General Information Symbol Dmel\ RpL7ASpecies D. melanogaster Name Ribosomal protein L7A Annotation symbol CG3314 Feature type protein_coding_gene FlyBase ID FBgn0014026 Gene Model Status Current Stock availability 4 publicly
available Also Known As L7a Genomic Location Chromosome (arm) X Recombination map 1- Cytogenetic map 6B1-6B1 Sequence location X:6,425,049..6,427,318 [-]
Genomic Maps
Summary Information Automatically generated summary
See sections below for more information The gene
Ribosomal protein L7A is referred to in FlyBase by the symbol
Dmel\RpL7A (CG3314, FBgn0014026). It is a protein_coding_gene from
Drosophila melanogaster . There is experimental evidence that it has the
molecular function : structural constituent of ribosome. There is experimental evidence that it is involved in the
biological process : centrosome organization; mitotic spindle elongation; mitotic spindle organization; centrosome duplication.
4 alleles are reported . No phenotypic data is available. It has
2 annotated transcripts and
2 annotated polypeptides .
Protein features are: Ribosomal protein L7A/L8; Ribosomal protein L7Ae conserved site; Ribosomal protein L7Ae/L30e/S12e/Gadd45; Ribosomal protein L7Ae/L8/Nhp2 family. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of very high expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, during early pupal stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: High levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1639893_s_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of RpL7A. Gene sequence location is
X:6425049..6427318 .
User Contributed Data
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Detailed Mapping Data
FlyBase Computed Cytological Location
Experimentally Determined Cytological Location
6A-6B
(determined by in situ hybridisation)
Experimentally Determined Recombination Data
Location Left of (cM) Right of (cM) Notes Gene Model & Products Comments on Gene
Model Gene model reviewed during 5.39
Transcript Data Annotated Transcripts Additional Transcript Data
& Comments Reported size (kB) Comments External Data Crossreferences
Polypeptide Data Annotated
Polypeptides Additional Polypeptide
Data & Comments Reported size (kDa) Comments External Data Linkouts Crossreferences
domains - A database of protein families, domains, and functional sites
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank UniProtKB/Swiss-Prot UniProtKB/TrEMBL Mapped Features Mapped Features have been reorganized, please
see this article for details. Additional mapped features and mutations can
be found on GBrowse or related reports. External Data Linkouts Crossreferences Expression Data Transcript Expression
Additional Descriptive Data
RpL7A transcripts accumulate to high levels at all stages of development.
Marker for Subcellular Localization CV Term Polypeptide Expression
Additional Descriptive Data
Marker for Subcellular Localization (GO Cellular Component) inferred from direct assay
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference
FlyAtlas Anatomy Microarray
Linear, scaled to maximum expression level
Tissue
Expression Level
Larval Central Nervous System
2555.65
Larval Midgut
3303.6
Larval Hindgut
3728.8
Larval Malpighian Tubules
4113.3
Larval Fat Body
5670.1
Larval Salivary Gland
6158
Larval Trachea
5193.075
Larval Carcass
3264.175
Adult Head
3435.2
Adult Eye
5695.675
Adult Brain
2259.9
Adult Thoracic-Abdominal Ganglion
3294.8
Adult Crop
5360.2
Adult Midgut
3975.3
Adult Hindgut
4007.3
Adult Malpighian Tubules
3910.7
Adult Fat Body
4691.4
Adult Salivary Gland
8806
Adult Heart
4911.7
Adult VirginFemale Spermatheca
4970.8
Adult InseminatedFemale Spermatheca
5022.3
Adult Ovary
2918.7
Adult Testis
554.6
Adult Male Accessory Gland
7159.7
Adult Carcass
4337.9
Expression Level Scale
None
Low
Moderate
High
Very high
Linear, scaled to Moderate expression
Tissue
Expression Level
Larval Central Nervous System
(2555.65)
Larval Midgut
(3303.6)
Larval Hindgut
(3728.8)
Larval Malpighian Tubules
(4113.3)
Larval Fat Body
(5670.1)
Larval Salivary Gland
(6158)
Larval Trachea
(5193.075)
Larval Carcass
(3264.175)
Adult Head
(3435.2)
Adult Eye
(5695.675)
Adult Brain
(2259.9)
Adult Thoracic-Abdominal Ganglion
(3294.8)
Adult Crop
(5360.2)
Adult Midgut
(3975.3)
Adult Hindgut
(4007.3)
Adult Malpighian Tubules
(3910.7)
Adult Fat Body
(4691.4)
Adult Salivary Gland
(8806)
Adult Heart
(4911.7)
Adult VirginFemale Spermatheca
(4970.8)
Adult InseminatedFemale Spermatheca
(5022.3)
Adult Ovary
(2918.7)
Adult Testis
(554.6)
Adult Male Accessory Gland
(7159.7)
Adult Carcass
(4337.9)
Expression Level Scale
None
Low
Moderate
High
Linear, scaled to High level expression
Tissue
Expression Level
Larval Central Nervous System
(2555.65)
Larval Midgut
(3303.6)
Larval Hindgut
(3728.8)
Larval Malpighian Tubules
(4113.3)
Larval Fat Body
(5670.1)
Larval Salivary Gland
(6158)
Larval Trachea
(5193.075)
Larval Carcass
(3264.175)
Adult Head
(3435.2)
Adult Eye
(5695.675)
Adult Brain
(2259.9)
Adult Thoracic-Abdominal Ganglion
(3294.8)
Adult Crop
(5360.2)
Adult Midgut
(3975.3)
Adult Hindgut
(4007.3)
Adult Malpighian Tubules
(3910.7)
Adult Fat Body
(4691.4)
Adult Salivary Gland
(8806)
Adult Heart
(4911.7)
Adult VirginFemale Spermatheca
(4970.8)
Adult InseminatedFemale Spermatheca
(5022.3)
Adult Ovary
(2918.7)
Adult Testis
554.6
Adult Male Accessory Gland
(7159.7)
Adult Carcass
(4337.9)
Expression Level Scale
None
Low
Moderate
High
Very high
Linear, scaled to Very high expression
Tissue
Expression Level
Larval Central Nervous System
2555.65
Larval Midgut
3303.6
Larval Hindgut
3728.8
Larval Malpighian Tubules
4113.3
Larval Fat Body
5670.1
Larval Salivary Gland
6158
Larval Trachea
5193.075
Larval Carcass
3264.175
Adult Head
3435.2
Adult Eye
5695.675
Adult Brain
2259.9
Adult Thoracic-Abdominal Ganglion
3294.8
Adult Crop
5360.2
Adult Midgut
3975.3
Adult Hindgut
4007.3
Adult Malpighian Tubules
3910.7
Adult Fat Body
4691.4
Adult Salivary Gland
8806
Adult Heart
4911.7
Adult VirginFemale Spermatheca
4970.8
Adult InseminatedFemale Spermatheca
5022.3
Adult Ovary
2918.7
Adult Testis
554.6
Adult Male Accessory Gland
7159.7
Adult Carcass
4337.9
Expression Level Scale
Very high
log, scaled to maximum expression level
Tissue
Expression Level
Larval Central Nervous System
2555.65
Larval Midgut
3303.6
Larval Hindgut
3728.8
Larval Malpighian Tubules
4113.3
Larval Fat Body
5670.1
Larval Salivary Gland
6158
Larval Trachea
5193.075
Larval Carcass
3264.175
Adult Head
3435.2
Adult Eye
5695.675
Adult Brain
2259.9
Adult Thoracic-Abdominal Ganglion
3294.8
Adult Crop
5360.2
Adult Midgut
3975.3
Adult Hindgut
4007.3
Adult Malpighian Tubules
3910.7
Adult Fat Body
4691.4
Adult Salivary Gland
8806
Adult Heart
4911.7
Adult VirginFemale Spermatheca
4970.8
Adult InseminatedFemale Spermatheca
5022.3
Adult Ovary
2918.7
Adult Testis
554.6
Adult Male Accessory Gland
7159.7
Adult Carcass
4337.9
Expression Level Scale
None
Low
Moderate
High
Very high
log, scaled to Moderate expression
Tissue
Expression Level
Larval Central Nervous System
(2555.65)
Larval Midgut
(3303.6)
Larval Hindgut
(3728.8)
Larval Malpighian Tubules
(4113.3)
Larval Fat Body
(5670.1)
Larval Salivary Gland
(6158)
Larval Trachea
(5193.075)
Larval Carcass
(3264.175)
Adult Head
(3435.2)
Adult Eye
(5695.675)
Adult Brain
(2259.9)
Adult Thoracic-Abdominal Ganglion
(3294.8)
Adult Crop
(5360.2)
Adult Midgut
(3975.3)
Adult Hindgut
(4007.3)
Adult Malpighian Tubules
(3910.7)
Adult Fat Body
(4691.4)
Adult Salivary Gland
(8806)
Adult Heart
(4911.7)
Adult VirginFemale Spermatheca
(4970.8)
Adult InseminatedFemale Spermatheca
(5022.3)
Adult Ovary
(2918.7)
Adult Testis
554.6
Adult Male Accessory Gland
(7159.7)
Adult Carcass
(4337.9)
Expression Level Scale
None
Low
Moderate
High
log, scaled to High level expression
Tissue
Expression Level
Larval Central Nervous System
(2555.65)
Larval Midgut
(3303.6)
Larval Hindgut
(3728.8)
Larval Malpighian Tubules
(4113.3)
Larval Fat Body
(5670.1)
Larval Salivary Gland
(6158)
Larval Trachea
(5193.075)
Larval Carcass
(3264.175)
Adult Head
(3435.2)
Adult Eye
(5695.675)
Adult Brain
(2259.9)
Adult Thoracic-Abdominal Ganglion
(3294.8)
Adult Crop
(5360.2)
Adult Midgut
(3975.3)
Adult Hindgut
(4007.3)
Adult Malpighian Tubules
(3910.7)
Adult Fat Body
(4691.4)
Adult Salivary Gland
(8806)
Adult Heart
(4911.7)
Adult VirginFemale Spermatheca
(4970.8)
Adult InseminatedFemale Spermatheca
(5022.3)
Adult Ovary
(2918.7)
Adult Testis
554.6
Adult Male Accessory Gland
(7159.7)
Adult Carcass
(4337.9)
Expression Level Scale
None
Low
Moderate
High
Very high
log, scaled to Very high expression
Tissue
Expression Level
Larval Central Nervous System
2555.65
Larval Midgut
3303.6
Larval Hindgut
3728.8
Larval Malpighian Tubules
4113.3
Larval Fat Body
5670.1
Larval Salivary Gland
6158
Larval Trachea
5193.075
Larval Carcass
3264.175
Adult Head
3435.2
Adult Eye
5695.675
Adult Brain
2259.9
Adult Thoracic-Abdominal Ganglion
3294.8
Adult Crop
5360.2
Adult Midgut
3975.3
Adult Hindgut
4007.3
Adult Malpighian Tubules
3910.7
Adult Fat Body
4691.4
Adult Salivary Gland
8806
Adult Heart
4911.7
Adult VirginFemale Spermatheca
4970.8
Adult InseminatedFemale Spermatheca
5022.3
Adult Ovary
2918.7
Adult Testis
554.6
Adult Male Accessory Gland
7159.7
Adult Carcass
4337.9
Expression Level Scale
None
Low
Moderate
High
Very high
Heatmap
Tissue
Expression Level
Larval Central Nervous System
Larval Midgut
Larval Hindgut
Larval Malpighian Tubules
Larval Fat Body
Larval Salivary Gland
Larval Trachea
Larval Carcass
Adult Head
Adult Eye
Adult Brain
Adult Thoracic-Abdominal Ganglion
Adult Crop
Adult Midgut
Adult Hindgut
Adult Malpighian Tubules
Adult Fat Body
Adult Salivary Gland
Adult Heart
Adult VirginFemale Spermatheca
Adult InseminatedFemale Spermatheca
Adult Ovary
Adult Testis
Adult Male Accessory Gland
Adult Carcass
FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level
Tissue
Adult Expression Level
NA
Head
3435.2
NA
Eye
5695.675
NA
Brain
2259.9
2555.65
Central Nervous System
NA
NA
Thoracic-Abdominal Ganglion
3294.8
NA
Crop
5360.2
3303.6
Midgut
3975.3
3728.8
Hindgut
4007.3
4113.3
Malpighian Tubules
3910.7
5670.1
Fat Body
4691.4
6158
Salivary Gland
8806
NA
Heart
4911.7
5193.075
Trachea
NA
NA
VirginFemale Spermatheca
4970.8
NA
InseminatedFemale Spermatheca
5022.3
NA
Ovary
2918.7
NA
Testis
554.6
NA
Male Accessory Gland
7159.7
3264.175
Carcass
4337.9
modENCODE Anatomy RNA-Seq
Linear, scaled to maximum expression level
Tissue
Expression Level
imaginal disc, larvae L3 wandering
1808
central nervous system, larvae L3
1193
central nervous system, pupae P8
459
head, virgin 1-day female
682
head, virgin 4-day female
1047
head, virgin 20-day female
1339
head, mated 1-day female
631
head, mated 4-day female
729
head, mated 20-day female
1030
head, mated 1-day male
695
head, mated 4-day male
610
head, mated 20-day male
752
salivary gland, larvae L3 wandering
685
salivary gland, white prepupae
1496
digestive system, larvae L3 wandering
960
digestive system, 1-day adult
797
digestive system, 4-day adult
697
digestive system, 20-day adult
827
fat body, larvae L3 wandering
837
fat body, white prepupae
552
fat body, pupae P8
950
carcass, larvae L3 wandering
1378
carcass, 1-day adult
651
carcass, 4-day adult
748
carcass, 20-day adult
1107
ovary, virgin 4-day female
1120
ovary, mated 4-day female
1003
testis, mated 4-day male
467
accessory gland, mated 4-day male
997
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
Linear, scaled to Moderate expression
Tissue
Expression Level
imaginal disc, larvae L3 wandering
(1808)
central nervous system, larvae L3
(1193)
central nervous system, pupae P8
(459)
head, virgin 1-day female
(682)
head, virgin 4-day female
(1047)
head, virgin 20-day female
(1339)
head, mated 1-day female
(631)
head, mated 4-day female
(729)
head, mated 20-day female
(1030)
head, mated 1-day male
(695)
head, mated 4-day male
(610)
head, mated 20-day male
(752)
salivary gland, larvae L3 wandering
(685)
salivary gland, white prepupae
(1496)
digestive system, larvae L3 wandering
(960)
digestive system, 1-day adult
(797)
digestive system, 4-day adult
(697)
digestive system, 20-day adult
(827)
fat body, larvae L3 wandering
(837)
fat body, white prepupae
(552)
fat body, pupae P8
(950)
carcass, larvae L3 wandering
(1378)
carcass, 1-day adult
(651)
carcass, 4-day adult
(748)
carcass, 20-day adult
(1107)
ovary, virgin 4-day female
(1120)
ovary, mated 4-day female
(1003)
testis, mated 4-day male
(467)
accessory gland, mated 4-day male
(997)
Expression Level Scale
Very low
Low
Moderate
Moderately high
Linear, scaled to High expression
Tissue
Expression Level
imaginal disc, larvae L3 wandering
(1808)
central nervous system, larvae L3
(1193)
central nervous system, pupae P8
(459)
head, virgin 1-day female
(682)
head, virgin 4-day female
(1047)
head, virgin 20-day female
(1339)
head, mated 1-day female
(631)
head, mated 4-day female
(729)
head, mated 20-day female
(1030)
head, mated 1-day male
(695)
head, mated 4-day male
(610)
head, mated 20-day male
(752)
salivary gland, larvae L3 wandering
(685)
salivary gland, white prepupae
(1496)
digestive system, larvae L3 wandering
(960)
digestive system, 1-day adult
(797)
digestive system, 4-day adult
(697)
digestive system, 20-day adult
(827)
fat body, larvae L3 wandering
(837)
fat body, white prepupae
(552)
fat body, pupae P8
(950)
carcass, larvae L3 wandering
(1378)
carcass, 1-day adult
(651)
carcass, 4-day adult
(748)
carcass, 20-day adult
(1107)
ovary, virgin 4-day female
(1120)
ovary, mated 4-day female
(1003)
testis, mated 4-day male
(467)
accessory gland, mated 4-day male
(997)
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Linear, scaled to Extremely high expression
Tissue
Expression Level
imaginal disc, larvae L3 wandering
1808
central nervous system, larvae L3
1193
central nervous system, pupae P8
459
head, virgin 1-day female
682
head, virgin 4-day female
1047
head, virgin 20-day female
1339
head, mated 1-day female
631
head, mated 4-day female
729
head, mated 20-day female
1030
head, mated 1-day male
695
head, mated 4-day male
610
head, mated 20-day male
752
salivary gland, larvae L3 wandering
685
salivary gland, white prepupae
1496
digestive system, larvae L3 wandering
960
digestive system, 1-day adult
797
digestive system, 4-day adult
697
digestive system, 20-day adult
827
fat body, larvae L3 wandering
837
fat body, white prepupae
552
fat body, pupae P8
950
carcass, larvae L3 wandering
1378
carcass, 1-day adult
651
carcass, 4-day adult
748
carcass, 20-day adult
1107
ovary, virgin 4-day female
1120
ovary, mated 4-day female
1003
testis, mated 4-day male
467
accessory gland, mated 4-day male
997
Expression Level Scale
Extremely high
log, scaled to maximum expression level
Tissue
Expression Level
imaginal disc, larvae L3 wandering
1808
central nervous system, larvae L3
1193
central nervous system, pupae P8
459
head, virgin 1-day female
682
head, virgin 4-day female
1047
head, virgin 20-day female
1339
head, mated 1-day female
631
head, mated 4-day female
729
head, mated 20-day female
1030
head, mated 1-day male
695
head, mated 4-day male
610
head, mated 20-day male
752
salivary gland, larvae L3 wandering
685
salivary gland, white prepupae
1496
digestive system, larvae L3 wandering
960
digestive system, 1-day adult
797
digestive system, 4-day adult
697
digestive system, 20-day adult
827
fat body, larvae L3 wandering
837
fat body, white prepupae
552
fat body, pupae P8
950
carcass, larvae L3 wandering
1378
carcass, 1-day adult
651
carcass, 4-day adult
748
carcass, 20-day adult
1107
ovary, virgin 4-day female
1120
ovary, mated 4-day female
1003
testis, mated 4-day male
467
accessory gland, mated 4-day male
997
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
log, scaled to Moderate expression
Tissue
Expression Level
imaginal disc, larvae L3 wandering
(1808)
central nervous system, larvae L3
(1193)
central nervous system, pupae P8
(459)
head, virgin 1-day female
(682)
head, virgin 4-day female
(1047)
head, virgin 20-day female
(1339)
head, mated 1-day female
(631)
head, mated 4-day female
(729)
head, mated 20-day female
(1030)
head, mated 1-day male
(695)
head, mated 4-day male
(610)
head, mated 20-day male
(752)
salivary gland, larvae L3 wandering
(685)
salivary gland, white prepupae
(1496)
digestive system, larvae L3 wandering
(960)
digestive system, 1-day adult
(797)
digestive system, 4-day adult
(697)
digestive system, 20-day adult
(827)
fat body, larvae L3 wandering
(837)
fat body, white prepupae
(552)
fat body, pupae P8
(950)
carcass, larvae L3 wandering
(1378)
carcass, 1-day adult
(651)
carcass, 4-day adult
(748)
carcass, 20-day adult
(1107)
ovary, virgin 4-day female
(1120)
ovary, mated 4-day female
(1003)
testis, mated 4-day male
(467)
accessory gland, mated 4-day male
(997)
Expression Level Scale
Very low
Low
Moderate
Moderately high
log, scaled to High expression
Tissue
Expression Level
imaginal disc, larvae L3 wandering
(1808)
central nervous system, larvae L3
(1193)
central nervous system, pupae P8
(459)
head, virgin 1-day female
(682)
head, virgin 4-day female
(1047)
head, virgin 20-day female
(1339)
head, mated 1-day female
(631)
head, mated 4-day female
(729)
head, mated 20-day female
(1030)
head, mated 1-day male
(695)
head, mated 4-day male
(610)
head, mated 20-day male
(752)
salivary gland, larvae L3 wandering
(685)
salivary gland, white prepupae
(1496)
digestive system, larvae L3 wandering
(960)
digestive system, 1-day adult
(797)
digestive system, 4-day adult
(697)
digestive system, 20-day adult
(827)
fat body, larvae L3 wandering
(837)
fat body, white prepupae
(552)
fat body, pupae P8
(950)
carcass, larvae L3 wandering
(1378)
carcass, 1-day adult
(651)
carcass, 4-day adult
(748)
carcass, 20-day adult
(1107)
ovary, virgin 4-day female
(1120)
ovary, mated 4-day female
(1003)
testis, mated 4-day male
(467)
accessory gland, mated 4-day male
(997)
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
log, scaled to Extremely high expression
Tissue
Expression Level
imaginal disc, larvae L3 wandering
1808
central nervous system, larvae L3
1193
central nervous system, pupae P8
459
head, virgin 1-day female
682
head, virgin 4-day female
1047
head, virgin 20-day female
1339
head, mated 1-day female
631
head, mated 4-day female
729
head, mated 20-day female
1030
head, mated 1-day male
695
head, mated 4-day male
610
head, mated 20-day male
752
salivary gland, larvae L3 wandering
685
salivary gland, white prepupae
1496
digestive system, larvae L3 wandering
960
digestive system, 1-day adult
797
digestive system, 4-day adult
697
digestive system, 20-day adult
827
fat body, larvae L3 wandering
837
fat body, white prepupae
552
fat body, pupae P8
950
carcass, larvae L3 wandering
1378
carcass, 1-day adult
651
carcass, 4-day adult
748
carcass, 20-day adult
1107
ovary, virgin 4-day female
1120
ovary, mated 4-day female
1003
testis, mated 4-day male
467
accessory gland, mated 4-day male
997
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
Heatmap
Tissue
Expression Level
imaginal disc, larvae L3 wandering
central nervous system, larvae L3
central nervous system, pupae P8
head, virgin 1-day female
head, virgin 4-day female
head, virgin 20-day female
head, mated 1-day female
head, mated 4-day female
head, mated 20-day female
head, mated 1-day male
head, mated 4-day male
head, mated 20-day male
salivary gland, larvae L3 wandering
salivary gland, white prepupae
digestive system, larvae L3 wandering
digestive system, 1-day adult
digestive system, 4-day adult
digestive system, 20-day adult
fat body, larvae L3 wandering
fat body, white prepupae
fat body, pupae P8
carcass, larvae L3 wandering
carcass, 1-day adult
carcass, 4-day adult
carcass, 20-day adult
ovary, virgin 4-day female
ovary, mated 4-day female
testis, mated 4-day male
accessory gland, mated 4-day male
modENCODE Development RNA-Seq
Linear, scaled to maximum expression level
Developmental Stage
Expression Level
embryo 00-02hr
1865
embryo 02-04hr
2835
embryo 04-06hr
2620
embryo 06-08hr
2822
embryo 08-10hr
3050
embryo 10-12hr
3882
embryo 12-14hr
2118
embryo 14-16hr
2575
embryo 16-18hr
2266
embryo 18-20hr
2596
embryo 20-22hr
2837
embryo 22-24hr
2362
larva L1
2923
larva L2
2492
larva L3 12hr old
2205
larva L3 puffstage 1-2
1688
larva L3 puffstage 3-6
1706
larva L3 puffstage 7-9
1784
white prepupae new
1467
white prepupae 12hr
1265
white prepupae 24hr
1345
pupae 2d postWPP
1168
pupae 3d postWPP
975
pupae 4d postWPP
1082
adult male 01day
875
adult male 05day
937
adult male 30day
1039
adult female 01day
2005
adult female 05day
1933
adult female 30day
2205
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
Linear, scaled to Moderate expression
Developmental Stage
Expression Level
embryo 00-02hr
(1865)
embryo 02-04hr
(2835)
embryo 04-06hr
(2620)
embryo 06-08hr
(2822)
embryo 08-10hr
(3050)
embryo 10-12hr
(3882)
embryo 12-14hr
(2118)
embryo 14-16hr
(2575)
embryo 16-18hr
(2266)
embryo 18-20hr
(2596)
embryo 20-22hr
(2837)
embryo 22-24hr
(2362)
larva L1
(2923)
larva L2
(2492)
larva L3 12hr old
(2205)
larva L3 puffstage 1-2
(1688)
larva L3 puffstage 3-6
(1706)
larva L3 puffstage 7-9
(1784)
white prepupae new
(1467)
white prepupae 12hr
(1265)
white prepupae 24hr
(1345)
pupae 2d postWPP
(1168)
pupae 3d postWPP
(975)
pupae 4d postWPP
(1082)
adult male 01day
(875)
adult male 05day
(937)
adult male 30day
(1039)
adult female 01day
(2005)
adult female 05day
(1933)
adult female 30day
(2205)
Expression Level Scale
Very low
Low
Moderate
Moderately high
Linear, scaled to High expression
Developmental Stage
Expression Level
embryo 00-02hr
(1865)
embryo 02-04hr
(2835)
embryo 04-06hr
(2620)
embryo 06-08hr
(2822)
embryo 08-10hr
(3050)
embryo 10-12hr
(3882)
embryo 12-14hr
(2118)
embryo 14-16hr
(2575)
embryo 16-18hr
(2266)
embryo 18-20hr
(2596)
embryo 20-22hr
(2837)
embryo 22-24hr
(2362)
larva L1
(2923)
larva L2
(2492)
larva L3 12hr old
(2205)
larva L3 puffstage 1-2
(1688)
larva L3 puffstage 3-6
(1706)
larva L3 puffstage 7-9
(1784)
white prepupae new
(1467)
white prepupae 12hr
(1265)
white prepupae 24hr
(1345)
pupae 2d postWPP
(1168)
pupae 3d postWPP
(975)
pupae 4d postWPP
(1082)
adult male 01day
(875)
adult male 05day
(937)
adult male 30day
(1039)
adult female 01day
(2005)
adult female 05day
(1933)
adult female 30day
(2205)
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Linear, scaled to Extremely high expression
Developmental Stage
Expression Level
embryo 00-02hr
1865
embryo 02-04hr
2835
embryo 04-06hr
2620
embryo 06-08hr
2822
embryo 08-10hr
3050
embryo 10-12hr
3882
embryo 12-14hr
2118
embryo 14-16hr
2575
embryo 16-18hr
2266
embryo 18-20hr
2596
embryo 20-22hr
2837
embryo 22-24hr
2362
larva L1
2923
larva L2
2492
larva L3 12hr old
2205
larva L3 puffstage 1-2
1688
larva L3 puffstage 3-6
1706
larva L3 puffstage 7-9
1784
white prepupae new
1467
white prepupae 12hr
1265
white prepupae 24hr
1345
pupae 2d postWPP
1168
pupae 3d postWPP
975
pupae 4d postWPP
1082
adult male 01day
875
adult male 05day
937
adult male 30day
1039
adult female 01day
2005
adult female 05day
1933
adult female 30day
2205
Expression Level Scale
Extremely high
log, scaled to maximum expression level
Developmental Stage
Expression Level
embryo 00-02hr
1865
embryo 02-04hr
2835
embryo 04-06hr
2620
embryo 06-08hr
2822
embryo 08-10hr
3050
embryo 10-12hr
3882
embryo 12-14hr
2118
embryo 14-16hr
2575
embryo 16-18hr
2266
embryo 18-20hr
2596
embryo 20-22hr
2837
embryo 22-24hr
2362
larva L1
2923
larva L2
2492
larva L3 12hr old
2205
larva L3 puffstage 1-2
1688
larva L3 puffstage 3-6
1706
larva L3 puffstage 7-9
1784
white prepupae new
1467
white prepupae 12hr
1265
white prepupae 24hr
1345
pupae 2d postWPP
1168
pupae 3d postWPP
975
pupae 4d postWPP
1082
adult male 01day
875
adult male 05day
937
adult male 30day
1039
adult female 01day
2005
adult female 05day
1933
adult female 30day
2205
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
log, scaled to Moderate expression
Developmental Stage
Expression Level
embryo 00-02hr
(1865)
embryo 02-04hr
(2835)
embryo 04-06hr
(2620)
embryo 06-08hr
(2822)
embryo 08-10hr
(3050)
embryo 10-12hr
(3882)
embryo 12-14hr
(2118)
embryo 14-16hr
(2575)
embryo 16-18hr
(2266)
embryo 18-20hr
(2596)
embryo 20-22hr
(2837)
embryo 22-24hr
(2362)
larva L1
(2923)
larva L2
(2492)
larva L3 12hr old
(2205)
larva L3 puffstage 1-2
(1688)
larva L3 puffstage 3-6
(1706)
larva L3 puffstage 7-9
(1784)
white prepupae new
(1467)
white prepupae 12hr
(1265)
white prepupae 24hr
(1345)
pupae 2d postWPP
(1168)
pupae 3d postWPP
(975)
pupae 4d postWPP
(1082)
adult male 01day
(875)
adult male 05day
(937)
adult male 30day
(1039)
adult female 01day
(2005)
adult female 05day
(1933)
adult female 30day
(2205)
Expression Level Scale
Very low
Low
Moderate
Moderately high
log, scaled to High expression
Developmental Stage
Expression Level
embryo 00-02hr
(1865)
embryo 02-04hr
(2835)
embryo 04-06hr
(2620)
embryo 06-08hr
(2822)
embryo 08-10hr
(3050)
embryo 10-12hr
(3882)
embryo 12-14hr
(2118)
embryo 14-16hr
(2575)
embryo 16-18hr
(2266)
embryo 18-20hr
(2596)
embryo 20-22hr
(2837)
embryo 22-24hr
(2362)
larva L1
(2923)
larva L2
(2492)
larva L3 12hr old
(2205)
larva L3 puffstage 1-2
(1688)
larva L3 puffstage 3-6
(1706)
larva L3 puffstage 7-9
(1784)
white prepupae new
(1467)
white prepupae 12hr
(1265)
white prepupae 24hr
(1345)
pupae 2d postWPP
(1168)
pupae 3d postWPP
(975)
pupae 4d postWPP
(1082)
adult male 01day
(875)
adult male 05day
(937)
adult male 30day
(1039)
adult female 01day
(2005)
adult female 05day
(1933)
adult female 30day
(2205)
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
log, scaled to Extremely high expression
Developmental Stage
Expression Level
embryo 00-02hr
1865
embryo 02-04hr
2835
embryo 04-06hr
2620
embryo 06-08hr
2822
embryo 08-10hr
3050
embryo 10-12hr
3882
embryo 12-14hr
2118
embryo 14-16hr
2575
embryo 16-18hr
2266
embryo 18-20hr
2596
embryo 20-22hr
2837
embryo 22-24hr
2362
larva L1
2923
larva L2
2492
larva L3 12hr old
2205
larva L3 puffstage 1-2
1688
larva L3 puffstage 3-6
1706
larva L3 puffstage 7-9
1784
white prepupae new
1467
white prepupae 12hr
1265
white prepupae 24hr
1345
pupae 2d postWPP
1168
pupae 3d postWPP
975
pupae 4d postWPP
1082
adult male 01day
875
adult male 05day
937
adult male 30day
1039
adult female 01day
2005
adult female 05day
1933
adult female 30day
2205
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
Heatmap
Developmental Stage
Expression Level
embryo 00-02hr
embryo 02-04hr
embryo 04-06hr
embryo 06-08hr
embryo 08-10hr
embryo 10-12hr
embryo 12-14hr
embryo 14-16hr
embryo 16-18hr
embryo 18-20hr
embryo 20-22hr
embryo 22-24hr
larva L1
larva L2
larva L3 12hr old
larva L3 puffstage 1-2
larva L3 puffstage 3-6
larva L3 puffstage 7-9
white prepupae new
white prepupae 12hr
white prepupae 24hr
pupae 2d postWPP
pupae 3d postWPP
pupae 4d postWPP
adult male 01day
adult male 05day
adult male 30day
adult female 01day
adult female 05day
adult female 30day
modENCODE Cell Lines RNA-Seq
Linear, scaled to maximum expression level
Cell Line
Expression Level
Schneider line 2 S2R+
2009
Schneider line 2 Sg4
2374
embryonic 1182-4H
1884
embryonic GM2
1304
embryonic Kc167
1293
embryonic S1
1912
embryonic S3
878
leg disc CME L1
2543
wing disc CME-W2
1379
wing disc ML-DmD8
2599
wing disc ML-DmD9
2497
wing disc ML-DmD16-c3
2090
wing disc ML-DmD21
4720
wing disc ML-DmD32
2378
haltere disc ML-DmD17-c3
1983
eye-antennal disc ML-DmD11
3598
antennal disc ML-DmD20-c5
2492
mixed discs ML-DmD4-c1
2103
CNS ML-DmBG1-c1
2385
CNS ML-DmBG2-c2
1643
tumorous blood cells mbn2
1109
ovary fGS/OSS
1025
ovary OSC
792
ovary OSS
328
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
Linear, scaled to Moderate expression
Cell Line
Expression Level
Schneider line 2 S2R+
(2009)
Schneider line 2 Sg4
(2374)
embryonic 1182-4H
(1884)
embryonic GM2
(1304)
embryonic Kc167
(1293)
embryonic S1
(1912)
embryonic S3
(878)
leg disc CME L1
(2543)
wing disc CME-W2
(1379)
wing disc ML-DmD8
(2599)
wing disc ML-DmD9
(2497)
wing disc ML-DmD16-c3
(2090)
wing disc ML-DmD21
(4720)
wing disc ML-DmD32
(2378)
haltere disc ML-DmD17-c3
(1983)
eye-antennal disc ML-DmD11
(3598)
antennal disc ML-DmD20-c5
(2492)
mixed discs ML-DmD4-c1
(2103)
CNS ML-DmBG1-c1
(2385)
CNS ML-DmBG2-c2
(1643)
tumorous blood cells mbn2
(1109)
ovary fGS/OSS
(1025)
ovary OSC
(792)
ovary OSS
(328)
Expression Level Scale
Very low
Low
Moderate
Moderately high
Linear, scaled to High expression
Cell Line
Expression Level
Schneider line 2 S2R+
(2009)
Schneider line 2 Sg4
(2374)
embryonic 1182-4H
(1884)
embryonic GM2
(1304)
embryonic Kc167
(1293)
embryonic S1
(1912)
embryonic S3
(878)
leg disc CME L1
(2543)
wing disc CME-W2
(1379)
wing disc ML-DmD8
(2599)
wing disc ML-DmD9
(2497)
wing disc ML-DmD16-c3
(2090)
wing disc ML-DmD21
(4720)
wing disc ML-DmD32
(2378)
haltere disc ML-DmD17-c3
(1983)
eye-antennal disc ML-DmD11
(3598)
antennal disc ML-DmD20-c5
(2492)
mixed discs ML-DmD4-c1
(2103)
CNS ML-DmBG1-c1
(2385)
CNS ML-DmBG2-c2
(1643)
tumorous blood cells mbn2
(1109)
ovary fGS/OSS
(1025)
ovary OSC
(792)
ovary OSS
(328)
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Linear, scaled to Extremely high expression
Cell Line
Expression Level
Schneider line 2 S2R+
2009
Schneider line 2 Sg4
2374
embryonic 1182-4H
1884
embryonic GM2
1304
embryonic Kc167
1293
embryonic S1
1912
embryonic S3
878
leg disc CME L1
2543
wing disc CME-W2
1379
wing disc ML-DmD8
2599
wing disc ML-DmD9
2497
wing disc ML-DmD16-c3
2090
wing disc ML-DmD21
4720
wing disc ML-DmD32
2378
haltere disc ML-DmD17-c3
1983
eye-antennal disc ML-DmD11
3598
antennal disc ML-DmD20-c5
2492
mixed discs ML-DmD4-c1
2103
CNS ML-DmBG1-c1
2385
CNS ML-DmBG2-c2
1643
tumorous blood cells mbn2
1109
ovary fGS/OSS
1025
ovary OSC
792
ovary OSS
328
Expression Level Scale
Extremely high
log, scaled to maximum expression level
Cell Line
Expression Level
Schneider line 2 S2R+
2009
Schneider line 2 Sg4
2374
embryonic 1182-4H
1884
embryonic GM2
1304
embryonic Kc167
1293
embryonic S1
1912
embryonic S3
878
leg disc CME L1
2543
wing disc CME-W2
1379
wing disc ML-DmD8
2599
wing disc ML-DmD9
2497
wing disc ML-DmD16-c3
2090
wing disc ML-DmD21
4720
wing disc ML-DmD32
2378
haltere disc ML-DmD17-c3
1983
eye-antennal disc ML-DmD11
3598
antennal disc ML-DmD20-c5
2492
mixed discs ML-DmD4-c1
2103
CNS ML-DmBG1-c1
2385
CNS ML-DmBG2-c2
1643
tumorous blood cells mbn2
1109
ovary fGS/OSS
1025
ovary OSC
792
ovary OSS
328
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
log, scaled to Moderate expression
Cell Line
Expression Level
Schneider line 2 S2R+
(2009)
Schneider line 2 Sg4
(2374)
embryonic 1182-4H
(1884)
embryonic GM2
(1304)
embryonic Kc167
(1293)
embryonic S1
(1912)
embryonic S3
(878)
leg disc CME L1
(2543)
wing disc CME-W2
(1379)
wing disc ML-DmD8
(2599)
wing disc ML-DmD9
(2497)
wing disc ML-DmD16-c3
(2090)
wing disc ML-DmD21
(4720)
wing disc ML-DmD32
(2378)
haltere disc ML-DmD17-c3
(1983)
eye-antennal disc ML-DmD11
(3598)
antennal disc ML-DmD20-c5
(2492)
mixed discs ML-DmD4-c1
(2103)
CNS ML-DmBG1-c1
(2385)
CNS ML-DmBG2-c2
(1643)
tumorous blood cells mbn2
(1109)
ovary fGS/OSS
(1025)
ovary OSC
(792)
ovary OSS
(328)
Expression Level Scale
Very low
Low
Moderate
Moderately high
log, scaled to High expression
Cell Line
Expression Level
Schneider line 2 S2R+
(2009)
Schneider line 2 Sg4
(2374)
embryonic 1182-4H
(1884)
embryonic GM2
(1304)
embryonic Kc167
(1293)
embryonic S1
(1912)
embryonic S3
(878)
leg disc CME L1
(2543)
wing disc CME-W2
(1379)
wing disc ML-DmD8
(2599)
wing disc ML-DmD9
(2497)
wing disc ML-DmD16-c3
(2090)
wing disc ML-DmD21
(4720)
wing disc ML-DmD32
(2378)
haltere disc ML-DmD17-c3
(1983)
eye-antennal disc ML-DmD11
(3598)
antennal disc ML-DmD20-c5
(2492)
mixed discs ML-DmD4-c1
(2103)
CNS ML-DmBG1-c1
(2385)
CNS ML-DmBG2-c2
(1643)
tumorous blood cells mbn2
(1109)
ovary fGS/OSS
(1025)
ovary OSC
(792)
ovary OSS
(328)
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
log, scaled to Extremely high expression
Cell Line
Expression Level
Schneider line 2 S2R+
2009
Schneider line 2 Sg4
2374
embryonic 1182-4H
1884
embryonic GM2
1304
embryonic Kc167
1293
embryonic S1
1912
embryonic S3
878
leg disc CME L1
2543
wing disc CME-W2
1379
wing disc ML-DmD8
2599
wing disc ML-DmD9
2497
wing disc ML-DmD16-c3
2090
wing disc ML-DmD21
4720
wing disc ML-DmD32
2378
haltere disc ML-DmD17-c3
1983
eye-antennal disc ML-DmD11
3598
antennal disc ML-DmD20-c5
2492
mixed discs ML-DmD4-c1
2103
CNS ML-DmBG1-c1
2385
CNS ML-DmBG2-c2
1643
tumorous blood cells mbn2
1109
ovary fGS/OSS
1025
ovary OSC
792
ovary OSS
328
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
Heatmap
Cell Line
Expression Level
Schneider line 2 S2R+
Schneider line 2 Sg4
embryonic 1182-4H
embryonic GM2
embryonic Kc167
embryonic S1
embryonic S3
leg disc CME L1
wing disc CME-W2
wing disc ML-DmD8
wing disc ML-DmD9
wing disc ML-DmD16-c3
wing disc ML-DmD21
wing disc ML-DmD32
haltere disc ML-DmD17-c3
eye-antennal disc ML-DmD11
antennal disc ML-DmD20-c5
mixed discs ML-DmD4-c1
CNS ML-DmBG1-c1
CNS ML-DmBG2-c2
tumorous blood cells mbn2
ovary fGS/OSS
ovary OSC
ovary OSS
modENCODE Treatments RNA-Seq
Linear, scaled to maximum expression level
Treatment
Expression Level
extended cold, 4-day adult
806
cold shock, 4-day adult
665
heat shock, 4-day adult
1447
Cadmium 50 mM 6 hrs, larvae L3
1656
Cadmium 50 mM 12 hrs, larvae L3
1440
Cadmium 50 mM 48 hrs, 4-day adult
1213
Cadmium 100 mM 48 hrs, 4-day adult
965
Copper 0.5 mM 12 hrs, larvae L3
1029
Copper 15 mM 48 hrs, 4-day adult
284
Zinc 5 mM 12 hrs, larvae L3
947
Zinc 4.5 mM 48 hrs, 4-day adult
433
Ethanol 2.5% 3 hrs, larvae L3
1444
Ethanol 5% 3 hrs, larvae L3
1423
Ethanol 10% 3 hrs, larvae L3
1438
Caffeine 1.5 mg/ml 4 hrs, larvae L3
1413
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
1233
Caffeine 25 mg/ml 48 hrs, 4-day adult
582
Paraquat 5 mM 48 hrs, 4-day adult
1288
Paraquat 10 mM 48 hrs, 4-day adult
1394
Rotenone 2 μg 12 hrs, larvae L3
1554
Rotenone 8 μg 12 hrs, larvae L3
2096
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
Linear, scaled to Moderate expression
Treatment
Expression Level
extended cold, 4-day adult
(806)
cold shock, 4-day adult
(665)
heat shock, 4-day adult
(1447)
Cadmium 50 mM 6 hrs, larvae L3
(1656)
Cadmium 50 mM 12 hrs, larvae L3
(1440)
Cadmium 50 mM 48 hrs, 4-day adult
(1213)
Cadmium 100 mM 48 hrs, 4-day adult
(965)
Copper 0.5 mM 12 hrs, larvae L3
(1029)
Copper 15 mM 48 hrs, 4-day adult
(284)
Zinc 5 mM 12 hrs, larvae L3
(947)
Zinc 4.5 mM 48 hrs, 4-day adult
(433)
Ethanol 2.5% 3 hrs, larvae L3
(1444)
Ethanol 5% 3 hrs, larvae L3
(1423)
Ethanol 10% 3 hrs, larvae L3
(1438)
Caffeine 1.5 mg/ml 4 hrs, larvae L3
(1413)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
(1233)
Caffeine 25 mg/ml 48 hrs, 4-day adult
(582)
Paraquat 5 mM 48 hrs, 4-day adult
(1288)
Paraquat 10 mM 48 hrs, 4-day adult
(1394)
Rotenone 2 μg 12 hrs, larvae L3
(1554)
Rotenone 8 μg 12 hrs, larvae L3
(2096)
Expression Level Scale
Very low
Low
Moderate
Moderately high
Linear, scaled to High expression
Treatment
Expression Level
extended cold, 4-day adult
(806)
cold shock, 4-day adult
(665)
heat shock, 4-day adult
(1447)
Cadmium 50 mM 6 hrs, larvae L3
(1656)
Cadmium 50 mM 12 hrs, larvae L3
(1440)
Cadmium 50 mM 48 hrs, 4-day adult
(1213)
Cadmium 100 mM 48 hrs, 4-day adult
(965)
Copper 0.5 mM 12 hrs, larvae L3
(1029)
Copper 15 mM 48 hrs, 4-day adult
(284)
Zinc 5 mM 12 hrs, larvae L3
(947)
Zinc 4.5 mM 48 hrs, 4-day adult
(433)
Ethanol 2.5% 3 hrs, larvae L3
(1444)
Ethanol 5% 3 hrs, larvae L3
(1423)
Ethanol 10% 3 hrs, larvae L3
(1438)
Caffeine 1.5 mg/ml 4 hrs, larvae L3
(1413)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
(1233)
Caffeine 25 mg/ml 48 hrs, 4-day adult
(582)
Paraquat 5 mM 48 hrs, 4-day adult
(1288)
Paraquat 10 mM 48 hrs, 4-day adult
(1394)
Rotenone 2 μg 12 hrs, larvae L3
(1554)
Rotenone 8 μg 12 hrs, larvae L3
(2096)
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Linear, scaled to Extremely high expression
Treatment
Expression Level
extended cold, 4-day adult
806
cold shock, 4-day adult
665
heat shock, 4-day adult
1447
Cadmium 50 mM 6 hrs, larvae L3
1656
Cadmium 50 mM 12 hrs, larvae L3
1440
Cadmium 50 mM 48 hrs, 4-day adult
1213
Cadmium 100 mM 48 hrs, 4-day adult
965
Copper 0.5 mM 12 hrs, larvae L3
1029
Copper 15 mM 48 hrs, 4-day adult
284
Zinc 5 mM 12 hrs, larvae L3
947
Zinc 4.5 mM 48 hrs, 4-day adult
433
Ethanol 2.5% 3 hrs, larvae L3
1444
Ethanol 5% 3 hrs, larvae L3
1423
Ethanol 10% 3 hrs, larvae L3
1438
Caffeine 1.5 mg/ml 4 hrs, larvae L3
1413
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
1233
Caffeine 25 mg/ml 48 hrs, 4-day adult
582
Paraquat 5 mM 48 hrs, 4-day adult
1288
Paraquat 10 mM 48 hrs, 4-day adult
1394
Rotenone 2 μg 12 hrs, larvae L3
1554
Rotenone 8 μg 12 hrs, larvae L3
2096
Expression Level Scale
Extremely high
log, scaled to maximum expression level
Treatment
Expression Level
extended cold, 4-day adult
806
cold shock, 4-day adult
665
heat shock, 4-day adult
1447
Cadmium 50 mM 6 hrs, larvae L3
1656
Cadmium 50 mM 12 hrs, larvae L3
1440
Cadmium 50 mM 48 hrs, 4-day adult
1213
Cadmium 100 mM 48 hrs, 4-day adult
965
Copper 0.5 mM 12 hrs, larvae L3
1029
Copper 15 mM 48 hrs, 4-day adult
284
Zinc 5 mM 12 hrs, larvae L3
947
Zinc 4.5 mM 48 hrs, 4-day adult
433
Ethanol 2.5% 3 hrs, larvae L3
1444
Ethanol 5% 3 hrs, larvae L3
1423
Ethanol 10% 3 hrs, larvae L3
1438
Caffeine 1.5 mg/ml 4 hrs, larvae L3
1413
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
1233
Caffeine 25 mg/ml 48 hrs, 4-day adult
582
Paraquat 5 mM 48 hrs, 4-day adult
1288
Paraquat 10 mM 48 hrs, 4-day adult
1394
Rotenone 2 μg 12 hrs, larvae L3
1554
Rotenone 8 μg 12 hrs, larvae L3
2096
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
log, scaled to Moderate expression
Treatment
Expression Level
extended cold, 4-day adult
(806)
cold shock, 4-day adult
(665)
heat shock, 4-day adult
(1447)
Cadmium 50 mM 6 hrs, larvae L3
(1656)
Cadmium 50 mM 12 hrs, larvae L3
(1440)
Cadmium 50 mM 48 hrs, 4-day adult
(1213)
Cadmium 100 mM 48 hrs, 4-day adult
(965)
Copper 0.5 mM 12 hrs, larvae L3
(1029)
Copper 15 mM 48 hrs, 4-day adult
(284)
Zinc 5 mM 12 hrs, larvae L3
(947)
Zinc 4.5 mM 48 hrs, 4-day adult
(433)
Ethanol 2.5% 3 hrs, larvae L3
(1444)
Ethanol 5% 3 hrs, larvae L3
(1423)
Ethanol 10% 3 hrs, larvae L3
(1438)
Caffeine 1.5 mg/ml 4 hrs, larvae L3
(1413)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
(1233)
Caffeine 25 mg/ml 48 hrs, 4-day adult
(582)
Paraquat 5 mM 48 hrs, 4-day adult
(1288)
Paraquat 10 mM 48 hrs, 4-day adult
(1394)
Rotenone 2 μg 12 hrs, larvae L3
(1554)
Rotenone 8 μg 12 hrs, larvae L3
(2096)
Expression Level Scale
Very low
Low
Moderate
Moderately high
log, scaled to High expression
Treatment
Expression Level
extended cold, 4-day adult
(806)
cold shock, 4-day adult
(665)
heat shock, 4-day adult
(1447)
Cadmium 50 mM 6 hrs, larvae L3
(1656)
Cadmium 50 mM 12 hrs, larvae L3
(1440)
Cadmium 50 mM 48 hrs, 4-day adult
(1213)
Cadmium 100 mM 48 hrs, 4-day adult
(965)
Copper 0.5 mM 12 hrs, larvae L3
(1029)
Copper 15 mM 48 hrs, 4-day adult
(284)
Zinc 5 mM 12 hrs, larvae L3
(947)
Zinc 4.5 mM 48 hrs, 4-day adult
(433)
Ethanol 2.5% 3 hrs, larvae L3
(1444)
Ethanol 5% 3 hrs, larvae L3
(1423)
Ethanol 10% 3 hrs, larvae L3
(1438)
Caffeine 1.5 mg/ml 4 hrs, larvae L3
(1413)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
(1233)
Caffeine 25 mg/ml 48 hrs, 4-day adult
(582)
Paraquat 5 mM 48 hrs, 4-day adult
(1288)
Paraquat 10 mM 48 hrs, 4-day adult
(1394)
Rotenone 2 μg 12 hrs, larvae L3
(1554)
Rotenone 8 μg 12 hrs, larvae L3
(2096)
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
log, scaled to Extremely high expression
Treatment
Expression Level
extended cold, 4-day adult
806
cold shock, 4-day adult
665
heat shock, 4-day adult
1447
Cadmium 50 mM 6 hrs, larvae L3
1656
Cadmium 50 mM 12 hrs, larvae L3
1440
Cadmium 50 mM 48 hrs, 4-day adult
1213
Cadmium 100 mM 48 hrs, 4-day adult
965
Copper 0.5 mM 12 hrs, larvae L3
1029
Copper 15 mM 48 hrs, 4-day adult
284
Zinc 5 mM 12 hrs, larvae L3
947
Zinc 4.5 mM 48 hrs, 4-day adult
433
Ethanol 2.5% 3 hrs, larvae L3
1444
Ethanol 5% 3 hrs, larvae L3
1423
Ethanol 10% 3 hrs, larvae L3
1438
Caffeine 1.5 mg/ml 4 hrs, larvae L3
1413
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
1233
Caffeine 25 mg/ml 48 hrs, 4-day adult
582
Paraquat 5 mM 48 hrs, 4-day adult
1288
Paraquat 10 mM 48 hrs, 4-day adult
1394
Rotenone 2 μg 12 hrs, larvae L3
1554
Rotenone 8 μg 12 hrs, larvae L3
2096
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
Heatmap
Treatment
Expression Level
extended cold, 4-day adult
cold shock, 4-day adult
heat shock, 4-day adult
Cadmium 50 mM 6 hrs, larvae L3
Cadmium 50 mM 12 hrs, larvae L3
Cadmium 50 mM 48 hrs, 4-day adult
Cadmium 100 mM 48 hrs, 4-day adult
Copper 0.5 mM 12 hrs, larvae L3
Copper 15 mM 48 hrs, 4-day adult
Zinc 5 mM 12 hrs, larvae L3
Zinc 4.5 mM 48 hrs, 4-day adult
Ethanol 2.5% 3 hrs, larvae L3
Ethanol 5% 3 hrs, larvae L3
Ethanol 10% 3 hrs, larvae L3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
Caffeine 25 mg/ml 48 hrs, 4-day adult
Paraquat 5 mM 48 hrs, 4-day adult
Paraquat 10 mM 48 hrs, 4-day adult
Rotenone 2 μg 12 hrs, larvae L3
Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
External Data & Images
Linkouts
- Cell culture data for RNAi and other high-throughput technologies
- Adult expression by tissue, using Affymetrix Dros2 array
Alleles & Phenotypes Summary of Allele Phenotypes Classical Alleles ( 1 ) For All Classical Alleles Show Allele of
RpL7A Class Mutagen Stocks Known lesion RpL7Ae02336 2 --
Alleles Carried on Transgenic Constructs
( 3 ) For All Alleles Carried on Transgenic
Constructs Show Aneuploid Aberrations Transgenic Constructs & Insertions
Transgenic Constructs Insertions Gene Ontology: Function, Process
& Cellular Component ( 9 unique terms ) Terms Based on
Experimental Evidence ( 6 terms ) Molecular Function inferred from direct assay
Biological Process inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
Cellular Component inferred from direct assay
Terms Based on Predictions or
Assertions ( 5 terms ) Molecular Function non-traceable author statement
Biological Process non-traceable author statement
Cellular Component non-traceable author statement
non-traceable author statement
Sequence Ontology: Class of Gene Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions Interacts with Please look at the allele data
for full details of the genetic interactions
External Data Linkouts
- A database of protein and genetic interactions
- A comprehensive database of gene and protein interactions.
Protein-protein interactions (PPI) from both known and predicted PPI data sets.
Orthologs
OrthoDB Orthologs (92)
- based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
OrthoDB orthology group searches
Drosophila inclusive ortholog search
Dipteran inclusive ortholog search
Insect inclusive ortholog search
Arthropod inclusive ortholog search
Metazoa inclusive ortholog search
Orthologs in Drosophila Species
(EOG6NS3XT )
Drosophila melanogaster
fruit fly
Drosophila pseudoobscura pseudoobscura
Y
Orthologs in non-Drosophila Dipterans
(EOG6GHZZ5 )
Aedes aegypti
Yellow fever mosquito
Anopheles gambiae
Malaria mosquito
Culex quinquefasciatus
Southern house mosquito
Orthologs in non-Dipteran Insects
(EOG6ZCS1S )
Apis mellifera
Western honey bee
Amel\RpL7A
Nasonia vitripennis
Parasitic wasp
Nvit\Nasvi2EG018124
Acromyrmex echinatior
Panamanian leafcutter ant
Aech\AECH22685
Atta cephalotes
Leafcutter ant
Acep\ACEP15612
Camponotus floridanus
Florida carpenter ant
Cflo\CFLO23436
Harpegnathos saltator
Jerdons jumping ant
Hsal\HSAL12631
Harpegnathos saltator
Jerdons jumping ant
Hsal\HSAL11255
Linepithema humile
Argentine ant
Lhum\LH14018
Pogonomyrmex barbatus
Red harvester ant
Pbar\PB23187
Solenopsis invicta
Red fire ant
Sinv\SINV25808
Acyrthosiphon pisum
Pea aphid
Tribolium castaneum
Red flour beetle
Orthologs in non-Insect Arthropods
(EOG6G79FM )
Ixodes scapularis
Deer tick
Ixodes scapularis
Deer tick
Orthologs in non-Arthropod Metazoa
(EOG6XHBTV )
Caenorhabditis elegans
Nematode
Caenorhabditis elegans
Nematode
Strongylocentrotus purpuratus
Purple sea urchin
Xenopus tropicalis
Western clawed frog
Gallus gallus
Domestic chicken
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Rattus norvegicus
Norway rat
Human Orthologs (1)AAA Orthologs (11)
based on analysis using Dmel annotation version 4.3
Drosophila pseudoobscura pseudoobscura
Stocks & Reagents Stocks Listed in FlyBase ( 4 )Bloomington Harvard VDRC Genomic Clones ( 2 )Please Note FlyBase no
longer curates genomic clone accessions so this list
may not be complete
cDNA Clones ( 970 )Please Note This section lists
cDNAs and ESTs that fall within the genomic extent
of the gene model, which may include cDNAs and ESTs
of genes within introns, or of overlapping genes.
Please see
GBrowse for alignment of the cDNAs and ESTs
to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones Other clones cDNA Clones, End Sequenced
(ESTs) BDGP DGC clones Other clones RNAi & Array Information Linkouts
- Results from RNAi screens.
- GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
Antibody Information
Other Information Discoverer Etymology Identification Relationship to Other Genes Source for database identity of Source for database merge of Additional comments "RpL7A" likely corresponds to "M(1)5D6A".
Other Comments RNAi screen using dsRNA made from templates generated with primers directed against this gene results in aberrantly short, monopolar spindles when assayed in S2 cells. This phenotype can be observed when the screen is performed with or without
Cdc27 dsRNA.
Deletions removing
RpL7A but no other cytoplasmic ribosomal protein-encoding genes show Minute phenotypes.
RNAi generated by PCR using primers directed to this gene causes a cell growth and viability phenotype when assayed in Kc167 and S2R+ cells.
Isolated using a mouse Surf-3/rpL7a cDNA as a probe, under low stringency conditions.
The genomic organisation of the
RpL7A locus has been analysed.
The
RpL7A transcription unit was identified during a molecular analysis of the
dx region.
External Crossreferences & Linkouts
Sequence Crossreferences
- A searchable database of RefSeq genes.
Other Crossreferences
domains - A database of protein families, domains, and functional sites
Linkouts
- A database of protein and genetic interactions
- A comprehensive database of gene and protein interactions.
- Results from RNAi screens.
- Cell culture data for RNAi and other high-throughput technologies
- Adult expression by tissue, using Affymetrix Dros2 array
- Integrated genomics database for Drosophila, Anopheles, and C.elegans
- GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
Protein-protein interactions (PPI) from both known and predicted PPI data sets.
- Data generated by the modENCODE project.
Synonyms & Secondary IDs
( 8 )Reported As Symbol Synonym CG3314
(
Huang et al., 2005 ,
Goshima et al., 2007 ,
Marygold et al., 2007 ,
Keleman et al., 2009.8.5 ,
Cammarato et al., 2011 ,
Yano et al., 2012 )
RpL7A
(
Fischer et al., 2012 ,
Goshima et al., 2007 ,
Kallappagoudar et al., 2010 ,
Marygold et al., 2007 ,
Nie et al., 2009 ,
Japanese National Institute of Genetics, 2012.5.21 ,
Cook et al., 2012 )
Name Synonym Secondary FlyBase
IDs References ( 36 )Generate a list of List References by type
Recent research papers ( 6 )
Cook et al., 2012, Genome Biol. 13(3): R21The generation of chromosomal deletions to provide extensive coverage and subdivision of the Drosophila melanogaster genome. [FBrf0219066] Fischer et al., 2012, Proc. Biol. Sci. 279(1738): 2636--2644Conserved properties of Drosophila and human spermatozoal mRNA repertoires. [FBrf0218415] Yano et al., 2012, J. Neurogenet. 26(1): 53--63Identification of proteasome components required for apical localization of chaoptin using functional genomics. [FBrf0217843] Booker et al., 2011, BMC Genomics 12: 50False negative rates in Drosophila cell-based RNAi screens: a case study. [FBrf0212969] Casad et al., 2011, Genetics 189(3): 861--870Cardiomyopathy Is Associated with Ribosomal Protein Gene Haplo-Insufficiency in Drosophila melanogaster. [FBrf0216591] Davis et al., 2011, BMC Dev. Biol. 11: 66Identification of common and cell type specific LXXLL motif EcR cofactors using a bioinformatics refined candidate RNAi screen in Drosophila melanogaster cell lines. [FBrf0216830]