A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Gene Dmel\RpL7A

General Information
SymbolDmel\RpL7ASpeciesD. melanogaster
NameRibosomal protein L7AAnnotation symbolCG3314
Feature typeprotein_coding_geneFlyBase IDFBgn0014026
Gene Model StatusCurrent Stock availability 4 publicly available
Also Known AsL7a
Genomic Location
Chromosome (arm)XRecombination map1-
Cytogenetic map6B1-6B1Sequence locationX:6,425,049..6,427,318 [-]

Genomic Maps

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Automatically generated summary

See sections below for more information
The gene Ribosomal protein L7A is referred to in FlyBase by the symbol Dmel\RpL7A (CG3314, FBgn0014026). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: structural constituent of ribosome. There is experimental evidence that it is involved in the biological process: centrosome organization; mitotic spindle elongation; mitotic spindle organization; centrosome duplication. 4 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Ribosomal protein L7A/L8; Ribosomal protein L7Ae conserved site; Ribosomal protein L7Ae/L30e/S12e/Gadd45; Ribosomal protein L7Ae/L8/Nhp2 family. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of very high expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, during early pupal stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: High levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1639893_s_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of RpL7A. Gene sequence location is X:6425049..6427318.

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Description
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FB2013_03
FB2013_02
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hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
6B1-6B1  
Limits computationally determined from genome sequence between P{EP}EP1402&P{EP}CG15893EP1634 and P{EP}Ctr1AEP1364&P{EP}EP1445  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
6A-6B  
6A-6B  
(determined by in situ hybridisation)  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\RpL7A for information on other features GBrowse View Help
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0070913 FBtr0091642 FBtr0070916 FBtr0070915 FBtr0070914 FBpp0070875 FBpp0070877 FBpp0070878 FBpp0070876 FBti0041594
Comments on Gene Model
Gene model reviewed during 5.39
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0070915
  1061
  271
FBtr0070916
  1091
  271
Additional Transcript Data & Comments
Reported size (kB)
1.1 (northern blot)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0070877  
30.7  
271  
11.44  
FBpp0070878  
30.7  
271  
11.44  
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
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Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
northern blot
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
RpL7A transcripts accumulate to high levels at all stages of development.
Marker for
Subcellular Localization
CV Term
hide Polypeptide Expression
mass spectroscopy
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term
References
inferred from direct assay
hide Expression Deduced from Reporters
hide High-Throughput Expression Data
Associated Tools
Reference
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
hide FlyAtlas Anatomy Microarray

FlyAtlas Anatomical Expression Data

(FlyAtlas-RNA.adult)

(FlyAtlas-RNA.larva)


   Styles
   Scales

Summary of FlyAtlas Anatomical Expression Data: High levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (>999.999)

Linear, scaled to maximum expression level
Tissue   Expression Level
Larval Central Nervous System
 
 2555.65
Larval Midgut
 
 3303.6
Larval Hindgut
 
 3728.8
Larval Malpighian Tubules
 
 4113.3
Larval Fat Body
 
 5670.1
Larval Salivary Gland
 
 6158
Larval Trachea
 
 5193.075
Larval Carcass
 
 3264.175
Adult Head
 
 3435.2
Adult Eye
 
 5695.675
Adult Brain
 
 2259.9
Adult Thoracic-Abdominal Ganglion
 
 3294.8
Adult Crop
 
 5360.2
Adult Midgut
 
 3975.3
Adult Hindgut
 
 4007.3
Adult Malpighian Tubules
 
 3910.7
Adult Fat Body
 
 4691.4
Adult Salivary Gland
 
 8806
Adult Heart
 
 4911.7
Adult VirginFemale Spermatheca
 
 4970.8
Adult InseminatedFemale Spermatheca
 
 5022.3
Adult Ovary
 
 2918.7
Adult Testis
 
 554.6
Adult Male Accessory Gland
 
 7159.7
Adult Carcass
 
 4337.9
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 (2555.65)
Larval Midgut
 (3303.6)
Larval Hindgut
 (3728.8)
Larval Malpighian Tubules
 (4113.3)
Larval Fat Body
 (5670.1)
Larval Salivary Gland
 (6158)
Larval Trachea
 (5193.075)
Larval Carcass
 (3264.175)
Adult Head
 (3435.2)
Adult Eye
 (5695.675)
Adult Brain
 (2259.9)
Adult Thoracic-Abdominal Ganglion
 (3294.8)
Adult Crop
 (5360.2)
Adult Midgut
 (3975.3)
Adult Hindgut
 (4007.3)
Adult Malpighian Tubules
 (3910.7)
Adult Fat Body
 (4691.4)
Adult Salivary Gland
 (8806)
Adult Heart
 (4911.7)
Adult VirginFemale Spermatheca
 (4970.8)
Adult InseminatedFemale Spermatheca
 (5022.3)
Adult Ovary
 (2918.7)
Adult Testis
 (554.6)
Adult Male Accessory Gland
 (7159.7)
Adult Carcass
 (4337.9)
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 (2555.65)
Larval Midgut
 (3303.6)
Larval Hindgut
 (3728.8)
Larval Malpighian Tubules
 (4113.3)
Larval Fat Body
 (5670.1)
Larval Salivary Gland
 (6158)
Larval Trachea
 (5193.075)
Larval Carcass
 (3264.175)
Adult Head
 (3435.2)
Adult Eye
 (5695.675)
Adult Brain
 (2259.9)
Adult Thoracic-Abdominal Ganglion
 (3294.8)
Adult Crop
 (5360.2)
Adult Midgut
 (3975.3)
Adult Hindgut
 (4007.3)
Adult Malpighian Tubules
 (3910.7)
Adult Fat Body
 (4691.4)
Adult Salivary Gland
 (8806)
Adult Heart
 (4911.7)
Adult VirginFemale Spermatheca
 (4970.8)
Adult InseminatedFemale Spermatheca
 (5022.3)
Adult Ovary
 (2918.7)
Adult Testis
 
 554.6
Adult Male Accessory Gland
 (7159.7)
Adult Carcass
 (4337.9)
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 2555.65
Larval Midgut
 
 3303.6
Larval Hindgut
 
 3728.8
Larval Malpighian Tubules
 
 4113.3
Larval Fat Body
 
 5670.1
Larval Salivary Gland
 
 6158
Larval Trachea
 
 5193.075
Larval Carcass
 
 3264.175
Adult Head
 
 3435.2
Adult Eye
 
 5695.675
Adult Brain
 
 2259.9
Adult Thoracic-Abdominal Ganglion
 
 3294.8
Adult Crop
 
 5360.2
Adult Midgut
 
 3975.3
Adult Hindgut
 
 4007.3
Adult Malpighian Tubules
 
 3910.7
Adult Fat Body
 
 4691.4
Adult Salivary Gland
 
 8806
Adult Heart
 
 4911.7
Adult VirginFemale Spermatheca
 
 4970.8
Adult InseminatedFemale Spermatheca
 
 5022.3
Adult Ovary
 
 2918.7
Adult Testis
 
 554.6
Adult Male Accessory Gland
 
 7159.7
Adult Carcass
 
 4337.9
Expression Level Scale
 Very high 
log, scaled to maximum expression level
Tissue   Expression Level
Larval Central Nervous System
 
 2555.65
Larval Midgut
 
 3303.6
Larval Hindgut
 
 3728.8
Larval Malpighian Tubules
 
 4113.3
Larval Fat Body
 
 5670.1
Larval Salivary Gland
 
 6158
Larval Trachea
 
 5193.075
Larval Carcass
 
 3264.175
Adult Head
 
 3435.2
Adult Eye
 
 5695.675
Adult Brain
 
 2259.9
Adult Thoracic-Abdominal Ganglion
 
 3294.8
Adult Crop
 
 5360.2
Adult Midgut
 
 3975.3
Adult Hindgut
 
 4007.3
Adult Malpighian Tubules
 
 3910.7
Adult Fat Body
 
 4691.4
Adult Salivary Gland
 
 8806
Adult Heart
 
 4911.7
Adult VirginFemale Spermatheca
 
 4970.8
Adult InseminatedFemale Spermatheca
 
 5022.3
Adult Ovary
 
 2918.7
Adult Testis
 
 554.6
Adult Male Accessory Gland
 
 7159.7
Adult Carcass
 
 4337.9
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 (2555.65)
Larval Midgut
 (3303.6)
Larval Hindgut
 (3728.8)
Larval Malpighian Tubules
 (4113.3)
Larval Fat Body
 (5670.1)
Larval Salivary Gland
 (6158)
Larval Trachea
 (5193.075)
Larval Carcass
 (3264.175)
Adult Head
 (3435.2)
Adult Eye
 (5695.675)
Adult Brain
 (2259.9)
Adult Thoracic-Abdominal Ganglion
 (3294.8)
Adult Crop
 (5360.2)
Adult Midgut
 (3975.3)
Adult Hindgut
 (4007.3)
Adult Malpighian Tubules
 (3910.7)
Adult Fat Body
 (4691.4)
Adult Salivary Gland
 (8806)
Adult Heart
 (4911.7)
Adult VirginFemale Spermatheca
 (4970.8)
Adult InseminatedFemale Spermatheca
 (5022.3)
Adult Ovary
 (2918.7)
Adult Testis
 554.6
Adult Male Accessory Gland
 (7159.7)
Adult Carcass
 (4337.9)
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 (2555.65)
Larval Midgut
 (3303.6)
Larval Hindgut
 (3728.8)
Larval Malpighian Tubules
 (4113.3)
Larval Fat Body
 (5670.1)
Larval Salivary Gland
 (6158)
Larval Trachea
 (5193.075)
Larval Carcass
 (3264.175)
Adult Head
 (3435.2)
Adult Eye
 (5695.675)
Adult Brain
 (2259.9)
Adult Thoracic-Abdominal Ganglion
 (3294.8)
Adult Crop
 (5360.2)
Adult Midgut
 (3975.3)
Adult Hindgut
 (4007.3)
Adult Malpighian Tubules
 (3910.7)
Adult Fat Body
 (4691.4)
Adult Salivary Gland
 (8806)
Adult Heart
 (4911.7)
Adult VirginFemale Spermatheca
 (4970.8)
Adult InseminatedFemale Spermatheca
 (5022.3)
Adult Ovary
 (2918.7)
Adult Testis
 
 554.6
Adult Male Accessory Gland
 (7159.7)
Adult Carcass
 (4337.9)
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 2555.65
Larval Midgut
 
 3303.6
Larval Hindgut
 
 3728.8
Larval Malpighian Tubules
 
 4113.3
Larval Fat Body
 
 5670.1
Larval Salivary Gland
 
 6158
Larval Trachea
 
 5193.075
Larval Carcass
 
 3264.175
Adult Head
 
 3435.2
Adult Eye
 
 5695.675
Adult Brain
 
 2259.9
Adult Thoracic-Abdominal Ganglion
 
 3294.8
Adult Crop
 
 5360.2
Adult Midgut
 
 3975.3
Adult Hindgut
 
 4007.3
Adult Malpighian Tubules
 
 3910.7
Adult Fat Body
 
 4691.4
Adult Salivary Gland
 
 8806
Adult Heart
 
 4911.7
Adult VirginFemale Spermatheca
 
 4970.8
Adult InseminatedFemale Spermatheca
 
 5022.3
Adult Ovary
 
 2918.7
Adult Testis
 
 554.6
Adult Male Accessory Gland
 
 7159.7
Adult Carcass
 
 4337.9
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body
 
 
Adult Salivary Gland
 
 
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass
 
 

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 3435.2
 
NA 
Eye
 
 5695.675
 
NA 
Brain
 
 2259.9
 
2555.65 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 3294.8
 
NA 
Crop
 
 5360.2
 
3303.6 
Midgut
 
 3975.3
 
3728.8 
Hindgut
 
 4007.3
 
4113.3 
Malpighian Tubules
 
 3910.7
 
5670.1 
Fat Body
 
 4691.4
 
6158 
Salivary Gland
 
 8806
 
NA 
Heart
 
 4911.7
 
5193.075 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 4970.8
 
NA 
InseminatedFemale Spermatheca
 
 5022.3
 
NA 
Ovary
 
 2918.7
 
NA 
Testis
 
 554.6
 
NA 
Male Accessory Gland
 
 7159.7
 
3264.175 
Carcass
 
 4337.9

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 1808
central nervous system, larvae L3
 
 1193
central nervous system, pupae P8
 
 459
head, virgin 1-day female
 
 682
head, virgin 4-day female
 
 1047
head, virgin 20-day female
 
 1339
head, mated 1-day female
 
 631
head, mated 4-day female
 
 729
head, mated 20-day female
 
 1030
head, mated 1-day male
 
 695
head, mated 4-day male
 
 610
head, mated 20-day male
 
 752
salivary gland, larvae L3 wandering
 
 685
salivary gland, white prepupae
 
 1496
digestive system, larvae L3 wandering
 
 960
digestive system, 1-day adult
 
 797
digestive system, 4-day adult
 
 697
digestive system, 20-day adult
 
 827
fat body, larvae L3 wandering
 
 837
fat body, white prepupae
 
 552
fat body, pupae P8
 
 950
carcass, larvae L3 wandering
 
 1378
carcass, 1-day adult
 
 651
carcass, 4-day adult
 
 748
carcass, 20-day adult
 
 1107
ovary, virgin 4-day female
 
 1120
ovary, mated 4-day female
 
 1003
testis, mated 4-day male
 
 467
accessory gland, mated 4-day male
 
 997
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Linear, scaled to Moderate expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 (1808)
central nervous system, larvae L3
 (1193)
central nervous system, pupae P8
 (459)
head, virgin 1-day female
 (682)
head, virgin 4-day female
 (1047)
head, virgin 20-day female
 (1339)
head, mated 1-day female
 (631)
head, mated 4-day female
 (729)
head, mated 20-day female
 (1030)
head, mated 1-day male
 (695)
head, mated 4-day male
 (610)
head, mated 20-day male
 (752)
salivary gland, larvae L3 wandering
 (685)
salivary gland, white prepupae
 (1496)
digestive system, larvae L3 wandering
 (960)
digestive system, 1-day adult
 (797)
digestive system, 4-day adult
 (697)
digestive system, 20-day adult
 (827)
fat body, larvae L3 wandering
 (837)
fat body, white prepupae
 (552)
fat body, pupae P8
 (950)
carcass, larvae L3 wandering
 (1378)
carcass, 1-day adult
 (651)
carcass, 4-day adult
 (748)
carcass, 20-day adult
 (1107)
ovary, virgin 4-day female
 (1120)
ovary, mated 4-day female
 (1003)
testis, mated 4-day male
 (467)
accessory gland, mated 4-day male
 (997)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 (1808)
central nervous system, larvae L3
 (1193)
central nervous system, pupae P8
 (459)
head, virgin 1-day female
 (682)
head, virgin 4-day female
 (1047)
head, virgin 20-day female
 (1339)
head, mated 1-day female
 (631)
head, mated 4-day female
 (729)
head, mated 20-day female
 (1030)
head, mated 1-day male
 (695)
head, mated 4-day male
 (610)
head, mated 20-day male
 (752)
salivary gland, larvae L3 wandering
 (685)
salivary gland, white prepupae
 (1496)
digestive system, larvae L3 wandering
 (960)
digestive system, 1-day adult
 (797)
digestive system, 4-day adult
 (697)
digestive system, 20-day adult
 (827)
fat body, larvae L3 wandering
 (837)
fat body, white prepupae
 (552)
fat body, pupae P8
 (950)
carcass, larvae L3 wandering
 (1378)
carcass, 1-day adult
 (651)
carcass, 4-day adult
 (748)
carcass, 20-day adult
 (1107)
ovary, virgin 4-day female
 (1120)
ovary, mated 4-day female
 (1003)
testis, mated 4-day male
 (467)
accessory gland, mated 4-day male
 (997)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 1808
central nervous system, larvae L3
 
 1193
central nervous system, pupae P8
 
 459
head, virgin 1-day female
 
 682
head, virgin 4-day female
 
 1047
head, virgin 20-day female
 
 1339
head, mated 1-day female
 
 631
head, mated 4-day female
 
 729
head, mated 20-day female
 
 1030
head, mated 1-day male
 
 695
head, mated 4-day male
 
 610
head, mated 20-day male
 
 752
salivary gland, larvae L3 wandering
 
 685
salivary gland, white prepupae
 
 1496
digestive system, larvae L3 wandering
 
 960
digestive system, 1-day adult
 
 797
digestive system, 4-day adult
 
 697
digestive system, 20-day adult
 
 827
fat body, larvae L3 wandering
 
 837
fat body, white prepupae
 
 552
fat body, pupae P8
 
 950
carcass, larvae L3 wandering
 
 1378
carcass, 1-day adult
 
 651
carcass, 4-day adult
 
 748
carcass, 20-day adult
 
 1107
ovary, virgin 4-day female
 
 1120
ovary, mated 4-day female
 
 1003
testis, mated 4-day male
 
 467
accessory gland, mated 4-day male
 
 997
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 1808
central nervous system, larvae L3
 
 1193
central nervous system, pupae P8
 
 459
head, virgin 1-day female
 
 682
head, virgin 4-day female
 
 1047
head, virgin 20-day female
 
 1339
head, mated 1-day female
 
 631
head, mated 4-day female
 
 729
head, mated 20-day female
 
 1030
head, mated 1-day male
 
 695
head, mated 4-day male
 
 610
head, mated 20-day male
 
 752
salivary gland, larvae L3 wandering
 
 685
salivary gland, white prepupae
 
 1496
digestive system, larvae L3 wandering
 
 960
digestive system, 1-day adult
 
 797
digestive system, 4-day adult
 
 697
digestive system, 20-day adult
 
 827
fat body, larvae L3 wandering
 
 837
fat body, white prepupae
 
 552
fat body, pupae P8
 
 950
carcass, larvae L3 wandering
 
 1378
carcass, 1-day adult
 
 651
carcass, 4-day adult
 
 748
carcass, 20-day adult
 
 1107
ovary, virgin 4-day female
 
 1120
ovary, mated 4-day female
 
 1003
testis, mated 4-day male
 
 467
accessory gland, mated 4-day male
 
 997
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to Moderate expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 (1808)
central nervous system, larvae L3
 (1193)
central nervous system, pupae P8
 (459)
head, virgin 1-day female
 (682)
head, virgin 4-day female
 (1047)
head, virgin 20-day female
 (1339)
head, mated 1-day female
 (631)
head, mated 4-day female
 (729)
head, mated 20-day female
 (1030)
head, mated 1-day male
 (695)
head, mated 4-day male
 (610)
head, mated 20-day male
 (752)
salivary gland, larvae L3 wandering
 (685)
salivary gland, white prepupae
 (1496)
digestive system, larvae L3 wandering
 (960)
digestive system, 1-day adult
 (797)
digestive system, 4-day adult
 (697)
digestive system, 20-day adult
 (827)
fat body, larvae L3 wandering
 (837)
fat body, white prepupae
 (552)
fat body, pupae P8
 (950)
carcass, larvae L3 wandering
 (1378)
carcass, 1-day adult
 (651)
carcass, 4-day adult
 (748)
carcass, 20-day adult
 (1107)
ovary, virgin 4-day female
 (1120)
ovary, mated 4-day female
 (1003)
testis, mated 4-day male
 (467)
accessory gland, mated 4-day male
 (997)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 (1808)
central nervous system, larvae L3
 (1193)
central nervous system, pupae P8
 (459)
head, virgin 1-day female
 (682)
head, virgin 4-day female
 (1047)
head, virgin 20-day female
 (1339)
head, mated 1-day female
 (631)
head, mated 4-day female
 (729)
head, mated 20-day female
 (1030)
head, mated 1-day male
 (695)
head, mated 4-day male
 (610)
head, mated 20-day male
 (752)
salivary gland, larvae L3 wandering
 (685)
salivary gland, white prepupae
 (1496)
digestive system, larvae L3 wandering
 (960)
digestive system, 1-day adult
 (797)
digestive system, 4-day adult
 (697)
digestive system, 20-day adult
 (827)
fat body, larvae L3 wandering
 (837)
fat body, white prepupae
 (552)
fat body, pupae P8
 (950)
carcass, larvae L3 wandering
 (1378)
carcass, 1-day adult
 (651)
carcass, 4-day adult
 (748)
carcass, 20-day adult
 (1107)
ovary, virgin 4-day female
 (1120)
ovary, mated 4-day female
 (1003)
testis, mated 4-day male
 (467)
accessory gland, mated 4-day male
 (997)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 1808
central nervous system, larvae L3
 
 1193
central nervous system, pupae P8
 
 459
head, virgin 1-day female
 
 682
head, virgin 4-day female
 
 1047
head, virgin 20-day female
 
 1339
head, mated 1-day female
 
 631
head, mated 4-day female
 
 729
head, mated 20-day female
 
 1030
head, mated 1-day male
 
 695
head, mated 4-day male
 
 610
head, mated 20-day male
 
 752
salivary gland, larvae L3 wandering
 
 685
salivary gland, white prepupae
 
 1496
digestive system, larvae L3 wandering
 
 960
digestive system, 1-day adult
 
 797
digestive system, 4-day adult
 
 697
digestive system, 20-day adult
 
 827
fat body, larvae L3 wandering
 
 837
fat body, white prepupae
 
 552
fat body, pupae P8
 
 950
carcass, larvae L3 wandering
 
 1378
carcass, 1-day adult
 
 651
carcass, 4-day adult
 
 748
carcass, 20-day adult
 
 1107
ovary, virgin 4-day female
 
 1120
ovary, mated 4-day female
 
 1003
testis, mated 4-day male
 
 467
accessory gland, mated 4-day male
 
 997
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 
central nervous system, larvae L3
 
 
central nervous system, pupae P8
 
 
head, virgin 1-day female
 
 
head, virgin 4-day female
 
 
head, virgin 20-day female
 
 
head, mated 1-day female
 
 
head, mated 4-day female
 
 
head, mated 20-day female
 
 
head, mated 1-day male
 
 
head, mated 4-day male
 
 
head, mated 20-day male
 
 
salivary gland, larvae L3 wandering
 
 
salivary gland, white prepupae
 
 
digestive system, larvae L3 wandering
 
 
digestive system, 1-day adult
 
 
digestive system, 4-day adult
 
 
digestive system, 20-day adult
 
 
fat body, larvae L3 wandering
 
 
fat body, white prepupae
 
 
fat body, pupae P8
 
 
carcass, larvae L3 wandering
 
 
carcass, 1-day adult
 
 
carcass, 4-day adult
 
 
carcass, 20-day adult
 
 
ovary, virgin 4-day female
 
 
ovary, mated 4-day female
 
 
testis, mated 4-day male
 
 
accessory gland, mated 4-day male
 
 

hide modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)


   Styles
   Scales

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of very high expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, during early pupal stages, in adult female stages.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 1865
embryo 02-04hr
 
 2835
embryo 04-06hr
 
 2620
embryo 06-08hr
 
 2822
embryo 08-10hr
 
 3050
embryo 10-12hr
 
 3882
embryo 12-14hr
 
 2118
embryo 14-16hr
 
 2575
embryo 16-18hr
 
 2266
embryo 18-20hr
 
 2596
embryo 20-22hr
 
 2837
embryo 22-24hr
 
 2362
larva L1
 
 2923
larva L2
 
 2492
larva L3 12hr old
 
 2205
larva L3 puffstage 1-2
 
 1688
larva L3 puffstage 3-6
 
 1706
larva L3 puffstage 7-9
 
 1784
white prepupae new
 
 1467
white prepupae 12hr
 
 1265
white prepupae 24hr
 
 1345
pupae 2d postWPP
 
 1168
pupae 3d postWPP
 
 975
pupae 4d postWPP
 
 1082
adult male 01day
 
 875
adult male 05day
 
 937
adult male 30day
 
 1039
adult female 01day
 
 2005
adult female 05day
 
 1933
adult female 30day
 
 2205
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (1865)
embryo 02-04hr
 (2835)
embryo 04-06hr
 (2620)
embryo 06-08hr
 (2822)
embryo 08-10hr
 (3050)
embryo 10-12hr
 (3882)
embryo 12-14hr
 (2118)
embryo 14-16hr
 (2575)
embryo 16-18hr
 (2266)
embryo 18-20hr
 (2596)
embryo 20-22hr
 (2837)
embryo 22-24hr
 (2362)
larva L1
 (2923)
larva L2
 (2492)
larva L3 12hr old
 (2205)
larva L3 puffstage 1-2
 (1688)
larva L3 puffstage 3-6
 (1706)
larva L3 puffstage 7-9
 (1784)
white prepupae new
 (1467)
white prepupae 12hr
 (1265)
white prepupae 24hr
 (1345)
pupae 2d postWPP
 (1168)
pupae 3d postWPP
 (975)
pupae 4d postWPP
 (1082)
adult male 01day
 (875)
adult male 05day
 (937)
adult male 30day
 (1039)
adult female 01day
 (2005)
adult female 05day
 (1933)
adult female 30day
 (2205)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 (1865)
embryo 02-04hr
 (2835)
embryo 04-06hr
 (2620)
embryo 06-08hr
 (2822)
embryo 08-10hr
 (3050)
embryo 10-12hr
 (3882)
embryo 12-14hr
 (2118)
embryo 14-16hr
 (2575)
embryo 16-18hr
 (2266)
embryo 18-20hr
 (2596)
embryo 20-22hr
 (2837)
embryo 22-24hr
 (2362)
larva L1
 (2923)
larva L2
 (2492)
larva L3 12hr old
 (2205)
larva L3 puffstage 1-2
 (1688)
larva L3 puffstage 3-6
 (1706)
larva L3 puffstage 7-9
 (1784)
white prepupae new
 (1467)
white prepupae 12hr
 (1265)
white prepupae 24hr
 (1345)
pupae 2d postWPP
 (1168)
pupae 3d postWPP
 (975)
pupae 4d postWPP
 (1082)
adult male 01day
 (875)
adult male 05day
 (937)
adult male 30day
 (1039)
adult female 01day
 (2005)
adult female 05day
 (1933)
adult female 30day
 (2205)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 1865
embryo 02-04hr
 
 2835
embryo 04-06hr
 
 2620
embryo 06-08hr
 
 2822
embryo 08-10hr
 
 3050
embryo 10-12hr
 
 3882
embryo 12-14hr
 
 2118
embryo 14-16hr
 
 2575
embryo 16-18hr
 
 2266
embryo 18-20hr
 
 2596
embryo 20-22hr
 
 2837
embryo 22-24hr
 
 2362
larva L1
 
 2923
larva L2
 
 2492
larva L3 12hr old
 
 2205
larva L3 puffstage 1-2
 
 1688
larva L3 puffstage 3-6
 
 1706
larva L3 puffstage 7-9
 
 1784
white prepupae new
 
 1467
white prepupae 12hr
 
 1265
white prepupae 24hr
 
 1345
pupae 2d postWPP
 
 1168
pupae 3d postWPP
 
 975
pupae 4d postWPP
 
 1082
adult male 01day
 
 875
adult male 05day
 
 937
adult male 30day
 
 1039
adult female 01day
 
 2005
adult female 05day
 
 1933
adult female 30day
 
 2205
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 1865
embryo 02-04hr
 
 2835
embryo 04-06hr
 
 2620
embryo 06-08hr
 
 2822
embryo 08-10hr
 
 3050
embryo 10-12hr
 
 3882
embryo 12-14hr
 
 2118
embryo 14-16hr
 
 2575
embryo 16-18hr
 
 2266
embryo 18-20hr
 
 2596
embryo 20-22hr
 
 2837
embryo 22-24hr
 
 2362
larva L1
 
 2923
larva L2
 
 2492
larva L3 12hr old
 
 2205
larva L3 puffstage 1-2
 
 1688
larva L3 puffstage 3-6
 
 1706
larva L3 puffstage 7-9
 
 1784
white prepupae new
 
 1467
white prepupae 12hr
 
 1265
white prepupae 24hr
 
 1345
pupae 2d postWPP
 
 1168
pupae 3d postWPP
 
 975
pupae 4d postWPP
 
 1082
adult male 01day
 
 875
adult male 05day
 
 937
adult male 30day
 
 1039
adult female 01day
 
 2005
adult female 05day
 
 1933
adult female 30day
 
 2205
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (1865)
embryo 02-04hr
 (2835)
embryo 04-06hr
 (2620)
embryo 06-08hr
 (2822)
embryo 08-10hr
 (3050)
embryo 10-12hr
 (3882)
embryo 12-14hr
 (2118)
embryo 14-16hr
 (2575)
embryo 16-18hr
 (2266)
embryo 18-20hr
 (2596)
embryo 20-22hr
 (2837)
embryo 22-24hr
 (2362)
larva L1
 (2923)
larva L2
 (2492)
larva L3 12hr old
 (2205)
larva L3 puffstage 1-2
 (1688)
larva L3 puffstage 3-6
 (1706)
larva L3 puffstage 7-9
 (1784)
white prepupae new
 (1467)
white prepupae 12hr
 (1265)
white prepupae 24hr
 (1345)
pupae 2d postWPP
 (1168)
pupae 3d postWPP
 (975)
pupae 4d postWPP
 (1082)
adult male 01day
 (875)
adult male 05day
 (937)
adult male 30day
 (1039)
adult female 01day
 (2005)
adult female 05day
 (1933)
adult female 30day
 (2205)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 (1865)
embryo 02-04hr
 (2835)
embryo 04-06hr
 (2620)
embryo 06-08hr
 (2822)
embryo 08-10hr
 (3050)
embryo 10-12hr
 (3882)
embryo 12-14hr
 (2118)
embryo 14-16hr
 (2575)
embryo 16-18hr
 (2266)
embryo 18-20hr
 (2596)
embryo 20-22hr
 (2837)
embryo 22-24hr
 (2362)
larva L1
 (2923)
larva L2
 (2492)
larva L3 12hr old
 (2205)
larva L3 puffstage 1-2
 (1688)
larva L3 puffstage 3-6
 (1706)
larva L3 puffstage 7-9
 (1784)
white prepupae new
 (1467)
white prepupae 12hr
 (1265)
white prepupae 24hr
 (1345)
pupae 2d postWPP
 (1168)
pupae 3d postWPP
 (975)
pupae 4d postWPP
 (1082)
adult male 01day
 (875)
adult male 05day
 (937)
adult male 30day
 (1039)
adult female 01day
 (2005)
adult female 05day
 (1933)
adult female 30day
 (2205)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 1865
embryo 02-04hr
 
 2835
embryo 04-06hr
 
 2620
embryo 06-08hr
 
 2822
embryo 08-10hr
 
 3050
embryo 10-12hr
 
 3882
embryo 12-14hr
 
 2118
embryo 14-16hr
 
 2575
embryo 16-18hr
 
 2266
embryo 18-20hr
 
 2596
embryo 20-22hr
 
 2837
embryo 22-24hr
 
 2362
larva L1
 
 2923
larva L2
 
 2492
larva L3 12hr old
 
 2205
larva L3 puffstage 1-2
 
 1688
larva L3 puffstage 3-6
 
 1706
larva L3 puffstage 7-9
 
 1784
white prepupae new
 
 1467
white prepupae 12hr
 
 1265
white prepupae 24hr
 
 1345
pupae 2d postWPP
 
 1168
pupae 3d postWPP
 
 975
pupae 4d postWPP
 
 1082
adult male 01day
 
 875
adult male 05day
 
 937
adult male 30day
 
 1039
adult female 01day
 
 2005
adult female 05day
 
 1933
adult female 30day
 
 2205
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

modENCODE Temporal Expression Data (Graveley et al., 2011)
hide modENCODE Cell Lines RNA-Seq

modENCODE Cell Line Expression Data

(modENCODE_mRNA-Seq_cell.A)

(modENCODE_mRNA-Seq_cell.B)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Cell Line   Expression Level
Schneider line 2 S2R+
 
 2009
Schneider line 2 Sg4
 
 2374
embryonic 1182-4H
 
 1884
embryonic GM2
 
 1304
embryonic Kc167
 
 1293
embryonic S1
 
 1912
embryonic S3
 
 878
leg disc CME L1
 
 2543
wing disc CME-W2
 
 1379
wing disc ML-DmD8
 
 2599
wing disc ML-DmD9
 
 2497
wing disc ML-DmD16-c3
 
 2090
wing disc ML-DmD21
 
 4720
wing disc ML-DmD32
 
 2378
haltere disc ML-DmD17-c3
 
 1983
eye-antennal disc ML-DmD11
 
 3598
antennal disc ML-DmD20-c5
 
 2492
mixed discs ML-DmD4-c1
 
 2103
CNS ML-DmBG1-c1
 
 2385
CNS ML-DmBG2-c2
 
 1643
tumorous blood cells mbn2
 
 1109
ovary fGS/OSS
 
 1025
ovary OSC
 
 792
ovary OSS
 
 328
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Linear, scaled to Moderate expression
Cell Line   Expression Level
Schneider line 2 S2R+
 (2009)
Schneider line 2 Sg4
 (2374)
embryonic 1182-4H
 (1884)
embryonic GM2
 (1304)
embryonic Kc167
 (1293)
embryonic S1
 (1912)
embryonic S3
 (878)
leg disc CME L1
 (2543)
wing disc CME-W2
 (1379)
wing disc ML-DmD8
 (2599)
wing disc ML-DmD9
 (2497)
wing disc ML-DmD16-c3
 (2090)
wing disc ML-DmD21
 (4720)
wing disc ML-DmD32
 (2378)
haltere disc ML-DmD17-c3
 (1983)
eye-antennal disc ML-DmD11
 (3598)
antennal disc ML-DmD20-c5
 (2492)
mixed discs ML-DmD4-c1
 (2103)
CNS ML-DmBG1-c1
 (2385)
CNS ML-DmBG2-c2
 (1643)
tumorous blood cells mbn2
 (1109)
ovary fGS/OSS
 (1025)
ovary OSC
 (792)
ovary OSS
 (328)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Cell Line   Expression Level
Schneider line 2 S2R+
 (2009)
Schneider line 2 Sg4
 (2374)
embryonic 1182-4H
 (1884)
embryonic GM2
 (1304)
embryonic Kc167
 (1293)
embryonic S1
 (1912)
embryonic S3
 (878)
leg disc CME L1
 (2543)
wing disc CME-W2
 (1379)
wing disc ML-DmD8
 (2599)
wing disc ML-DmD9
 (2497)
wing disc ML-DmD16-c3
 (2090)
wing disc ML-DmD21
 (4720)
wing disc ML-DmD32
 (2378)
haltere disc ML-DmD17-c3
 (1983)
eye-antennal disc ML-DmD11
 (3598)
antennal disc ML-DmD20-c5
 (2492)
mixed discs ML-DmD4-c1
 (2103)
CNS ML-DmBG1-c1
 (2385)
CNS ML-DmBG2-c2
 (1643)
tumorous blood cells mbn2
 (1109)
ovary fGS/OSS
 (1025)
ovary OSC
 (792)
ovary OSS
 (328)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 2009
Schneider line 2 Sg4
 
 2374
embryonic 1182-4H
 
 1884
embryonic GM2
 
 1304
embryonic Kc167
 
 1293
embryonic S1
 
 1912
embryonic S3
 
 878
leg disc CME L1
 
 2543
wing disc CME-W2
 
 1379
wing disc ML-DmD8
 
 2599
wing disc ML-DmD9
 
 2497
wing disc ML-DmD16-c3
 
 2090
wing disc ML-DmD21
 
 4720
wing disc ML-DmD32
 
 2378
haltere disc ML-DmD17-c3
 
 1983
eye-antennal disc ML-DmD11
 
 3598
antennal disc ML-DmD20-c5
 
 2492
mixed discs ML-DmD4-c1
 
 2103
CNS ML-DmBG1-c1
 
 2385
CNS ML-DmBG2-c2
 
 1643
tumorous blood cells mbn2
 
 1109
ovary fGS/OSS
 
 1025
ovary OSC
 
 792
ovary OSS
 
 328
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Cell Line   Expression Level
Schneider line 2 S2R+
 
 2009
Schneider line 2 Sg4
 
 2374
embryonic 1182-4H
 
 1884
embryonic GM2
 
 1304
embryonic Kc167
 
 1293
embryonic S1
 
 1912
embryonic S3
 
 878
leg disc CME L1
 
 2543
wing disc CME-W2
 
 1379
wing disc ML-DmD8
 
 2599
wing disc ML-DmD9
 
 2497
wing disc ML-DmD16-c3
 
 2090
wing disc ML-DmD21
 
 4720
wing disc ML-DmD32
 
 2378
haltere disc ML-DmD17-c3
 
 1983
eye-antennal disc ML-DmD11
 
 3598
antennal disc ML-DmD20-c5
 
 2492
mixed discs ML-DmD4-c1
 
 2103
CNS ML-DmBG1-c1
 
 2385
CNS ML-DmBG2-c2
 
 1643
tumorous blood cells mbn2
 
 1109
ovary fGS/OSS
 
 1025
ovary OSC
 
 792
ovary OSS
 
 328
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to Moderate expression
Cell Line   Expression Level
Schneider line 2 S2R+
 (2009)
Schneider line 2 Sg4
 (2374)
embryonic 1182-4H
 (1884)
embryonic GM2
 (1304)
embryonic Kc167
 (1293)
embryonic S1
 (1912)
embryonic S3
 (878)
leg disc CME L1
 (2543)
wing disc CME-W2
 (1379)
wing disc ML-DmD8
 (2599)
wing disc ML-DmD9
 (2497)
wing disc ML-DmD16-c3
 (2090)
wing disc ML-DmD21
 (4720)
wing disc ML-DmD32
 (2378)
haltere disc ML-DmD17-c3
 (1983)
eye-antennal disc ML-DmD11
 (3598)
antennal disc ML-DmD20-c5
 (2492)
mixed discs ML-DmD4-c1
 (2103)
CNS ML-DmBG1-c1
 (2385)
CNS ML-DmBG2-c2
 (1643)
tumorous blood cells mbn2
 (1109)
ovary fGS/OSS
 (1025)
ovary OSC
 (792)
ovary OSS
 (328)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Cell Line   Expression Level
Schneider line 2 S2R+
 (2009)
Schneider line 2 Sg4
 (2374)
embryonic 1182-4H
 (1884)
embryonic GM2
 (1304)
embryonic Kc167
 (1293)
embryonic S1
 (1912)
embryonic S3
 (878)
leg disc CME L1
 (2543)
wing disc CME-W2
 (1379)
wing disc ML-DmD8
 (2599)
wing disc ML-DmD9
 (2497)
wing disc ML-DmD16-c3
 (2090)
wing disc ML-DmD21
 (4720)
wing disc ML-DmD32
 (2378)
haltere disc ML-DmD17-c3
 (1983)
eye-antennal disc ML-DmD11
 (3598)
antennal disc ML-DmD20-c5
 (2492)
mixed discs ML-DmD4-c1
 (2103)
CNS ML-DmBG1-c1
 (2385)
CNS ML-DmBG2-c2
 (1643)
tumorous blood cells mbn2
 (1109)
ovary fGS/OSS
 (1025)
ovary OSC
 (792)
ovary OSS
 (328)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 2009
Schneider line 2 Sg4
 
 2374
embryonic 1182-4H
 
 1884
embryonic GM2
 
 1304
embryonic Kc167
 
 1293
embryonic S1
 
 1912
embryonic S3
 
 878
leg disc CME L1
 
 2543
wing disc CME-W2
 
 1379
wing disc ML-DmD8
 
 2599
wing disc ML-DmD9
 
 2497
wing disc ML-DmD16-c3
 
 2090
wing disc ML-DmD21
 
 4720
wing disc ML-DmD32
 
 2378
haltere disc ML-DmD17-c3
 
 1983
eye-antennal disc ML-DmD11
 
 3598
antennal disc ML-DmD20-c5
 
 2492
mixed discs ML-DmD4-c1
 
 2103
CNS ML-DmBG1-c1
 
 2385
CNS ML-DmBG2-c2
 
 1643
tumorous blood cells mbn2
 
 1109
ovary fGS/OSS
 
 1025
ovary OSC
 
 792
ovary OSS
 
 328
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Cell Line   Expression Level
Schneider line 2 S2R+
 
 
Schneider line 2 Sg4
 
 
embryonic 1182-4H
 
 
embryonic GM2
 
 
embryonic Kc167
 
 
embryonic S1
 
 
embryonic S3
 
 
leg disc CME L1
 
 
wing disc CME-W2
 
 
wing disc ML-DmD8
 
 
wing disc ML-DmD9
 
 
wing disc ML-DmD16-c3
 
 
wing disc ML-DmD21
 
 
wing disc ML-DmD32
 
 
haltere disc ML-DmD17-c3
 
 
eye-antennal disc ML-DmD11
 
 
antennal disc ML-DmD20-c5
 
 
mixed discs ML-DmD4-c1
 
 
CNS ML-DmBG1-c1
 
 
CNS ML-DmBG2-c2
 
 
tumorous blood cells mbn2
 
 
ovary fGS/OSS
 
 
ovary OSC
 
 
ovary OSS
 
 

hide modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment   Expression Level
extended cold, 4-day adult
 
 806
cold shock, 4-day adult
 
 665
heat shock, 4-day adult
 
 1447
Cadmium 50 mM 6 hrs, larvae L3
 
 1656
Cadmium 50 mM 12 hrs, larvae L3
 
 1440
Cadmium 50 mM 48 hrs, 4-day adult
 
 1213
Cadmium 100 mM 48 hrs, 4-day adult
 
 965
Copper 0.5 mM 12 hrs, larvae L3
 
 1029
Copper 15 mM 48 hrs, 4-day adult
 
 284
Zinc 5 mM 12 hrs, larvae L3
 
 947
Zinc 4.5 mM 48 hrs, 4-day adult
 
 433
Ethanol 2.5% 3 hrs, larvae L3
 
 1444
Ethanol 5% 3 hrs, larvae L3
 
 1423
Ethanol 10% 3 hrs, larvae L3
 
 1438
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 1413
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 1233
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 582
Paraquat 5 mM 48 hrs, 4-day adult
 
 1288
Paraquat 10 mM 48 hrs, 4-day adult
 
 1394
Rotenone 2 μg 12 hrs, larvae L3
 
 1554
Rotenone 8 μg 12 hrs, larvae L3
 
 2096
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Linear, scaled to Moderate expression
Treatment   Expression Level
extended cold, 4-day adult
 (806)
cold shock, 4-day adult
 (665)
heat shock, 4-day adult
 (1447)
Cadmium 50 mM 6 hrs, larvae L3
 (1656)
Cadmium 50 mM 12 hrs, larvae L3
 (1440)
Cadmium 50 mM 48 hrs, 4-day adult
 (1213)
Cadmium 100 mM 48 hrs, 4-day adult
 (965)
Copper 0.5 mM 12 hrs, larvae L3
 (1029)
Copper 15 mM 48 hrs, 4-day adult
 (284)
Zinc 5 mM 12 hrs, larvae L3
 (947)
Zinc 4.5 mM 48 hrs, 4-day adult
 (433)
Ethanol 2.5% 3 hrs, larvae L3
 (1444)
Ethanol 5% 3 hrs, larvae L3
 (1423)
Ethanol 10% 3 hrs, larvae L3
 (1438)
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 (1413)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 (1233)
Caffeine 25 mg/ml 48 hrs, 4-day adult
 (582)
Paraquat 5 mM 48 hrs, 4-day adult
 (1288)
Paraquat 10 mM 48 hrs, 4-day adult
 (1394)
Rotenone 2 μg 12 hrs, larvae L3
 (1554)
Rotenone 8 μg 12 hrs, larvae L3
 (2096)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Treatment   Expression Level
extended cold, 4-day adult
 (806)
cold shock, 4-day adult
 (665)
heat shock, 4-day adult
 (1447)
Cadmium 50 mM 6 hrs, larvae L3
 (1656)
Cadmium 50 mM 12 hrs, larvae L3
 (1440)
Cadmium 50 mM 48 hrs, 4-day adult
 (1213)
Cadmium 100 mM 48 hrs, 4-day adult
 (965)
Copper 0.5 mM 12 hrs, larvae L3
 (1029)
Copper 15 mM 48 hrs, 4-day adult
 (284)
Zinc 5 mM 12 hrs, larvae L3
 (947)
Zinc 4.5 mM 48 hrs, 4-day adult
 (433)
Ethanol 2.5% 3 hrs, larvae L3
 (1444)
Ethanol 5% 3 hrs, larvae L3
 (1423)
Ethanol 10% 3 hrs, larvae L3
 (1438)
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 (1413)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 (1233)
Caffeine 25 mg/ml 48 hrs, 4-day adult
 (582)
Paraquat 5 mM 48 hrs, 4-day adult
 (1288)
Paraquat 10 mM 48 hrs, 4-day adult
 (1394)
Rotenone 2 μg 12 hrs, larvae L3
 (1554)
Rotenone 8 μg 12 hrs, larvae L3
 (2096)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Treatment   Expression Level
extended cold, 4-day adult
 
 806
cold shock, 4-day adult
 
 665
heat shock, 4-day adult
 
 1447
Cadmium 50 mM 6 hrs, larvae L3
 
 1656
Cadmium 50 mM 12 hrs, larvae L3
 
 1440
Cadmium 50 mM 48 hrs, 4-day adult
 
 1213
Cadmium 100 mM 48 hrs, 4-day adult
 
 965
Copper 0.5 mM 12 hrs, larvae L3
 
 1029
Copper 15 mM 48 hrs, 4-day adult
 
 284
Zinc 5 mM 12 hrs, larvae L3
 
 947
Zinc 4.5 mM 48 hrs, 4-day adult
 
 433
Ethanol 2.5% 3 hrs, larvae L3
 
 1444
Ethanol 5% 3 hrs, larvae L3
 
 1423
Ethanol 10% 3 hrs, larvae L3
 
 1438
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 1413
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 1233
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 582
Paraquat 5 mM 48 hrs, 4-day adult
 
 1288
Paraquat 10 mM 48 hrs, 4-day adult
 
 1394
Rotenone 2 μg 12 hrs, larvae L3
 
 1554
Rotenone 8 μg 12 hrs, larvae L3
 
 2096
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Treatment   Expression Level
extended cold, 4-day adult
 
 806
cold shock, 4-day adult
 
 665
heat shock, 4-day adult
 
 1447
Cadmium 50 mM 6 hrs, larvae L3
 
 1656
Cadmium 50 mM 12 hrs, larvae L3
 
 1440
Cadmium 50 mM 48 hrs, 4-day adult
 
 1213
Cadmium 100 mM 48 hrs, 4-day adult
 
 965
Copper 0.5 mM 12 hrs, larvae L3
 
 1029
Copper 15 mM 48 hrs, 4-day adult
 
 284
Zinc 5 mM 12 hrs, larvae L3
 
 947
Zinc 4.5 mM 48 hrs, 4-day adult
 
 433
Ethanol 2.5% 3 hrs, larvae L3
 
 1444
Ethanol 5% 3 hrs, larvae L3
 
 1423
Ethanol 10% 3 hrs, larvae L3
 
 1438
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 1413
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 1233
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 582
Paraquat 5 mM 48 hrs, 4-day adult
 
 1288
Paraquat 10 mM 48 hrs, 4-day adult
 
 1394
Rotenone 2 μg 12 hrs, larvae L3
 
 1554
Rotenone 8 μg 12 hrs, larvae L3
 
 2096
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to Moderate expression
Treatment   Expression Level
extended cold, 4-day adult
 (806)
cold shock, 4-day adult
 (665)
heat shock, 4-day adult
 (1447)
Cadmium 50 mM 6 hrs, larvae L3
 (1656)
Cadmium 50 mM 12 hrs, larvae L3
 (1440)
Cadmium 50 mM 48 hrs, 4-day adult
 (1213)
Cadmium 100 mM 48 hrs, 4-day adult
 (965)
Copper 0.5 mM 12 hrs, larvae L3
 (1029)
Copper 15 mM 48 hrs, 4-day adult
 (284)
Zinc 5 mM 12 hrs, larvae L3
 (947)
Zinc 4.5 mM 48 hrs, 4-day adult
 (433)
Ethanol 2.5% 3 hrs, larvae L3
 (1444)
Ethanol 5% 3 hrs, larvae L3
 (1423)
Ethanol 10% 3 hrs, larvae L3
 (1438)
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 (1413)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 (1233)
Caffeine 25 mg/ml 48 hrs, 4-day adult
 (582)
Paraquat 5 mM 48 hrs, 4-day adult
 (1288)
Paraquat 10 mM 48 hrs, 4-day adult
 (1394)
Rotenone 2 μg 12 hrs, larvae L3
 (1554)
Rotenone 8 μg 12 hrs, larvae L3
 (2096)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Treatment   Expression Level
extended cold, 4-day adult
 (806)
cold shock, 4-day adult
 (665)
heat shock, 4-day adult
 (1447)
Cadmium 50 mM 6 hrs, larvae L3
 (1656)
Cadmium 50 mM 12 hrs, larvae L3
 (1440)
Cadmium 50 mM 48 hrs, 4-day adult
 (1213)
Cadmium 100 mM 48 hrs, 4-day adult
 (965)
Copper 0.5 mM 12 hrs, larvae L3
 (1029)
Copper 15 mM 48 hrs, 4-day adult
 (284)
Zinc 5 mM 12 hrs, larvae L3
 (947)
Zinc 4.5 mM 48 hrs, 4-day adult
 (433)
Ethanol 2.5% 3 hrs, larvae L3
 (1444)
Ethanol 5% 3 hrs, larvae L3
 (1423)
Ethanol 10% 3 hrs, larvae L3
 (1438)
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 (1413)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 (1233)
Caffeine 25 mg/ml 48 hrs, 4-day adult
 (582)
Paraquat 5 mM 48 hrs, 4-day adult
 (1288)
Paraquat 10 mM 48 hrs, 4-day adult
 (1394)
Rotenone 2 μg 12 hrs, larvae L3
 (1554)
Rotenone 8 μg 12 hrs, larvae L3
 (2096)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Treatment   Expression Level
extended cold, 4-day adult
 
 806
cold shock, 4-day adult
 
 665
heat shock, 4-day adult
 
 1447
Cadmium 50 mM 6 hrs, larvae L3
 
 1656
Cadmium 50 mM 12 hrs, larvae L3
 
 1440
Cadmium 50 mM 48 hrs, 4-day adult
 
 1213
Cadmium 100 mM 48 hrs, 4-day adult
 
 965
Copper 0.5 mM 12 hrs, larvae L3
 
 1029
Copper 15 mM 48 hrs, 4-day adult
 
 284
Zinc 5 mM 12 hrs, larvae L3
 
 947
Zinc 4.5 mM 48 hrs, 4-day adult
 
 433
Ethanol 2.5% 3 hrs, larvae L3
 
 1444
Ethanol 5% 3 hrs, larvae L3
 
 1423
Ethanol 10% 3 hrs, larvae L3
 
 1438
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 1413
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 1233
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 582
Paraquat 5 mM 48 hrs, 4-day adult
 
 1288
Paraquat 10 mM 48 hrs, 4-day adult
 
 1394
Rotenone 2 μg 12 hrs, larvae L3
 
 1554
Rotenone 8 μg 12 hrs, larvae L3
 
 2096
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Treatment   Expression Level
extended cold, 4-day adult
 
 
cold shock, 4-day adult
 
 
heat shock, 4-day adult
 
 
Cadmium 50 mM 6 hrs, larvae L3
 
 
Cadmium 50 mM 12 hrs, larvae L3
 
 
Cadmium 50 mM 48 hrs, 4-day adult
 
 
Cadmium 100 mM 48 hrs, 4-day adult
 
 
Copper 0.5 mM 12 hrs, larvae L3
 
 
Copper 15 mM 48 hrs, 4-day adult
 
 
Zinc 5 mM 12 hrs, larvae L3
 
 
Zinc 4.5 mM 48 hrs, 4-day adult
 
 
Ethanol 2.5% 3 hrs, larvae L3
 
 
Ethanol 5% 3 hrs, larvae L3
 
 
Ethanol 10% 3 hrs, larvae L3
 
 
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 
Paraquat 5 mM 48 hrs, 4-day adult
 
 
Paraquat 10 mM 48 hrs, 4-day adult
 
 
Rotenone 2 μg 12 hrs, larvae L3
 
 
Rotenone 8 μg 12 hrs, larvae L3
 
 

hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Sterility
Allele
Phenotype manifest in
Allele
hide Classical Alleles ( 1 )
For All Classical Alleles Show

Allele of RpL7AClassMutagenStocksKnown lesion
RpL7Ae023362 --
hide Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show

Allele of RpL7AClassMutagenStocksKnown lesion
RpL7AGD109341 Yes
RpL7AKK1023721 Yes
RpL7ANIG.3314R0 Yes
hide Aneuploid Aberrations
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
Insertions
Type of insertions
Name
Expression data
miscellaneous insertions
hide Gene Ontology: Function, Process & Cellular Component ( 9 unique terms )
hide Terms Based on Experimental Evidence ( 6 terms )
Molecular Function
CV term
References
Biological Process
CV term
References
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
Cellular Component
CV term
References
inferred from direct assay
hide Terms Based on Predictions or Assertions ( 5 terms )
Molecular Function
CV term
References
inferred from sequence or structural similarity with UniProtKB:P12970
non-traceable author statement
Biological Process
CV term
References
inferred from sequence or structural similarity with UniProtKB:P12970
non-traceable author statement
Cellular Component
CV term
References
inferred from sequence or structural similarity with UniProtKB:P12970
non-traceable author statement
non-traceable author statement
hide Sequence Ontology: Class of Gene
hide Interactions & Pathways
hide Summary of Physical Interactions
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
RpL7A allele
Gene
References
hide External Data
Linkouts
BioGRID - A database of protein and genetic interactions
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
hide OrthoDB Orthologs (92) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
Drosophila inclusive ortholog search
Dipteran inclusive ortholog search
Insect inclusive ortholog search
Arthropod inclusive ortholog search
Metazoa inclusive ortholog search
hideOrthologs in Drosophila Species (EOG6NS3XT)
Organism
Common Name
Gene
AAA Syntenic Ortholog
Multiple Dmel Genes in this Orthologous Group
Drosophila melanogaster
fruit fly 
 
 
Drosophila simulans
 
Y
 
Drosophila sechellia
 
Y
 
Drosophila erecta
 
Y
 
Drosophila yakuba
 
Y
 
Drosophila ananassae
 
Y
 
Drosophila pseudoobscura pseudoobscura
 
Y
 
Drosophila persimilis
 
Y
 
Drosophila willistoni
 
Y
 
Drosophila virilis
 
Y
 
Drosophila mojavensis
 
Y
 
Drosophila grimshawi
 
Y
 
hideOrthologs in non-Drosophila Dipterans (EOG6GHZZ5)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Aedes aegypti
Yellow fever mosquito 
 
Anopheles gambiae
Malaria mosquito 
 
Culex quinquefasciatus
Southern house mosquito 
 
hideOrthologs in non-Dipteran Insects (EOG6ZCS1S)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Apis mellifera
Western honey bee 
Amel\RpL7A
 
Nasonia vitripennis
Parasitic wasp 
Nvit\Nasvi2EG018124
 
Acromyrmex echinatior
Panamanian leafcutter ant 
Aech\AECH22685
 
Atta cephalotes
Leafcutter ant 
Acep\ACEP15612
 
Camponotus floridanus
Florida carpenter ant 
Cflo\CFLO23436
 
Harpegnathos saltator
Jerdons jumping ant 
Hsal\HSAL12631
 
Harpegnathos saltator
Jerdons jumping ant 
Hsal\HSAL11255
 
Linepithema humile
Argentine ant 
Lhum\LH14018
 
Pogonomyrmex barbatus
Red harvester ant 
Pbar\PB23187
 
Solenopsis invicta
Red fire ant 
Sinv\SINV25808
 
Acyrthosiphon pisum
Pea aphid 
 
Bombyx mori
Silkmoth 
 
Tribolium castaneum
Red flour beetle 
 
hideOrthologs in non-Insect Arthropods (EOG6G79FM)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Daphnia pulex
Water flea 
 
Ixodes scapularis
Deer tick 
 
Ixodes scapularis
Deer tick 
 
hideOrthologs in non-Arthropod Metazoa (EOG6XHBTV)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Caenorhabditis elegans
Nematode 
 
Caenorhabditis elegans
Nematode 
 
Strongylocentrotus purpuratus
Purple sea urchin 
 
Danio rerio
Zebrafish 
 
Xenopus tropicalis
Western clawed frog 
 
Gallus gallus
Domestic chicken 
 
Mus musculus
House mouse 
 
Mus musculus
House mouse 
 
Mus musculus
House mouse 
 
Mus musculus
House mouse 
 
Mus musculus
House mouse 
 
Mus musculus
House mouse 
 
Mus musculus
House mouse 
 
Mus musculus
House mouse 
 
Mus musculus
House mouse 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Homo sapiens
Human 
 
hide Human Orthologs (1)
Gene
OMIM
HGNC
hideAAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism
Gene
Drosophila simulans
Drosophila sechellia
Drosophila erecta
Drosophila yakuba
Drosophila ananassae
Drosophila pseudoobscura pseudoobscura
Drosophila persimilis
Drosophila willistoni
Drosophila virilis
Drosophila mojavensis
Drosophila grimshawi
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 4 )
Bloomington
Harvard
VDRC
hide Genomic Clones ( 2 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 970 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
hide RNAi & Array Information
Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
hide Antibody Information
hide Other Information
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hide Identification
hide Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
"RpL7A" likely corresponds to "M(1)5D6A".
hide Other Comments
RNAi screen using dsRNA made from templates generated with primers directed against this gene results in aberrantly short, monopolar spindles when assayed in S2 cells. This phenotype can be observed when the screen is performed with or without Cdc27 dsRNA.
Likely Minute gene.
Deletions removing RpL7A but no other cytoplasmic ribosomal protein-encoding genes show Minute phenotypes.
RNAi generated by PCR using primers directed to this gene causes a cell growth and viability phenotype when assayed in Kc167 and S2R+ cells.
Isolated using a mouse Surf-3/rpL7a cDNA as a probe, under low stringency conditions.
The genomic organisation of the RpL7A locus has been analysed.
The RpL7A transcription unit was identified during a molecular analysis of the dx region.
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Linkouts
BioGRID - A database of protein and genetic interactions
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
hide Synonyms & Secondary IDs ( 8 )
Reported As
Symbol Synonym
Surf3/rpL7a
Surf-3/rpL7a
Name Synonym
Secondary FlyBase IDs
hide References ( 36 )
Generate a list of
List References by type
hide Recent research papers ( 6 )
Cook et al., 2012, Genome Biol. 13(3): R21
The generation of chromosomal deletions to provide extensive coverage and subdivision of the Drosophila melanogaster genome. [FBrf0219066]
Fischer et al., 2012, Proc. Biol. Sci. 279(1738): 2636--2644
Conserved properties of Drosophila and human spermatozoal mRNA repertoires. [FBrf0218415]
Yano et al., 2012, J. Neurogenet. 26(1): 53--63
Identification of proteasome components required for apical localization of chaoptin using functional genomics. [FBrf0217843]
Booker et al., 2011, BMC Genomics 12: 50
False negative rates in Drosophila cell-based RNAi screens: a case study. [FBrf0212969]
Casad et al., 2011, Genetics 189(3): 861--870
Cardiomyopathy Is Associated with Ribosomal Protein Gene Haplo-Insufficiency in Drosophila melanogaster. [FBrf0216591]
Davis et al., 2011, BMC Dev. Biol. 11: 66
Identification of common and cell type specific LXXLL motif EcR cofactors using a bioinformatics refined candidate RNAi screen in Drosophila melanogaster cell lines. [FBrf0216830]