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Gene Dmel\TfIIEβ

General Information
Symbol	Dmel\TfIIEβ	Species	D. melanogaster
Name	Transcription factor IIEβ	Annotation symbol	CG1276
Feature type	protein_coding_gene	FlyBase ID	FBgn0015829
Gene Model Status	Current	Stock availability	4 publicly available
Also Known As	TFIIE, TfIIEbeta
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	64A12-64A12	Sequence location	3L:4,287,038..4,288,349 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Transcription factor IIEβ is referred to in FlyBase by the symbol Dmel\TfIIEβ (CG1276, FBgn0015829). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process: positive regulation of transcription from RNA polymerase II promoter; neurogenesis. 4 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Transcription factor TFIIE beta subunit, DNA-binding domain; Transcription initiation factor TFIIE, beta subunit; Winged helix-turn-helix transcription repressor DNA-binding domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-18 hour embryonic stages, during late larval stages, during early pupal stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system. Comments on Affy2 ProbeSet: ProbeSet 1634616_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of TfIIEbeta. Gene sequence location is 3L:4287038..4288349.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 64A12-64A12   Limits computationally determined from genome sequence between P{PZ}l(3)rG166rG166 and P{PZ}sinu06524
Experimentally Determined Cytological Location
Cytogenetic map Notes References 64B-64B     (Wang, 1996.9.30) 64B-64B   (determined by in situ hybridisation)   (Wang et al., 1997)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\TfIIEβ for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.46
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) TfIIEβ-RA FBtr0073234  NM_079199   1049   292 TfIIEβ-RB FBtr0300449  NM_001169875   1121   249
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein TfIIEβ-PA   FBpp0073090   33.4   292   10.16     NP_523923   AAF47880 TfIIEβ-PB   FBpp0289677   28.5   249   9.84     NP_001163346   ACZ94618
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Winged helix-turn-helix DNA-binding domain (IPR011991) Transcription initiation factor TFIIE, beta subunit (IPR016656) Transcription factor TFIIE beta subunit, DNA-binding domain (IPR003166)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014296 AAF47880   AE014296 ACZ94618   BT022197   BX063155   BX068258   BX068403   CO262810   CO296607   CO310268   CO316876   CO336156   EC068553   EC070649   EC070650   EC080339   EC080404   EC236574   EC238540   EC240813   EC247661   EC262303   U72893 AAD00188
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	O96881 E1JIC9
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 7 -- 8   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 9 -- 10   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 11 -- 12   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 13 -- 16   organism | ubiquitous   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
nucleus inferred from direct assay (Wang et al., 1997) transcription factor TFIIE complex inferred from physical interaction with TfIIEα (Wang et al., 1997)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    187.525 Larval Midgut    54.9 Larval Hindgut    69.9 Larval Malpighian Tubules    119.3 Larval Fat Body    180.5 Larval Salivary Gland    123.9 Larval Trachea    103.6 Larval Carcass    62.2 Adult Head    119 Adult Eye    275.9 Adult Brain    144.7 Adult Thoracic-Abdominal Ganglion    154.8 Adult Crop    118.8 Adult Midgut    92.7 Adult Hindgut    97.2 Adult Malpighian Tubules    78.9 Adult Fat Body    100.1 Adult Salivary Gland    122.1 Adult Heart    111.125 Adult VirginFemale Spermatheca    144.6 Adult InseminatedFemale Spermatheca    136.9 Adult Ovary    151.8 Adult Testis    173.2 Adult Male Accessory Gland    110.9 Adult Carcass    87.1 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    187.525 Larval Midgut    54.9 Larval Hindgut    69.9 Larval Malpighian Tubules    119.3 Larval Fat Body    180.5 Larval Salivary Gland    123.9 Larval Trachea    103.6 Larval Carcass    62.2 Adult Head    119 Adult Eye    275.9 Adult Brain    144.7 Adult Thoracic-Abdominal Ganglion    154.8 Adult Crop    118.8 Adult Midgut    92.7 Adult Hindgut    97.2 Adult Malpighian Tubules    78.9 Adult Fat Body    100.1 Adult Salivary Gland    122.1 Adult Heart    111.125 Adult VirginFemale Spermatheca    144.6 Adult InseminatedFemale Spermatheca    136.9 Adult Ovary    151.8 Adult Testis    173.2 Adult Male Accessory Gland    110.9 Adult Carcass    87.1 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    187.525 Larval Midgut    54.9 Larval Hindgut    69.9 Larval Malpighian Tubules    119.3 Larval Fat Body    180.5 Larval Salivary Gland    123.9 Larval Trachea    103.6 Larval Carcass    62.2 Adult Head    119 Adult Eye    275.9 Adult Brain    144.7 Adult Thoracic-Abdominal Ganglion    154.8 Adult Crop    118.8 Adult Midgut    92.7 Adult Hindgut    97.2 Adult Malpighian Tubules    78.9 Adult Fat Body    100.1 Adult Salivary Gland    122.1 Adult Heart    111.125 Adult VirginFemale Spermatheca    144.6 Adult InseminatedFemale Spermatheca    136.9 Adult Ovary    151.8 Adult Testis    173.2 Adult Male Accessory Gland    110.9 Adult Carcass    87.1 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    187.525 Larval Midgut    54.9 Larval Hindgut    69.9 Larval Malpighian Tubules    119.3 Larval Fat Body    180.5 Larval Salivary Gland    123.9 Larval Trachea    103.6 Larval Carcass    62.2 Adult Head    119 Adult Eye    275.9 Adult Brain    144.7 Adult Thoracic-Abdominal Ganglion    154.8 Adult Crop    118.8 Adult Midgut    92.7 Adult Hindgut    97.2 Adult Malpighian Tubules    78.9 Adult Fat Body    100.1 Adult Salivary Gland    122.1 Adult Heart    111.125 Adult VirginFemale Spermatheca    144.6 Adult InseminatedFemale Spermatheca    136.9 Adult Ovary    151.8 Adult Testis    173.2 Adult Male Accessory Gland    110.9 Adult Carcass    87.1 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    187.525 Larval Midgut    54.9 Larval Hindgut    69.9 Larval Malpighian Tubules    119.3 Larval Fat Body    180.5 Larval Salivary Gland    123.9 Larval Trachea    103.6 Larval Carcass    62.2 Adult Head    119 Adult Eye    275.9 Adult Brain    144.7 Adult Thoracic-Abdominal Ganglion    154.8 Adult Crop    118.8 Adult Midgut    92.7 Adult Hindgut    97.2 Adult Malpighian Tubules    78.9 Adult Fat Body    100.1 Adult Salivary Gland    122.1 Adult Heart    111.125 Adult VirginFemale Spermatheca    144.6 Adult InseminatedFemale Spermatheca    136.9 Adult Ovary    151.8 Adult Testis    173.2 Adult Male Accessory Gland    110.9 Adult Carcass    87.1 Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    187.525 Larval Midgut    54.9 Larval Hindgut    69.9 Larval Malpighian Tubules    119.3 Larval Fat Body    180.5 Larval Salivary Gland    123.9 Larval Trachea    103.6 Larval Carcass    62.2 Adult Head    119 Adult Eye    275.9 Adult Brain    144.7 Adult Thoracic-Abdominal Ganglion    154.8 Adult Crop    118.8 Adult Midgut    92.7 Adult Hindgut    97.2 Adult Malpighian Tubules    78.9 Adult Fat Body    100.1 Adult Salivary Gland    122.1 Adult Heart    111.125 Adult VirginFemale Spermatheca    144.6 Adult InseminatedFemale Spermatheca    136.9 Adult Ovary    151.8 Adult Testis    173.2 Adult Male Accessory Gland    110.9 Adult Carcass    87.1 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    187.525 Larval Midgut    54.9 Larval Hindgut    69.9 Larval Malpighian Tubules    119.3 Larval Fat Body    180.5 Larval Salivary Gland    123.9 Larval Trachea    103.6 Larval Carcass    62.2 Adult Head    119 Adult Eye    275.9 Adult Brain    144.7 Adult Thoracic-Abdominal Ganglion    154.8 Adult Crop    118.8 Adult Midgut    92.7 Adult Hindgut    97.2 Adult Malpighian Tubules    78.9 Adult Fat Body    100.1 Adult Salivary Gland    122.1 Adult Heart    111.125 Adult VirginFemale Spermatheca    144.6 Adult InseminatedFemale Spermatheca    136.9 Adult Ovary    151.8 Adult Testis    173.2 Adult Male Accessory Gland    110.9 Adult Carcass    87.1 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    187.525 Larval Midgut    54.9 Larval Hindgut    69.9 Larval Malpighian Tubules    119.3 Larval Fat Body    180.5 Larval Salivary Gland    123.9 Larval Trachea    103.6 Larval Carcass    62.2 Adult Head    119 Adult Eye    275.9 Adult Brain    144.7 Adult Thoracic-Abdominal Ganglion    154.8 Adult Crop    118.8 Adult Midgut    92.7 Adult Hindgut    97.2 Adult Malpighian Tubules    78.9 Adult Fat Body    100.1 Adult Salivary Gland    122.1 Adult Heart    111.125 Adult VirginFemale Spermatheca    144.6 Adult InseminatedFemale Spermatheca    136.9 Adult Ovary    151.8 Adult Testis    173.2 Adult Male Accessory Gland    110.9 Adult Carcass    87.1 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    119   NA  Eye    275.9   NA  Brain    144.7   187.525  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    154.8   NA  Crop    118.8   54.9  Midgut    92.7   69.9  Hindgut    97.2   119.3  Malpighian Tubules    78.9   180.5  Fat Body    100.1   123.9  Salivary Gland    122.1   NA  Heart    111.125   103.6  Trachea    NA   NA  VirginFemale Spermatheca    144.6   NA  InseminatedFemale Spermatheca    136.9   NA  Ovary    151.8   NA  Testis    173.2   NA  Male Accessory Gland    110.9   62.2  Carcass    87.1 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    36 central nervous system, larvae L3    22 central nervous system, pupae P8    13 head, virgin 1-day female    11 head, virgin 4-day female    10 head, virgin 20-day female    11 head, mated 1-day female    10 head, mated 4-day female    8 head, mated 20-day female    10 head, mated 1-day male    13 head, mated 4-day male    12 head, mated 20-day male    16 salivary gland, larvae L3 wandering    9 salivary gland, white prepupae    21 digestive system, larvae L3 wandering    20 digestive system, 1-day adult    8 digestive system, 4-day adult    8 digestive system, 20-day adult    7 fat body, larvae L3 wandering    7 fat body, white prepupae    16 fat body, pupae P8    8 carcass, larvae L3 wandering    19 carcass, 1-day adult    7 carcass, 4-day adult    8 carcass, 20-day adult    11 ovary, virgin 4-day female    18 ovary, mated 4-day female    16 testis, mated 4-day male    40 accessory gland, mated 4-day male    9 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (36) central nervous system, larvae L3    22 central nervous system, pupae P8    13 head, virgin 1-day female    11 head, virgin 4-day female    10 head, virgin 20-day female    11 head, mated 1-day female    10 head, mated 4-day female    8 head, mated 20-day female    10 head, mated 1-day male    13 head, mated 4-day male    12 head, mated 20-day male    16 salivary gland, larvae L3 wandering    9 salivary gland, white prepupae    21 digestive system, larvae L3 wandering    20 digestive system, 1-day adult    8 digestive system, 4-day adult    8 digestive system, 20-day adult    7 fat body, larvae L3 wandering    7 fat body, white prepupae    16 fat body, pupae P8    8 carcass, larvae L3 wandering    19 carcass, 1-day adult    7 carcass, 4-day adult    8 carcass, 20-day adult    11 ovary, virgin 4-day female    18 ovary, mated 4-day female    16 testis, mated 4-day male  (40) accessory gland, mated 4-day male    9 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    36 central nervous system, larvae L3    22 central nervous system, pupae P8    13 head, virgin 1-day female    11 head, virgin 4-day female    10 head, virgin 20-day female    11 head, mated 1-day female    10 head, mated 4-day female    8 head, mated 20-day female    10 head, mated 1-day male    13 head, mated 4-day male    12 head, mated 20-day male    16 salivary gland, larvae L3 wandering    9 salivary gland, white prepupae    21 digestive system, larvae L3 wandering    20 digestive system, 1-day adult    8 digestive system, 4-day adult    8 digestive system, 20-day adult    7 fat body, larvae L3 wandering    7 fat body, white prepupae    16 fat body, pupae P8    8 carcass, larvae L3 wandering    19 carcass, 1-day adult    7 carcass, 4-day adult    8 carcass, 20-day adult    11 ovary, virgin 4-day female    18 ovary, mated 4-day female    16 testis, mated 4-day male    40 accessory gland, mated 4-day male    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    36 central nervous system, larvae L3    22 central nervous system, pupae P8    13 head, virgin 1-day female    11 head, virgin 4-day female    10 head, virgin 20-day female    11 head, mated 1-day female    10 head, mated 4-day female    8 head, mated 20-day female    10 head, mated 1-day male    13 head, mated 4-day male    12 head, mated 20-day male    16 salivary gland, larvae L3 wandering    9 salivary gland, white prepupae    21 digestive system, larvae L3 wandering    20 digestive system, 1-day adult    8 digestive system, 4-day adult    8 digestive system, 20-day adult    7 fat body, larvae L3 wandering    7 fat body, white prepupae    16 fat body, pupae P8    8 carcass, larvae L3 wandering    19 carcass, 1-day adult    7 carcass, 4-day adult    8 carcass, 20-day adult    11 ovary, virgin 4-day female    18 ovary, mated 4-day female    16 testis, mated 4-day male    40 accessory gland, mated 4-day male    9 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    36 central nervous system, larvae L3    22 central nervous system, pupae P8    13 head, virgin 1-day female    11 head, virgin 4-day female    10 head, virgin 20-day female    11 head, mated 1-day female    10 head, mated 4-day female    8 head, mated 20-day female    10 head, mated 1-day male    13 head, mated 4-day male    12 head, mated 20-day male    16 salivary gland, larvae L3 wandering    9 salivary gland, white prepupae    21 digestive system, larvae L3 wandering    20 digestive system, 1-day adult    8 digestive system, 4-day adult    8 digestive system, 20-day adult    7 fat body, larvae L3 wandering    7 fat body, white prepupae    16 fat body, pupae P8    8 carcass, larvae L3 wandering    19 carcass, 1-day adult    7 carcass, 4-day adult    8 carcass, 20-day adult    11 ovary, virgin 4-day female    18 ovary, mated 4-day female    16 testis, mated 4-day male    40 accessory gland, mated 4-day male    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (36) central nervous system, larvae L3    22 central nervous system, pupae P8    13 head, virgin 1-day female    11 head, virgin 4-day female    10 head, virgin 20-day female    11 head, mated 1-day female    10 head, mated 4-day female    8 head, mated 20-day female    10 head, mated 1-day male    13 head, mated 4-day male    12 head, mated 20-day male    16 salivary gland, larvae L3 wandering    9 salivary gland, white prepupae    21 digestive system, larvae L3 wandering    20 digestive system, 1-day adult    8 digestive system, 4-day adult    8 digestive system, 20-day adult    7 fat body, larvae L3 wandering    7 fat body, white prepupae    16 fat body, pupae P8    8 carcass, larvae L3 wandering    19 carcass, 1-day adult    7 carcass, 4-day adult    8 carcass, 20-day adult    11 ovary, virgin 4-day female    18 ovary, mated 4-day female    16 testis, mated 4-day male  (40) accessory gland, mated 4-day male    9 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    36 central nervous system, larvae L3    22 central nervous system, pupae P8    13 head, virgin 1-day female    11 head, virgin 4-day female    10 head, virgin 20-day female    11 head, mated 1-day female    10 head, mated 4-day female    8 head, mated 20-day female    10 head, mated 1-day male    13 head, mated 4-day male    12 head, mated 20-day male    16 salivary gland, larvae L3 wandering    9 salivary gland, white prepupae    21 digestive system, larvae L3 wandering    20 digestive system, 1-day adult    8 digestive system, 4-day adult    8 digestive system, 20-day adult    7 fat body, larvae L3 wandering    7 fat body, white prepupae    16 fat body, pupae P8    8 carcass, larvae L3 wandering    19 carcass, 1-day adult    7 carcass, 4-day adult    8 carcass, 20-day adult    11 ovary, virgin 4-day female    18 ovary, mated 4-day female    16 testis, mated 4-day male    40 accessory gland, mated 4-day male    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    36 central nervous system, larvae L3    22 central nervous system, pupae P8    13 head, virgin 1-day female    11 head, virgin 4-day female    10 head, virgin 20-day female    11 head, mated 1-day female    10 head, mated 4-day female    8 head, mated 20-day female    10 head, mated 1-day male    13 head, mated 4-day male    12 head, mated 20-day male    16 salivary gland, larvae L3 wandering    9 salivary gland, white prepupae    21 digestive system, larvae L3 wandering    20 digestive system, 1-day adult    8 digestive system, 4-day adult    8 digestive system, 20-day adult    7 fat body, larvae L3 wandering    7 fat body, white prepupae    16 fat body, pupae P8    8 carcass, larvae L3 wandering    19 carcass, 1-day adult    7 carcass, 4-day adult    8 carcass, 20-day adult    11 ovary, virgin 4-day female    18 ovary, mated 4-day female    16 testis, mated 4-day male    40 accessory gland, mated 4-day male    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-18 hour embryonic stages, during late larval stages, during early pupal stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    21 embryo 02-04hr    33 embryo 04-06hr    47 embryo 06-08hr    33 embryo 08-10hr    29 embryo 10-12hr    25 embryo 12-14hr    20 embryo 14-16hr    13 embryo 16-18hr    11 embryo 18-20hr    12 embryo 20-22hr    11 embryo 22-24hr    12 larva L1    10 larva L2    10 larva L3 12hr old    7 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    15 larva L3 puffstage 7-9    19 white prepupae new    18 white prepupae 12hr    21 white prepupae 24hr    21 pupae 2d postWPP    18 pupae 3d postWPP    12 pupae 4d postWPP    9 adult male 01day    14 adult male 05day    16 adult male 30day    11 adult female 01day    10 adult female 05day    16 adult female 30day    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    21 embryo 02-04hr  (33) embryo 04-06hr  (47) embryo 06-08hr  (33) embryo 08-10hr  (29) embryo 10-12hr    25 embryo 12-14hr    20 embryo 14-16hr    13 embryo 16-18hr    11 embryo 18-20hr    12 embryo 20-22hr    11 embryo 22-24hr    12 larva L1    10 larva L2    10 larva L3 12hr old    7 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    15 larva L3 puffstage 7-9    19 white prepupae new    18 white prepupae 12hr    21 white prepupae 24hr    21 pupae 2d postWPP    18 pupae 3d postWPP    12 pupae 4d postWPP    9 adult male 01day    14 adult male 05day    16 adult male 30day    11 adult female 01day    10 adult female 05day    16 adult female 30day    15 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    21 embryo 02-04hr    33 embryo 04-06hr    47 embryo 06-08hr    33 embryo 08-10hr    29 embryo 10-12hr    25 embryo 12-14hr    20 embryo 14-16hr    13 embryo 16-18hr    11 embryo 18-20hr    12 embryo 20-22hr    11 embryo 22-24hr    12 larva L1    10 larva L2    10 larva L3 12hr old    7 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    15 larva L3 puffstage 7-9    19 white prepupae new    18 white prepupae 12hr    21 white prepupae 24hr    21 pupae 2d postWPP    18 pupae 3d postWPP    12 pupae 4d postWPP    9 adult male 01day    14 adult male 05day    16 adult male 30day    11 adult female 01day    10 adult female 05day    16 adult female 30day    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    21 embryo 02-04hr    33 embryo 04-06hr    47 embryo 06-08hr    33 embryo 08-10hr    29 embryo 10-12hr    25 embryo 12-14hr    20 embryo 14-16hr    13 embryo 16-18hr    11 embryo 18-20hr    12 embryo 20-22hr    11 embryo 22-24hr    12 larva L1    10 larva L2    10 larva L3 12hr old    7 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    15 larva L3 puffstage 7-9    19 white prepupae new    18 white prepupae 12hr    21 white prepupae 24hr    21 pupae 2d postWPP    18 pupae 3d postWPP    12 pupae 4d postWPP    9 adult male 01day    14 adult male 05day    16 adult male 30day    11 adult female 01day    10 adult female 05day    16 adult female 30day    15 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    21 embryo 02-04hr    33 embryo 04-06hr    47 embryo 06-08hr    33 embryo 08-10hr    29 embryo 10-12hr    25 embryo 12-14hr    20 embryo 14-16hr    13 embryo 16-18hr    11 embryo 18-20hr    12 embryo 20-22hr    11 embryo 22-24hr    12 larva L1    10 larva L2    10 larva L3 12hr old    7 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    15 larva L3 puffstage 7-9    19 white prepupae new    18 white prepupae 12hr    21 white prepupae 24hr    21 pupae 2d postWPP    18 pupae 3d postWPP    12 pupae 4d postWPP    9 adult male 01day    14 adult male 05day    16 adult male 30day    11 adult female 01day    10 adult female 05day    16 adult female 30day    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    21 embryo 02-04hr  (33) embryo 04-06hr  (47) embryo 06-08hr  (33) embryo 08-10hr  29 embryo 10-12hr    25 embryo 12-14hr    20 embryo 14-16hr    13 embryo 16-18hr    11 embryo 18-20hr    12 embryo 20-22hr    11 embryo 22-24hr    12 larva L1    10 larva L2    10 larva L3 12hr old    7 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    15 larva L3 puffstage 7-9    19 white prepupae new    18 white prepupae 12hr    21 white prepupae 24hr    21 pupae 2d postWPP    18 pupae 3d postWPP    12 pupae 4d postWPP    9 adult male 01day    14 adult male 05day    16 adult male 30day    11 adult female 01day    10 adult female 05day    16 adult female 30day    15 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    21 embryo 02-04hr    33 embryo 04-06hr    47 embryo 06-08hr    33 embryo 08-10hr    29 embryo 10-12hr    25 embryo 12-14hr    20 embryo 14-16hr    13 embryo 16-18hr    11 embryo 18-20hr    12 embryo 20-22hr    11 embryo 22-24hr    12 larva L1    10 larva L2    10 larva L3 12hr old    7 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    15 larva L3 puffstage 7-9    19 white prepupae new    18 white prepupae 12hr    21 white prepupae 24hr    21 pupae 2d postWPP    18 pupae 3d postWPP    12 pupae 4d postWPP    9 adult male 01day    14 adult male 05day    16 adult male 30day    11 adult female 01day    10 adult female 05day    16 adult female 30day    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    21 embryo 02-04hr    33 embryo 04-06hr    47 embryo 06-08hr    33 embryo 08-10hr    29 embryo 10-12hr    25 embryo 12-14hr    20 embryo 14-16hr    13 embryo 16-18hr    11 embryo 18-20hr    12 embryo 20-22hr    11 embryo 22-24hr    12 larva L1    10 larva L2    10 larva L3 12hr old    7 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    15 larva L3 puffstage 7-9    19 white prepupae new    18 white prepupae 12hr    21 white prepupae 24hr    21 pupae 2d postWPP    18 pupae 3d postWPP    12 pupae 4d postWPP    9 adult male 01day    14 adult male 05day    16 adult male 30day    11 adult female 01day    10 adult female 05day    16 adult female 30day    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    41 Schneider line 2 Sg4    10 embryonic 1182-4H    13 embryonic GM2    13 embryonic Kc167    18 embryonic S1    22 embryonic S3    13 leg disc CME L1    14 wing disc CME-W2    18 wing disc ML-DmD8    14 wing disc ML-DmD9    26 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    21 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    22 eye-antennal disc ML-DmD11    19 antennal disc ML-DmD20-c5    20 mixed discs ML-DmD4-c1    16 CNS ML-DmBG1-c1    21 CNS ML-DmBG2-c2    21 tumorous blood cells mbn2    15 ovary fGS/OSS    29 ovary OSC    25 ovary OSS    12 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (41) Schneider line 2 Sg4    10 embryonic 1182-4H    13 embryonic GM2    13 embryonic Kc167    18 embryonic S1    22 embryonic S3    13 leg disc CME L1    14 wing disc CME-W2    18 wing disc ML-DmD8    14 wing disc ML-DmD9  26 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    21 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    22 eye-antennal disc ML-DmD11    19 antennal disc ML-DmD20-c5    20 mixed discs ML-DmD4-c1    16 CNS ML-DmBG1-c1    21 CNS ML-DmBG2-c2    21 tumorous blood cells mbn2    15 ovary fGS/OSS  (29) ovary OSC    25 ovary OSS    12 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    41 Schneider line 2 Sg4    10 embryonic 1182-4H    13 embryonic GM2    13 embryonic Kc167    18 embryonic S1    22 embryonic S3    13 leg disc CME L1    14 wing disc CME-W2    18 wing disc ML-DmD8    14 wing disc ML-DmD9    26 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    21 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    22 eye-antennal disc ML-DmD11    19 antennal disc ML-DmD20-c5    20 mixed discs ML-DmD4-c1    16 CNS ML-DmBG1-c1    21 CNS ML-DmBG2-c2    21 tumorous blood cells mbn2    15 ovary fGS/OSS    29 ovary OSC    25 ovary OSS    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    41 Schneider line 2 Sg4    10 embryonic 1182-4H    13 embryonic GM2    13 embryonic Kc167    18 embryonic S1    22 embryonic S3    13 leg disc CME L1    14 wing disc CME-W2    18 wing disc ML-DmD8    14 wing disc ML-DmD9    26 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    21 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    22 eye-antennal disc ML-DmD11    19 antennal disc ML-DmD20-c5    20 mixed discs ML-DmD4-c1    16 CNS ML-DmBG1-c1    21 CNS ML-DmBG2-c2    21 tumorous blood cells mbn2    15 ovary fGS/OSS    29 ovary OSC    25 ovary OSS    12 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    41 Schneider line 2 Sg4    10 embryonic 1182-4H    13 embryonic GM2    13 embryonic Kc167    18 embryonic S1    22 embryonic S3    13 leg disc CME L1    14 wing disc CME-W2    18 wing disc ML-DmD8    14 wing disc ML-DmD9    26 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    21 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    22 eye-antennal disc ML-DmD11    19 antennal disc ML-DmD20-c5    20 mixed discs ML-DmD4-c1    16 CNS ML-DmBG1-c1    21 CNS ML-DmBG2-c2    21 tumorous blood cells mbn2    15 ovary fGS/OSS    29 ovary OSC    25 ovary OSS    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (41) Schneider line 2 Sg4    10 embryonic 1182-4H    13 embryonic GM2    13 embryonic Kc167    18 embryonic S1    22 embryonic S3    13 leg disc CME L1    14 wing disc CME-W2    18 wing disc ML-DmD8    14 wing disc ML-DmD9  26 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    21 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    22 eye-antennal disc ML-DmD11    19 antennal disc ML-DmD20-c5    20 mixed discs ML-DmD4-c1    16 CNS ML-DmBG1-c1    21 CNS ML-DmBG2-c2    21 tumorous blood cells mbn2    15 ovary fGS/OSS  29 ovary OSC    25 ovary OSS    12 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    41 Schneider line 2 Sg4    10 embryonic 1182-4H    13 embryonic GM2    13 embryonic Kc167    18 embryonic S1    22 embryonic S3    13 leg disc CME L1    14 wing disc CME-W2    18 wing disc ML-DmD8    14 wing disc ML-DmD9    26 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    21 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    22 eye-antennal disc ML-DmD11    19 antennal disc ML-DmD20-c5    20 mixed discs ML-DmD4-c1    16 CNS ML-DmBG1-c1    21 CNS ML-DmBG2-c2    21 tumorous blood cells mbn2    15 ovary fGS/OSS    29 ovary OSC    25 ovary OSS    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    41 Schneider line 2 Sg4    10 embryonic 1182-4H    13 embryonic GM2    13 embryonic Kc167    18 embryonic S1    22 embryonic S3    13 leg disc CME L1    14 wing disc CME-W2    18 wing disc ML-DmD8    14 wing disc ML-DmD9    26 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    21 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    22 eye-antennal disc ML-DmD11    19 antennal disc ML-DmD20-c5    20 mixed discs ML-DmD4-c1    16 CNS ML-DmBG1-c1    21 CNS ML-DmBG2-c2    21 tumorous blood cells mbn2    15 ovary fGS/OSS    29 ovary OSC    25 ovary OSS    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    6 heat shock, 4-day adult    12 Cadmium 50 mM 6 hrs, larvae L3    9 Cadmium 50 mM 12 hrs, larvae L3    18 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    14 Copper 0.5 mM 12 hrs, larvae L3    8 Copper 15 mM 48 hrs, 4-day adult    12 Zinc 5 mM 12 hrs, larvae L3    9 Zinc 4.5 mM 48 hrs, 4-day adult    13 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    8 Caffeine 1.5 mg/ml 4 hrs, larvae L3    14 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    12 Caffeine 25 mg/ml 48 hrs, 4-day adult    9 Paraquat 5 mM 48 hrs, 4-day adult    13 Paraquat 10 mM 48 hrs, 4-day adult    15 Rotenone 2 μg 12 hrs, larvae L3    12 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    6 heat shock, 4-day adult    12 Cadmium 50 mM 6 hrs, larvae L3    9 Cadmium 50 mM 12 hrs, larvae L3    18 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    14 Copper 0.5 mM 12 hrs, larvae L3    8 Copper 15 mM 48 hrs, 4-day adult    12 Zinc 5 mM 12 hrs, larvae L3    9 Zinc 4.5 mM 48 hrs, 4-day adult    13 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    8 Caffeine 1.5 mg/ml 4 hrs, larvae L3    14 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    12 Caffeine 25 mg/ml 48 hrs, 4-day adult    9 Paraquat 5 mM 48 hrs, 4-day adult    13 Paraquat 10 mM 48 hrs, 4-day adult    15 Rotenone 2 μg 12 hrs, larvae L3    12 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    6 heat shock, 4-day adult    12 Cadmium 50 mM 6 hrs, larvae L3    9 Cadmium 50 mM 12 hrs, larvae L3    18 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    14 Copper 0.5 mM 12 hrs, larvae L3    8 Copper 15 mM 48 hrs, 4-day adult    12 Zinc 5 mM 12 hrs, larvae L3    9 Zinc 4.5 mM 48 hrs, 4-day adult    13 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    8 Caffeine 1.5 mg/ml 4 hrs, larvae L3    14 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    12 Caffeine 25 mg/ml 48 hrs, 4-day adult    9 Paraquat 5 mM 48 hrs, 4-day adult    13 Paraquat 10 mM 48 hrs, 4-day adult    15 Rotenone 2 μg 12 hrs, larvae L3    12 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    6 heat shock, 4-day adult    12 Cadmium 50 mM 6 hrs, larvae L3    9 Cadmium 50 mM 12 hrs, larvae L3    18 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    14 Copper 0.5 mM 12 hrs, larvae L3    8 Copper 15 mM 48 hrs, 4-day adult    12 Zinc 5 mM 12 hrs, larvae L3    9 Zinc 4.5 mM 48 hrs, 4-day adult    13 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    8 Caffeine 1.5 mg/ml 4 hrs, larvae L3    14 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    12 Caffeine 25 mg/ml 48 hrs, 4-day adult    9 Paraquat 5 mM 48 hrs, 4-day adult    13 Paraquat 10 mM 48 hrs, 4-day adult    15 Rotenone 2 μg 12 hrs, larvae L3    12 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    6 heat shock, 4-day adult    12 Cadmium 50 mM 6 hrs, larvae L3    9 Cadmium 50 mM 12 hrs, larvae L3    18 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    14 Copper 0.5 mM 12 hrs, larvae L3    8 Copper 15 mM 48 hrs, 4-day adult    12 Zinc 5 mM 12 hrs, larvae L3    9 Zinc 4.5 mM 48 hrs, 4-day adult    13 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    8 Caffeine 1.5 mg/ml 4 hrs, larvae L3    14 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    12 Caffeine 25 mg/ml 48 hrs, 4-day adult    9 Paraquat 5 mM 48 hrs, 4-day adult    13 Paraquat 10 mM 48 hrs, 4-day adult    15 Rotenone 2 μg 12 hrs, larvae L3    12 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    6 heat shock, 4-day adult    12 Cadmium 50 mM 6 hrs, larvae L3    9 Cadmium 50 mM 12 hrs, larvae L3    18 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    14 Copper 0.5 mM 12 hrs, larvae L3    8 Copper 15 mM 48 hrs, 4-day adult    12 Zinc 5 mM 12 hrs, larvae L3    9 Zinc 4.5 mM 48 hrs, 4-day adult    13 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    8 Caffeine 1.5 mg/ml 4 hrs, larvae L3    14 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    12 Caffeine 25 mg/ml 48 hrs, 4-day adult    9 Paraquat 5 mM 48 hrs, 4-day adult    13 Paraquat 10 mM 48 hrs, 4-day adult    15 Rotenone 2 μg 12 hrs, larvae L3    12 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    6 heat shock, 4-day adult    12 Cadmium 50 mM 6 hrs, larvae L3    9 Cadmium 50 mM 12 hrs, larvae L3    18 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    14 Copper 0.5 mM 12 hrs, larvae L3    8 Copper 15 mM 48 hrs, 4-day adult    12 Zinc 5 mM 12 hrs, larvae L3    9 Zinc 4.5 mM 48 hrs, 4-day adult    13 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    8 Caffeine 1.5 mg/ml 4 hrs, larvae L3    14 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    12 Caffeine 25 mg/ml 48 hrs, 4-day adult    9 Paraquat 5 mM 48 hrs, 4-day adult    13 Paraquat 10 mM 48 hrs, 4-day adult    15 Rotenone 2 μg 12 hrs, larvae L3    12 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    6 heat shock, 4-day adult    12 Cadmium 50 mM 6 hrs, larvae L3    9 Cadmium 50 mM 12 hrs, larvae L3    18 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    14 Copper 0.5 mM 12 hrs, larvae L3    8 Copper 15 mM 48 hrs, 4-day adult    12 Zinc 5 mM 12 hrs, larvae L3    9 Zinc 4.5 mM 48 hrs, 4-day adult    13 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    8 Caffeine 1.5 mg/ml 4 hrs, larvae L3    14 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    12 Caffeine 25 mg/ml 48 hrs, 4-day adult    9 Paraquat 5 mM 48 hrs, 4-day adult    13 Paraquat 10 mM 48 hrs, 4-day adult    15 Rotenone 2 μg 12 hrs, larvae L3    12 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_30 mE1_20_mRNA_expression_cluster_04
External Data & Images
Linkouts	BDGP expression data • IP01109 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0015829 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG1276-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal TfIIEβGD6807 lethal, with Scer\GAL4pnr-MD237 TfIIEβGD6807 viable TfIIEβe00364 Sterility Allele fertile TfIIEβe00364 Other Phenotypes Allele neuroanatomy defective | larval stage TfIIEβGD6807 Phenotype manifest in Allele embryonic/larval neuroblast | larval stage TfIIEβGD6807 ganglion mother cell | larval stage TfIIEβGD6807
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of TfIIEβ Class Mutagen Stocks Known lesion TfIIEβe00364 piggyBac transposase 2 --
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of TfIIEβ Class Mutagen Stocks Known lesion TfIIEβGD6807 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes TfIIEβKK108221 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes TfIIEβScer\UAS.VNT.T:Avic\GFP-VN in vitro construct - regulatory fusion in vitro construct - coding region fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(3L)Exel8098 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data
Insertions
	Type of insertions Name Expression data miscellaneous insertions PBac{RB}TfIIEβe00364 NA
Gene Ontology: Function, Process & Cellular Component ( 5 unique terms )
Terms Based on Experimental Evidence ( 4 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
neurogenesis inferred from mutant phenotype (Neumüller et al., 2011) positive regulation of transcription from RNA polymerase II promoter inferred from direct assay (Wang et al., 1997)
Cellular Component
CV term Evidence References
nucleus inferred from direct assay (Wang et al., 1997) transcription factor TFIIE complex inferred from physical interaction with TfIIEα (Wang et al., 1997)
Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
transcription initiation from RNA polymerase II promoter inferred from sequence or structural similarity with EMBL:Y08815 AND inferred from sequence or structural similarity with human GTF2E2 AND inferred from sequence or structural similarity with Saccharomyces TFA2 (Aoyagi and Wassarman, 2000)
Cellular Component
CV term Evidence References
transcription factor TFIIE complex inferred from sequence or structural similarity with EMBL:Y08815 AND inferred from sequence or structural similarity with human GTF2E2 AND inferred from sequence or structural similarity with Saccharomyces TFA2 (Aoyagi and Wassarman, 2000)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
TfIIEβ - CG11266 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) TfIIEβ - CG5726 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) TfIIEβ - Chc anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) TfIIEβ - Imp anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) TfIIEβ - LRP1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) TfIIEβ - SmD3 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) TfIIEβ - Srp54 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) TfIIEβ - TfIIEα anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) TfIIEβ - Vha55 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) TfIIEβ - abs anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) TfIIEβ - eIF6 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions TfIIEβ allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 64004 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0015829 DroID - A comprehensive database of gene and protein interactions. • FBgn0015829 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 38527
Orthologs
OrthoDB Orthologs (40) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6V43TW Dipteran inclusive ortholog search EOG6MPJ01 Insect inclusive ortholog search EOG6R22QV Arthropod inclusive ortholog search EOG6H70TK Metazoa inclusive ortholog search EOG676XT9
Orthologs in Drosophila Species (EOG6V43TW)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\TfIIEβ     Drosophila simulans   Dsim\GD13833 Y   Drosophila sechellia   Dsec\GM14648 Y   Drosophila erecta   Dere\GG15217 Y   Drosophila yakuba   Dyak\GE21436 Y   Drosophila ananassae   Dana\GF25060 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA11796 Y   Drosophila persimilis   Dper\GL17873 Y   Drosophila willistoni   Dwil\GK10558 Y   Drosophila virilis   Dvir\GJ12845 Y   Drosophila mojavensis   Dmoj\GI16593 Y   Drosophila grimshawi   Dgri\GH15942 Y
Orthologs in non-Drosophila Dipterans (EOG6MPJ01)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL011462   Anopheles gambiae Malaria mosquito  Agam\AGAP005382   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ013475
Orthologs in non-Dipteran Insects (EOG6R22QV)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB40984   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG022903   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH21523   Atta cephalotes Leafcutter ant  Acep\ACEP25111   Camponotus floridanus Florida carpenter ant  Cflo\CFLO22768   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL17283   Linepithema humile Argentine ant  Lhum\LH23941   Pogonomyrmex barbatus Red harvester ant  Pbar\PB14966   Solenopsis invicta Red fire ant  Sinv\SINV25220   Acyrthosiphon pisum Pea aphid  Apim\ACYPI003970   Bombyx mori Silkmoth  Bmor\BGIBMGA005878   Pediculus humanus Human body louse  Phum\PHUM501050   Tribolium castaneum Red flour beetle  Tcas\TC008709
Orthologs in non-Insect Arthropods (EOG6H70TK)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_206273   Daphnia pulex Water flea  Dpux\JGI_V11_210668   Ixodes scapularis Deer tick  Isca\ISCW007887
Orthologs in non-Arthropod Metazoa (EOG676XT9)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\TFIIE-beta   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_017897gn   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_001512gn   Danio rerio Zebrafish  Drer\gtf2e2   Xenopus tropicalis Western clawed frog  Xtro\gtf2e2   Gallus gallus Domestic chicken  Ggal\GTF2E2   Mus musculus House mouse  Mmus\Gtf2e2   Rattus norvegicus Norway rat  Rnor\Gtf2e2   Homo sapiens Human  Hsap\GTF2E2
Human Orthologs (1)
Gene OMIM HGNC Hsap\GTF2E2
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD13833 Drosophila sechellia Dsec\GM14648 Drosophila erecta Dere\GG15217 Drosophila yakuba Dyak\GE21436 Drosophila ananassae Dana\GF25060 Drosophila pseudoobscura pseudoobscura Dpse\GA11796 Drosophila persimilis Dper\GL17873 Drosophila willistoni Dwil\GK10558 Drosophila virilis Dvir\GJ12845 Drosophila mojavensis Dmoj\GI16593 Drosophila grimshawi Dgri\GH15942
Stocks & Reagents
Stocks Listed in FlyBase ( 4 )
Bloomington	17849 w1118; PBac{RB}TfIIEβe00364
Harvard	- PBac{RB}TfIIEβe00364
VDRC	v105735 P{KK108221}VIE-260B v17917 w1118; P{GD6807}v17917
Genomic Clones ( 1 )
	BACR39O11 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 15 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	IP01109
Other clones	DPiM_IP01109
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones	81186 98470 162069 557060 CK01.7C.G6 CK01.26D.C10 CK01.30C.C12 CK01.102D.G3 EK086426 EK214417 EK220934 EK266074 EN11944
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0015829 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 38527
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: TfIIEβ CG1276 (Gabrielian, 1999.11)
Source for database merge of
Additional comments
Other Comments
	TfIIE has been purified and shown to include two subunits. (Austin and Biggin, 1996) Kr dimers engage in protein-protein interaction with TfIIEβ (FBrf0082559). Kr monomer-dimer transition alters Krs ability to interact with the general transcription machinery (FBrf0082559). (Roberts and Green, 1995)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_079199 NM_001169875 RefSeq (Proteins) • NP_523923 NP_001163346 DDBJ / EMBL / GenBank • AAD00188 AAF47880 ACZ94618 U72893 Entrez Gene - A searchable database of RefSeq genes. • 38527 UniProtKB/TrEMBL • E1JIC9 O96881
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Winged helix-turn-helix DNA-binding domain (IPR011991) Transcription initiation factor TFIIE, beta subunit (IPR016656) Transcription factor TFIIE beta subunit, DNA-binding domain (IPR003166) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • IP01109
Linkouts
	BioGRID - A database of protein and genetic interactions • 64004 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0015829 DroID - A comprehensive database of gene and protein interactions. • FBgn0015829 DRSC - Results from RNAi screens. • FBgn0015829 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0015829 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG1276-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0015829 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 38527 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 38527 modMine - Data generated by the modENCODE project. • FBgn0015829
Synonyms & Secondary IDs ( 12 )
Reported As
Symbol Synonym	CG1276 (Aoyagi and Wassarman, 2000, Keleman et al., 2009.8.5) dTFIIES (Wang, 1996.9.30) dTFIIE-S (Wang et al., 1997) ES (Park et al., 2001) TFIIbeta (Hudry et al., 2011) TFIIE (Gu et al., 2002, Courey and Jia, 2001, Mizuguchi et al., 2001, Pham et al., 1999, Hansen et al., 1997, Sauer et al., 1995, Sauer et al., 1995, Wampler et al., 1990) TfIIE (Sauer et al., 1995) TfIIEbeta (Giot et al., 2003, Hoskins et al., 2005) TFIIEbeta (Hudry et al., 2011) TfIIEβ
Name Synonym	TFIIE small subunit (Kim and Lis, 2005) Transcription factor IIEβ (Roberts and Green, 1995, Hansen and Tjian, 1995, Sauer et al., 1995)
Secondary FlyBase IDs
References ( 36 )
Generate a list of	All references relating to this gene ( 36 )
List References by type	Research paper  ( 17 ) Supplementary material  ( 6 ) Review  ( 2 ) Personal communication to FlyBase  ( 5 ) FlyBase analysis  ( 1 ) DNA/RNA sequence record  ( 1 ) Curated genome annotation  ( 3 ) Website  ( 1 )
Recent research papers ( 2 )
	Baradaran-Heravi et al., 2012, Hum. Mol. Genet. 21(11): 2572--2587 Penetrance of biallelic SMARCAL1 mutations is associated with environmental and genetic disturbances of gene expression. [FBrf0218299] Hudry et al., 2011, BMC Biol. 9: 5 Visualization of protein interactions in living Drosophila embryos by the bimolecular fluorescence complementation assay. [FBrf0213066] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2011 Show reviews ...