A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Gene Dmel\Apc

General Information
SymbolDmel\ApcSpeciesD. melanogaster
NameAPC-likeAnnotation symbolCG1451
Feature typeprotein_coding_geneFlyBase IDFBgn0015589
Gene Model StatusCurrent Stock availability 9 publicly available
Also Known AsAPC1, D-APC, dAPC, dAPC1
Genomic Location
Chromosome (arm)3RRecombination map3-
Cytogenetic map98E5-98E6Sequence location3R:24,658,022..24,670,372 [-]

Genomic Maps

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modENCODE GBrowse
detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
The gene APC-like is referred to in FlyBase by the symbol Dmel\Apc (CG1451, FBgn0015589). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: beta-catenin binding. There is experimental evidence for 14 unique biological process terms, many of which group under: system development; biological regulation; multicellular organismal development; cellular process; cellular component organization or biogenesis; localization; regulation of Wnt receptor signaling pathway; cell proliferation; larval chitin-based cuticle development; regionalization; embryonic development via the syncytial blastoderm; regulation of signal transduction. 14 alleles are reported. The phenotypes of these alleles are annotated with: external compound sense organ; organ system subdivision; peripheral nervous system; organ system; histaminergic neuron; adult; multi-tissue structure; male organism; region of integument; somatic cell of testis. It has one annotated transcript and one annotated polypeptide. Protein features are: Adenomatous polyposis coli protein, 15 residue repeat; Adenomatous polyposis coli protein, cysteine-rich repeat; Armadillo; Armadillo-like helical; Armadillo-type fold. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-06 and 12-18 hour embryonic stages, at stages throughout the pupal period. Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: larval/adult central nervous system. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1628548_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of Apc. Gene sequence location is 3R:24658022..24670372.

External Summaries
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Description
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FB2011_10
References
FB2012_01
References
Sequence features
Controlled Vocabulary Terms
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
98E5-98E6  
Limits computationally determined from genome sequence between P{PZ}l(3)0648706487 and P{EP}EP3390EP3390  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
98E-98F  
98F-98F  
(determined by in situ hybridisation)  
98D-98E  
(determined by in situ hybridisation)  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\Apc for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0085353 FBtr0085352 FBtr0085351 FBtr0289996 FBtr0289997 FBpp0084722 FBpp0084721 FBpp0084720 FBpp0288435 FBpp0288436 FBti0052177 FBti0038727 FBti0132563 FBti0114219 FBti0043330 FBti0048665 FBti0104218 FBti0128417 FBti0072819 FBti0038863 FBti0107053 FBti0049193
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0085351
  8344
  2417
Additional Transcript Data & Comments
Reported size (kB)
8 (northern blot)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
Apc-PA  
FBpp0084720  
261.3  
2417  
5.35  
Additional Polypeptide Data & Comments
Reported size (kDa)
2416 (aa); 260 (kD predicted)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
in situ
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
Apc transcripts are observed in very early embyros and are not seen again until after germ band retraction. At that time they are concentrated in the CNS where they are restricted to postmitotic cells. Transcripts are also found in the epidermis.
Marker for
Subcellular Localization
CV Term
Notes
hidePolypeptide Expression
immunolocalization
Stage
Tissue/Position (including subcellular localization)
Reference
Comment:Expression more prominent in CNS.
Additional Descriptive Data
The Apc protein colocalizes with shot on microtubules in mature tendon cells of third instar larvae. There is a focus of staining overlapping a compact microtubule array near the muscle-tendon junction. This unique subcellular structure extends to the cuticle attachment site.
Apc protein is detected in the nervous system of embryos from germ-band retraction on. It localizes to axon fiber tracts and motor neurons. Initially, similar levels are found in longitudinal and commissural tracts. Later, staining is more intense in the longitudinal tracts and is distributed in patches or streaks within specific fibers in the longitudinal tracts.
Embryonic expression of Apc protein is ubiquitous, but more pronounced in the CNS.
Marker for
Subcellular Localization
CV Term
Notes
hide High-Throughput Expression Data
or
Untitled Document detailed view WASp-RB WASp-RA Apc-RA
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

modENCODE Temporal Expression Data for FBgn0015589


   Styles
Linear
Logarithmic
Heatmap
   Scales
max expr for FBgn0015589
Very low expression bin max
Moderate expression bin max
High expression bin max
Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-06 and 12-18 hour embryonic stages, at stages throughout the pupal period.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No expression (0 - 0)
 
Extremely low expression (1 - 10)
 
Very low expression (11 - 100)
 
Low expression (101 - 400)
 
Moderate expression (401 - 1400)
 
Moderately high expression (1401 - 4000)
 
High expression (4001 - 10000)
 
Very high expression (10001 - 100000)
 
Extremely high expression (100001 - 2000000)

Linear, scaled to maximum FBgn0015589 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 1754
embryo 02-04hr
 
 726
embryo 04-06hr
 
 281
embryo 06-08hr
 
 471
embryo 08-10hr
 
 987
embryo 10-12hr
 
 1030
embryo 12-14hr
 
 1554
embryo 14-16hr
 
 1789
embryo 16-18hr
 
 1491
embryo 18-20hr
 
 1232
embryo 20-22hr
 
 1119
embryo 22-24hr
 
 1140
larva L1
 
 891
larva L2
 
 503
larva L3 12hr old
 
 461
larva L3 puffstage 1-2
 
 305
larva L3 puffstage 3-6
 
 668
larva L3 puffstage 7-9
 
 733
white prepupae new
 
 951
white prepupae 12hr
 
 1190
white prepupae 24hr
 
 1740
pupae 2d postWPP
 
 2028
pupae 3d postWPP
 
 735
pupae 4d postWPP
 
 457
adult male 01day
 
 664
adult male 05day
 
 792
adult male 30day
 
 765
adult female 01day
 
 852
adult female 05day
 
 1334
adult female 30day
 
 1329
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (1754)
embryo 02-04hr
 (726)
embryo 04-06hr
 (281)
embryo 06-08hr
 (471)
embryo 08-10hr
 (987)
embryo 10-12hr
 (1030)
embryo 12-14hr
 (1554)
embryo 14-16hr
 (1789)
embryo 16-18hr
 (1491)
embryo 18-20hr
 (1232)
embryo 20-22hr
 (1119)
embryo 22-24hr
 (1140)
larva L1
 (891)
larva L2
 (503)
larva L3 12hr old
 (461)
larva L3 puffstage 1-2
 (305)
larva L3 puffstage 3-6
 (668)
larva L3 puffstage 7-9
 (733)
white prepupae new
 (951)
white prepupae 12hr
 (1190)
white prepupae 24hr
 (1740)
pupae 2d postWPP
 (2028)
pupae 3d postWPP
 (735)
pupae 4d postWPP
 (457)
adult male 01day
 (664)
adult male 05day
 (792)
adult male 30day
 (765)
adult female 01day
 (852)
adult female 05day
 (1334)
adult female 30day
 (1329)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (1754)
embryo 02-04hr
 
 726
embryo 04-06hr
 
 281
embryo 06-08hr
 
 471
embryo 08-10hr
 
 987
embryo 10-12hr
 
 1030
embryo 12-14hr
 (1554)
embryo 14-16hr
 (1789)
embryo 16-18hr
 1491
embryo 18-20hr
 
 1232
embryo 20-22hr
 
 1119
embryo 22-24hr
 
 1140
larva L1
 
 891
larva L2
 
 503
larva L3 12hr old
 
 461
larva L3 puffstage 1-2
 
 305
larva L3 puffstage 3-6
 
 668
larva L3 puffstage 7-9
 
 733
white prepupae new
 
 951
white prepupae 12hr
 
 1190
white prepupae 24hr
 (1740)
pupae 2d postWPP
 (2028)
pupae 3d postWPP
 
 735
pupae 4d postWPP
 
 457
adult male 01day
 
 664
adult male 05day
 
 792
adult male 30day
 
 765
adult female 01day
 
 852
adult female 05day
 
 1334
adult female 30day
 
 1329
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 1754
embryo 02-04hr
 
 726
embryo 04-06hr
 
 281
embryo 06-08hr
 
 471
embryo 08-10hr
 
 987
embryo 10-12hr
 
 1030
embryo 12-14hr
 
 1554
embryo 14-16hr
 
 1789
embryo 16-18hr
 
 1491
embryo 18-20hr
 
 1232
embryo 20-22hr
 
 1119
embryo 22-24hr
 
 1140
larva L1
 
 891
larva L2
 
 503
larva L3 12hr old
 
 461
larva L3 puffstage 1-2
 
 305
larva L3 puffstage 3-6
 
 668
larva L3 puffstage 7-9
 
 733
white prepupae new
 
 951
white prepupae 12hr
 
 1190
white prepupae 24hr
 
 1740
pupae 2d postWPP
 
 2028
pupae 3d postWPP
 
 735
pupae 4d postWPP
 
 457
adult male 01day
 
 664
adult male 05day
 
 792
adult male 30day
 
 765
adult female 01day
 
 852
adult female 05day
 
 1334
adult female 30day
 
 1329
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 1754
embryo 02-04hr
 
 726
embryo 04-06hr
 
 281
embryo 06-08hr
 
 471
embryo 08-10hr
 
 987
embryo 10-12hr
 
 1030
embryo 12-14hr
 
 1554
embryo 14-16hr
 
 1789
embryo 16-18hr
 
 1491
embryo 18-20hr
 
 1232
embryo 20-22hr
 
 1119
embryo 22-24hr
 
 1140
larva L1
 
 891
larva L2
 
 503
larva L3 12hr old
 
 461
larva L3 puffstage 1-2
 
 305
larva L3 puffstage 3-6
 
 668
larva L3 puffstage 7-9
 
 733
white prepupae new
 
 951
white prepupae 12hr
 
 1190
white prepupae 24hr
 
 1740
pupae 2d postWPP
 
 2028
pupae 3d postWPP
 
 735
pupae 4d postWPP
 
 457
adult male 01day
 
 664
adult male 05day
 
 792
adult male 30day
 
 765
adult female 01day
 
 852
adult female 05day
 
 1334
adult female 30day
 
 1329
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to maximum FBgn0015589 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 1754
embryo 02-04hr
 
 726
embryo 04-06hr
 
 281
embryo 06-08hr
 
 471
embryo 08-10hr
 
 987
embryo 10-12hr
 
 1030
embryo 12-14hr
 
 1554
embryo 14-16hr
 
 1789
embryo 16-18hr
 
 1491
embryo 18-20hr
 
 1232
embryo 20-22hr
 
 1119
embryo 22-24hr
 
 1140
larva L1
 
 891
larva L2
 
 503
larva L3 12hr old
 
 461
larva L3 puffstage 1-2
 
 305
larva L3 puffstage 3-6
 
 668
larva L3 puffstage 7-9
 
 733
white prepupae new
 
 951
white prepupae 12hr
 
 1190
white prepupae 24hr
 
 1740
pupae 2d postWPP
 
 2028
pupae 3d postWPP
 
 735
pupae 4d postWPP
 
 457
adult male 01day
 
 664
adult male 05day
 
 792
adult male 30day
 
 765
adult female 01day
 
 852
adult female 05day
 
 1334
adult female 30day
 
 1329
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
log, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (1754)
embryo 02-04hr
 (726)
embryo 04-06hr
 (281)
embryo 06-08hr
 (471)
embryo 08-10hr
 (987)
embryo 10-12hr
 (1030)
embryo 12-14hr
 (1554)
embryo 14-16hr
 (1789)
embryo 16-18hr
 (1491)
embryo 18-20hr
 (1232)
embryo 20-22hr
 (1119)
embryo 22-24hr
 (1140)
larva L1
 (891)
larva L2
 (503)
larva L3 12hr old
 (461)
larva L3 puffstage 1-2
 (305)
larva L3 puffstage 3-6
 (668)
larva L3 puffstage 7-9
 (733)
white prepupae new
 (951)
white prepupae 12hr
 (1190)
white prepupae 24hr
 (1740)
pupae 2d postWPP
 (2028)
pupae 3d postWPP
 (735)
pupae 4d postWPP
 (457)
adult male 01day
 (664)
adult male 05day
 (792)
adult male 30day
 (765)
adult female 01day
 (852)
adult female 05day
 (1334)
adult female 30day
 (1329)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 1754
embryo 02-04hr
 
 726
embryo 04-06hr
 
 281
embryo 06-08hr
 
 471
embryo 08-10hr
 
 987
embryo 10-12hr
 
 1030
embryo 12-14hr
 1554
embryo 14-16hr
 1789
embryo 16-18hr
 1491
embryo 18-20hr
 
 1232
embryo 20-22hr
 
 1119
embryo 22-24hr
 
 1140
larva L1
 
 891
larva L2
 
 503
larva L3 12hr old
 
 461
larva L3 puffstage 1-2
 
 305
larva L3 puffstage 3-6
 
 668
larva L3 puffstage 7-9
 
 733
white prepupae new
 
 951
white prepupae 12hr
 
 1190
white prepupae 24hr
 1740
pupae 2d postWPP
 2028
pupae 3d postWPP
 
 735
pupae 4d postWPP
 
 457
adult male 01day
 
 664
adult male 05day
 
 792
adult male 30day
 
 765
adult female 01day
 
 852
adult female 05day
 
 1334
adult female 30day
 
 1329
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 1754
embryo 02-04hr
 
 726
embryo 04-06hr
 
 281
embryo 06-08hr
 
 471
embryo 08-10hr
 
 987
embryo 10-12hr
 
 1030
embryo 12-14hr
 
 1554
embryo 14-16hr
 
 1789
embryo 16-18hr
 
 1491
embryo 18-20hr
 
 1232
embryo 20-22hr
 
 1119
embryo 22-24hr
 
 1140
larva L1
 
 891
larva L2
 
 503
larva L3 12hr old
 
 461
larva L3 puffstage 1-2
 
 305
larva L3 puffstage 3-6
 
 668
larva L3 puffstage 7-9
 
 733
white prepupae new
 
 951
white prepupae 12hr
 
 1190
white prepupae 24hr
 
 1740
pupae 2d postWPP
 
 2028
pupae 3d postWPP
 
 735
pupae 4d postWPP
 
 457
adult male 01day
 
 664
adult male 05day
 
 792
adult male 30day
 
 765
adult female 01day
 
 852
adult female 05day
 
 1334
adult female 30day
 
 1329
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 1754
embryo 02-04hr
 
 726
embryo 04-06hr
 
 281
embryo 06-08hr
 
 471
embryo 08-10hr
 
 987
embryo 10-12hr
 
 1030
embryo 12-14hr
 
 1554
embryo 14-16hr
 
 1789
embryo 16-18hr
 
 1491
embryo 18-20hr
 
 1232
embryo 20-22hr
 
 1119
embryo 22-24hr
 
 1140
larva L1
 
 891
larva L2
 
 503
larva L3 12hr old
 
 461
larva L3 puffstage 1-2
 
 305
larva L3 puffstage 3-6
 
 668
larva L3 puffstage 7-9
 
 733
white prepupae new
 
 951
white prepupae 12hr
 
 1190
white prepupae 24hr
 
 1740
pupae 2d postWPP
 
 2028
pupae 3d postWPP
 
 735
pupae 4d postWPP
 
 457
adult male 01day
 
 664
adult male 05day
 
 792
adult male 30day
 
 765
adult female 01day
 
 852
adult female 05day
 
 1334
adult female 30day
 
 1329
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

FlyAtlas Anatomical Expression Data for FBgn0015589


   Styles
Linear
Logarithmic
Heatmap
Back-to-back
   Scales
max expr for FBgn0015589
Moderate expression bin max
High level expression bin max
Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: larval/adult central nervous system. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval/adult carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (1000 - 25000)

Linear, scaled to maximum FBgn0015589 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 763.275
Larval Midgut
 
 201.6
Larval Hindgut
 
 267.4
Larval Malpighian Tubules
 
 307.5
Larval Fat Body
 
 238.9
Larval Salivary Gland
 
 263.2
Larval Trachea
 
 244.45
Larval Carcass
 
 219.775
Adult Head
 
 303.8
Adult Eye
 
 174.575
Adult Brain
 
 916.1
Adult Thoracic-Abdominal Ganglion
 
 768.9
Adult Crop
 
 191.4
Adult Midgut
 
 257.2
Adult Hindgut
 
 190
Adult Malpighian Tubules
 
 296.1
Adult Fat Body
 
 200.7
Adult Salivary Gland
 
 191.5
Adult Heart
 
 148.5
Adult VirginFemale Spermatheca
 
 295.7
Adult InseminatedFemale Spermatheca
 
 269.7
Adult Ovary
 
 483.4
Adult Testis
 
 96.7
Adult Male Accessory Gland
 
 146
Adult Carcass
 
 132.6
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 (763.275)
Larval Midgut
 
 201.6
Larval Hindgut
 
 267.4
Larval Malpighian Tubules
 
 307.5
Larval Fat Body
 
 238.9
Larval Salivary Gland
 
 263.2
Larval Trachea
 
 244.45
Larval Carcass
 
 219.775
Adult Head
 
 303.8
Adult Eye
 
 174.575
Adult Brain
 (916.1)
Adult Thoracic-Abdominal Ganglion
 (768.9)
Adult Crop
 
 191.4
Adult Midgut
 
 257.2
Adult Hindgut
 
 190
Adult Malpighian Tubules
 
 296.1
Adult Fat Body
 
 200.7
Adult Salivary Gland
 
 191.5
Adult Heart
 
 148.5
Adult VirginFemale Spermatheca
 
 295.7
Adult InseminatedFemale Spermatheca
 
 269.7
Adult Ovary
 
 483.4
Adult Testis
 
 96.7
Adult Male Accessory Gland
 
 146
Adult Carcass
 
 132.6
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 763.275
Larval Midgut
 
 201.6
Larval Hindgut
 
 267.4
Larval Malpighian Tubules
 
 307.5
Larval Fat Body
 
 238.9
Larval Salivary Gland
 
 263.2
Larval Trachea
 
 244.45
Larval Carcass
 
 219.775
Adult Head
 
 303.8
Adult Eye
 
 174.575
Adult Brain
 
 916.1
Adult Thoracic-Abdominal Ganglion
 
 768.9
Adult Crop
 
 191.4
Adult Midgut
 
 257.2
Adult Hindgut
 
 190
Adult Malpighian Tubules
 
 296.1
Adult Fat Body
 
 200.7
Adult Salivary Gland
 
 191.5
Adult Heart
 
 148.5
Adult VirginFemale Spermatheca
 
 295.7
Adult InseminatedFemale Spermatheca
 
 269.7
Adult Ovary
 
 483.4
Adult Testis
 
 96.7
Adult Male Accessory Gland
 
 146
Adult Carcass
 
 132.6
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 763.275
Larval Midgut
 
 201.6
Larval Hindgut
 
 267.4
Larval Malpighian Tubules
 
 307.5
Larval Fat Body
 
 238.9
Larval Salivary Gland
 
 263.2
Larval Trachea
 
 244.45
Larval Carcass
 
 219.775
Adult Head
 
 303.8
Adult Eye
 
 174.575
Adult Brain
 
 916.1
Adult Thoracic-Abdominal Ganglion
 
 768.9
Adult Crop
 
 191.4
Adult Midgut
 
 257.2
Adult Hindgut
 
 190
Adult Malpighian Tubules
 
 296.1
Adult Fat Body
 
 200.7
Adult Salivary Gland
 
 191.5
Adult Heart
 
 148.5
Adult VirginFemale Spermatheca
 
 295.7
Adult InseminatedFemale Spermatheca
 
 269.7
Adult Ovary
 
 483.4
Adult Testis
 
 96.7
Adult Male Accessory Gland
 
 146
Adult Carcass
 
 132.6
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to maximum FBgn0015589 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 763.275
Larval Midgut
 
 201.6
Larval Hindgut
 
 267.4
Larval Malpighian Tubules
 
 307.5
Larval Fat Body
 
 238.9
Larval Salivary Gland
 
 263.2
Larval Trachea
 
 244.45
Larval Carcass
 
 219.775
Adult Head
 
 303.8
Adult Eye
 
 174.575
Adult Brain
 
 916.1
Adult Thoracic-Abdominal Ganglion
 
 768.9
Adult Crop
 
 191.4
Adult Midgut
 
 257.2
Adult Hindgut
 
 190
Adult Malpighian Tubules
 
 296.1
Adult Fat Body
 
 200.7
Adult Salivary Gland
 
 191.5
Adult Heart
 
 148.5
Adult VirginFemale Spermatheca
 
 295.7
Adult InseminatedFemale Spermatheca
 
 269.7
Adult Ovary
 
 483.4
Adult Testis
 
 96.7
Adult Male Accessory Gland
 
 146
Adult Carcass
 
 132.6
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 763.275
Larval Midgut
 
 201.6
Larval Hindgut
 
 267.4
Larval Malpighian Tubules
 
 307.5
Larval Fat Body
 
 238.9
Larval Salivary Gland
 
 263.2
Larval Trachea
 
 244.45
Larval Carcass
 
 219.775
Adult Head
 
 303.8
Adult Eye
 
 174.575
Adult Brain
 (916.1)
Adult Thoracic-Abdominal Ganglion
 768.9
Adult Crop
 
 191.4
Adult Midgut
 
 257.2
Adult Hindgut
 
 190
Adult Malpighian Tubules
 
 296.1
Adult Fat Body
 
 200.7
Adult Salivary Gland
 
 191.5
Adult Heart
 
 148.5
Adult VirginFemale Spermatheca
 
 295.7
Adult InseminatedFemale Spermatheca
 
 269.7
Adult Ovary
 
 483.4
Adult Testis
 
 96.7
Adult Male Accessory Gland
 
 146
Adult Carcass
 
 132.6
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 763.275
Larval Midgut
 
 201.6
Larval Hindgut
 
 267.4
Larval Malpighian Tubules
 
 307.5
Larval Fat Body
 
 238.9
Larval Salivary Gland
 
 263.2
Larval Trachea
 
 244.45
Larval Carcass
 
 219.775
Adult Head
 
 303.8
Adult Eye
 
 174.575
Adult Brain
 
 916.1
Adult Thoracic-Abdominal Ganglion
 
 768.9
Adult Crop
 
 191.4
Adult Midgut
 
 257.2
Adult Hindgut
 
 190
Adult Malpighian Tubules
 
 296.1
Adult Fat Body
 
 200.7
Adult Salivary Gland
 
 191.5
Adult Heart
 
 148.5
Adult VirginFemale Spermatheca
 
 295.7
Adult InseminatedFemale Spermatheca
 
 269.7
Adult Ovary
 
 483.4
Adult Testis
 
 96.7
Adult Male Accessory Gland
 
 146
Adult Carcass
 
 132.6
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 763.275
Larval Midgut
 
 201.6
Larval Hindgut
 
 267.4
Larval Malpighian Tubules
 
 307.5
Larval Fat Body
 
 238.9
Larval Salivary Gland
 
 263.2
Larval Trachea
 
 244.45
Larval Carcass
 
 219.775
Adult Head
 
 303.8
Adult Eye
 
 174.575
Adult Brain
 
 916.1
Adult Thoracic-Abdominal Ganglion
 
 768.9
Adult Crop
 
 191.4
Adult Midgut
 
 257.2
Adult Hindgut
 
 190
Adult Malpighian Tubules
 
 296.1
Adult Fat Body
 
 200.7
Adult Salivary Gland
 
 191.5
Adult Heart
 
 148.5
Adult VirginFemale Spermatheca
 
 295.7
Adult InseminatedFemale Spermatheca
 
 269.7
Adult Ovary
 
 483.4
Adult Testis
 
 96.7
Adult Male Accessory Gland
 
 146
Adult Carcass
 
 132.6
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body
 
 
Adult Salivary Gland
 
 
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass
 
 

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 303.8
 
NA 
Eye
 
 174.575
 
NA 
Brain
 
 916.1
 
763.275 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 768.9
 
NA 
Crop
 
 191.4
 
201.6 
Midgut
 
 257.2
 
267.4 
Hindgut
 
 190
 
307.5 
Malpighian Tubules
 
 296.1
 
238.9 
Fat Body
 
 200.7
 
263.2 
Salivary Gland
 
 191.5
 
NA 
Heart
 
 148.5
 
244.45 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 295.7
 
NA 
InseminatedFemale Spermatheca
 
 269.7
 
NA 
Ovary
 
 483.4
 
NA 
Testis
 
 96.7
 
NA 
Male Accessory Gland
 
 146
 
219.775 
Carcass
 
 132.6

modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
male germline stem cell & centrosome (with Df(3R)3450)
male germline stem cell & spindle (with Df(3R)3450)
neuron & retina & pupa
hide Classical Alleles ( 8 )
For All Classical Alleles Show

Allele of ApcClassMutagenStocksKnown lesion
Apcc007461 --
Apce040971 --
ApcMB08754
1 --
ApcMI01007
1 --
ApcQ8
1 Yes
ApcS76
0 Yes
Apcunspecified
0 --
ApcX1
0 Yes
hide Alleles Carried on Transgenic Constructs ( 6 )
For All Alleles Carried on Transgenic Constructs Show

Allele of ApcClassMutagenStocksKnown lesion
ApcGD13332 Yes
ApcHM050701 Yes
ApcHMS001881 Yes
ApcKK1057180 Yes
ApcScer\UAS.cHa0 Yes
ApcScer\UAS.T:Disc\RFP-mCherry0 Yes
hide Aneuploid Aberrations
Disrupted in
Not disrupted in
Not duplicated in
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
Insertions
Type of insertions
Name
Expression data
insertion of enhancer trap binary system
hide Gene Ontology: Function, Process & Cellular Component ( 21 unique terms )
hide Terms Based on Experimental Evidence ( 18 terms )
Molecular Function
CV term
References
inferred from direct assay
Biological Process
CV term
References
inferred from genetic interaction with Apc2
inferred from genetic interaction with Apc2
inferred from genetic interaction with Apc2
inferred from genetic interaction with Apc2
inferred from genetic interaction with Apc2
inferred from genetic interaction with Apc2
inferred from genetic interaction with Apc2
inferred from genetic interaction with arm
inferred from genetic interaction with Apc2
Cellular Component
CV term
References
inferred from direct assay
inferred from direct assay
inferred from direct assay
hide Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function
CV term
References
inferred from sequence or structural similarity
Biological Process
CV term
References
inferred from sequence or structural similarity
Cellular Component
CV term
References
inferred from sequence or structural similarity
hide Sequence Ontology: Class of Gene
hide Interactions & Pathways
hide Summary of Physical Interactions
Protein-protein
Interacting group
Assay
References
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
Apc allele
Gene
References
hide External Data
Linkouts
BioGRID - A database of protein and genetic interactions
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs
Linkouts
InParanoid A subset of ortholog calls from InParanoid.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 9 )
Bloomington
Harvard
VDRC
hide Genomic Clones ( 1 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 29 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
hide RNAi & Array Information
Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
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hide Relationship to Other Genes
Source for database identity of
Source for database merge of
Source for merge of: Apc CG1451
Additional comments
"S(CycEJP)1S3" is unlikely to correspond to "Apc"; mutations in the two loci complement each other.
hide Other Comments
Apc and Apc2 are required in intestinal stem cells in the adult midgut to regulate proliferation.
dsRNA made from templates generated with primers directed against this gene tested in RNAi screen for effects on Kc167 and S2R+ cell morphology.
shot recruits Eb1/Apc and promotes microtubule assembly at the muscle-tendon junction.
Regulation of arm by Apc inhibits neuronal apoptosis during retinal development.
Apc is capable of down-regulating β-catenin in a colon carcinoma cell line and of interacting with the arm protein in vivo. Its expression pattern and preliminary genetic analysis suggest that it may not be an essential component of arm regulation in the wg pathway.
Identification: cDNA expression library with an antibody against Hsap\APC.
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Linkouts
BioGRID - A database of protein and genetic interactions
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
FlyReactome - A curated knowledgebase of Drosophila melanogaster pathways
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InParanoid A subset of ortholog calls from InParanoid.
Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Synonyms & Secondary IDs ( 21 )
Reported As
Symbol Synonym
Name Synonym
Adenomatous Polyposis Coli
adenomatous polyposis coli 1
Adenomatous Polyposis Coli protein
Secondary FlyBase IDs
  • FBgn0039604
hide References ( 162 )
Generate a list of
List References by type
hide Recent research papers ( 6 )
Benchabane et al., 2011, EMBO J. 30(8): 1444--1458
Jerky/Earthbound facilitates cell-specific Wnt/Wingless signalling by modulating β-catenin-TCF activity. [FBrf0213544]
Henthorn et al., 2011, Mol. Biol. Cell 22(21): 4038--4046
A role for kinesin heavy chain in controlling vesicle transport into dendrites in Drosophila. [FBrf0216511]
Konikoff et al., 2010, J. Mol. Evol. 70(4): 303--312
Distinct molecular evolutionary mechanisms underlie the functional diversification of the Wnt and TGFbeta signaling pathways. [FBrf0210842]
Mattie et al., 2010, Curr. Biol. 20(24): 2169--2177
Directed Microtubule Growth, +TIPs, and Kinesin-2 Are Required for Uniform Microtubule Polarity in Dendrites. [FBrf0212550]
Quijano et al., 2010, PLoS ONE 5(7): e11619
The Sno Oncogene Antagonizes Wingless Signaling during Wing Development in Drosophila. [FBrf0211340]
Zimmerman et al., 2010, Dev. Biol. 340(1): 54--66
Apical constriction and invagination downstream of the canonical Wnt signaling pathway require Rho1 and Myosin II. [FBrf0210185]
hide Recent reviews (0)
All reviews listed in FlyBase were published before 2010