regulation of alternative mRNA splicing, via spliceosome
inferred from biological aspect of ancestor with PANTHER:PTN000397856
(assigned by GO_Central )
(Gaudet et al., 2011)
RNA splicing
inferred from biological aspect of ancestor with PANTHER:PTN000397856
(assigned by GO_Central )
(Gaudet et al., 2011)
Cellular Component (3 terms)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (3 terms)
CV Term
Evidence
References
ASAP complex
inferred from biological aspect of ancestor with PANTHER:PTN000397856
(assigned by GO_Central )
(Gaudet et al., 2011)
cytoplasm
inferred from biological aspect of ancestor with PANTHER:PTN000397856
(assigned by GO_Central )
(Gaudet et al., 2011)
nucleoplasm
inferred from biological aspect of ancestor with PANTHER:PTN000397856
(assigned by GO_Central )
(Gaudet et al., 2011)
Expression Data
Expression Summary Ribbons
Colored tiles in ribbon indicate that expression data has been curated by FlyBase for that anatomical location. Colorless tiles indicate that there is no curated data for that location.
For complete stage-specific expression data, view the modENCODE Development RNA-Seq section under High-Throughput Expression below.
Transcript Expression
in situ
Stage
Tissue/Position (including subcellular localization)
Reference
embryonic stage 1 -- 3
organism

Comment: maternally deposited

(Fisher et al., 2012)
embryonic stage 1 -- 4
organism | ubiquitous
(Chen et al., 2007)
embryonic stage 4
pole cell
(Hess et al., 1996)
embryonic stage 4 -- 16
(Hess et al., 1996)
embryonic stage 6
cephalic furrow
(Chen et al., 2007)
mesoderm
(Chen et al., 2007)
embryonic stage 7 -- 8
organism | ubiquitous
(Fisher et al., 2012)
embryonic stage 9 -- 10
anterior endoderm
(Fisher et al., 2012)
central brain primordium
(Fisher et al., 2012)
posterior endoderm
(Fisher et al., 2012)
ventral nerve cord primordium
(Fisher et al., 2012)
germ band
(Chen et al., 2007)
amnioproctodeal invagination
(Chen et al., 2007)
embryonic stage 10
stomodeum
(Hess et al., 1996)
proctodeum
(Hess et al., 1996)
embryonic stage 11 -- 12
anterior midgut primordium
(Fisher et al., 2012)
central brain primordium
(Fisher et al., 2012)
posterior midgut primordium
(Fisher et al., 2012)
ventral nerve cord primordium
(Fisher et al., 2012)
embryonic stage 13
presumptive embryonic/larval central nervous system
(Hess et al., 1996)
embryonic stage 13 -- 16
embryonic brain
(Fisher et al., 2012)
embryonic/larval midgut
(Fisher et al., 2012)
embryonic/larval nervous system
(Fisher et al., 2012)
germline cell
(Fisher et al., 2012)
gonad
(Fisher et al., 2012)
ventral nerve cord
(Fisher et al., 2012)
embryonic stage 14
ventral nerve cord | dorsal | segmentally repeated
(Hess et al., 1996)
embryonic/larval brain
(Chen et al., 2007)
ventral nerve cord | dorsal
(Chen et al., 2007)
embryonic/larval gut
(Chen et al., 2007)
embryonic stage 14 -- 16
embryonic/larval foregut
(Hess et al., 1996)
ventral nerve cord commissure
(Hess et al., 1996)
embryonic/larval hindgut
(Hess et al., 1996)
epidermis
(Hess et al., 1996)
longitudinal connective
(Hess et al., 1996)
muscle system | restricted
(Hess et al., 1996)
oogenesis stage S6 -- S14
(Hess et al., 1996)
nurse cell
(Hess et al., 1996)
oogenesis stage S10A -- S14
oocyte
(Hess et al., 1996)
microinjection
Stage
Tissue/Position (including subcellular localization)
Reference
embryonic stage
(Petschek et al., 1997)
pupal stage
(Petschek et al., 1997)
adult stage
adult head
(Petschek et al., 1997)
northern blot
Stage
Tissue/Position (including subcellular localization)
Reference
embryonic stage & larval stage & adult stage
(Hess et al., 1996)
Additional Descriptive Data
The relative proportions of the long and short Rnp4F, which differ with respect to splicing of an untranslated upstream exon, change significiantly over the course of embryogenesis.
(Chen et al., 2007)
Marker for
 
Subcellular Localization
CV Term
Polypeptide Expression
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools

GBrowse - Visual display of RNA-Seq signals

View Dmel\Rnp4F in GBrowse 2
RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
Bulk Downloads
RNA-Seq RPKM values for all genes
Reference
See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
Developmental Proteome: Life Cycle
Developmental Proteome: Embryogenesis
External Data and Images
Linkouts
BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
Flygut - An atlas of the Drosophila adult midgut
Images
FlyExpress - Embryonic expression images (BDGP data)
  • Stages(s) 1-3
  • Stages(s) 7-8
  • Stages(s) 9-10
  • Stages(s) 11-12
  • Stages(s) 13-16
FlyBase Wiki
Image Based Resources
Alleles, Insertions, and Transgenic Constructs
Classical and Insertion Alleles ( 1 )
For All Classical and Insertion Alleles Show
 
Allele of Rnp4F
Class
Mutagen
Associated Insertion
Stocks
Known lesion
Rnp4F532
    0
    --
    Other relevant insertions
    Transgenic Constructs ( 8 )
    Deletions and Duplications ( 3 )
    Phenotypes
    For more details about a specific phenotype click on the relevant allele symbol.
    Lethality
    Allele
    lethal | recessive
    viable, with Dcr-2UAS.cDa, Scer\GAL4elav.PLu
    viable, with Scer\GAL4Mef2.PR
    viable, with Scer\GAL4pnr-MD237
    viable, with Scer\GAL4tin.CΔ4
    Other Phenotypes
    Allele
    wild-type
    Phenotype manifest in
    Allele
    Orthologs
    Downloads
    Download All DIOPT Orthologs
    Download All OrthoDB Orthologs
    Human Orthologs (via DIOPT v7.1)
    Homo sapiens (Human) (3)
    Species\Gene Symbol
    Score
    Best Score
    Best Reverse Score
    Source
    Compara
    eggNOG
    Hieranoid
    Homologene
    Inparanoid
    Isobase
    OMA
    OrthoDB
    OrthoFinder
    OrthoInspector
    orthoMCL
    Panther
    Phylome
    RoundUp
    TreeFam
    ZFIN
    Alignment
    Complementation?
    Transgene?
    Hsap\SART3
    11 of 15
    Yes
    Yes
    Hsap\RBM23
    1 of 15
    No
    No
    Hsap\RNPS1
    1 of 15
    No
    No
    Model Organism Orthologs (via DIOPT v7.1)
    Mus musculus (laboratory mouse) (3)
    Species\Gene Symbol
    Score
    Best Score
    Best Reverse Score
    Source
    Compara
    eggNOG
    Hieranoid
    Homologene
    Inparanoid
    Isobase
    OMA
    OrthoDB
    OrthoFinder
    OrthoInspector
    orthoMCL
    Panther
    Phylome
    RoundUp
    TreeFam
    ZFIN
    Alignment
    Complementation?
    Transgene?
    Mmus\Sart3
    10 of 15
    Yes
    Yes
    Mmus\Rnps1
    1 of 15
    No
    No
    Mmus\Srsf7
    1 of 15
    No
    No
    Rattus norvegicus (Norway rat) (2)
    Rnor\Sart3
    10 of 13
    Yes
    Yes
    Rnor\Rnps1
    1 of 13
    No
    No
    Xenopus tropicalis (Western clawed frog) (1)
    Xtro\sart3
    4 of 12
    Yes
    Yes
    Danio rerio (Zebrafish) (3)
    Drer\sart3
    9 of 15
    Yes
    Yes
    Drer\LOC103909923
    1 of 15
    No
    No
    Drer\rnps1
    1 of 15
    No
    No
    Caenorhabditis elegans (Nematode, roundworm) (2)
    Cele\sart-3
    7 of 15
    Yes
    Yes
    Cele\rnp-5
    1 of 15
    No
    No
    Arabidopsis thaliana (thale-cress) (3)
    Atha\EMB140
    2 of 9
    Yes
    Yes
    Atha\AT1G79100
    1 of 9
    No
    No
    Atha\SR45
    1 of 9
    No
    No
    Saccharomyces cerevisiae (Brewer's yeast) (2)
    Scer\PRP24
    3 of 15
    Yes
    Yes
    Scer\NOP13
    1 of 15
    No
    No
    Schizosaccharomyces pombe (Fission yeast) (3)
    Spom\SPBC1861.04c
    5 of 12
    Yes
    Yes
    Spom\rnp24
    1 of 12
    No
    Yes
    Spom\SPBC13G1.14c
    1 of 12
    No
    No
    Orthologs in Drosophila Species (via OrthoDB v9.1) ( EOG09190377 )
    Organism
    Common Name
    Gene
    AAA Syntenic Ortholog
    Multiple Dmel Genes in this Orthologous Group
    Drosophila melanogaster
    fruit fly
    Dmel\Rnp4F
    Drosophila suzukii
    Spotted wing Drosophila
    Dsuz\DS10_00006951
    Drosophila simulans
    Dsim\GD27847
    Drosophila sechellia
    Dsec\GM12648
    Drosophila erecta
    Dere\GG18501
    Drosophila yakuba
    Dyak\GE16818
    Drosophila ananassae
    Dana\GF20948
    Drosophila pseudoobscura pseudoobscura
    Dpse\GA17297
    Drosophila persimilis
    Dper\GL14328
    Drosophila willistoni
    Dwil\GK16926
    Drosophila virilis
    Dvir\GJ16573
    Drosophila mojavensis
    Dmoj\GI11056
    Drosophila grimshawi
    Dgri\GH24362
    Drosophila grimshawi
    Dgri\GH23233
    Drosophila grimshawi
    Dgri\GH10308
    Drosophila grimshawi
    Dgri\GH24363
    Orthologs in non-Drosophila Dipterans (via OrthoDB v9.1) ( EOG091501DY )
    Organism
    Common Name
    Gene
    Multiple Dmel Genes in this Orthologous Group
    Musca domestica
    House fly
    Mdoa\17024249
    Glossina morsitans
    Tsetse fly
    Gmor\GMOY006857
    Lucilia cuprina
    Australian sheep blowfly
    Lcup\FF38_08581
    Mayetiola destructor
    Hessian fly
    Mdes\Mdes012883
    Aedes aegypti
    Yellow fever mosquito
    Aaeg\AAEL018229
    Anopheles darlingi
    American malaria mosquito
    Adar\ADAC004995
    Anopheles gambiae
    Malaria mosquito
    Agam\AGAP002959
    Culex quinquefasciatus
    Southern house mosquito
    Cqui\CPIJ015478
    Orthologs in non-Dipteran Insects (via OrthoDB v9.1) ( EOG090W02PT )
    Organism
    Common Name
    Gene
    Multiple Dmel Genes in this Orthologous Group
    Bombyx mori
    Silkmoth
    Bmor\BGIBMGA012967
    Danaus plexippus
    Monarch butterfly
    Dple\DPOGS207025-PA
    Heliconius melpomene
    Postman butterfly
    Hmel\HMEL016095
    Apis florea
    Little honeybee
    Aflo\2641475940
    Apis mellifera
    Western honey bee
    Amel\Rnp4F
    Bombus impatiens
    Common eastern bumble bee
    Bimp\BIMP18771
    Bombus terrestris
    Buff-tailed bumblebee
    Bter\15203519
    Linepithema humile
    Argentine ant
    Lhum\LH10142
    Megachile rotundata
    Alfalfa leafcutting bee
    Mrot\MROTU:001992
    Nasonia vitripennis
    Parasitic wasp
    Nvit\Nasvi2EG015850
    Dendroctonus ponderosae
    Mountain pine beetle
    Dpod\YQE_04295
    Tribolium castaneum
    Red flour beetle
    Tcas\TC009182
    Pediculus humanus
    Human body louse
    Phum\PHUM002140
    Acyrthosiphon pisum
    Pea aphid
    Apim\ACYPI083327
    Acyrthosiphon pisum
    Pea aphid
    Apim\ACYPI002883
    Zootermopsis nevadensis
    Nevada dampwood termite
    Znev\Znev_03929
    Orthologs in non-Insect Arthropods (via OrthoDB v9.1) ( EOG090X02N1 )
    Organism
    Common Name
    Gene
    Multiple Dmel Genes in this Orthologous Group
    Strigamia maritima
    European centipede
    Smar\SMAR003818
    Ixodes scapularis
    Black-legged tick
    Isca\ISCW007450
    Ixodes scapularis
    Black-legged tick
    Isca\ISCW007451
    Stegodyphus mimosarum
    African social velvet spider
    Smim\KFM73371.1
    Stegodyphus mimosarum
    African social velvet spider
    Smim\KFM73372.1
    Tetranychus urticae
    Two-spotted spider mite
    Turt\tetur32g00240
    Daphnia pulex
    Water flea
    Dpux\DAPPUDRAFT_302363
    Orthologs in non-Arthropod Metazoa (via OrthoDB v9.1) ( EOG091G041L )
    Organism
    Common Name
    Gene
    Multiple Dmel Genes in this Orthologous Group
    Strongylocentrotus purpuratus
    Purple sea urchin
    Spur\SPU_014357gn
    Strongylocentrotus purpuratus
    Purple sea urchin
    Spur\SPU_005643gn
    Strongylocentrotus purpuratus
    Purple sea urchin
    Spur\Sp-Sart3
    Ciona intestinalis
    Vase tunicate
    Cint\ENSCING00000009762
    Gallus gallus
    Domestic chicken
    Ggal\SART3
    Human Disease Model Data
    FlyBase Human Disease Model Reports
      Alleles Reported to Model Human Disease (Disease Ontology)
      Download
      Models ( 0 )
      Allele
      Disease
      Evidence
      References
      Interactions ( 0 )
      Allele
      Disease
      Interaction
      References
      Comments ( 0 )
       
      Human Orthologs (via DIOPT v7.1)
      Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
      Homo sapiens (Human)
      Gene name
      Score
      OMIM
      OMIM Phenotype
      Complementation?
      Transgene?
      SART3; spliceosome associated factor 3, U4/U6 recycling protein
      11 of 15
      611684
        Functional Complementation Data
        Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
        Interactions
        Summary of Physical Interactions
        esyN Network Diagram
        Show neighbor-neighbor interactions:
        Select Layout:
        Legend:
        Protein
        RNA
        Selected Interactor(s)
        Interactions Browser
        View in Interactions Browser
        Please look at the Interaction Group reports for full details of the physical interactions
        protein-protein
        Interacting group
        Assay
        References
        Rnp4F - CG17768
        experimental knowledge based
        (Guruharsha et al., 2011)
        Rnp4F - CG9344
        experimental knowledge based
        (Guruharsha et al., 2011)
        Rnp4F - LSm3
        experimental knowledge based
        (Guruharsha et al., 2011)
        Summary of Genetic Interactions
        esyN Network Diagram
        Starting gene(s)
        Interaction type
        Interacting gene(s)
        Reference
        Starting gene(s)
        Interaction type
        Interacting gene(s)
        Reference
        External Data
        Linkouts
        DroID - A comprehensive database of gene and protein interactions.
        InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.
        Pathways
        Gene Group - Pathway Membership (FlyBase)
        External Data
        Linkouts
        Genomic Location and Detailed Mapping Data
        Chromosome (arm)
        X
        Recombination map
        1-11
        Cytogenetic map
        4F5-4F5
        Sequence location
        X:5,318,928..5,322,696 [-]
        FlyBase Computed Cytological Location
        Cytogenetic map
        Evidence for location
        4F5-4F5
        Limits computationally determined from genome sequence between P{EP}EP425 and P{EP}CG3249EP1400
        Experimentally Determined Cytological Location
        Cytogenetic map
        Notes
        References
        4F1-4F2
        (determined by in situ hybridisation)
        (Hess et al., 1996, Petschek et al., 1996, Petscheck, 1995)
        Experimentally Determined Recombination Data
        Location
        1-11
        (FlyBase, 2016)
        1-13.4
        (Comeron et al., 2012)
        Left of (cM)
        Right of (cM)
        Notes
        Stocks and Reagents
        Stocks (6)
        Genomic Clones (15)
         

        Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

        cDNA Clones (47)
         

        Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

        cDNA clones, fully sequences
        BDGP DGC clones
        Other clones
        Drosophila Genomics Resource Center cDNA clones

        For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

        cDNA Clones, End Sequenced (ESTs)
        BDGP DGC clones
        Other clones
        RNAi and Array Information
        Linkouts
        DRSC - Results frm RNAi screens
        GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
        Antibody Information
        Laboratory Generated Antibodies
         
        polyclonal
        (Chen et al., 2007)
        Commercially Available Antibodies
         
        Other Information
        Relationship to Other Genes
        Source for database identify of
        Source for identity of: Rnp4F CG3312
        (Zhong, 1999.11)
        Source for database merge of
        Additional comments
        Other Comments
        RNAi knockdown shows that the long Rnp4F isoform is required for normal central nervous system (CNS) development and acts upstream of other genes that are important for CNS development.
        (Chen et al., 2007)
        Isolated Rnp4F cDNAs represent three structurally different transcripts arising from alternative splicing and editing of Rnp4F via A-to-G conversions.
        (Petschek et al., 1997)
        RNA editing occurs in an alternatively spliced adult head transcript arising from the single-copy nuclear Rnp4F gene via numerous A to G conversions (as shown by comparison of genomic and cDNA nucleotide sequences).
        (Petschek et al., 1996)
        Origin and Etymology
        Discoverer
        Etymology
        Identification
        External Crossreferences and Linkouts ( 63 )
        Sequence Crossreferences
        NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
        GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
        GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.
        RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
        UniProt/Swiss-Prot - Manually annotated and reviewed records of protein sequence and functional information
        UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information
        Other crossreferences
        BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
        InterPro - A database of protein families, domains and functional sites
        Linkouts
        Drosophila Genomics Resource Center - Drosophila Genomics Resource Center cDNA clones
        DPiM - Drosophila Protein interaction map
        DroID - A comprehensive database of gene and protein interactions.
        DRSC - Results frm RNAi screens
        Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
        FLIGHT - Cell culture data for RNAi and other high-throughput technologies
        FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
        FlyCyc Genes - Genes from a BioCyc PGDB for Dmel
        Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
        Flygut - An atlas of the Drosophila adult midgut
        FlyMine - An integrated database for Drosophila genomics
        GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
        iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)
        InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.
        KEGG Genes - Molecular building blocks of life in the genomic space.
        MIST (protein-protein) - An integrated Molecular Interaction Database
        modMine - A data warehouse for the modENCODE project
        Synonyms and Secondary IDs (9)
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