A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Gene Dmel\RpL7A

General Information
SymbolDmel\RpL7ASpeciesD. melanogaster
NameRibosomal protein L7AAnnotation symbolCG3314
Feature typeprotein_coding_geneFlyBase IDFBgn0014026
Gene Model StatusCurrent Stock availability 4 publicly available
Also Known AsL7a
Genomic Location
Chromosome (arm)XRecombination map1-
Cytogenetic map6B1-6B1Sequence locationX:6,425,049..6,427,318 [-]

Genomic Maps

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modENCODE GBrowse
detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
The gene Ribosomal protein L7A is referred to in FlyBase by the symbol Dmel\RpL7A (CG3314, FBgn0014026). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: structural constituent of ribosome. There is experimental evidence that it is involved in the biological process: centrosome organization; mitotic spindle elongation; mitotic spindle organization; centrosome duplication. 3 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Ribosomal protein L7A/L8; Ribosomal protein L7Ae conserved site; Ribosomal protein L7Ae/L30e/S12e/Gadd45; Ribosomal protein L7Ae/L8/Nhp2 family. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of very high expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, during early pupal stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: High levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1639893_s_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of RpL7A. Gene sequence location is X:6425049..6427318.

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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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FB2012_01
Controlled Vocabulary Terms
References
Sequence features
FB2011_10
References
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
6B1-6B1  
Limits computationally determined from genome sequence between P{EP}EP1402&P{EP}CG15893EP1634 and P{EP}Ctr1AEP1364&P{EP}EP1445  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
6A-6B  
6A-6B  
(determined by in situ hybridisation)  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\RpL7A for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0070913 FBtr0091642 FBtr0070916 FBtr0070915 FBtr0070914 FBpp0070875 FBpp0070877 FBpp0070878 FBpp0070876 FBti0041594
Comments on Gene Model
Gene model reviewed during 5.39
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0070915
  1061
  271
FBtr0070916
  1091
  271
Additional Transcript Data & Comments
Reported size (kB)
1.1 (northern blot)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0070877  
30.7  
271  
11.44  
FBpp0070878  
30.7  
271  
11.44  
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
northern blot
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
RpL7A transcripts accumulate to high levels at all stages of development.
Marker for
Subcellular Localization
CV Term
Notes
hidePolypeptide Expression
mass spectroscopy
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hide High-Throughput Expression Data
or
Untitled Document detailed view Spat-RA snoRNA:Or-CD10-RA RpL7A-RD RpL7A-RA dx-RA
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

modENCODE Temporal Expression Data for FBgn0014026


   Styles
Linear
Logarithmic
Heatmap
   Scales
max expr for FBgn0014026
Very low expression bin max
Moderate expression bin max
High expression bin max
Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of very high expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, during early pupal stages, in adult female stages.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No expression (0 - 0)
 
Extremely low expression (1 - 10)
 
Very low expression (11 - 100)
 
Low expression (101 - 400)
 
Moderate expression (401 - 1400)
 
Moderately high expression (1401 - 4000)
 
High expression (4001 - 10000)
 
Very high expression (10001 - 100000)
 
Extremely high expression (100001 - 2000000)

Linear, scaled to maximum FBgn0014026 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 141751
embryo 02-04hr
 
 215461
embryo 04-06hr
 
 199100
embryo 06-08hr
 
 214440
embryo 08-10hr
 
 231767
embryo 10-12hr
 
 294998
embryo 12-14hr
 
 160955
embryo 14-16hr
 
 195725
embryo 16-18hr
 
 172225
embryo 18-20hr
 
 197284
embryo 20-22hr
 
 215624
embryo 22-24hr
 
 179519
larva L1
 
 222118
larva L2
 
 189386
larva L3 12hr old
 
 167515
larva L3 puffstage 1-2
 
 128296
larva L3 puffstage 3-6
 
 129622
larva L3 puffstage 7-9
 
 135592
white prepupae new
 
 111515
white prepupae 12hr
 
 96119
white prepupae 24hr
 
 102208
pupae 2d postWPP
 
 88775
pupae 3d postWPP
 
 74072
pupae 4d postWPP
 
 82240
adult male 01day
 
 66463
adult male 05day
 
 71175
adult male 30day
 
 78990
adult female 01day
 
 152351
adult female 05day
 
 146906
adult female 30day
 
 167554
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Linear, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (141751)
embryo 02-04hr
 (215461)
embryo 04-06hr
 (199100)
embryo 06-08hr
 (214440)
embryo 08-10hr
 (231767)
embryo 10-12hr
 (294998)
embryo 12-14hr
 (160955)
embryo 14-16hr
 (195725)
embryo 16-18hr
 (172225)
embryo 18-20hr
 (197284)
embryo 20-22hr
 (215624)
embryo 22-24hr
 (179519)
larva L1
 (222118)
larva L2
 (189386)
larva L3 12hr old
 (167515)
larva L3 puffstage 1-2
 (128296)
larva L3 puffstage 3-6
 (129622)
larva L3 puffstage 7-9
 (135592)
white prepupae new
 (111515)
white prepupae 12hr
 (96119)
white prepupae 24hr
 (102208)
pupae 2d postWPP
 (88775)
pupae 3d postWPP
 (74072)
pupae 4d postWPP
 (82240)
adult male 01day
 (66463)
adult male 05day
 (71175)
adult male 30day
 (78990)
adult female 01day
 (152351)
adult female 05day
 (146906)
adult female 30day
 (167554)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (141751)
embryo 02-04hr
 (215461)
embryo 04-06hr
 (199100)
embryo 06-08hr
 (214440)
embryo 08-10hr
 (231767)
embryo 10-12hr
 (294998)
embryo 12-14hr
 (160955)
embryo 14-16hr
 (195725)
embryo 16-18hr
 (172225)
embryo 18-20hr
 (197284)
embryo 20-22hr
 (215624)
embryo 22-24hr
 (179519)
larva L1
 (222118)
larva L2
 (189386)
larva L3 12hr old
 (167515)
larva L3 puffstage 1-2
 (128296)
larva L3 puffstage 3-6
 (129622)
larva L3 puffstage 7-9
 (135592)
white prepupae new
 (111515)
white prepupae 12hr
 (96119)
white prepupae 24hr
 (102208)
pupae 2d postWPP
 (88775)
pupae 3d postWPP
 (74072)
pupae 4d postWPP
 (82240)
adult male 01day
 (66463)
adult male 05day
 (71175)
adult male 30day
 (78990)
adult female 01day
 (152351)
adult female 05day
 (146906)
adult female 30day
 (167554)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 (141751)
embryo 02-04hr
 (215461)
embryo 04-06hr
 (199100)
embryo 06-08hr
 (214440)
embryo 08-10hr
 (231767)
embryo 10-12hr
 (294998)
embryo 12-14hr
 (160955)
embryo 14-16hr
 (195725)
embryo 16-18hr
 (172225)
embryo 18-20hr
 (197284)
embryo 20-22hr
 (215624)
embryo 22-24hr
 (179519)
larva L1
 (222118)
larva L2
 (189386)
larva L3 12hr old
 (167515)
larva L3 puffstage 1-2
 (128296)
larva L3 puffstage 3-6
 (129622)
larva L3 puffstage 7-9
 (135592)
white prepupae new
 (111515)
white prepupae 12hr
 (96119)
white prepupae 24hr
 (102208)
pupae 2d postWPP
 (88775)
pupae 3d postWPP
 (74072)
pupae 4d postWPP
 (82240)
adult male 01day
 (66463)
adult male 05day
 (71175)
adult male 30day
 (78990)
adult female 01day
 (152351)
adult female 05day
 (146906)
adult female 30day
 (167554)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 141751
embryo 02-04hr
 
 215461
embryo 04-06hr
 
 199100
embryo 06-08hr
 
 214440
embryo 08-10hr
 
 231767
embryo 10-12hr
 
 294998
embryo 12-14hr
 
 160955
embryo 14-16hr
 
 195725
embryo 16-18hr
 
 172225
embryo 18-20hr
 
 197284
embryo 20-22hr
 
 215624
embryo 22-24hr
 
 179519
larva L1
 
 222118
larva L2
 
 189386
larva L3 12hr old
 
 167515
larva L3 puffstage 1-2
 
 128296
larva L3 puffstage 3-6
 
 129622
larva L3 puffstage 7-9
 
 135592
white prepupae new
 
 111515
white prepupae 12hr
 
 96119
white prepupae 24hr
 
 102208
pupae 2d postWPP
 
 88775
pupae 3d postWPP
 
 74072
pupae 4d postWPP
 
 82240
adult male 01day
 
 66463
adult male 05day
 
 71175
adult male 30day
 
 78990
adult female 01day
 
 152351
adult female 05day
 
 146906
adult female 30day
 
 167554
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to maximum FBgn0014026 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 141751
embryo 02-04hr
 
 215461
embryo 04-06hr
 
 199100
embryo 06-08hr
 
 214440
embryo 08-10hr
 
 231767
embryo 10-12hr
 
 294998
embryo 12-14hr
 
 160955
embryo 14-16hr
 
 195725
embryo 16-18hr
 
 172225
embryo 18-20hr
 
 197284
embryo 20-22hr
 
 215624
embryo 22-24hr
 
 179519
larva L1
 
 222118
larva L2
 
 189386
larva L3 12hr old
 
 167515
larva L3 puffstage 1-2
 
 128296
larva L3 puffstage 3-6
 
 129622
larva L3 puffstage 7-9
 
 135592
white prepupae new
 
 111515
white prepupae 12hr
 
 96119
white prepupae 24hr
 
 102208
pupae 2d postWPP
 
 88775
pupae 3d postWPP
 
 74072
pupae 4d postWPP
 
 82240
adult male 01day
 
 66463
adult male 05day
 
 71175
adult male 30day
 
 78990
adult female 01day
 
 152351
adult female 05day
 
 146906
adult female 30day
 
 167554
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (141751)
embryo 02-04hr
 (215461)
embryo 04-06hr
 (199100)
embryo 06-08hr
 (214440)
embryo 08-10hr
 (231767)
embryo 10-12hr
 (294998)
embryo 12-14hr
 (160955)
embryo 14-16hr
 (195725)
embryo 16-18hr
 (172225)
embryo 18-20hr
 (197284)
embryo 20-22hr
 (215624)
embryo 22-24hr
 (179519)
larva L1
 (222118)
larva L2
 (189386)
larva L3 12hr old
 (167515)
larva L3 puffstage 1-2
 (128296)
larva L3 puffstage 3-6
 (129622)
larva L3 puffstage 7-9
 (135592)
white prepupae new
 (111515)
white prepupae 12hr
 (96119)
white prepupae 24hr
 (102208)
pupae 2d postWPP
 (88775)
pupae 3d postWPP
 (74072)
pupae 4d postWPP
 (82240)
adult male 01day
 (66463)
adult male 05day
 (71175)
adult male 30day
 (78990)
adult female 01day
 (152351)
adult female 05day
 (146906)
adult female 30day
 (167554)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (141751)
embryo 02-04hr
 (215461)
embryo 04-06hr
 (199100)
embryo 06-08hr
 (214440)
embryo 08-10hr
 (231767)
embryo 10-12hr
 (294998)
embryo 12-14hr
 (160955)
embryo 14-16hr
 (195725)
embryo 16-18hr
 (172225)
embryo 18-20hr
 (197284)
embryo 20-22hr
 (215624)
embryo 22-24hr
 (179519)
larva L1
 (222118)
larva L2
 (189386)
larva L3 12hr old
 (167515)
larva L3 puffstage 1-2
 (128296)
larva L3 puffstage 3-6
 (129622)
larva L3 puffstage 7-9
 (135592)
white prepupae new
 (111515)
white prepupae 12hr
 (96119)
white prepupae 24hr
 (102208)
pupae 2d postWPP
 (88775)
pupae 3d postWPP
 (74072)
pupae 4d postWPP
 (82240)
adult male 01day
 (66463)
adult male 05day
 (71175)
adult male 30day
 (78990)
adult female 01day
 (152351)
adult female 05day
 (146906)
adult female 30day
 (167554)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 (141751)
embryo 02-04hr
 (215461)
embryo 04-06hr
 (199100)
embryo 06-08hr
 (214440)
embryo 08-10hr
 (231767)
embryo 10-12hr
 (294998)
embryo 12-14hr
 (160955)
embryo 14-16hr
 (195725)
embryo 16-18hr
 (172225)
embryo 18-20hr
 (197284)
embryo 20-22hr
 (215624)
embryo 22-24hr
 (179519)
larva L1
 (222118)
larva L2
 (189386)
larva L3 12hr old
 (167515)
larva L3 puffstage 1-2
 (128296)
larva L3 puffstage 3-6
 (129622)
larva L3 puffstage 7-9
 (135592)
white prepupae new
 (111515)
white prepupae 12hr
 (96119)
white prepupae 24hr
 (102208)
pupae 2d postWPP
 (88775)
pupae 3d postWPP
 (74072)
pupae 4d postWPP
 (82240)
adult male 01day
 (66463)
adult male 05day
 (71175)
adult male 30day
 (78990)
adult female 01day
 (152351)
adult female 05day
 (146906)
adult female 30day
 (167554)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 141751
embryo 02-04hr
 
 215461
embryo 04-06hr
 
 199100
embryo 06-08hr
 
 214440
embryo 08-10hr
 
 231767
embryo 10-12hr
 
 294998
embryo 12-14hr
 
 160955
embryo 14-16hr
 
 195725
embryo 16-18hr
 
 172225
embryo 18-20hr
 
 197284
embryo 20-22hr
 
 215624
embryo 22-24hr
 
 179519
larva L1
 
 222118
larva L2
 
 189386
larva L3 12hr old
 
 167515
larva L3 puffstage 1-2
 
 128296
larva L3 puffstage 3-6
 
 129622
larva L3 puffstage 7-9
 
 135592
white prepupae new
 
 111515
white prepupae 12hr
 
 96119
white prepupae 24hr
 
 102208
pupae 2d postWPP
 
 88775
pupae 3d postWPP
 
 74072
pupae 4d postWPP
 
 82240
adult male 01day
 
 66463
adult male 05day
 
 71175
adult male 30day
 
 78990
adult female 01day
 
 152351
adult female 05day
 
 146906
adult female 30day
 
 167554
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

FlyAtlas Anatomical Expression Data for FBgn0014026


   Styles
Linear
Logarithmic
Heatmap
Back-to-back
   Scales
max expr for FBgn0014026
Moderate expression bin max
High level expression bin max
Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: High levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (1000 - 25000)

Linear, scaled to maximum FBgn0014026 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 2555.65
Larval Midgut
 
 3303.6
Larval Hindgut
 
 3728.8
Larval Malpighian Tubules
 
 4113.3
Larval Fat Body
 
 5670.1
Larval Salivary Gland
 
 6158
Larval Trachea
 
 5193.075
Larval Carcass
 
 3264.175
Adult Head
 
 3435.2
Adult Eye
 
 5695.675
Adult Brain
 
 2259.9
Adult Thoracic-Abdominal Ganglion
 
 3294.8
Adult Crop
 
 5360.2
Adult Midgut
 
 3975.3
Adult Hindgut
 
 4007.3
Adult Malpighian Tubules
 
 3910.7
Adult Fat Body
 
 4691.4
Adult Salivary Gland
 
 8806
Adult Heart
 
 4911.7
Adult VirginFemale Spermatheca
 
 4970.8
Adult InseminatedFemale Spermatheca
 
 5022.3
Adult Ovary
 
 2918.7
Adult Testis
 
 554.6
Adult Male Accessory Gland
 
 7159.7
Adult Carcass
 
 4337.9
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 (2555.65)
Larval Midgut
 (3303.6)
Larval Hindgut
 (3728.8)
Larval Malpighian Tubules
 (4113.3)
Larval Fat Body
 (5670.1)
Larval Salivary Gland
 (6158)
Larval Trachea
 (5193.075)
Larval Carcass
 (3264.175)
Adult Head
 (3435.2)
Adult Eye
 (5695.675)
Adult Brain
 (2259.9)
Adult Thoracic-Abdominal Ganglion
 (3294.8)
Adult Crop
 (5360.2)
Adult Midgut
 (3975.3)
Adult Hindgut
 (4007.3)
Adult Malpighian Tubules
 (3910.7)
Adult Fat Body
 (4691.4)
Adult Salivary Gland
 (8806)
Adult Heart
 (4911.7)
Adult VirginFemale Spermatheca
 (4970.8)
Adult InseminatedFemale Spermatheca
 (5022.3)
Adult Ovary
 (2918.7)
Adult Testis
 (554.6)
Adult Male Accessory Gland
 (7159.7)
Adult Carcass
 (4337.9)
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 (2555.65)
Larval Midgut
 (3303.6)
Larval Hindgut
 (3728.8)
Larval Malpighian Tubules
 (4113.3)
Larval Fat Body
 (5670.1)
Larval Salivary Gland
 (6158)
Larval Trachea
 (5193.075)
Larval Carcass
 (3264.175)
Adult Head
 (3435.2)
Adult Eye
 (5695.675)
Adult Brain
 (2259.9)
Adult Thoracic-Abdominal Ganglion
 (3294.8)
Adult Crop
 (5360.2)
Adult Midgut
 (3975.3)
Adult Hindgut
 (4007.3)
Adult Malpighian Tubules
 (3910.7)
Adult Fat Body
 (4691.4)
Adult Salivary Gland
 (8806)
Adult Heart
 (4911.7)
Adult VirginFemale Spermatheca
 (4970.8)
Adult InseminatedFemale Spermatheca
 (5022.3)
Adult Ovary
 (2918.7)
Adult Testis
 
 554.6
Adult Male Accessory Gland
 (7159.7)
Adult Carcass
 (4337.9)
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 2555.65
Larval Midgut
 
 3303.6
Larval Hindgut
 
 3728.8
Larval Malpighian Tubules
 
 4113.3
Larval Fat Body
 
 5670.1
Larval Salivary Gland
 
 6158
Larval Trachea
 
 5193.075
Larval Carcass
 
 3264.175
Adult Head
 
 3435.2
Adult Eye
 
 5695.675
Adult Brain
 
 2259.9
Adult Thoracic-Abdominal Ganglion
 
 3294.8
Adult Crop
 
 5360.2
Adult Midgut
 
 3975.3
Adult Hindgut
 
 4007.3
Adult Malpighian Tubules
 
 3910.7
Adult Fat Body
 
 4691.4
Adult Salivary Gland
 
 8806
Adult Heart
 
 4911.7
Adult VirginFemale Spermatheca
 
 4970.8
Adult InseminatedFemale Spermatheca
 
 5022.3
Adult Ovary
 
 2918.7
Adult Testis
 
 554.6
Adult Male Accessory Gland
 
 7159.7
Adult Carcass
 
 4337.9
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to maximum FBgn0014026 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 2555.65
Larval Midgut
 
 3303.6
Larval Hindgut
 
 3728.8
Larval Malpighian Tubules
 
 4113.3
Larval Fat Body
 
 5670.1
Larval Salivary Gland
 
 6158
Larval Trachea
 
 5193.075
Larval Carcass
 
 3264.175
Adult Head
 
 3435.2
Adult Eye
 
 5695.675
Adult Brain
 
 2259.9
Adult Thoracic-Abdominal Ganglion
 
 3294.8
Adult Crop
 
 5360.2
Adult Midgut
 
 3975.3
Adult Hindgut
 
 4007.3
Adult Malpighian Tubules
 
 3910.7
Adult Fat Body
 
 4691.4
Adult Salivary Gland
 
 8806
Adult Heart
 
 4911.7
Adult VirginFemale Spermatheca
 
 4970.8
Adult InseminatedFemale Spermatheca
 
 5022.3
Adult Ovary
 
 2918.7
Adult Testis
 
 554.6
Adult Male Accessory Gland
 
 7159.7
Adult Carcass
 
 4337.9
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 (2555.65)
Larval Midgut
 (3303.6)
Larval Hindgut
 (3728.8)
Larval Malpighian Tubules
 (4113.3)
Larval Fat Body
 (5670.1)
Larval Salivary Gland
 (6158)
Larval Trachea
 (5193.075)
Larval Carcass
 (3264.175)
Adult Head
 (3435.2)
Adult Eye
 (5695.675)
Adult Brain
 (2259.9)
Adult Thoracic-Abdominal Ganglion
 (3294.8)
Adult Crop
 (5360.2)
Adult Midgut
 (3975.3)
Adult Hindgut
 (4007.3)
Adult Malpighian Tubules
 (3910.7)
Adult Fat Body
 (4691.4)
Adult Salivary Gland
 (8806)
Adult Heart
 (4911.7)
Adult VirginFemale Spermatheca
 (4970.8)
Adult InseminatedFemale Spermatheca
 (5022.3)
Adult Ovary
 (2918.7)
Adult Testis
 554.6
Adult Male Accessory Gland
 (7159.7)
Adult Carcass
 (4337.9)
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 (2555.65)
Larval Midgut
 (3303.6)
Larval Hindgut
 (3728.8)
Larval Malpighian Tubules
 (4113.3)
Larval Fat Body
 (5670.1)
Larval Salivary Gland
 (6158)
Larval Trachea
 (5193.075)
Larval Carcass
 (3264.175)
Adult Head
 (3435.2)
Adult Eye
 (5695.675)
Adult Brain
 (2259.9)
Adult Thoracic-Abdominal Ganglion
 (3294.8)
Adult Crop
 (5360.2)
Adult Midgut
 (3975.3)
Adult Hindgut
 (4007.3)
Adult Malpighian Tubules
 (3910.7)
Adult Fat Body
 (4691.4)
Adult Salivary Gland
 (8806)
Adult Heart
 (4911.7)
Adult VirginFemale Spermatheca
 (4970.8)
Adult InseminatedFemale Spermatheca
 (5022.3)
Adult Ovary
 (2918.7)
Adult Testis
 
 554.6
Adult Male Accessory Gland
 (7159.7)
Adult Carcass
 (4337.9)
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 2555.65
Larval Midgut
 
 3303.6
Larval Hindgut
 
 3728.8
Larval Malpighian Tubules
 
 4113.3
Larval Fat Body
 
 5670.1
Larval Salivary Gland
 
 6158
Larval Trachea
 
 5193.075
Larval Carcass
 
 3264.175
Adult Head
 
 3435.2
Adult Eye
 
 5695.675
Adult Brain
 
 2259.9
Adult Thoracic-Abdominal Ganglion
 
 3294.8
Adult Crop
 
 5360.2
Adult Midgut
 
 3975.3
Adult Hindgut
 
 4007.3
Adult Malpighian Tubules
 
 3910.7
Adult Fat Body
 
 4691.4
Adult Salivary Gland
 
 8806
Adult Heart
 
 4911.7
Adult VirginFemale Spermatheca
 
 4970.8
Adult InseminatedFemale Spermatheca
 
 5022.3
Adult Ovary
 
 2918.7
Adult Testis
 
 554.6
Adult Male Accessory Gland
 
 7159.7
Adult Carcass
 
 4337.9
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body
 
 
Adult Salivary Gland
 
 
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass
 
 

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 3435.2
 
NA 
Eye
 
 5695.675
 
NA 
Brain
 
 2259.9
 
2555.65 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 3294.8
 
NA 
Crop
 
 5360.2
 
3303.6 
Midgut
 
 3975.3
 
3728.8 
Hindgut
 
 4007.3
 
4113.3 
Malpighian Tubules
 
 3910.7
 
5670.1 
Fat Body
 
 4691.4
 
6158 
Salivary Gland
 
 8806
 
NA 
Heart
 
 4911.7
 
5193.075 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 4970.8
 
NA 
InseminatedFemale Spermatheca
 
 5022.3
 
NA 
Ovary
 
 2918.7
 
NA 
Testis
 
 554.6
 
NA 
Male Accessory Gland
 
 7159.7
 
3264.175 
Carcass
 
 4337.9

modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Sterility
Allele
Phenotype manifest in
Allele
hide Classical Alleles ( 1 )
For All Classical Alleles Show

Allele of RpL7AClassMutagenStocksKnown lesion
RpL7Ae023362 --
hide Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show

Allele of RpL7AClassMutagenStocksKnown lesion
RpL7AGD109341 Yes
RpL7AKK1023721 Yes
hide Aneuploid Aberrations
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
UAS construct
Insertions
Type of insertions
Name
Expression data
miscellaneous insertions
hide Gene Ontology: Function, Process & Cellular Component ( 9 unique terms )
hide Terms Based on Experimental Evidence ( 5 terms )
Molecular Function ( 0 terms)
Biological Process
CV term
References
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
Cellular Component
CV term
References
inferred from direct assay
hide Terms Based on Predictions or Assertions ( 5 terms )
Molecular Function
CV term
References
inferred from sequence or structural similarity with UniProtKB:P12970
non-traceable author statement
Biological Process
CV term
References
inferred from sequence or structural similarity with UniProtKB:P12970
non-traceable author statement
Cellular Component
CV term
References
inferred from sequence or structural similarity with UniProtKB:P12970
non-traceable author statement
non-traceable author statement
hide Sequence Ontology: Class of Gene
hide Interactions & Pathways
hide Summary of Physical Interactions
Protein-protein
Interacting group
Assay
References
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
RpL7A allele
Gene
References
hide External Data
Linkouts
BioGRID - A database of protein and genetic interactions
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs
Linkouts
InParanoid A subset of ortholog calls from InParanoid.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 4 )
Bloomington
Harvard
VDRC
hide Genomic Clones ( 2 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 970 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
hide RNAi & Array Information
Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
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hide Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
"RpL7A" likely corresponds to "M(1)5D6A".
hide Other Comments
RNAi screen using dsRNA made from templates generated with primers directed against this gene results in aberrantly short, monopolar spindles when assayed in S2 cells. This phenotype can be observed when the screen is performed with or without Cdc27 dsRNA.
Likely Minute gene.
Deletions removing RpL7A but no other cytoplasmic ribosomal protein-encoding genes show Minute phenotypes.
RNAi generated by PCR using primers directed to this gene causes a cell growth and viability phenotype when assayed in Kc167 and S2R+ cells.
Isolated using a mouse Surf-3/rpL7a cDNA as a probe, under low stringency conditions.
The genomic organisation of the RpL7A locus has been analysed.
The RpL7A transcription unit was identified during a molecular analysis of the dx region.
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Linkouts
BioGRID - A database of protein and genetic interactions
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InParanoid A subset of ortholog calls from InParanoid.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Synonyms & Secondary IDs ( 8 )
Reported As
Symbol Synonym
Surf3/rpL7a
Surf-3/rpL7a
Name Synonym
Ribosomal protein L7A
Secondary FlyBase IDs
hide References ( 29 )
Generate a list of
List References by type
hide Recent research papers ( 3 )
Booker et al., 2011, BMC Genomics 12: 50
False negative rates in Drosophila cell-based RNAi screens: a case study. [FBrf0212969]
Casad et al., 2011, Genetics 189(3): 861--870
Cardiomyopathy Is Associated with Ribosomal Protein Gene Haplo-Insufficiency in Drosophila melanogaster. [FBrf0216591]
Müller et al., 2010, EMBO J. 29(19): 3344--3357
Proteomic and functional analysis of the mitotic Drosophila centrosome. [FBrf0212030]