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Gene Dmel\crq

General Information
Symbol	Dmel\crq	Species	D. melanogaster
Name	croquemort	Annotation symbol	CG4280
Feature type	protein_coding_gene	FlyBase ID	FBgn0015924
Gene Model Status	Current	Stock availability	9 publicly available
Also Known As	Cd36, cqr
Genomic Location
Chromosome (arm)	2L	Recombination map
Cytogenetic map	21C2-21C2	Sequence location	2L:448,254..453,024 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene croquemort is referred to in FlyBase by the symbol Dmel\crq (CG4280, FBgn0015924). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: scavenger receptor activity. There is experimental evidence that it is involved in the biological process: immune response-regulating cell surface receptor signaling pathway involved in phagocytosis; apoptotic process; phagocytosis; autophagic cell death; salivary gland cell autophagic cell death. 17 alleles are reported. The phenotypes of these alleles are annotated with: embryonic/larval glial cell; presumptive embryonic/larval central nervous system. It has 5 annotated transcripts and 5 annotated polypeptides. Protein features are: CD36 antigen. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages, during late larval stages, during early pupal stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: adult eye, adult crop, larval midgut. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, larval/adult central nervous system, adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1639387_s_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of crq. Gene sequence location is 2L:448254..453024.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 21C2-21C2   Limits computationally determined from genome sequence between P{lacW}l(2)k09610k09610&P{lacW}Sk09538a and P{PZ}l(2)1068510685&P{lacW}Tango14k00619
Experimentally Determined Cytological Location
Cytogenetic map Notes References 21C3-21C4   (determined by in situ hybridisation)   (BDGP Project Members, 1994-1999)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\crq for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.43 Gene model reviewed during 5.44
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) crq-RA FBtr0078087  NM_175943   2775   491 crq-RB FBtr0078088  NM_175944   2063   491 crq-RC FBtr0304741  NM_001258894   1938   491 crq-RD FBtr0331232  NM_001272895   2041   491 crq-RE FBtr0331233  NM_001272896   2714   491
Additional Transcript Data & Comments
Reported size (kB)	2.3 (compiled cDNA) (Franc et al., 1996)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein crq-PA   FBpp0077747   56.2   491   4.67     NP_787957   AAF51494 crq-PB   FBpp0077748   56.2   491   4.67     NP_787958   AAN10497 crq-PC   FBpp0293283   56.2   491   4.67     NP_001245823   AFH03500 crq-PD   FBpp0303674   56.2   491   4.67     NP_001259824   AGB92361 crq-PE   FBpp0303675   56.2   491   4.67     NP_001259825   AGB92362
Additional Polypeptide Data & Comments
Reported size (kDa)	68 (kD observed); 54 (kD predicted) (Franc et al., 1996)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • CD36 antigen (IPR002159)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA141769   AA439460   AA540956   AA541080   AA567795   AA697288   AA697650   AA698482   AA802004   AA990791   AE014134 AAF51494   AE014134 AAN10497   AC005269   AE014134 AFH03500   AE014134 AGB92361   AE014134 AGB92362   AI064105   AI064228   AI292419   AI293172   AI293261   AI389707   AI389749   AI405252   AI530854   AI531919   AX154659   AY070904 AAL48526   BF499720   BG634124   BI162829   BI171273   BI354242   BI358339   BI363384   BI364967   BI367850   BI369086   BI588810   BI613990   BI630663   BI631189   BI633734   BQ103461   BT133259   BZ286242   CA806578   CK659690   CL943642   CO179332   CO186684   CO262579   CO266441   CO284691   CO306055   CO309961   CO317337   CO318927   CO324026   CO332991   CO337620   CZ467502   CZ467566   CZ469467   CZ482668   CZ484534   CZ488176   CZ488177   EC061553   EC069869   EC085411   EC087706   EC087818   EC204134   EC212087   EC213355   EC213814   EC215893   EC220587   EC228258   EC237982   EC242382   EC244168   EC248120   EC262153   EC267024   ES690305   EV579338   EV587402   EV588968   GH756233   GH771918   GH773268   GH774474   GH782117   GH783593   GH785000   GH785913   GH787535   GH792329   GH803389   GH809806   GH814887   GH819624   GH825755   GH830348   GH831778   GH831895   GH833806   GH837735   GH839133   GH842058   GH844787   GH848938   GH855800   GH868613   GH869276   GH878155   GH878248   GH879010   GH880346   GH881978   GH884231   GH886549   GH903464   GH905077   GH905270   GH906928   GH908644   GH912430   GH920862   GH922236   GH931945   GH935690   Z31582 CAA83454   Z31583 CAA83455
UniProtKB/Swiss-Prot	Q27367
UniProtKB/TrEMBL	A4UZX7 Q8SZG1
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   anlage in statu nascendi   (Fisher et al., 2012) pole cell   (Fisher et al., 2012) embryonic stage 7 -- 8   anterior endoderm anlage   (Fisher et al., 2012) head mesoderm   (Fisher et al., 2012) pole cell   (Fisher et al., 2012) ventral ectoderm   (Fisher et al., 2012) embryonic stage 9 -- 10   anterior endoderm   (Fisher et al., 2012) crystal cell primordium   (Fisher et al., 2012) Comment:reported as crystal cell specific anlage germline cell   (Fisher et al., 2012) head mesoderm   (Fisher et al., 2012) plasmatocyte primordium   (Fisher et al., 2012) yolk nucleus   (Fisher et al., 2012) embryonic stage 11 -- 12   head mesoderm   (Fisher et al., 2012) plasmatocyte primordium   (Fisher et al., 2012) Comment:reported as plasmatocytes anlage procrystal cell   (Fisher et al., 2012) yolk nucleus   (Fisher et al., 2012) embryonic stage 13 -- 16   crystal cell   (Fisher et al., 2012) plasmatocyte   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
immunolocalization Stage Tissue/Position (including subcellular localization) Reference embryonic stage 11 -- 17   hemocyte   (Franc et al., 1996) Comment:expression starts late in embryonic stage 11 larval stage   embryonic/larval hemocyte   (Franc et al., 1996) pupal stage P5   salivary gland   • cytoplasm (Martin and Baehrecke, 2004) Comment:at 14 hr APF
Additional Descriptive Data
	crq protein is detected in hemocytes starting at late stage 11 of embryogenesis. (Franc et al., 1996) Expression of crq protein is observed in cytoplasm of dying salivary gland cells starting at 14 hours APF. (Martin and Baehrecke, 2004)
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: adult eye, adult crop, larval midgut. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, larval/adult central nervous system, adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    150.85 Larval Midgut    865.6 Larval Hindgut    364.4 Larval Malpighian Tubules    445.1 Larval Fat Body    180.2 Larval Salivary Gland    120.8 Larval Trachea    157.3 Larval Carcass    205.475 Adult Head    478.8 Adult Eye    519.675 Adult Brain    280.7 Adult Thoracic-Abdominal Ganglion    352 Adult Crop    601.4 Adult Midgut    258 Adult Hindgut    433.6 Adult Malpighian Tubules    215.8 Adult Fat Body    223.9 Adult Salivary Gland    151.9 Adult Heart    352.7 Adult VirginFemale Spermatheca    285 Adult InseminatedFemale Spermatheca    264.8 Adult Ovary    210.9 Adult Testis    72.7 Adult Male Accessory Gland    87.2 Adult Carcass    204.5 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    150.85 Larval Midgut  (865.6) Larval Hindgut    364.4 Larval Malpighian Tubules    445.1 Larval Fat Body    180.2 Larval Salivary Gland    120.8 Larval Trachea    157.3 Larval Carcass    205.475 Adult Head    478.8 Adult Eye  519.675 Adult Brain    280.7 Adult Thoracic-Abdominal Ganglion    352 Adult Crop  (601.4) Adult Midgut    258 Adult Hindgut    433.6 Adult Malpighian Tubules    215.8 Adult Fat Body    223.9 Adult Salivary Gland    151.9 Adult Heart    352.7 Adult VirginFemale Spermatheca    285 Adult InseminatedFemale Spermatheca    264.8 Adult Ovary    210.9 Adult Testis    72.7 Adult Male Accessory Gland    87.2 Adult Carcass    204.5 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    150.85 Larval Midgut    865.6 Larval Hindgut    364.4 Larval Malpighian Tubules    445.1 Larval Fat Body    180.2 Larval Salivary Gland    120.8 Larval Trachea    157.3 Larval Carcass    205.475 Adult Head    478.8 Adult Eye    519.675 Adult Brain    280.7 Adult Thoracic-Abdominal Ganglion    352 Adult Crop    601.4 Adult Midgut    258 Adult Hindgut    433.6 Adult Malpighian Tubules    215.8 Adult Fat Body    223.9 Adult Salivary Gland    151.9 Adult Heart    352.7 Adult VirginFemale Spermatheca    285 Adult InseminatedFemale Spermatheca    264.8 Adult Ovary    210.9 Adult Testis    72.7 Adult Male Accessory Gland    87.2 Adult Carcass    204.5 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    150.85 Larval Midgut    865.6 Larval Hindgut    364.4 Larval Malpighian Tubules    445.1 Larval Fat Body    180.2 Larval Salivary Gland    120.8 Larval Trachea    157.3 Larval Carcass    205.475 Adult Head    478.8 Adult Eye    519.675 Adult Brain    280.7 Adult Thoracic-Abdominal Ganglion    352 Adult Crop    601.4 Adult Midgut    258 Adult Hindgut    433.6 Adult Malpighian Tubules    215.8 Adult Fat Body    223.9 Adult Salivary Gland    151.9 Adult Heart    352.7 Adult VirginFemale Spermatheca    285 Adult InseminatedFemale Spermatheca    264.8 Adult Ovary    210.9 Adult Testis    72.7 Adult Male Accessory Gland    87.2 Adult Carcass    204.5 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    150.85 Larval Midgut    865.6 Larval Hindgut    364.4 Larval Malpighian Tubules    445.1 Larval Fat Body    180.2 Larval Salivary Gland    120.8 Larval Trachea    157.3 Larval Carcass    205.475 Adult Head    478.8 Adult Eye    519.675 Adult Brain    280.7 Adult Thoracic-Abdominal Ganglion    352 Adult Crop    601.4 Adult Midgut    258 Adult Hindgut    433.6 Adult Malpighian Tubules    215.8 Adult Fat Body    223.9 Adult Salivary Gland    151.9 Adult Heart    352.7 Adult VirginFemale Spermatheca    285 Adult InseminatedFemale Spermatheca    264.8 Adult Ovary    210.9 Adult Testis    72.7 Adult Male Accessory Gland    87.2 Adult Carcass    204.5 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    150.85 Larval Midgut  (865.6) Larval Hindgut    364.4 Larval Malpighian Tubules    445.1 Larval Fat Body    180.2 Larval Salivary Gland    120.8 Larval Trachea    157.3 Larval Carcass    205.475 Adult Head    478.8 Adult Eye  519.675 Adult Brain    280.7 Adult Thoracic-Abdominal Ganglion    352 Adult Crop  601.4 Adult Midgut    258 Adult Hindgut    433.6 Adult Malpighian Tubules    215.8 Adult Fat Body    223.9 Adult Salivary Gland    151.9 Adult Heart    352.7 Adult VirginFemale Spermatheca    285 Adult InseminatedFemale Spermatheca    264.8 Adult Ovary    210.9 Adult Testis    72.7 Adult Male Accessory Gland    87.2 Adult Carcass    204.5 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    150.85 Larval Midgut    865.6 Larval Hindgut    364.4 Larval Malpighian Tubules    445.1 Larval Fat Body    180.2 Larval Salivary Gland    120.8 Larval Trachea    157.3 Larval Carcass    205.475 Adult Head    478.8 Adult Eye    519.675 Adult Brain    280.7 Adult Thoracic-Abdominal Ganglion    352 Adult Crop    601.4 Adult Midgut    258 Adult Hindgut    433.6 Adult Malpighian Tubules    215.8 Adult Fat Body    223.9 Adult Salivary Gland    151.9 Adult Heart    352.7 Adult VirginFemale Spermatheca    285 Adult InseminatedFemale Spermatheca    264.8 Adult Ovary    210.9 Adult Testis    72.7 Adult Male Accessory Gland    87.2 Adult Carcass    204.5 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    150.85 Larval Midgut    865.6 Larval Hindgut    364.4 Larval Malpighian Tubules    445.1 Larval Fat Body    180.2 Larval Salivary Gland    120.8 Larval Trachea    157.3 Larval Carcass    205.475 Adult Head    478.8 Adult Eye    519.675 Adult Brain    280.7 Adult Thoracic-Abdominal Ganglion    352 Adult Crop    601.4 Adult Midgut    258 Adult Hindgut    433.6 Adult Malpighian Tubules    215.8 Adult Fat Body    223.9 Adult Salivary Gland    151.9 Adult Heart    352.7 Adult VirginFemale Spermatheca    285 Adult InseminatedFemale Spermatheca    264.8 Adult Ovary    210.9 Adult Testis    72.7 Adult Male Accessory Gland    87.2 Adult Carcass    204.5 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    478.8   NA  Eye    519.675   NA  Brain    280.7   150.85  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    352   NA  Crop    601.4   865.6  Midgut    258   364.4  Hindgut    433.6   445.1  Malpighian Tubules    215.8   180.2  Fat Body    223.9   120.8  Salivary Gland    151.9   NA  Heart    352.7   157.3  Trachea    NA   NA  VirginFemale Spermatheca    285   NA  InseminatedFemale Spermatheca    264.8   NA  Ovary    210.9   NA  Testis    72.7   NA  Male Accessory Gland    87.2   205.475  Carcass    204.5 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    14 central nervous system, larvae L3    18 central nervous system, pupae P8    12 head, virgin 1-day female    30 head, virgin 4-day female    24 head, virgin 20-day female    37 head, mated 1-day female    25 head, mated 4-day female    28 head, mated 20-day female    29 head, mated 1-day male    33 head, mated 4-day male    41 head, mated 20-day male    53 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    56 digestive system, larvae L3 wandering    116 digestive system, 1-day adult    33 digestive system, 4-day adult    23 digestive system, 20-day adult    24 fat body, larvae L3 wandering    7 fat body, white prepupae    30 fat body, pupae P8    52 carcass, larvae L3 wandering    20 carcass, 1-day adult    20 carcass, 4-day adult    17 carcass, 20-day adult    20 ovary, virgin 4-day female    77 ovary, mated 4-day female    48 testis, mated 4-day male    10 accessory gland, mated 4-day male    10 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    14 central nervous system, larvae L3    18 central nervous system, pupae P8    12 head, virgin 1-day female  (30) head, virgin 4-day female    24 head, virgin 20-day female  (37) head, mated 1-day female    25 head, mated 4-day female  (28) head, mated 20-day female  (29) head, mated 1-day male  (33) head, mated 4-day male  (41) head, mated 20-day male  (53) salivary gland, larvae L3 wandering    13 salivary gland, white prepupae  (56) digestive system, larvae L3 wandering  (116) digestive system, 1-day adult  (33) digestive system, 4-day adult    23 digestive system, 20-day adult    24 fat body, larvae L3 wandering    7 fat body, white prepupae  (30) fat body, pupae P8  (52) carcass, larvae L3 wandering    20 carcass, 1-day adult    20 carcass, 4-day adult    17 carcass, 20-day adult    20 ovary, virgin 4-day female  (77) ovary, mated 4-day female  (48) testis, mated 4-day male    10 accessory gland, mated 4-day male    10 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    14 central nervous system, larvae L3    18 central nervous system, pupae P8    12 head, virgin 1-day female    30 head, virgin 4-day female    24 head, virgin 20-day female    37 head, mated 1-day female    25 head, mated 4-day female    28 head, mated 20-day female    29 head, mated 1-day male    33 head, mated 4-day male    41 head, mated 20-day male    53 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    56 digestive system, larvae L3 wandering  (116) digestive system, 1-day adult    33 digestive system, 4-day adult    23 digestive system, 20-day adult    24 fat body, larvae L3 wandering    7 fat body, white prepupae    30 fat body, pupae P8    52 carcass, larvae L3 wandering    20 carcass, 1-day adult    20 carcass, 4-day adult    17 carcass, 20-day adult    20 ovary, virgin 4-day female    77 ovary, mated 4-day female    48 testis, mated 4-day male    10 accessory gland, mated 4-day male    10 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    14 central nervous system, larvae L3    18 central nervous system, pupae P8    12 head, virgin 1-day female    30 head, virgin 4-day female    24 head, virgin 20-day female    37 head, mated 1-day female    25 head, mated 4-day female    28 head, mated 20-day female    29 head, mated 1-day male    33 head, mated 4-day male    41 head, mated 20-day male    53 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    56 digestive system, larvae L3 wandering    116 digestive system, 1-day adult    33 digestive system, 4-day adult    23 digestive system, 20-day adult    24 fat body, larvae L3 wandering    7 fat body, white prepupae    30 fat body, pupae P8    52 carcass, larvae L3 wandering    20 carcass, 1-day adult    20 carcass, 4-day adult    17 carcass, 20-day adult    20 ovary, virgin 4-day female    77 ovary, mated 4-day female    48 testis, mated 4-day male    10 accessory gland, mated 4-day male    10 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    14 central nervous system, larvae L3    18 central nervous system, pupae P8    12 head, virgin 1-day female    30 head, virgin 4-day female    24 head, virgin 20-day female    37 head, mated 1-day female    25 head, mated 4-day female    28 head, mated 20-day female    29 head, mated 1-day male    33 head, mated 4-day male    41 head, mated 20-day male    53 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    56 digestive system, larvae L3 wandering    116 digestive system, 1-day adult    33 digestive system, 4-day adult    23 digestive system, 20-day adult    24 fat body, larvae L3 wandering    7 fat body, white prepupae    30 fat body, pupae P8    52 carcass, larvae L3 wandering    20 carcass, 1-day adult    20 carcass, 4-day adult    17 carcass, 20-day adult    20 ovary, virgin 4-day female    77 ovary, mated 4-day female    48 testis, mated 4-day male    10 accessory gland, mated 4-day male    10 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    14 central nervous system, larvae L3    18 central nervous system, pupae P8    12 head, virgin 1-day female  30 head, virgin 4-day female    24 head, virgin 20-day female  (37) head, mated 1-day female    25 head, mated 4-day female  28 head, mated 20-day female  29 head, mated 1-day male  (33) head, mated 4-day male  (41) head, mated 20-day male  (53) salivary gland, larvae L3 wandering    13 salivary gland, white prepupae  (56) digestive system, larvae L3 wandering  (116) digestive system, 1-day adult  (33) digestive system, 4-day adult    23 digestive system, 20-day adult    24 fat body, larvae L3 wandering    7 fat body, white prepupae  30 fat body, pupae P8  (52) carcass, larvae L3 wandering    20 carcass, 1-day adult    20 carcass, 4-day adult    17 carcass, 20-day adult    20 ovary, virgin 4-day female  (77) ovary, mated 4-day female  (48) testis, mated 4-day male    10 accessory gland, mated 4-day male    10 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    14 central nervous system, larvae L3    18 central nervous system, pupae P8    12 head, virgin 1-day female    30 head, virgin 4-day female    24 head, virgin 20-day female    37 head, mated 1-day female    25 head, mated 4-day female    28 head, mated 20-day female    29 head, mated 1-day male    33 head, mated 4-day male    41 head, mated 20-day male    53 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    56 digestive system, larvae L3 wandering  116 digestive system, 1-day adult    33 digestive system, 4-day adult    23 digestive system, 20-day adult    24 fat body, larvae L3 wandering    7 fat body, white prepupae    30 fat body, pupae P8    52 carcass, larvae L3 wandering    20 carcass, 1-day adult    20 carcass, 4-day adult    17 carcass, 20-day adult    20 ovary, virgin 4-day female    77 ovary, mated 4-day female    48 testis, mated 4-day male    10 accessory gland, mated 4-day male    10 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    14 central nervous system, larvae L3    18 central nervous system, pupae P8    12 head, virgin 1-day female    30 head, virgin 4-day female    24 head, virgin 20-day female    37 head, mated 1-day female    25 head, mated 4-day female    28 head, mated 20-day female    29 head, mated 1-day male    33 head, mated 4-day male    41 head, mated 20-day male    53 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    56 digestive system, larvae L3 wandering    116 digestive system, 1-day adult    33 digestive system, 4-day adult    23 digestive system, 20-day adult    24 fat body, larvae L3 wandering    7 fat body, white prepupae    30 fat body, pupae P8    52 carcass, larvae L3 wandering    20 carcass, 1-day adult    20 carcass, 4-day adult    17 carcass, 20-day adult    20 ovary, virgin 4-day female    77 ovary, mated 4-day female    48 testis, mated 4-day male    10 accessory gland, mated 4-day male    10 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages, during late larval stages, during early pupal stages, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    81 embryo 02-04hr    16 embryo 04-06hr    29 embryo 06-08hr    38 embryo 08-10hr    30 embryo 10-12hr    21 embryo 12-14hr    20 embryo 14-16hr    11 embryo 16-18hr    14 embryo 18-20hr    10 embryo 20-22hr    6 embryo 22-24hr    9 larva L1    12 larva L2    16 larva L3 12hr old    17 larva L3 puffstage 1-2    36 larva L3 puffstage 3-6    49 larva L3 puffstage 7-9    77 white prepupae new    94 white prepupae 12hr    125 white prepupae 24hr    68 pupae 2d postWPP    41 pupae 3d postWPP    37 pupae 4d postWPP    21 adult male 01day    35 adult male 05day    28 adult male 30day    25 adult female 01day    41 adult female 05day    69 adult female 30day    64 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (81) embryo 02-04hr    16 embryo 04-06hr  (29) embryo 06-08hr  (38) embryo 08-10hr  (30) embryo 10-12hr    21 embryo 12-14hr    20 embryo 14-16hr    11 embryo 16-18hr    14 embryo 18-20hr    10 embryo 20-22hr    6 embryo 22-24hr    9 larva L1    12 larva L2    16 larva L3 12hr old    17 larva L3 puffstage 1-2  (36) larva L3 puffstage 3-6  (49) larva L3 puffstage 7-9  (77) white prepupae new  (94) white prepupae 12hr  (125) white prepupae 24hr  (68) pupae 2d postWPP  (41) pupae 3d postWPP  (37) pupae 4d postWPP    21 adult male 01day  (35) adult male 05day  (28) adult male 30day    25 adult female 01day  (41) adult female 05day  (69) adult female 30day  (64) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    81 embryo 02-04hr    16 embryo 04-06hr    29 embryo 06-08hr    38 embryo 08-10hr    30 embryo 10-12hr    21 embryo 12-14hr    20 embryo 14-16hr    11 embryo 16-18hr    14 embryo 18-20hr    10 embryo 20-22hr    6 embryo 22-24hr    9 larva L1    12 larva L2    16 larva L3 12hr old    17 larva L3 puffstage 1-2    36 larva L3 puffstage 3-6    49 larva L3 puffstage 7-9    77 white prepupae new    94 white prepupae 12hr  (125) white prepupae 24hr    68 pupae 2d postWPP    41 pupae 3d postWPP    37 pupae 4d postWPP    21 adult male 01day    35 adult male 05day    28 adult male 30day    25 adult female 01day    41 adult female 05day    69 adult female 30day    64 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    81 embryo 02-04hr    16 embryo 04-06hr    29 embryo 06-08hr    38 embryo 08-10hr    30 embryo 10-12hr    21 embryo 12-14hr    20 embryo 14-16hr    11 embryo 16-18hr    14 embryo 18-20hr    10 embryo 20-22hr    6 embryo 22-24hr    9 larva L1    12 larva L2    16 larva L3 12hr old    17 larva L3 puffstage 1-2    36 larva L3 puffstage 3-6    49 larva L3 puffstage 7-9    77 white prepupae new    94 white prepupae 12hr    125 white prepupae 24hr    68 pupae 2d postWPP    41 pupae 3d postWPP    37 pupae 4d postWPP    21 adult male 01day    35 adult male 05day    28 adult male 30day    25 adult female 01day    41 adult female 05day    69 adult female 30day    64 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    81 embryo 02-04hr    16 embryo 04-06hr    29 embryo 06-08hr    38 embryo 08-10hr    30 embryo 10-12hr    21 embryo 12-14hr    20 embryo 14-16hr    11 embryo 16-18hr    14 embryo 18-20hr    10 embryo 20-22hr    6 embryo 22-24hr    9 larva L1    12 larva L2    16 larva L3 12hr old    17 larva L3 puffstage 1-2    36 larva L3 puffstage 3-6    49 larva L3 puffstage 7-9    77 white prepupae new    94 white prepupae 12hr    125 white prepupae 24hr    68 pupae 2d postWPP    41 pupae 3d postWPP    37 pupae 4d postWPP    21 adult male 01day    35 adult male 05day    28 adult male 30day    25 adult female 01day    41 adult female 05day    69 adult female 30day    64 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (81) embryo 02-04hr    16 embryo 04-06hr  29 embryo 06-08hr  (38) embryo 08-10hr  30 embryo 10-12hr    21 embryo 12-14hr    20 embryo 14-16hr    11 embryo 16-18hr    14 embryo 18-20hr    10 embryo 20-22hr    6 embryo 22-24hr    9 larva L1    12 larva L2    16 larva L3 12hr old    17 larva L3 puffstage 1-2  (36) larva L3 puffstage 3-6  (49) larva L3 puffstage 7-9  (77) white prepupae new  (94) white prepupae 12hr  (125) white prepupae 24hr  (68) pupae 2d postWPP  (41) pupae 3d postWPP  (37) pupae 4d postWPP    21 adult male 01day  (35) adult male 05day  28 adult male 30day    25 adult female 01day  (41) adult female 05day  (69) adult female 30day  (64) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    81 embryo 02-04hr    16 embryo 04-06hr    29 embryo 06-08hr    38 embryo 08-10hr    30 embryo 10-12hr    21 embryo 12-14hr    20 embryo 14-16hr    11 embryo 16-18hr    14 embryo 18-20hr    10 embryo 20-22hr    6 embryo 22-24hr    9 larva L1    12 larva L2    16 larva L3 12hr old    17 larva L3 puffstage 1-2    36 larva L3 puffstage 3-6    49 larva L3 puffstage 7-9    77 white prepupae new    94 white prepupae 12hr  125 white prepupae 24hr    68 pupae 2d postWPP    41 pupae 3d postWPP    37 pupae 4d postWPP    21 adult male 01day    35 adult male 05day    28 adult male 30day    25 adult female 01day    41 adult female 05day    69 adult female 30day    64 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    81 embryo 02-04hr    16 embryo 04-06hr    29 embryo 06-08hr    38 embryo 08-10hr    30 embryo 10-12hr    21 embryo 12-14hr    20 embryo 14-16hr    11 embryo 16-18hr    14 embryo 18-20hr    10 embryo 20-22hr    6 embryo 22-24hr    9 larva L1    12 larva L2    16 larva L3 12hr old    17 larva L3 puffstage 1-2    36 larva L3 puffstage 3-6    49 larva L3 puffstage 7-9    77 white prepupae new    94 white prepupae 12hr    125 white prepupae 24hr    68 pupae 2d postWPP    41 pupae 3d postWPP    37 pupae 4d postWPP    21 adult male 01day    35 adult male 05day    28 adult male 30day    25 adult female 01day    41 adult female 05day    69 adult female 30day    64 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    86 Schneider line 2 Sg4    21 embryonic 1182-4H    33 embryonic GM2    73 embryonic Kc167    27 embryonic S1    34 embryonic S3    38 leg disc CME L1    24 wing disc CME-W2    34 wing disc ML-DmD8    112 wing disc ML-DmD9    41 wing disc ML-DmD16-c3    24 wing disc ML-DmD21    28 wing disc ML-DmD32    22 haltere disc ML-DmD17-c3    52 eye-antennal disc ML-DmD11    30 antennal disc ML-DmD20-c5    28 mixed discs ML-DmD4-c1    166 CNS ML-DmBG1-c1    43 CNS ML-DmBG2-c2    65 tumorous blood cells mbn2    204 ovary fGS/OSS    9 ovary OSC    16 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (86) Schneider line 2 Sg4    21 embryonic 1182-4H  (33) embryonic GM2  (73) embryonic Kc167  (27) embryonic S1  (34) embryonic S3  (38) leg disc CME L1    24 wing disc CME-W2  (34) wing disc ML-DmD8  (112) wing disc ML-DmD9  (41) wing disc ML-DmD16-c3    24 wing disc ML-DmD21  (28) wing disc ML-DmD32    22 haltere disc ML-DmD17-c3  (52) eye-antennal disc ML-DmD11  (30) antennal disc ML-DmD20-c5  (28) mixed discs ML-DmD4-c1  (166) CNS ML-DmBG1-c1  (43) CNS ML-DmBG2-c2  (65) tumorous blood cells mbn2  (204) ovary fGS/OSS    9 ovary OSC    16 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    86 Schneider line 2 Sg4    21 embryonic 1182-4H    33 embryonic GM2    73 embryonic Kc167    27 embryonic S1    34 embryonic S3    38 leg disc CME L1    24 wing disc CME-W2    34 wing disc ML-DmD8  (112) wing disc ML-DmD9    41 wing disc ML-DmD16-c3    24 wing disc ML-DmD21    28 wing disc ML-DmD32    22 haltere disc ML-DmD17-c3    52 eye-antennal disc ML-DmD11    30 antennal disc ML-DmD20-c5    28 mixed discs ML-DmD4-c1  (166) CNS ML-DmBG1-c1    43 CNS ML-DmBG2-c2    65 tumorous blood cells mbn2  (204) ovary fGS/OSS    9 ovary OSC    16 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    86 Schneider line 2 Sg4    21 embryonic 1182-4H    33 embryonic GM2    73 embryonic Kc167    27 embryonic S1    34 embryonic S3    38 leg disc CME L1    24 wing disc CME-W2    34 wing disc ML-DmD8    112 wing disc ML-DmD9    41 wing disc ML-DmD16-c3    24 wing disc ML-DmD21    28 wing disc ML-DmD32    22 haltere disc ML-DmD17-c3    52 eye-antennal disc ML-DmD11    30 antennal disc ML-DmD20-c5    28 mixed discs ML-DmD4-c1    166 CNS ML-DmBG1-c1    43 CNS ML-DmBG2-c2    65 tumorous blood cells mbn2    204 ovary fGS/OSS    9 ovary OSC    16 ovary OSS    6 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    86 Schneider line 2 Sg4    21 embryonic 1182-4H    33 embryonic GM2    73 embryonic Kc167    27 embryonic S1    34 embryonic S3    38 leg disc CME L1    24 wing disc CME-W2    34 wing disc ML-DmD8    112 wing disc ML-DmD9    41 wing disc ML-DmD16-c3    24 wing disc ML-DmD21    28 wing disc ML-DmD32    22 haltere disc ML-DmD17-c3    52 eye-antennal disc ML-DmD11    30 antennal disc ML-DmD20-c5    28 mixed discs ML-DmD4-c1    166 CNS ML-DmBG1-c1    43 CNS ML-DmBG2-c2    65 tumorous blood cells mbn2    204 ovary fGS/OSS    9 ovary OSC    16 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (86) Schneider line 2 Sg4    21 embryonic 1182-4H  (33) embryonic GM2  (73) embryonic Kc167  27 embryonic S1  (34) embryonic S3  (38) leg disc CME L1    24 wing disc CME-W2  (34) wing disc ML-DmD8  (112) wing disc ML-DmD9  (41) wing disc ML-DmD16-c3    24 wing disc ML-DmD21  28 wing disc ML-DmD32    22 haltere disc ML-DmD17-c3  (52) eye-antennal disc ML-DmD11  30 antennal disc ML-DmD20-c5  28 mixed discs ML-DmD4-c1  (166) CNS ML-DmBG1-c1  (43) CNS ML-DmBG2-c2  (65) tumorous blood cells mbn2  (204) ovary fGS/OSS    9 ovary OSC    16 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    86 Schneider line 2 Sg4    21 embryonic 1182-4H    33 embryonic GM2    73 embryonic Kc167    27 embryonic S1    34 embryonic S3    38 leg disc CME L1    24 wing disc CME-W2    34 wing disc ML-DmD8  112 wing disc ML-DmD9    41 wing disc ML-DmD16-c3    24 wing disc ML-DmD21    28 wing disc ML-DmD32    22 haltere disc ML-DmD17-c3    52 eye-antennal disc ML-DmD11    30 antennal disc ML-DmD20-c5    28 mixed discs ML-DmD4-c1  (166) CNS ML-DmBG1-c1    43 CNS ML-DmBG2-c2    65 tumorous blood cells mbn2  (204) ovary fGS/OSS    9 ovary OSC    16 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    86 Schneider line 2 Sg4    21 embryonic 1182-4H    33 embryonic GM2    73 embryonic Kc167    27 embryonic S1    34 embryonic S3    38 leg disc CME L1    24 wing disc CME-W2    34 wing disc ML-DmD8    112 wing disc ML-DmD9    41 wing disc ML-DmD16-c3    24 wing disc ML-DmD21    28 wing disc ML-DmD32    22 haltere disc ML-DmD17-c3    52 eye-antennal disc ML-DmD11    30 antennal disc ML-DmD20-c5    28 mixed discs ML-DmD4-c1    166 CNS ML-DmBG1-c1    43 CNS ML-DmBG2-c2    65 tumorous blood cells mbn2    204 ovary fGS/OSS    9 ovary OSC    16 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    11 heat shock, 4-day adult    23 Cadmium 50 mM 6 hrs, larvae L3    24 Cadmium 50 mM 12 hrs, larvae L3    50 Cadmium 50 mM 48 hrs, 4-day adult    26 Cadmium 100 mM 48 hrs, 4-day adult    39 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    24 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    22 Ethanol 2.5% 3 hrs, larvae L3    36 Ethanol 5% 3 hrs, larvae L3    30 Ethanol 10% 3 hrs, larvae L3    17 Caffeine 1.5 mg/ml 4 hrs, larvae L3    44 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    41 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    36 Paraquat 10 mM 48 hrs, 4-day adult    34 Rotenone 2 μg 12 hrs, larvae L3    40 Rotenone 8 μg 12 hrs, larvae L3    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    11 heat shock, 4-day adult    23 Cadmium 50 mM 6 hrs, larvae L3    24 Cadmium 50 mM 12 hrs, larvae L3  (50) Cadmium 50 mM 48 hrs, 4-day adult  26 Cadmium 100 mM 48 hrs, 4-day adult  (39) Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    24 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    22 Ethanol 2.5% 3 hrs, larvae L3  (36) Ethanol 5% 3 hrs, larvae L3  (30) Ethanol 10% 3 hrs, larvae L3    17 Caffeine 1.5 mg/ml 4 hrs, larvae L3  (44) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (41) Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult  (36) Paraquat 10 mM 48 hrs, 4-day adult  (34) Rotenone 2 μg 12 hrs, larvae L3  (40) Rotenone 8 μg 12 hrs, larvae L3    18 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    11 heat shock, 4-day adult    23 Cadmium 50 mM 6 hrs, larvae L3    24 Cadmium 50 mM 12 hrs, larvae L3    50 Cadmium 50 mM 48 hrs, 4-day adult    26 Cadmium 100 mM 48 hrs, 4-day adult    39 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    24 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    22 Ethanol 2.5% 3 hrs, larvae L3    36 Ethanol 5% 3 hrs, larvae L3    30 Ethanol 10% 3 hrs, larvae L3    17 Caffeine 1.5 mg/ml 4 hrs, larvae L3    44 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    41 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    36 Paraquat 10 mM 48 hrs, 4-day adult    34 Rotenone 2 μg 12 hrs, larvae L3    40 Rotenone 8 μg 12 hrs, larvae L3    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    11 heat shock, 4-day adult    23 Cadmium 50 mM 6 hrs, larvae L3    24 Cadmium 50 mM 12 hrs, larvae L3    50 Cadmium 50 mM 48 hrs, 4-day adult    26 Cadmium 100 mM 48 hrs, 4-day adult    39 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    24 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    22 Ethanol 2.5% 3 hrs, larvae L3    36 Ethanol 5% 3 hrs, larvae L3    30 Ethanol 10% 3 hrs, larvae L3    17 Caffeine 1.5 mg/ml 4 hrs, larvae L3    44 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    41 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    36 Paraquat 10 mM 48 hrs, 4-day adult    34 Rotenone 2 μg 12 hrs, larvae L3    40 Rotenone 8 μg 12 hrs, larvae L3    18 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    11 heat shock, 4-day adult    23 Cadmium 50 mM 6 hrs, larvae L3    24 Cadmium 50 mM 12 hrs, larvae L3    50 Cadmium 50 mM 48 hrs, 4-day adult    26 Cadmium 100 mM 48 hrs, 4-day adult    39 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    24 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    22 Ethanol 2.5% 3 hrs, larvae L3    36 Ethanol 5% 3 hrs, larvae L3    30 Ethanol 10% 3 hrs, larvae L3    17 Caffeine 1.5 mg/ml 4 hrs, larvae L3    44 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    41 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    36 Paraquat 10 mM 48 hrs, 4-day adult    34 Rotenone 2 μg 12 hrs, larvae L3    40 Rotenone 8 μg 12 hrs, larvae L3    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    11 heat shock, 4-day adult    23 Cadmium 50 mM 6 hrs, larvae L3    24 Cadmium 50 mM 12 hrs, larvae L3  (50) Cadmium 50 mM 48 hrs, 4-day adult  26 Cadmium 100 mM 48 hrs, 4-day adult  (39) Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    24 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    22 Ethanol 2.5% 3 hrs, larvae L3  (36) Ethanol 5% 3 hrs, larvae L3  30 Ethanol 10% 3 hrs, larvae L3    17 Caffeine 1.5 mg/ml 4 hrs, larvae L3  (44) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (41) Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult  (36) Paraquat 10 mM 48 hrs, 4-day adult  (34) Rotenone 2 μg 12 hrs, larvae L3  (40) Rotenone 8 μg 12 hrs, larvae L3    18 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    11 heat shock, 4-day adult    23 Cadmium 50 mM 6 hrs, larvae L3    24 Cadmium 50 mM 12 hrs, larvae L3    50 Cadmium 50 mM 48 hrs, 4-day adult    26 Cadmium 100 mM 48 hrs, 4-day adult    39 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    24 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    22 Ethanol 2.5% 3 hrs, larvae L3    36 Ethanol 5% 3 hrs, larvae L3    30 Ethanol 10% 3 hrs, larvae L3    17 Caffeine 1.5 mg/ml 4 hrs, larvae L3    44 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    41 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    36 Paraquat 10 mM 48 hrs, 4-day adult    34 Rotenone 2 μg 12 hrs, larvae L3    40 Rotenone 8 μg 12 hrs, larvae L3    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    11 heat shock, 4-day adult    23 Cadmium 50 mM 6 hrs, larvae L3    24 Cadmium 50 mM 12 hrs, larvae L3    50 Cadmium 50 mM 48 hrs, 4-day adult    26 Cadmium 100 mM 48 hrs, 4-day adult    39 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    24 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    22 Ethanol 2.5% 3 hrs, larvae L3    36 Ethanol 5% 3 hrs, larvae L3    30 Ethanol 10% 3 hrs, larvae L3    17 Caffeine 1.5 mg/ml 4 hrs, larvae L3    44 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    41 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    36 Paraquat 10 mM 48 hrs, 4-day adult    34 Rotenone 2 μg 12 hrs, larvae L3    40 Rotenone 8 μg 12 hrs, larvae L3    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_23 mE1_20_mRNA_expression_cluster_03
External Data & Images
Linkouts	BDGP expression data • RE02070 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0015924 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG4280-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for crq Stages(s) 1-3 Stages(s) 4-6 Stages(s) 7-8 Stages(s) 9-10 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal | pupal stage crqKG01679 viable crqEY14489 viable, with Scer\GAL4pnr-MD237 crqGD784 Sterility Allele fertile crqEY14489 Other Phenotypes Allele neuroanatomy defective crqdsRNA.681-1203 crqdsRNA.1209-1737 Phenotype manifest in Allele embryonic/larval glial cell crqdsRNA.1209-1737 crqdsRNA.681-1203 presumptive embryonic/larval central nervous system crqdsRNA.1209-1737 crqdsRNA.681-1203
Classical Alleles ( 8 )
For All Classical Alleles Show
Allele of crq Class Mutagen Stocks Known lesion crqc01936 piggyBac transposase 1 -- crqEY14489 P-element activity 1 -- crqf00184 piggyBac transposase 1 -- crqf05578 piggyBac transposase 1 -- crqKG01679 P-element activity 1 Yes crqc01854 piggyBac transposase 0 -- crqc04725 piggyBac transposase 0 -- crqf02039 piggyBac transposase 0 --
Alleles Carried on Transgenic Constructs ( 9 )
For All Alleles Carried on Transgenic Constructs Show
Allele of crq Class Mutagen Stocks Known lesion crqGD784 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes crqGL01185 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes crqHMS01997 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes crqdsRNA.1209-1737 in vitro construct - RNAi 0 Yes crqdsRNA.681-1203 in vitro construct - RNAi 0 Yes crqdsRNA.cMa in vitro construct - RNAi 0 Yes crqdsRNA.cSa in vitro construct - RNAi 0 -- crqNIG.31655R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes crqScer\UAS.cFa in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(2L)al (Franc et al., 1999) Df(2L)TE99(Z)XW88 (Franc et al., 1999)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD784} NA P{NIG.31655R} NA P{TRiP.GL01185} NA P{TRiP.HMS01997} NA P{UAS-crq.F} NA GAL4 construct P{crq-GAL4.A} No P{crq-GAL4.U} No P{crq-GAL4} No
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EPgy2}crqEY14489 NA miscellaneous insertions P{SUPor-P}crqKG01679 NA P{UASp-YFP.Rab23}CG416402 NA PBac{PB}crqc01854 NA PBac{PB}crqc01936 NA PBac{PB}crqc04725 NA PBac{WH}crqf00184 NA PBac{WH}crqf02039 NA PBac{WH}crqf05578 NA
Gene Ontology: Function, Process & Cellular Component ( 14 unique terms )
Terms Based on Experimental Evidence ( 5 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
apoptotic process inferred from mutant phenotype (Franc et al., 1999) autophagic cell death inferred from expression pattern (Gorski et al., 2003) immune response-regulating cell surface receptor signaling pathway involved in phagocytosis inferred from direct assay (Stuart et al., 2005) phagocytosis inferred from mutant phenotype (Franc et al., 1999) salivary gland cell autophagic cell death inferred from expression pattern (Gorski et al., 2003)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 12 terms )
Molecular Function
CV term Evidence References
scavenger receptor activity inferred from sequence or structural similarity with emp (Franc et al., 1996) non-traceable author statement (Swiss-Prot Project Members, 1999.4.15, Lemaitre, 2000.12.20) traceable author statement (Franc and White, 2000, Evans and Banerjee, 2003)
Biological Process
CV term Evidence References
apoptotic process non-traceable author statement (Swiss-Prot Project Members, 1999.4.15) traceable author statement (Kimbrell and Beutler, 2001, Franc, 2002) autophagic cell death traceable author statement (Thummel, 2001) cell adhesion inferred from electronic annotation with InterPro:IPR002159 (FlyBase Curators et al., 2004-) defense response non-traceable author statement (Lemaitre, 2000.12.20) immune response traceable author statement (Schneider, 2000, Kimbrell and Beutler, 2001) macrophage activation traceable author statement (Evans and Banerjee, 2003) phagocytosis traceable author statement (Meister, 2004, Brennan and Anderson, 2004) phagocytosis, engulfment traceable author statement (Franc and White, 2000, Thummel, 2001, Franc, 2002) regulation of phagocytosis traceable author statement (Evans and Banerjee, 2003)
Cellular Component
CV term Evidence References
integral to plasma membrane non-traceable author statement (Swiss-Prot Project Members, 1999.4.15, Lemaitre, 2000.12.20) membrane inferred from electronic annotation with InterPro:IPR002159 (FlyBase Curators et al., 2004-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions crq allele Gene References unspecified Adgf-A (Dolezal et al., 2005)
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 59475 DroID - A comprehensive database of gene and protein interactions. • FBgn0015924 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 33219
Orthologs
OrthoDB Orthologs (53) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6KH3DQ Dipteran inclusive ortholog search EOG6HMJJP Insect inclusive ortholog search EOG6TTFD6 Arthropod inclusive ortholog search EOG634TN8 Metazoa inclusive ortholog search No orthologs identified
Orthologs in Drosophila Species (EOG6KH3DQ)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\crq     Drosophila simulans   Dsim\crq Y   Drosophila sechellia   Dsec\GM16668 Y   Drosophila erecta   Dere\GG24648 Y   Drosophila yakuba   Dyak\crq Y   Drosophila ananassae   Dana\GF24773 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA18078 Y   Drosophila persimilis   Dper\GL19261 Y   Drosophila willistoni   Dwil\GK14659 Y   Drosophila virilis   Dvir\GJ19730 Y   Drosophila mojavensis   Dmoj\GI18033 Y   Drosophila grimshawi   Dgri\GH10516 Y
Orthologs in non-Drosophila Dipterans (EOG6HMJJP)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\SCRBQ3   Aedes aegypti Yellow fever mosquito  Aaeg\AAEL009423   Anopheles gambiae Malaria mosquito  Agam\SCRBQ2   Anopheles gambiae Malaria mosquito  Agam\SCRBQ3   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ801955   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ012252
Orthologs in non-Dipteran Insects (EOG6TTFD6)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB53014 Y Apis mellifera Western honey bee  Amel\GB44045 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG007445 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG011340 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH16891 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH18246 Y Atta cephalotes Leafcutter ant  Acep\ACEP19494 Y Atta cephalotes Leafcutter ant  Acep\ACEP11359 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO16547 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO13451 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL22535 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL16324 Y Linepithema humile Argentine ant  Lhum\LH17139 Y Linepithema humile Argentine ant  Lhum\LH26186 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB19375 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB11199 Y Solenopsis invicta Red fire ant  Sinv\SINV16884 Y Solenopsis invicta Red fire ant  Sinv\SINV14639 Y Acyrthosiphon pisum Pea aphid  Apim\ACYPI009159 Y Bombyx mori Silkmoth  Bmor\BGIBMGA010476 Y Bombyx mori Silkmoth  Bmor\BGIBMGA010477 Y Pediculus humanus Human body louse  Phum\PHUM351630 Y Pediculus humanus Human body louse  Phum\PHUM351640 Y Tribolium castaneum Red flour beetle  Tcas\crq Y Tribolium castaneum Red flour beetle  Tcas\TC012757 Y Tribolium castaneum Red flour beetle  Tcas\TC012758 Y Tribolium castaneum Red flour beetle  Tcas\TC012756 Y
Orthologs in non-Insect Arthropods (EOG634TN8)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\COI Y Daphnia pulex Water flea  Dpux\JGI_V11_307609 Y Daphnia pulex Water flea  Dpux\rbcL Y Daphnia pulex Water flea  Dpux\rbcL Y Daphnia pulex Water flea  Dpux\nad5 Y Ixodes scapularis Deer tick  Isca\ISCW010934 Y Ixodes scapularis Deer tick  Isca\ISCW003371 Y Ixodes scapularis Deer tick  Isca\ISCW023721 Y
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\crq Drosophila sechellia Dsec\GM16668 Drosophila erecta Dere\GG24648 Drosophila yakuba Dyak\crq Drosophila ananassae Dana\GF24773 Drosophila pseudoobscura pseudoobscura Dpse\GA18078 Drosophila persimilis Dper\GL19261 Drosophila willistoni Dwil\GK14659 Drosophila virilis Dvir\GJ19730 Drosophila mojavensis Dmoj\GI18033 Drosophila grimshawi Dgri\GH10516
Stocks & Reagents
Stocks Listed in FlyBase ( 9 )
Bloomington	42811 y1 v1; P{TRiP.GL01185}attP2 40831 y1 v1; P{TRiP.HMS01997}attP40 20939 y1 w67c23; P{EPgy2}crqEY14489 14900 y1 w67c23; P{SUPor-P}crqKG01679/CyO
Harvard	- PBac{PB}crqc01936 - PBac{WH}crqf00184 - PBac{WH}crqf05578
VDRC	v45883 w1118; P{GD784}v45883 v45884 w1118; P{GD784}v45884/TM3
Genomic Clones ( 1 )
	BACR16A12 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 101 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RE02070
Other clones	FI18608
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT14355 AT30195 GH04368 GH04553 GH15314 GH16282 GH16411 GH20945 GH20995 GH25195 GM03710 GM15880 HL01780 HL02193 HL02933 HL04769 LD14037 LD20160 LD20869 LD34670 LP17627 RE13006 RE45081 RE48176 RE50176 RE53708 RE55170 RH30245 RH43263 RH60717 SD01593 SD03226 SD27883
Other clones	54166 65359 147442 CK02400 Dmel_dig_016798_0688_0433 Dmel_neb_005635_0145_1274 Dmel_neb_010856_0126_0780 EK022206 EK059130 EK085828 EK146431 EK166550 EK192311 EK220033 EK250161 EK267720 EK275235 EK305346 EN14929 ESG014a.E21_C02 RH59946 RP003002692 RP003053762 RP003070995 RP003074750 RP003088745 RP003091480 RP003093609 RP003097098 RP003121464 RP003133677 RP003140942 RP003159296 RP003195139 RP003220518 RP003240060 RP003243388 RP003255942 RP003298456 RP003305505 RP003321088 RP003323689 RP003379933 RP003382147 RP003386575 RP003390344 RP003399818 RP003409525 RP003411265 RP003417592 RP003423686 RP003434389 RP003438721 RP003461464 RP003471890 RP003478229 RP003491124 RP003511134 RP003512875 RP003516079 RP003540342 RP003575083 RP003589602 RP003662842 RP003678263 UUGC0867
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0015924 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 33219
Antibody Information
	polyclonal (Franc et al., 1996)
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: crq CG4280 (Guan, 1999.11)
Source for database merge of	Source for merge of: crq anon-WO0140519.8 (FlyBase, 1996-)
Additional comments	Source for merge of crq anon-WO0140519.8 was sequence comparison (date:051113). (FlyBase, 1996-)
Other Comments
	Gene expression is increased in response to the presence of two copies of Scer\GAL4hs.PB. (Liu and Lehmann, 2008) dsRNA made from templates generated with primers directed against this gene tested in RNAi screen for effects on Kc167 and S2R+ cell morphology. (Kiger et al., 2003) New annotation (CG31655) in release 3 of the genome annotation. CG31655 merged into CG4280 in release 3 of the genome annotation, October 2002. (FlyBase Genome Annotators, 2002-2003) crq is essential for the phagocytosis of apoptotic corpses but not required for the engulfment of bacteria. (Franc et al., 1999) Encodes a macrophage receptor for apoptotic cells. (Franc et al., 1996)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_175943 NM_175944 NM_001258894 NM_001272895 NM_001272896 RefSeq (Proteins) • NP_787957 NP_787958 NP_001245823 NP_001259824 NP_001259825 DDBJ / EMBL / GenBank • AAF51494 AAL48526 AAN10497 AC005269 AFH03500 AGB92361 AGB92362 AX154659 AY070904 BI162829 BZ286242 CAA83454 CAA83455 CL943642 CZ467502 CZ467566 CZ469467 CZ482668 CZ484534 CZ488176 CZ488177 Z31582 Z31583 Entrez Gene - A searchable database of RefSeq genes. • 33219 UniProtKB/Swiss-Prot • Q27367 UniProtKB/TrEMBL • A4UZX7 Q8SZG1
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • CD36 antigen (IPR002159) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • RE02070
Linkouts
	BioGRID - A database of protein and genetic interactions • 59475 DroID - A comprehensive database of gene and protein interactions. • FBgn0015924 DRSC - Results from RNAi screens. • FBgn0015924 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0015924 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG4280-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0015924 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 33219 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 33219 modMine - Data generated by the modENCODE project. • FBgn0015924
Synonyms & Secondary IDs ( 15 )
Reported As
Symbol Synonym	anon-WO0140519.8   Cd36 (Schloetterer and Agis, 2002, ) CD36 (McPhee et al., 2010) CG4280 (Lee et al., 2003, Pal et al., 2007, Nichols and Vogt, 2008, Ni et al., 2010.12.1) CG31655 (Mackay et al., 2012) cqm (Dimarcq et al., 1997) cqr (Nelliot et al., 2006) Cqr (Paladi and Tepass, 2004) crq (Stuart et al., 2005, Kocks et al., 2005, Stramer et al., 2005, Ulvila et al., 2006, Bruckner et al., 2004, Wood et al., 2006, Zhang et al., 2007, Li and Baker, 2007, Christophides et al., 2002, Liu and Lehmann, 2008, Isogai et al., 2007, Stofanko et al., 2010, Cuttell et al., 2008, Venkatachalam et al., 2008, Nelson et al., 2005, Lee et al., 2008, Honti et al., 2010, Nichols and Vogt, 2008, Charroux and Royet, 2009, Vlisidou et al., 2009, Osman et al., 2009, Sackton et al., 2007, Shia et al., 2009, Baer et al., 2010, McPhee et al., 2010, Clark et al., 2011, Vogt et al., 2009, Igboin et al., 2011, Kuraishi et al., 2007, Japanese National Institute of Genetics, 2012.5.21) Crq (Pal et al., 2007, Korolchuk et al., 2007, Lin et al., 2008, Bunt et al., 2010) CRQ (Kurant et al., 2008, Pirraglia et al., 2006) D-CD36
Name Synonym	CD36-like   croquemort (Hetru, 1994.3.23, Hetru, 1994.3.23, Franc et al., 1996, Stramer et al., 2005, Wood et al., 2006, Nelliot et al., 2006, Li and Baker, 2007, Christophides et al., 2002, Zeitouni et al., 2007, Venkatachalam et al., 2008, Nelson et al., 2005, Nichols and Vogt, 2008, Shia et al., 2009, McPhee et al., 2010, Beckstead et al., 2007, Clark et al., 2011) Croquemort (Stuart et al., 2005, Benton et al., 2007, Stofanko et al., 2010, Pirraglia et al., 2006, Cuttell et al., 2008, Paladi and Tepass, 2004, Korolchuk et al., 2007, Lin et al., 2008, Baer et al., 2010, Bunt et al., 2010, Charroux and Royet, 2009, Igboin et al., 2011, Kuraishi et al., 2007)
Secondary FlyBase IDs
	FBgn0011572 FBgn0044547 FBgn0051655
References ( 130 )
Generate a list of	All references relating to this gene ( 130 )
List References by type	Research paper  ( 72 ) Supplementary material  ( 8 ) Review  ( 20 ) Personal communication to FlyBase  ( 8 ) Abstract  ( 10 ) FlyBase analysis  ( 3 ) DNA/RNA sequence record  ( 2 ) Stock list  ( 1 ) Curated genome annotation  ( 2 ) Protein sequence record  ( 1 ) Website  ( 1 ) Patent  ( 1 ) Note  ( 1 )
Recent research papers ( 5 )
	Mackay et al., 2012, Nature 482(7384): 173--178 The Drosophila melanogaster Genetic Reference Panel. [FBrf0217434] Poels et al., 2012, Cell Death Differ. 19(10): 1590--1601 Autophagy and phagocytosis-like cell cannibalism exert opposing effects on cellular survival during metabolic stress. [FBrf0219353] Clark et al., 2011, Curr. Biol. 21(19): 1672--1677 Multiple TGF-β Superfamily Signals Modulate the Adult Drosophila Immune Response. [FBrf0216429] Herboso et al., 2011, Int. J. Dev. Biol. 55(6): 603--611 Expression of the Scavenger Receptor Class B type I (SR-BI) family in Drosophila melanogaster. [FBrf0216272] Igboin et al., 2011, Infect. Immun. 79(1): 449--458 Porphyromonas gingivalis-Host Interactions in a Drosophila melanogaster Model. [FBrf0212619] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2011 Show reviews ...