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Gene Dmel\mod(r)

General Information
Symbol	Dmel\mod(r)	Species	D. melanogaster
Name	modifier of rudimentary	Annotation symbol	CG17828
Feature type	protein_coding_gene	FlyBase ID	FBgn0016038
Gene Model Status	Current	Stock availability	5 publicly available
Also Known As	EG:115C2.5
Genomic Location
Chromosome (arm)	X	Recombination map
Cytogenetic map	1B12-1B12	Sequence location	X:515,563..517,084 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene modifier of rudimentary is referred to in FlyBase by the symbol Dmel\mod(r) (CG17828, FBgn0016038). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. Based on sequence similarity, it is predicted to be involved in the biological process: ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway. 8 alleles are reported. The phenotype of these alleles is annotated with: wing. It has 6 annotated transcripts and 6 annotated polypeptides. Protein features are: Modifier of rudimentary, Modr. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages, during late larval stages, at stages throughout the pupal period, in stages of adults of both sexes. Summary of FlyAtlas Anatomical Expression Data: Many larval and adult organs/tissues expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: adult eye. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval fat body, larval/adult salivary gland, larval trachea, adult ovary, adult male reproductive system. Comments on Affy2 ProbeSet: ProbeSet 1625032_s_at completely aligns to an exonic region common to each of the 4 FlyBase-annotated transcript isoforms of mod(r). Gene sequence location is X:515563..517084.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 1B12-1B12   Limits computationally determined from genome sequence between P{EP}svrEP356&P{EP}argEP452 and P{EP}DreddEP1412&P{EP}Suv4-20EP1216a
Experimentally Determined Cytological Location
Cytogenetic map Notes References 1B-1B   (determined by in situ hybridisation)   (Begley et al., 1995)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\mod(r) for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.47
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) mod(r)-RA FBtr0089726  NM_080295   1343   200 mod(r)-RB FBtr0089723  NM_166849   1099   196 mod(r)-RC FBtr0089725  NM_166848   1332   200 mod(r)-RD FBtr0089724  NM_166850   1331   196 mod(r)-RE FBtr0335122  NM_001272171   1323   196 mod(r)-RF FBtr0335123  NM_001272172   1294   200
Additional Transcript Data & Comments
Reported size (kB)	1.3 (northern blot) (Begley et al., 1995)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein mod(r)-PA   FBpp0088667   23.0   200   4.56     NP_525034   AAF45525 mod(r)-PB   FBpp0088664   22.5   196   4.61     NP_726680   AAF45526 mod(r)-PC   FBpp0088666   23.0   200   4.56     NP_726679   AAN09016 mod(r)-PD   FBpp0088665   22.5   196   4.61     NP_726681   AAN09017 mod(r)-PE   FBpp0307122   22.5   196   4.61     NP_001259100   AGB94946 mod(r)-PF   FBpp0307123   23.0   200   4.56     NP_001259101   AGB94947
Additional Polypeptide Data & Comments
Reported size (kDa)	200 (aa) (Begley et al., 1995)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Modifier of rudimentary, Modr (IPR009851)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA140751   AA140752   AA141634   AE014298 AAF45525   AE014298 AAF45526   AE014298 AAN09016   AE014298 AAN09017   AE014298 AGB94946   AE014298 AGB94947   AI064532   AI113532   AI258241   AI517606   AJ271295 CAB76375   AL031581 CAA20890   AX201694   AY070595 AAL48066   BF494480   BF495457   BG640536   BG641002   BH900899   BI486221   BT122033   CO177982   CO189640   CO271266   CO273276   CO274231   CO292476   CO305089   CO314493   CO320103   EC058280   EC059464   EC075102   EC197021   EC197996   EC215970   GH944627   GH945621   GH954483   GH960446   GH960584   GH960966   GH962124   GH965304   GH966016   GH967916   GH968364   GH969660   GH971365   GH973024   GH977679   GH977720   GH978530   GH980844
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	O77259 Q7YZA5 Q9N6W9
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism   (Fisher et al., 2012) embryonic stage 7 -- 8   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 9 -- 10   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 11 -- 12   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 13 -- 16   embryonic/larval midgut   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) northern blot Stage Tissue/Position (including subcellular localization) Reference adult stage | female     (Begley et al., 1995) adult stage | male     (Begley et al., 1995)
Additional Descriptive Data
	mod(r) transcripts are present in adult males and females. (Begley et al., 1995)
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Many larval and adult organs/tissues expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: adult eye. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval fat body, larval/adult salivary gland, larval trachea, adult ovary, adult male reproductive system. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    201.275 Larval Midgut    105.2 Larval Hindgut    156 Larval Malpighian Tubules    210.3 Larval Fat Body    176.9 Larval Salivary Gland    184.3 Larval Trachea    200.25 Larval Carcass    96.975 Adult Head    180.1 Adult Eye    528.825 Adult Brain    260.3 Adult Thoracic-Abdominal Ganglion    205.2 Adult Crop    157.6 Adult Midgut    115.2 Adult Hindgut    175.3 Adult Malpighian Tubules    113.9 Adult Fat Body    81.9 Adult Salivary Gland    293.4 Adult Heart    132.025 Adult VirginFemale Spermatheca    60.2 Adult InseminatedFemale Spermatheca    56.7 Adult Ovary    213.9 Adult Testis    483.2 Adult Male Accessory Gland    171.9 Adult Carcass    96.3 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    201.275 Larval Midgut    105.2 Larval Hindgut    156 Larval Malpighian Tubules    210.3 Larval Fat Body    176.9 Larval Salivary Gland    184.3 Larval Trachea    200.25 Larval Carcass    96.975 Adult Head    180.1 Adult Eye  528.825 Adult Brain    260.3 Adult Thoracic-Abdominal Ganglion    205.2 Adult Crop    157.6 Adult Midgut    115.2 Adult Hindgut    175.3 Adult Malpighian Tubules    113.9 Adult Fat Body    81.9 Adult Salivary Gland    293.4 Adult Heart    132.025 Adult VirginFemale Spermatheca    60.2 Adult InseminatedFemale Spermatheca    56.7 Adult Ovary    213.9 Adult Testis    483.2 Adult Male Accessory Gland    171.9 Adult Carcass    96.3 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    201.275 Larval Midgut    105.2 Larval Hindgut    156 Larval Malpighian Tubules    210.3 Larval Fat Body    176.9 Larval Salivary Gland    184.3 Larval Trachea    200.25 Larval Carcass    96.975 Adult Head    180.1 Adult Eye    528.825 Adult Brain    260.3 Adult Thoracic-Abdominal Ganglion    205.2 Adult Crop    157.6 Adult Midgut    115.2 Adult Hindgut    175.3 Adult Malpighian Tubules    113.9 Adult Fat Body    81.9 Adult Salivary Gland    293.4 Adult Heart    132.025 Adult VirginFemale Spermatheca    60.2 Adult InseminatedFemale Spermatheca    56.7 Adult Ovary    213.9 Adult Testis    483.2 Adult Male Accessory Gland    171.9 Adult Carcass    96.3 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    201.275 Larval Midgut    105.2 Larval Hindgut    156 Larval Malpighian Tubules    210.3 Larval Fat Body    176.9 Larval Salivary Gland    184.3 Larval Trachea    200.25 Larval Carcass    96.975 Adult Head    180.1 Adult Eye    528.825 Adult Brain    260.3 Adult Thoracic-Abdominal Ganglion    205.2 Adult Crop    157.6 Adult Midgut    115.2 Adult Hindgut    175.3 Adult Malpighian Tubules    113.9 Adult Fat Body    81.9 Adult Salivary Gland    293.4 Adult Heart    132.025 Adult VirginFemale Spermatheca    60.2 Adult InseminatedFemale Spermatheca    56.7 Adult Ovary    213.9 Adult Testis    483.2 Adult Male Accessory Gland    171.9 Adult Carcass    96.3 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    201.275 Larval Midgut    105.2 Larval Hindgut    156 Larval Malpighian Tubules    210.3 Larval Fat Body    176.9 Larval Salivary Gland    184.3 Larval Trachea    200.25 Larval Carcass    96.975 Adult Head    180.1 Adult Eye    528.825 Adult Brain    260.3 Adult Thoracic-Abdominal Ganglion    205.2 Adult Crop    157.6 Adult Midgut    115.2 Adult Hindgut    175.3 Adult Malpighian Tubules    113.9 Adult Fat Body    81.9 Adult Salivary Gland    293.4 Adult Heart    132.025 Adult VirginFemale Spermatheca    60.2 Adult InseminatedFemale Spermatheca    56.7 Adult Ovary    213.9 Adult Testis    483.2 Adult Male Accessory Gland    171.9 Adult Carcass    96.3 Expression Level Scale  None   Low   Moderate   High  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    201.275 Larval Midgut    105.2 Larval Hindgut    156 Larval Malpighian Tubules    210.3 Larval Fat Body    176.9 Larval Salivary Gland    184.3 Larval Trachea    200.25 Larval Carcass    96.975 Adult Head    180.1 Adult Eye  528.825 Adult Brain    260.3 Adult Thoracic-Abdominal Ganglion    205.2 Adult Crop    157.6 Adult Midgut    115.2 Adult Hindgut    175.3 Adult Malpighian Tubules    113.9 Adult Fat Body    81.9 Adult Salivary Gland    293.4 Adult Heart    132.025 Adult VirginFemale Spermatheca    60.2 Adult InseminatedFemale Spermatheca    56.7 Adult Ovary    213.9 Adult Testis    483.2 Adult Male Accessory Gland    171.9 Adult Carcass    96.3 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    201.275 Larval Midgut    105.2 Larval Hindgut    156 Larval Malpighian Tubules    210.3 Larval Fat Body    176.9 Larval Salivary Gland    184.3 Larval Trachea    200.25 Larval Carcass    96.975 Adult Head    180.1 Adult Eye    528.825 Adult Brain    260.3 Adult Thoracic-Abdominal Ganglion    205.2 Adult Crop    157.6 Adult Midgut    115.2 Adult Hindgut    175.3 Adult Malpighian Tubules    113.9 Adult Fat Body    81.9 Adult Salivary Gland    293.4 Adult Heart    132.025 Adult VirginFemale Spermatheca    60.2 Adult InseminatedFemale Spermatheca    56.7 Adult Ovary    213.9 Adult Testis    483.2 Adult Male Accessory Gland    171.9 Adult Carcass    96.3 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    201.275 Larval Midgut    105.2 Larval Hindgut    156 Larval Malpighian Tubules    210.3 Larval Fat Body    176.9 Larval Salivary Gland    184.3 Larval Trachea    200.25 Larval Carcass    96.975 Adult Head    180.1 Adult Eye    528.825 Adult Brain    260.3 Adult Thoracic-Abdominal Ganglion    205.2 Adult Crop    157.6 Adult Midgut    115.2 Adult Hindgut    175.3 Adult Malpighian Tubules    113.9 Adult Fat Body    81.9 Adult Salivary Gland    293.4 Adult Heart    132.025 Adult VirginFemale Spermatheca    60.2 Adult InseminatedFemale Spermatheca    56.7 Adult Ovary    213.9 Adult Testis    483.2 Adult Male Accessory Gland    171.9 Adult Carcass    96.3 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    180.1   NA  Eye    528.825   NA  Brain    260.3   201.275  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    205.2   NA  Crop    157.6   105.2  Midgut    115.2   156  Hindgut    175.3   210.3  Malpighian Tubules    113.9   176.9  Fat Body    81.9   184.3  Salivary Gland    293.4   NA  Heart    132.025   200.25  Trachea    NA   NA  VirginFemale Spermatheca    60.2   NA  InseminatedFemale Spermatheca    56.7   NA  Ovary    213.9   NA  Testis    483.2   NA  Male Accessory Gland    171.9   96.975  Carcass    96.3 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    52 central nervous system, larvae L3    26 central nervous system, pupae P8    29 head, virgin 1-day female    16 head, virgin 4-day female    20 head, virgin 20-day female    21 head, mated 1-day female    16 head, mated 4-day female    17 head, mated 20-day female    18 head, mated 1-day male    22 head, mated 4-day male    25 head, mated 20-day male    30 salivary gland, larvae L3 wandering    7 salivary gland, white prepupae    16 digestive system, larvae L3 wandering    25 digestive system, 1-day adult    16 digestive system, 4-day adult    14 digestive system, 20-day adult    12 fat body, larvae L3 wandering    9 fat body, white prepupae    18 fat body, pupae P8    47 carcass, larvae L3 wandering    22 carcass, 1-day adult    12 carcass, 4-day adult    10 carcass, 20-day adult    14 ovary, virgin 4-day female    51 ovary, mated 4-day female    39 testis, mated 4-day male    176 accessory gland, mated 4-day male    26 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (52) central nervous system, larvae L3  26 central nervous system, pupae P8  (29) head, virgin 1-day female    16 head, virgin 4-day female    20 head, virgin 20-day female    21 head, mated 1-day female    16 head, mated 4-day female    17 head, mated 20-day female    18 head, mated 1-day male    22 head, mated 4-day male    25 head, mated 20-day male  (30) salivary gland, larvae L3 wandering    7 salivary gland, white prepupae    16 digestive system, larvae L3 wandering    25 digestive system, 1-day adult    16 digestive system, 4-day adult    14 digestive system, 20-day adult    12 fat body, larvae L3 wandering    9 fat body, white prepupae    18 fat body, pupae P8  (47) carcass, larvae L3 wandering    22 carcass, 1-day adult    12 carcass, 4-day adult    10 carcass, 20-day adult    14 ovary, virgin 4-day female  (51) ovary, mated 4-day female  (39) testis, mated 4-day male  (176) accessory gland, mated 4-day male  26 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    52 central nervous system, larvae L3    26 central nervous system, pupae P8    29 head, virgin 1-day female    16 head, virgin 4-day female    20 head, virgin 20-day female    21 head, mated 1-day female    16 head, mated 4-day female    17 head, mated 20-day female    18 head, mated 1-day male    22 head, mated 4-day male    25 head, mated 20-day male    30 salivary gland, larvae L3 wandering    7 salivary gland, white prepupae    16 digestive system, larvae L3 wandering    25 digestive system, 1-day adult    16 digestive system, 4-day adult    14 digestive system, 20-day adult    12 fat body, larvae L3 wandering    9 fat body, white prepupae    18 fat body, pupae P8    47 carcass, larvae L3 wandering    22 carcass, 1-day adult    12 carcass, 4-day adult    10 carcass, 20-day adult    14 ovary, virgin 4-day female    51 ovary, mated 4-day female    39 testis, mated 4-day male  (176) accessory gland, mated 4-day male    26 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    52 central nervous system, larvae L3    26 central nervous system, pupae P8    29 head, virgin 1-day female    16 head, virgin 4-day female    20 head, virgin 20-day female    21 head, mated 1-day female    16 head, mated 4-day female    17 head, mated 20-day female    18 head, mated 1-day male    22 head, mated 4-day male    25 head, mated 20-day male    30 salivary gland, larvae L3 wandering    7 salivary gland, white prepupae    16 digestive system, larvae L3 wandering    25 digestive system, 1-day adult    16 digestive system, 4-day adult    14 digestive system, 20-day adult    12 fat body, larvae L3 wandering    9 fat body, white prepupae    18 fat body, pupae P8    47 carcass, larvae L3 wandering    22 carcass, 1-day adult    12 carcass, 4-day adult    10 carcass, 20-day adult    14 ovary, virgin 4-day female    51 ovary, mated 4-day female    39 testis, mated 4-day male    176 accessory gland, mated 4-day male    26 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    52 central nervous system, larvae L3    26 central nervous system, pupae P8    29 head, virgin 1-day female    16 head, virgin 4-day female    20 head, virgin 20-day female    21 head, mated 1-day female    16 head, mated 4-day female    17 head, mated 20-day female    18 head, mated 1-day male    22 head, mated 4-day male    25 head, mated 20-day male    30 salivary gland, larvae L3 wandering    7 salivary gland, white prepupae    16 digestive system, larvae L3 wandering    25 digestive system, 1-day adult    16 digestive system, 4-day adult    14 digestive system, 20-day adult    12 fat body, larvae L3 wandering    9 fat body, white prepupae    18 fat body, pupae P8    47 carcass, larvae L3 wandering    22 carcass, 1-day adult    12 carcass, 4-day adult    10 carcass, 20-day adult    14 ovary, virgin 4-day female    51 ovary, mated 4-day female    39 testis, mated 4-day male    176 accessory gland, mated 4-day male    26 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (52) central nervous system, larvae L3  26 central nervous system, pupae P8  29 head, virgin 1-day female    16 head, virgin 4-day female    20 head, virgin 20-day female    21 head, mated 1-day female    16 head, mated 4-day female    17 head, mated 20-day female    18 head, mated 1-day male    22 head, mated 4-day male    25 head, mated 20-day male  30 salivary gland, larvae L3 wandering    7 salivary gland, white prepupae    16 digestive system, larvae L3 wandering    25 digestive system, 1-day adult    16 digestive system, 4-day adult    14 digestive system, 20-day adult    12 fat body, larvae L3 wandering    9 fat body, white prepupae    18 fat body, pupae P8  (47) carcass, larvae L3 wandering    22 carcass, 1-day adult    12 carcass, 4-day adult    10 carcass, 20-day adult    14 ovary, virgin 4-day female  (51) ovary, mated 4-day female  (39) testis, mated 4-day male  (176) accessory gland, mated 4-day male  26 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    52 central nervous system, larvae L3    26 central nervous system, pupae P8    29 head, virgin 1-day female    16 head, virgin 4-day female    20 head, virgin 20-day female    21 head, mated 1-day female    16 head, mated 4-day female    17 head, mated 20-day female    18 head, mated 1-day male    22 head, mated 4-day male    25 head, mated 20-day male    30 salivary gland, larvae L3 wandering    7 salivary gland, white prepupae    16 digestive system, larvae L3 wandering    25 digestive system, 1-day adult    16 digestive system, 4-day adult    14 digestive system, 20-day adult    12 fat body, larvae L3 wandering    9 fat body, white prepupae    18 fat body, pupae P8    47 carcass, larvae L3 wandering    22 carcass, 1-day adult    12 carcass, 4-day adult    10 carcass, 20-day adult    14 ovary, virgin 4-day female    51 ovary, mated 4-day female    39 testis, mated 4-day male  (176) accessory gland, mated 4-day male    26 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    52 central nervous system, larvae L3    26 central nervous system, pupae P8    29 head, virgin 1-day female    16 head, virgin 4-day female    20 head, virgin 20-day female    21 head, mated 1-day female    16 head, mated 4-day female    17 head, mated 20-day female    18 head, mated 1-day male    22 head, mated 4-day male    25 head, mated 20-day male    30 salivary gland, larvae L3 wandering    7 salivary gland, white prepupae    16 digestive system, larvae L3 wandering    25 digestive system, 1-day adult    16 digestive system, 4-day adult    14 digestive system, 20-day adult    12 fat body, larvae L3 wandering    9 fat body, white prepupae    18 fat body, pupae P8    47 carcass, larvae L3 wandering    22 carcass, 1-day adult    12 carcass, 4-day adult    10 carcass, 20-day adult    14 ovary, virgin 4-day female    51 ovary, mated 4-day female    39 testis, mated 4-day male    176 accessory gland, mated 4-day male    26 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages, during late larval stages, at stages throughout the pupal period, in stages of adults of both sexes. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    42 embryo 02-04hr    15 embryo 04-06hr    11 embryo 06-08hr    16 embryo 08-10hr    20 embryo 10-12hr    24 embryo 12-14hr    18 embryo 14-16hr    11 embryo 16-18hr    10 embryo 18-20hr    8 embryo 20-22hr    6 embryo 22-24hr    8 larva L1    10 larva L2    13 larva L3 12hr old    11 larva L3 puffstage 1-2    21 larva L3 puffstage 3-6    24 larva L3 puffstage 7-9    33 white prepupae new    29 white prepupae 12hr    34 white prepupae 24hr    42 pupae 2d postWPP    39 pupae 3d postWPP    30 pupae 4d postWPP    22 adult male 01day    30 adult male 05day    34 adult male 30day    30 adult female 01day    19 adult female 05day    34 adult female 30day    33 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (42) embryo 02-04hr    15 embryo 04-06hr    11 embryo 06-08hr    16 embryo 08-10hr    20 embryo 10-12hr    24 embryo 12-14hr    18 embryo 14-16hr    11 embryo 16-18hr    10 embryo 18-20hr    8 embryo 20-22hr    6 embryo 22-24hr    8 larva L1    10 larva L2    13 larva L3 12hr old    11 larva L3 puffstage 1-2    21 larva L3 puffstage 3-6    24 larva L3 puffstage 7-9  (33) white prepupae new  (29) white prepupae 12hr  (34) white prepupae 24hr  (42) pupae 2d postWPP  (39) pupae 3d postWPP  (30) pupae 4d postWPP    22 adult male 01day  (30) adult male 05day  (34) adult male 30day  (30) adult female 01day    19 adult female 05day  (34) adult female 30day  (33) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    42 embryo 02-04hr    15 embryo 04-06hr    11 embryo 06-08hr    16 embryo 08-10hr    20 embryo 10-12hr    24 embryo 12-14hr    18 embryo 14-16hr    11 embryo 16-18hr    10 embryo 18-20hr    8 embryo 20-22hr    6 embryo 22-24hr    8 larva L1    10 larva L2    13 larva L3 12hr old    11 larva L3 puffstage 1-2    21 larva L3 puffstage 3-6    24 larva L3 puffstage 7-9    33 white prepupae new    29 white prepupae 12hr    34 white prepupae 24hr    42 pupae 2d postWPP    39 pupae 3d postWPP    30 pupae 4d postWPP    22 adult male 01day    30 adult male 05day    34 adult male 30day    30 adult female 01day    19 adult female 05day    34 adult female 30day    33 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    42 embryo 02-04hr    15 embryo 04-06hr    11 embryo 06-08hr    16 embryo 08-10hr    20 embryo 10-12hr    24 embryo 12-14hr    18 embryo 14-16hr    11 embryo 16-18hr    10 embryo 18-20hr    8 embryo 20-22hr    6 embryo 22-24hr    8 larva L1    10 larva L2    13 larva L3 12hr old    11 larva L3 puffstage 1-2    21 larva L3 puffstage 3-6    24 larva L3 puffstage 7-9    33 white prepupae new    29 white prepupae 12hr    34 white prepupae 24hr    42 pupae 2d postWPP    39 pupae 3d postWPP    30 pupae 4d postWPP    22 adult male 01day    30 adult male 05day    34 adult male 30day    30 adult female 01day    19 adult female 05day    34 adult female 30day    33 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    42 embryo 02-04hr    15 embryo 04-06hr    11 embryo 06-08hr    16 embryo 08-10hr    20 embryo 10-12hr    24 embryo 12-14hr    18 embryo 14-16hr    11 embryo 16-18hr    10 embryo 18-20hr    8 embryo 20-22hr    6 embryo 22-24hr    8 larva L1    10 larva L2    13 larva L3 12hr old    11 larva L3 puffstage 1-2    21 larva L3 puffstage 3-6    24 larva L3 puffstage 7-9    33 white prepupae new    29 white prepupae 12hr    34 white prepupae 24hr    42 pupae 2d postWPP    39 pupae 3d postWPP    30 pupae 4d postWPP    22 adult male 01day    30 adult male 05day    34 adult male 30day    30 adult female 01day    19 adult female 05day    34 adult female 30day    33 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (42) embryo 02-04hr    15 embryo 04-06hr    11 embryo 06-08hr    16 embryo 08-10hr    20 embryo 10-12hr    24 embryo 12-14hr    18 embryo 14-16hr    11 embryo 16-18hr    10 embryo 18-20hr    8 embryo 20-22hr    6 embryo 22-24hr    8 larva L1    10 larva L2    13 larva L3 12hr old    11 larva L3 puffstage 1-2    21 larva L3 puffstage 3-6    24 larva L3 puffstage 7-9  (33) white prepupae new  29 white prepupae 12hr  (34) white prepupae 24hr  (42) pupae 2d postWPP  (39) pupae 3d postWPP  30 pupae 4d postWPP    22 adult male 01day  30 adult male 05day  (34) adult male 30day  30 adult female 01day    19 adult female 05day  (34) adult female 30day  (33) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    42 embryo 02-04hr    15 embryo 04-06hr    11 embryo 06-08hr    16 embryo 08-10hr    20 embryo 10-12hr    24 embryo 12-14hr    18 embryo 14-16hr    11 embryo 16-18hr    10 embryo 18-20hr    8 embryo 20-22hr    6 embryo 22-24hr    8 larva L1    10 larva L2    13 larva L3 12hr old    11 larva L3 puffstage 1-2    21 larva L3 puffstage 3-6    24 larva L3 puffstage 7-9    33 white prepupae new    29 white prepupae 12hr    34 white prepupae 24hr    42 pupae 2d postWPP    39 pupae 3d postWPP    30 pupae 4d postWPP    22 adult male 01day    30 adult male 05day    34 adult male 30day    30 adult female 01day    19 adult female 05day    34 adult female 30day    33 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    42 embryo 02-04hr    15 embryo 04-06hr    11 embryo 06-08hr    16 embryo 08-10hr    20 embryo 10-12hr    24 embryo 12-14hr    18 embryo 14-16hr    11 embryo 16-18hr    10 embryo 18-20hr    8 embryo 20-22hr    6 embryo 22-24hr    8 larva L1    10 larva L2    13 larva L3 12hr old    11 larva L3 puffstage 1-2    21 larva L3 puffstage 3-6    24 larva L3 puffstage 7-9    33 white prepupae new    29 white prepupae 12hr    34 white prepupae 24hr    42 pupae 2d postWPP    39 pupae 3d postWPP    30 pupae 4d postWPP    22 adult male 01day    30 adult male 05day    34 adult male 30day    30 adult female 01day    19 adult female 05day    34 adult female 30day    33 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    50 Schneider line 2 Sg4    43 embryonic 1182-4H    48 embryonic GM2    31 embryonic Kc167    50 embryonic S1    48 embryonic S3    26 leg disc CME L1    34 wing disc CME-W2    39 wing disc ML-DmD8    41 wing disc ML-DmD9    44 wing disc ML-DmD16-c3    26 wing disc ML-DmD21    54 wing disc ML-DmD32    43 haltere disc ML-DmD17-c3    26 eye-antennal disc ML-DmD11    42 antennal disc ML-DmD20-c5    28 mixed discs ML-DmD4-c1    42 CNS ML-DmBG1-c1    23 CNS ML-DmBG2-c2    42 tumorous blood cells mbn2    19 ovary fGS/OSS    23 ovary OSC    50 ovary OSS    35 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (50) Schneider line 2 Sg4  (43) embryonic 1182-4H  (48) embryonic GM2  (31) embryonic Kc167  (50) embryonic S1  (48) embryonic S3  26 leg disc CME L1  (34) wing disc CME-W2  (39) wing disc ML-DmD8  (41) wing disc ML-DmD9  (44) wing disc ML-DmD16-c3  26 wing disc ML-DmD21  (54) wing disc ML-DmD32  (43) haltere disc ML-DmD17-c3  26 eye-antennal disc ML-DmD11  (42) antennal disc ML-DmD20-c5  (28) mixed discs ML-DmD4-c1  (42) CNS ML-DmBG1-c1    23 CNS ML-DmBG2-c2  (42) tumorous blood cells mbn2    19 ovary fGS/OSS    23 ovary OSC  (50) ovary OSS  (35) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    50 Schneider line 2 Sg4    43 embryonic 1182-4H    48 embryonic GM2    31 embryonic Kc167    50 embryonic S1    48 embryonic S3    26 leg disc CME L1    34 wing disc CME-W2    39 wing disc ML-DmD8    41 wing disc ML-DmD9    44 wing disc ML-DmD16-c3    26 wing disc ML-DmD21    54 wing disc ML-DmD32    43 haltere disc ML-DmD17-c3    26 eye-antennal disc ML-DmD11    42 antennal disc ML-DmD20-c5    28 mixed discs ML-DmD4-c1    42 CNS ML-DmBG1-c1    23 CNS ML-DmBG2-c2    42 tumorous blood cells mbn2    19 ovary fGS/OSS    23 ovary OSC    50 ovary OSS    35 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    50 Schneider line 2 Sg4    43 embryonic 1182-4H    48 embryonic GM2    31 embryonic Kc167    50 embryonic S1    48 embryonic S3    26 leg disc CME L1    34 wing disc CME-W2    39 wing disc ML-DmD8    41 wing disc ML-DmD9    44 wing disc ML-DmD16-c3    26 wing disc ML-DmD21    54 wing disc ML-DmD32    43 haltere disc ML-DmD17-c3    26 eye-antennal disc ML-DmD11    42 antennal disc ML-DmD20-c5    28 mixed discs ML-DmD4-c1    42 CNS ML-DmBG1-c1    23 CNS ML-DmBG2-c2    42 tumorous blood cells mbn2    19 ovary fGS/OSS    23 ovary OSC    50 ovary OSS    35 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    50 Schneider line 2 Sg4    43 embryonic 1182-4H    48 embryonic GM2    31 embryonic Kc167    50 embryonic S1    48 embryonic S3    26 leg disc CME L1    34 wing disc CME-W2    39 wing disc ML-DmD8    41 wing disc ML-DmD9    44 wing disc ML-DmD16-c3    26 wing disc ML-DmD21    54 wing disc ML-DmD32    43 haltere disc ML-DmD17-c3    26 eye-antennal disc ML-DmD11    42 antennal disc ML-DmD20-c5    28 mixed discs ML-DmD4-c1    42 CNS ML-DmBG1-c1    23 CNS ML-DmBG2-c2    42 tumorous blood cells mbn2    19 ovary fGS/OSS    23 ovary OSC    50 ovary OSS    35 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (50) Schneider line 2 Sg4  (43) embryonic 1182-4H  (48) embryonic GM2  31 embryonic Kc167  (50) embryonic S1  (48) embryonic S3  26 leg disc CME L1  (34) wing disc CME-W2  (39) wing disc ML-DmD8  (41) wing disc ML-DmD9  (44) wing disc ML-DmD16-c3  26 wing disc ML-DmD21  (54) wing disc ML-DmD32  (43) haltere disc ML-DmD17-c3  26 eye-antennal disc ML-DmD11  (42) antennal disc ML-DmD20-c5  28 mixed discs ML-DmD4-c1  (42) CNS ML-DmBG1-c1    23 CNS ML-DmBG2-c2  (42) tumorous blood cells mbn2    19 ovary fGS/OSS    23 ovary OSC  (50) ovary OSS  (35) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    50 Schneider line 2 Sg4    43 embryonic 1182-4H    48 embryonic GM2    31 embryonic Kc167    50 embryonic S1    48 embryonic S3    26 leg disc CME L1    34 wing disc CME-W2    39 wing disc ML-DmD8    41 wing disc ML-DmD9    44 wing disc ML-DmD16-c3    26 wing disc ML-DmD21    54 wing disc ML-DmD32    43 haltere disc ML-DmD17-c3    26 eye-antennal disc ML-DmD11    42 antennal disc ML-DmD20-c5    28 mixed discs ML-DmD4-c1    42 CNS ML-DmBG1-c1    23 CNS ML-DmBG2-c2    42 tumorous blood cells mbn2    19 ovary fGS/OSS    23 ovary OSC    50 ovary OSS    35 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    50 Schneider line 2 Sg4    43 embryonic 1182-4H    48 embryonic GM2    31 embryonic Kc167    50 embryonic S1    48 embryonic S3    26 leg disc CME L1    34 wing disc CME-W2    39 wing disc ML-DmD8    41 wing disc ML-DmD9    44 wing disc ML-DmD16-c3    26 wing disc ML-DmD21    54 wing disc ML-DmD32    43 haltere disc ML-DmD17-c3    26 eye-antennal disc ML-DmD11    42 antennal disc ML-DmD20-c5    28 mixed discs ML-DmD4-c1    42 CNS ML-DmBG1-c1    23 CNS ML-DmBG2-c2    42 tumorous blood cells mbn2    19 ovary fGS/OSS    23 ovary OSC    50 ovary OSS    35 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    11 heat shock, 4-day adult    21 Cadmium 50 mM 6 hrs, larvae L3    16 Cadmium 50 mM 12 hrs, larvae L3    27 Cadmium 50 mM 48 hrs, 4-day adult    23 Cadmium 100 mM 48 hrs, 4-day adult    32 Copper 0.5 mM 12 hrs, larvae L3    19 Copper 15 mM 48 hrs, 4-day adult    23 Zinc 5 mM 12 hrs, larvae L3    10 Zinc 4.5 mM 48 hrs, 4-day adult    21 Ethanol 2.5% 3 hrs, larvae L3    30 Ethanol 5% 3 hrs, larvae L3    16 Ethanol 10% 3 hrs, larvae L3    13 Caffeine 1.5 mg/ml 4 hrs, larvae L3    18 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    34 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    37 Paraquat 10 mM 48 hrs, 4-day adult    34 Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    18 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    11 heat shock, 4-day adult    21 Cadmium 50 mM 6 hrs, larvae L3    16 Cadmium 50 mM 12 hrs, larvae L3  (27) Cadmium 50 mM 48 hrs, 4-day adult    23 Cadmium 100 mM 48 hrs, 4-day adult  (32) Copper 0.5 mM 12 hrs, larvae L3    19 Copper 15 mM 48 hrs, 4-day adult    23 Zinc 5 mM 12 hrs, larvae L3    10 Zinc 4.5 mM 48 hrs, 4-day adult    21 Ethanol 2.5% 3 hrs, larvae L3  (30) Ethanol 5% 3 hrs, larvae L3    16 Ethanol 10% 3 hrs, larvae L3    13 Caffeine 1.5 mg/ml 4 hrs, larvae L3    18 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (34) Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult  (37) Paraquat 10 mM 48 hrs, 4-day adult  (34) Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    18 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    11 heat shock, 4-day adult    21 Cadmium 50 mM 6 hrs, larvae L3    16 Cadmium 50 mM 12 hrs, larvae L3    27 Cadmium 50 mM 48 hrs, 4-day adult    23 Cadmium 100 mM 48 hrs, 4-day adult    32 Copper 0.5 mM 12 hrs, larvae L3    19 Copper 15 mM 48 hrs, 4-day adult    23 Zinc 5 mM 12 hrs, larvae L3    10 Zinc 4.5 mM 48 hrs, 4-day adult    21 Ethanol 2.5% 3 hrs, larvae L3    30 Ethanol 5% 3 hrs, larvae L3    16 Ethanol 10% 3 hrs, larvae L3    13 Caffeine 1.5 mg/ml 4 hrs, larvae L3    18 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    34 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    37 Paraquat 10 mM 48 hrs, 4-day adult    34 Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    11 heat shock, 4-day adult    21 Cadmium 50 mM 6 hrs, larvae L3    16 Cadmium 50 mM 12 hrs, larvae L3    27 Cadmium 50 mM 48 hrs, 4-day adult    23 Cadmium 100 mM 48 hrs, 4-day adult    32 Copper 0.5 mM 12 hrs, larvae L3    19 Copper 15 mM 48 hrs, 4-day adult    23 Zinc 5 mM 12 hrs, larvae L3    10 Zinc 4.5 mM 48 hrs, 4-day adult    21 Ethanol 2.5% 3 hrs, larvae L3    30 Ethanol 5% 3 hrs, larvae L3    16 Ethanol 10% 3 hrs, larvae L3    13 Caffeine 1.5 mg/ml 4 hrs, larvae L3    18 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    34 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    37 Paraquat 10 mM 48 hrs, 4-day adult    34 Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    18 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    11 heat shock, 4-day adult    21 Cadmium 50 mM 6 hrs, larvae L3    16 Cadmium 50 mM 12 hrs, larvae L3    27 Cadmium 50 mM 48 hrs, 4-day adult    23 Cadmium 100 mM 48 hrs, 4-day adult    32 Copper 0.5 mM 12 hrs, larvae L3    19 Copper 15 mM 48 hrs, 4-day adult    23 Zinc 5 mM 12 hrs, larvae L3    10 Zinc 4.5 mM 48 hrs, 4-day adult    21 Ethanol 2.5% 3 hrs, larvae L3    30 Ethanol 5% 3 hrs, larvae L3    16 Ethanol 10% 3 hrs, larvae L3    13 Caffeine 1.5 mg/ml 4 hrs, larvae L3    18 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    34 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    37 Paraquat 10 mM 48 hrs, 4-day adult    34 Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    11 heat shock, 4-day adult    21 Cadmium 50 mM 6 hrs, larvae L3    16 Cadmium 50 mM 12 hrs, larvae L3  27 Cadmium 50 mM 48 hrs, 4-day adult    23 Cadmium 100 mM 48 hrs, 4-day adult  32 Copper 0.5 mM 12 hrs, larvae L3    19 Copper 15 mM 48 hrs, 4-day adult    23 Zinc 5 mM 12 hrs, larvae L3    10 Zinc 4.5 mM 48 hrs, 4-day adult    21 Ethanol 2.5% 3 hrs, larvae L3  30 Ethanol 5% 3 hrs, larvae L3    16 Ethanol 10% 3 hrs, larvae L3    13 Caffeine 1.5 mg/ml 4 hrs, larvae L3    18 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (34) Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult  (37) Paraquat 10 mM 48 hrs, 4-day adult  (34) Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    18 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    11 heat shock, 4-day adult    21 Cadmium 50 mM 6 hrs, larvae L3    16 Cadmium 50 mM 12 hrs, larvae L3    27 Cadmium 50 mM 48 hrs, 4-day adult    23 Cadmium 100 mM 48 hrs, 4-day adult    32 Copper 0.5 mM 12 hrs, larvae L3    19 Copper 15 mM 48 hrs, 4-day adult    23 Zinc 5 mM 12 hrs, larvae L3    10 Zinc 4.5 mM 48 hrs, 4-day adult    21 Ethanol 2.5% 3 hrs, larvae L3    30 Ethanol 5% 3 hrs, larvae L3    16 Ethanol 10% 3 hrs, larvae L3    13 Caffeine 1.5 mg/ml 4 hrs, larvae L3    18 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    34 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    37 Paraquat 10 mM 48 hrs, 4-day adult    34 Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    11 heat shock, 4-day adult    21 Cadmium 50 mM 6 hrs, larvae L3    16 Cadmium 50 mM 12 hrs, larvae L3    27 Cadmium 50 mM 48 hrs, 4-day adult    23 Cadmium 100 mM 48 hrs, 4-day adult    32 Copper 0.5 mM 12 hrs, larvae L3    19 Copper 15 mM 48 hrs, 4-day adult    23 Zinc 5 mM 12 hrs, larvae L3    10 Zinc 4.5 mM 48 hrs, 4-day adult    21 Ethanol 2.5% 3 hrs, larvae L3    30 Ethanol 5% 3 hrs, larvae L3    16 Ethanol 10% 3 hrs, larvae L3    13 Caffeine 1.5 mg/ml 4 hrs, larvae L3    18 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    34 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    37 Paraquat 10 mM 48 hrs, 4-day adult    34 Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_21 mE1_20_mRNA_expression_cluster_09
External Data & Images
Linkouts	BDGP expression data • RE69619 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0016038 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG17828-RB
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 mod(r)GD8613 Phenotype manifest in Allele wing mod(r)p1
Classical Alleles ( 5 )
For All Classical Alleles Show
Allele of mod(r) Class Mutagen Stocks Known lesion mod(r)KG07005 P-element activity 1 Yes mod(r)CB-0688-3 0 Yes mod(r)GG01672 0 -- mod(r)p1 hypomorphic allele - genetic evidence PM hybrid dysgenesis 0 Yes mod(r)p2 PM hybrid dysgenesis 0 Yes
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of mod(r) Class Mutagen Stocks Known lesion mod(r)GD8613 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes mod(r)HMS01766 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes mod(r)KK109860 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD8613} NA P{KK109860} NA P{TRiP.HMS01766} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions P{}mod(r)p1 NA P{}mod(r)p2 NA P{RS3}mod(r)CB-0688-3 NA P{SUPor-P}mod(r)KG07005 NA insertion of mobile activating element P{Mae-UAS.6.11}mod(r)GG01672 NA
Gene Ontology: Function, Process & Cellular Component ( 1 unique term )
	There is no information supporting a molecular function term for this gene. (Based on a review of available data on: 2012-06-13)
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 1 term )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway inferred from sequence or structural similarity with Saccharomyces SRN2 (Curators, 2008--)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
mod(r) - ATPsyn-γ anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mod(r) - Arpc1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mod(r) - Bet3 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mod(r) - CG11266 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mod(r) - CG15220 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mod(r) - CG17454 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mod(r) - CG17765 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mod(r) - CG32368 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mod(r) - CG3689 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mod(r) - CG3817 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mod(r) - CG6724 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mod(r) - CG7878 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mod(r) - Chd64 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mod(r) - Dgp-1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mod(r) - Elongin-B anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mod(r) - NHP2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mod(r) - Rpb8 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mod(r) - Saf-B anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mod(r) - SmD3 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mod(r) - SmG anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mod(r) - TSG101 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mod(r) - Vps28 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mod(r) - bor anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mod(r) - cathD anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mod(r) - mRpL39 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mod(r) - sqh anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mod(r) - tyf anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mod(r) - wds anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions mod(r) allele Gene References mod(r)p1 r (Begley et al., 1995)
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 57575 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0016038 DroID - A comprehensive database of gene and protein interactions. • FBgn0016038 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 31006
Orthologs
OrthoDB Orthologs (47) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6R50P8 Dipteran inclusive ortholog search EOG64TPHT Insect inclusive ortholog search EOG61RNQF Arthropod inclusive ortholog search EOG6B5MMM Metazoa inclusive ortholog search EOG6DG2GJ
Orthologs in Drosophila Species (EOG6R50P8)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\mod(r)     Drosophila simulans   Dsim\GD16515 Y   Drosophila sechellia   Dsec\GM19076 Y   Drosophila erecta   Dere\GG12797 Y   Drosophila yakuba   Dyak\GE16623 Y   Drosophila ananassae   Dana\GF22102 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA14686 Y   Drosophila persimilis   Dper\GL21382 Y   Drosophila willistoni   Dwil\GK16437 Y   Drosophila virilis   Dvir\GJ19471 Y   Drosophila mojavensis   Dmoj\GI14804 Y   Drosophila grimshawi   Dgri\GH24324 Y
Orthologs in non-Drosophila Dipterans (EOG64TPHT)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL006923   Anopheles gambiae Malaria mosquito  Agam\AGAP002538   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ009599
Orthologs in non-Dipteran Insects (EOG61RNQF)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\mod(r)   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG006997   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH19090   Atta cephalotes Leafcutter ant  Acep\ACEP19692   Camponotus floridanus Florida carpenter ant  Cflo\CFLO13294   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL19725   Linepithema humile Argentine ant  Lhum\LH24444   Pogonomyrmex barbatus Red harvester ant  Pbar\PB24985   Solenopsis invicta Red fire ant  Sinv\SINV22644   Acyrthosiphon pisum Pea aphid  Apim\ACYPI009527   Bombyx mori Silkmoth  Bmor\BGIBMGA011388   Pediculus humanus Human body louse  Phum\PHUM327990   Tribolium castaneum Red flour beetle  Tcas\TC013872
Orthologs in non-Insect Arthropods (EOG6B5MMM)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Ixodes scapularis Deer tick  Isca\ISCW016787
Orthologs in non-Arthropod Metazoa (EOG6DG2GJ)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_000313gn   Danio rerio Zebrafish  Drer\vps37a   Danio rerio Zebrafish  Drer\DKEY-9I23.17   Danio rerio Zebrafish  Drer\si:dkey-21k4.4   Xenopus tropicalis Western clawed frog  Xtro\vps37b   Xenopus tropicalis Western clawed frog  Xtro\vps37a   Gallus gallus Domestic chicken  Ggal\VPS37C   Gallus gallus Domestic chicken  Ggal\VPS37A   Gallus gallus Domestic chicken  Ggal\VPS37B   Mus musculus House mouse  Mmus\Vps37c   Mus musculus House mouse  Mmus\Vps37b   Mus musculus House mouse  Mmus\Vps37a   Rattus norvegicus Norway rat  Rnor\Vps37a   Rattus norvegicus Norway rat  Rnor\Vps37c   Rattus norvegicus Norway rat  Rnor\Vps37b   Homo sapiens Human  Hsap\VPS37B   Homo sapiens Human  Hsap\VPS37A   Homo sapiens Human  Hsap\VPS37C
Human Orthologs (3)
Gene OMIM HGNC Hsap\VPS37B     Hsap\VPS37A     Hsap\VPS37C
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD16515 Drosophila sechellia Dsec\GM19076 Drosophila erecta Dere\GG12797 Drosophila yakuba Dyak\GE16623 Drosophila ananassae Dana\GF22102 Drosophila pseudoobscura pseudoobscura Dpse\GA14686 Drosophila persimilis Dper\GL21382 Drosophila willistoni Dwil\GK16437 Drosophila virilis Dvir\GJ19471 Drosophila mojavensis Dmoj\GI14804 Drosophila grimshawi Dgri\GH24324
Stocks & Reagents
Stocks Listed in FlyBase ( 5 )
Bloomington	14611 y1 P{SUPor-P}mod(r)KG07005/FM7c 38304 y1 sc* v1; P{TRiP.HMS01766}attP40
VDRC	v104530 P{KK109860}VIE-260B v39885 w1118; P{GD8613}v39885/TM3 v39887 w1118; P{GD8613}v39887/TM3
Genomic Clones ( 1 )
	BACR16G06 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 45 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	AT10251 RE69619
Other clones	DPiM_RE69619
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT03092 AT04392 GH04984 GH09863 GH28632 LP01383 SD11576 SD12213
Other clones	10620 71964 177201 CK01.68C.D1 CK01.110C.H9 CK00438 CK02153 EK044807 EK054913 EK102723 EK110332 EK113609 EK200256 EK236704 EK247306 EK282237 RP004113572 RP004228935 RP004237698 RP004238862 RP004258638 RP004281453 RP004283186 RP004388587 RP004413720 RP004437768 RP004455627 RP004461748 RP004485234 RP004493396 RP004528404 RP004538947 RP004543334 RP004544942
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0016038 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 31006
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: mod(r) anon-WO0153538.78 (FlyBase, 1996-) Source for merge of: mod(r) EG:115C2.5 (Gatt, 2000.1.20, FlyBase, 1996-)
Additional comments	Source for merge of mod(r) anon-WO0153538.78 was sequence comparison (date:051113). (FlyBase, 1996-) Source for merge of mod(r) EG:115C2.5 was sequence comparison (date:000120). (FlyBase, 1996-)
Other Comments
	mod(r) mutants have opposite effects on two r mutant phenotypes, that affecting the wing and that affecting fertility. The structure of the encoded protein reveals similarities to known transcription factors and mod(r) acts through the 5' control region of r to control its expression. (Begley et al., 1995)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_080295 NM_166848 NM_166849 NM_166850 NM_001272171 NM_001272172 RefSeq (Proteins) • NP_525034 NP_726679 NP_726680 NP_726681 NP_001259100 NP_001259101 DDBJ / EMBL / GenBank • AA141634 AAF45525 AAF45526 AAL48066 AAN09016 AAN09017 AGB94946 AGB94947 AI258241 AJ271295 AL031581 AX201694 AY070595 BH900899 BI486221 CAA20890 CAB76375 Entrez Gene - A searchable database of RefSeq genes. • 31006 UniProtKB/TrEMBL • O77259 Q7YZA5 Q9N6W9
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Modifier of rudimentary, Modr (IPR009851) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • RE69619
Linkouts
	BioGRID - A database of protein and genetic interactions • 57575 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0016038 DroID - A comprehensive database of gene and protein interactions. • FBgn0016038 DRSC - Results from RNAi screens. • FBgn0016038 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0016038 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG17828-RB FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0016038 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 31006 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 31006 modMine - Data generated by the modENCODE project. • FBgn0016038
Synonyms & Secondary IDs ( 6 )
Reported As
Symbol Synonym	anon-WO0153538.78   CG17828 (Benos, 2000.12.13, Vaccari et al., 2009, Keleman et al., 2009.8.5, Ni et al., 2010.12.1) EG:115C2.5 (Benos et al., 2001, Benos, 2000.12.13, Gatt, 2000.1.20, ) mod(r) (Lam and Tsubota, 2004, Vaccari et al., 2009) vps37A (Vaccari et al., 2009)
Name Synonym	modifier of rudimentary (Begley et al., 1995, Lam and Tsubota, 2004)
Secondary FlyBase IDs
	FBgn0025636 FBgn0045872
References ( 26 )
Generate a list of	All references relating to this gene ( 26 )
List References by type	Research paper  ( 6 ) Supplementary material  ( 4 ) Personal communication to FlyBase  ( 8 ) FlyBase analysis  ( 6 ) Website  ( 1 ) Patent  ( 1 )
Recent research papers (0)
	All research papers listed in FlyBase were published before 2011 Show research papers ...