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Gene Dmel\side

General Information
Symbol	Dmel\side	Species	D. melanogaster
Name	sidestep	Annotation symbol	CG31062
Feature type	protein_coding_gene	FlyBase ID	FBgn0016061
Gene Model Status	Current	Stock availability	12 publicly available
Genomic Location
Chromosome (arm)	3R	Recombination map	3-
Cytogenetic map	97F6-98A1	Sequence location	3R:23,200,810..23,263,204 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene sidestep is referred to in FlyBase by the symbol Dmel\side (CG31062, FBgn0016061). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process: motor neuron axon guidance. 17 alleles are reported. The phenotypes of these alleles are annotated with: organ system; ISN innervated muscle of A1-7; hypodermal muscle of larval abdomen; larval abdominal segment; embryonic/larval neuron; organ system subdivision; peripheral nervous system; A1-7 ventral longitudinal muscle 3; A2-7 dorsal oblique muscle 2; A1-7 dorsal acute muscle 2. It has 4 annotated transcripts and 4 annotated polypeptides. Protein features are: CD80-like, immunoglobulin C2-set; Fibronectin, type III; Immunoglobulin V-set; Immunoglobulin subtype; Immunoglobulin subtype 2; Immunoglobulin-like domain; Immunoglobulin-like fold. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of extremely low expression. Peak expression observed within 12-24 hour embryonic stages, during late pupal stages. Summary of FlyAtlas Anatomical Expression Data: Little or no expression detected in any larval or adult organs/tissues. Comments on Affy2 ProbeSet: ProbeSet 1623547_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of side. Gene sequence location is 3R:23200810..23263204.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 97F6-98A1   Limits computationally determined from genome sequence between P{PZ}sda03884 and P{PZ}btzrL203
Experimentally Determined Cytological Location
Cytogenetic map Notes References 98A1-98A2     (Sink, 2001.3.8)
Experimentally Determined Recombination Data
Location	3- (Sink and Goodman, 1996)
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\side for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.40 Gene model reviewed during 5.49 Low-frequency RNA-Seq exon junction(s) not annotated. Annotated transcripts do not represent all possible combinations of alternative exons and/or alternative promoters.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) side-RA FBtr0085168  NM_079806   5651   939 side-RB FBtr0289998  NM_001144645   11301   929 side-RC FBtr0309179  NM_001260405   5059   986 side-RD FBtr0309180  NM_001260406   6074   943
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein side-PA   FBpp0084538   101.7   939   5.71     NP_524530   AAF56708 side-PB   FBpp0288437   100.5   929   6.26     NP_001138117   ACL83573 side-PC   FBpp0301133   106.6   986   5.71     NP_001247334   AFH06651 side-PD   FBpp0301134   102.1   943   5.71     NP_001247335   AFH06652
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Immunoglobulin subtype 2 (IPR003598) Immunoglobulin subtype (IPR003599) Fibronectin, type III (IPR003961) Immunoglobulin-like domain (IPR007110) CD80-like, immunoglobulin C2-set (IPR013162) Immunoglobulin-like fold (IPR013783) Immunoglobulin V-set (IPR013106)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014297 AAF56708   AE014297 ACL83573   AF358267 AAK40237   AE014297 AFH06651   AE014297 AFH06652   AI532559   AI533714   BG639664   BT125645   BT128704   CO295192   CO298450   CO298494   CO340923   EC087078   EC202675
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VB35 B7Z0R1 Q967X6
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Little or no expression detected in any larval or adult organs/tissues. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    10.625 Larval Midgut    6.4 Larval Hindgut    6.3 Larval Malpighian Tubules    5.8 Larval Fat Body    8 Larval Salivary Gland    12 Larval Trachea    2.8 Larval Carcass    2.125 Adult Head    9.5 Adult Eye    5.3 Adult Brain    26.4 Adult Thoracic-Abdominal Ganglion    25.4 Adult Crop    7.1 Adult Midgut    8.7 Adult Hindgut    4.4 Adult Malpighian Tubules    3.4 Adult Fat Body    7.4 Adult Salivary Gland    9.3 Adult Heart    12.775 Adult VirginFemale Spermatheca    5 Adult InseminatedFemale Spermatheca    3.3 Adult Ovary    4.7 Adult Testis    4.6 Adult Male Accessory Gland    17.1 Adult Carcass    7.7 Expression Level Scale  None   Low  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    10.625 Larval Midgut    6.4 Larval Hindgut    6.3 Larval Malpighian Tubules    5.8 Larval Fat Body    8 Larval Salivary Gland    12 Larval Trachea    2.8 Larval Carcass    2.125 Adult Head    9.5 Adult Eye    5.3 Adult Brain    26.4 Adult Thoracic-Abdominal Ganglion    25.4 Adult Crop    7.1 Adult Midgut    8.7 Adult Hindgut    4.4 Adult Malpighian Tubules    3.4 Adult Fat Body    7.4 Adult Salivary Gland    9.3 Adult Heart    12.775 Adult VirginFemale Spermatheca    5 Adult InseminatedFemale Spermatheca    3.3 Adult Ovary    4.7 Adult Testis    4.6 Adult Male Accessory Gland    17.1 Adult Carcass    7.7 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    10.625 Larval Midgut    6.4 Larval Hindgut    6.3 Larval Malpighian Tubules    5.8 Larval Fat Body    8 Larval Salivary Gland    12 Larval Trachea    2.8 Larval Carcass    2.125 Adult Head    9.5 Adult Eye    5.3 Adult Brain    26.4 Adult Thoracic-Abdominal Ganglion    25.4 Adult Crop    7.1 Adult Midgut    8.7 Adult Hindgut    4.4 Adult Malpighian Tubules    3.4 Adult Fat Body    7.4 Adult Salivary Gland    9.3 Adult Heart    12.775 Adult VirginFemale Spermatheca    5 Adult InseminatedFemale Spermatheca    3.3 Adult Ovary    4.7 Adult Testis    4.6 Adult Male Accessory Gland    17.1 Adult Carcass    7.7 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    10.625 Larval Midgut    6.4 Larval Hindgut    6.3 Larval Malpighian Tubules    5.8 Larval Fat Body    8 Larval Salivary Gland    12 Larval Trachea    2.8 Larval Carcass    2.125 Adult Head    9.5 Adult Eye    5.3 Adult Brain    26.4 Adult Thoracic-Abdominal Ganglion    25.4 Adult Crop    7.1 Adult Midgut    8.7 Adult Hindgut    4.4 Adult Malpighian Tubules    3.4 Adult Fat Body    7.4 Adult Salivary Gland    9.3 Adult Heart    12.775 Adult VirginFemale Spermatheca    5 Adult InseminatedFemale Spermatheca    3.3 Adult Ovary    4.7 Adult Testis    4.6 Adult Male Accessory Gland    17.1 Adult Carcass    7.7 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    10.625 Larval Midgut    6.4 Larval Hindgut    6.3 Larval Malpighian Tubules    5.8 Larval Fat Body    8 Larval Salivary Gland    12 Larval Trachea    2.8 Larval Carcass    2.125 Adult Head    9.5 Adult Eye    5.3 Adult Brain    26.4 Adult Thoracic-Abdominal Ganglion    25.4 Adult Crop    7.1 Adult Midgut    8.7 Adult Hindgut    4.4 Adult Malpighian Tubules    3.4 Adult Fat Body    7.4 Adult Salivary Gland    9.3 Adult Heart    12.775 Adult VirginFemale Spermatheca    5 Adult InseminatedFemale Spermatheca    3.3 Adult Ovary    4.7 Adult Testis    4.6 Adult Male Accessory Gland    17.1 Adult Carcass    7.7 Expression Level Scale  None   Low  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    10.625 Larval Midgut    6.4 Larval Hindgut    6.3 Larval Malpighian Tubules    5.8 Larval Fat Body    8 Larval Salivary Gland    12 Larval Trachea    2.8 Larval Carcass    2.125 Adult Head    9.5 Adult Eye    5.3 Adult Brain    26.4 Adult Thoracic-Abdominal Ganglion    25.4 Adult Crop    7.1 Adult Midgut    8.7 Adult Hindgut    4.4 Adult Malpighian Tubules    3.4 Adult Fat Body    7.4 Adult Salivary Gland    9.3 Adult Heart    12.775 Adult VirginFemale Spermatheca    5 Adult InseminatedFemale Spermatheca    3.3 Adult Ovary    4.7 Adult Testis    4.6 Adult Male Accessory Gland    17.1 Adult Carcass    7.7 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    10.625 Larval Midgut    6.4 Larval Hindgut    6.3 Larval Malpighian Tubules    5.8 Larval Fat Body    8 Larval Salivary Gland    12 Larval Trachea    2.8 Larval Carcass    2.125 Adult Head    9.5 Adult Eye    5.3 Adult Brain    26.4 Adult Thoracic-Abdominal Ganglion    25.4 Adult Crop    7.1 Adult Midgut    8.7 Adult Hindgut    4.4 Adult Malpighian Tubules    3.4 Adult Fat Body    7.4 Adult Salivary Gland    9.3 Adult Heart    12.775 Adult VirginFemale Spermatheca    5 Adult InseminatedFemale Spermatheca    3.3 Adult Ovary    4.7 Adult Testis    4.6 Adult Male Accessory Gland    17.1 Adult Carcass    7.7 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    10.625 Larval Midgut    6.4 Larval Hindgut    6.3 Larval Malpighian Tubules    5.8 Larval Fat Body    8 Larval Salivary Gland    12 Larval Trachea    2.8 Larval Carcass    2.125 Adult Head    9.5 Adult Eye    5.3 Adult Brain    26.4 Adult Thoracic-Abdominal Ganglion    25.4 Adult Crop    7.1 Adult Midgut    8.7 Adult Hindgut    4.4 Adult Malpighian Tubules    3.4 Adult Fat Body    7.4 Adult Salivary Gland    9.3 Adult Heart    12.775 Adult VirginFemale Spermatheca    5 Adult InseminatedFemale Spermatheca    3.3 Adult Ovary    4.7 Adult Testis    4.6 Adult Male Accessory Gland    17.1 Adult Carcass    7.7 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    9.5   NA  Eye    5.3   NA  Brain    26.4   10.625  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    25.4   NA  Crop    7.1   6.4  Midgut    8.7   6.3  Hindgut    4.4   5.8  Malpighian Tubules    3.4   8  Fat Body    7.4   no informative data  Salivary Gland    9.3   NA  Heart    no informative data   2.8  Trachea    NA   NA  VirginFemale Spermatheca    5   NA  InseminatedFemale Spermatheca    3.3   NA  Ovary    4.7   NA  Testis    4.6   NA  Male Accessory Gland    no informative data   2.125  Carcass    7.7 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    7 central nervous system, pupae P8    24 head, virgin 1-day female    5 head, virgin 4-day female    5 head, virgin 20-day female    3 head, mated 1-day female    4 head, mated 4-day female    4 head, mated 20-day female    3 head, mated 1-day male    8 head, mated 4-day male    7 head, mated 20-day male    7 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    0 fat body, pupae P8    5 carcass, larvae L3 wandering    2 carcass, 1-day adult    1 carcass, 4-day adult    1 carcass, 20-day adult    1 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    0 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    7 central nervous system, pupae P8    24 head, virgin 1-day female    5 head, virgin 4-day female    5 head, virgin 20-day female    3 head, mated 1-day female    4 head, mated 4-day female    4 head, mated 20-day female    3 head, mated 1-day male    8 head, mated 4-day male    7 head, mated 20-day male    7 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    0 fat body, pupae P8    5 carcass, larvae L3 wandering    2 carcass, 1-day adult    1 carcass, 4-day adult    1 carcass, 20-day adult    1 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    0 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    7 central nervous system, pupae P8    24 head, virgin 1-day female    5 head, virgin 4-day female    5 head, virgin 20-day female    3 head, mated 1-day female    4 head, mated 4-day female    4 head, mated 20-day female    3 head, mated 1-day male    8 head, mated 4-day male    7 head, mated 20-day male    7 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    0 fat body, pupae P8    5 carcass, larvae L3 wandering    2 carcass, 1-day adult    1 carcass, 4-day adult    1 carcass, 20-day adult    1 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    0 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    7 central nervous system, pupae P8    24 head, virgin 1-day female    5 head, virgin 4-day female    5 head, virgin 20-day female    3 head, mated 1-day female    4 head, mated 4-day female    4 head, mated 20-day female    3 head, mated 1-day male    8 head, mated 4-day male    7 head, mated 20-day male    7 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    0 fat body, pupae P8    5 carcass, larvae L3 wandering    2 carcass, 1-day adult    1 carcass, 4-day adult    1 carcass, 20-day adult    1 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    0 accessory gland, mated 4-day male    1 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    7 central nervous system, pupae P8    24 head, virgin 1-day female    5 head, virgin 4-day female    5 head, virgin 20-day female    3 head, mated 1-day female    4 head, mated 4-day female    4 head, mated 20-day female    3 head, mated 1-day male    8 head, mated 4-day male    7 head, mated 20-day male    7 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    0 fat body, pupae P8    5 carcass, larvae L3 wandering    2 carcass, 1-day adult    1 carcass, 4-day adult    1 carcass, 20-day adult    1 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    0 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    7 central nervous system, pupae P8    24 head, virgin 1-day female    5 head, virgin 4-day female    5 head, virgin 20-day female    3 head, mated 1-day female    4 head, mated 4-day female    4 head, mated 20-day female    3 head, mated 1-day male    8 head, mated 4-day male    7 head, mated 20-day male    7 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    0 fat body, pupae P8    5 carcass, larvae L3 wandering    2 carcass, 1-day adult    1 carcass, 4-day adult    1 carcass, 20-day adult    1 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    0 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    7 central nervous system, pupae P8    24 head, virgin 1-day female    5 head, virgin 4-day female    5 head, virgin 20-day female    3 head, mated 1-day female    4 head, mated 4-day female    4 head, mated 20-day female    3 head, mated 1-day male    8 head, mated 4-day male    7 head, mated 20-day male    7 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    0 fat body, pupae P8    5 carcass, larvae L3 wandering    2 carcass, 1-day adult    1 carcass, 4-day adult    1 carcass, 20-day adult    1 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    0 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    7 central nervous system, pupae P8    24 head, virgin 1-day female    5 head, virgin 4-day female    5 head, virgin 20-day female    3 head, mated 1-day female    4 head, mated 4-day female    4 head, mated 20-day female    3 head, mated 1-day male    8 head, mated 4-day male    7 head, mated 20-day male    7 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    0 fat body, pupae P8    5 carcass, larvae L3 wandering    2 carcass, 1-day adult    1 carcass, 4-day adult    1 carcass, 20-day adult    1 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    0 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of extremely low expression. Peak expression observed within 12-24 hour embryonic stages, during late pupal stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    1 embryo 06-08hr    5 embryo 08-10hr    7 embryo 10-12hr    7 embryo 12-14hr    7 embryo 14-16hr    9 embryo 16-18hr    9 embryo 18-20hr    8 embryo 20-22hr    4 embryo 22-24hr    5 larva L1    4 larva L2    2 larva L3 12hr old    1 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    1 larva L3 puffstage 7-9    2 white prepupae new    2 white prepupae 12hr    4 white prepupae 24hr    5 pupae 2d postWPP    6 pupae 3d postWPP    9 pupae 4d postWPP    2 adult male 01day    2 adult male 05day    2 adult male 30day    2 adult female 01day    1 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    1 embryo 06-08hr    5 embryo 08-10hr    7 embryo 10-12hr    7 embryo 12-14hr    7 embryo 14-16hr    9 embryo 16-18hr    9 embryo 18-20hr    8 embryo 20-22hr    4 embryo 22-24hr    5 larva L1    4 larva L2    2 larva L3 12hr old    1 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    1 larva L3 puffstage 7-9    2 white prepupae new    2 white prepupae 12hr    4 white prepupae 24hr    5 pupae 2d postWPP    6 pupae 3d postWPP    9 pupae 4d postWPP    2 adult male 01day    2 adult male 05day    2 adult male 30day    2 adult female 01day    1 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    1 embryo 06-08hr    5 embryo 08-10hr    7 embryo 10-12hr    7 embryo 12-14hr    7 embryo 14-16hr    9 embryo 16-18hr    9 embryo 18-20hr    8 embryo 20-22hr    4 embryo 22-24hr    5 larva L1    4 larva L2    2 larva L3 12hr old    1 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    1 larva L3 puffstage 7-9    2 white prepupae new    2 white prepupae 12hr    4 white prepupae 24hr    5 pupae 2d postWPP    6 pupae 3d postWPP    9 pupae 4d postWPP    2 adult male 01day    2 adult male 05day    2 adult male 30day    2 adult female 01day    1 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    1 embryo 06-08hr    5 embryo 08-10hr    7 embryo 10-12hr    7 embryo 12-14hr    7 embryo 14-16hr    9 embryo 16-18hr    9 embryo 18-20hr    8 embryo 20-22hr    4 embryo 22-24hr    5 larva L1    4 larva L2    2 larva L3 12hr old    1 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    1 larva L3 puffstage 7-9    2 white prepupae new    2 white prepupae 12hr    4 white prepupae 24hr    5 pupae 2d postWPP    6 pupae 3d postWPP    9 pupae 4d postWPP    2 adult male 01day    2 adult male 05day    2 adult male 30day    2 adult female 01day    1 adult female 05day    0 adult female 30day    0 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    1 embryo 06-08hr    5 embryo 08-10hr    7 embryo 10-12hr    7 embryo 12-14hr    7 embryo 14-16hr    9 embryo 16-18hr    9 embryo 18-20hr    8 embryo 20-22hr    4 embryo 22-24hr    5 larva L1    4 larva L2    2 larva L3 12hr old    1 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    1 larva L3 puffstage 7-9    2 white prepupae new    2 white prepupae 12hr    4 white prepupae 24hr    5 pupae 2d postWPP    6 pupae 3d postWPP    9 pupae 4d postWPP    2 adult male 01day    2 adult male 05day    2 adult male 30day    2 adult female 01day    1 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    1 embryo 06-08hr    5 embryo 08-10hr    7 embryo 10-12hr    7 embryo 12-14hr    7 embryo 14-16hr    9 embryo 16-18hr    9 embryo 18-20hr    8 embryo 20-22hr    4 embryo 22-24hr    5 larva L1    4 larva L2    2 larva L3 12hr old    1 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    1 larva L3 puffstage 7-9    2 white prepupae new    2 white prepupae 12hr    4 white prepupae 24hr    5 pupae 2d postWPP    6 pupae 3d postWPP    9 pupae 4d postWPP    2 adult male 01day    2 adult male 05day    2 adult male 30day    2 adult female 01day    1 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    1 embryo 06-08hr    5 embryo 08-10hr    7 embryo 10-12hr    7 embryo 12-14hr    7 embryo 14-16hr    9 embryo 16-18hr    9 embryo 18-20hr    8 embryo 20-22hr    4 embryo 22-24hr    5 larva L1    4 larva L2    2 larva L3 12hr old    1 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    1 larva L3 puffstage 7-9    2 white prepupae new    2 white prepupae 12hr    4 white prepupae 24hr    5 pupae 2d postWPP    6 pupae 3d postWPP    9 pupae 4d postWPP    2 adult male 01day    2 adult male 05day    2 adult male 30day    2 adult female 01day    1 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    1 embryo 06-08hr    5 embryo 08-10hr    7 embryo 10-12hr    7 embryo 12-14hr    7 embryo 14-16hr    9 embryo 16-18hr    9 embryo 18-20hr    8 embryo 20-22hr    4 embryo 22-24hr    5 larva L1    4 larva L2    2 larva L3 12hr old    1 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    1 larva L3 puffstage 7-9    2 white prepupae new    2 white prepupae 12hr    4 white prepupae 24hr    5 pupae 2d postWPP    6 pupae 3d postWPP    9 pupae 4d postWPP    2 adult male 01day    2 adult male 05day    2 adult male 30day    2 adult female 01day    1 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    1 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    2 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    1 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    1 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    1 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    2 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    1 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    2 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    1 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    1 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    1 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    2 heat shock, 4-day adult    0 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    0 Cadmium 50 mM 48 hrs, 4-day adult    0 Cadmium 100 mM 48 hrs, 4-day adult    1 Copper 0.5 mM 12 hrs, larvae L3    0 Copper 15 mM 48 hrs, 4-day adult    1 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    1 Ethanol 5% 3 hrs, larvae L3    0 Ethanol 10% 3 hrs, larvae L3    0 Caffeine 1.5 mg/ml 4 hrs, larvae L3    0 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1 Caffeine 25 mg/ml 48 hrs, 4-day adult    1 Paraquat 5 mM 48 hrs, 4-day adult    1 Paraquat 10 mM 48 hrs, 4-day adult    1 Rotenone 2 μg 12 hrs, larvae L3    0 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    2 heat shock, 4-day adult    0 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    0 Cadmium 50 mM 48 hrs, 4-day adult    0 Cadmium 100 mM 48 hrs, 4-day adult    1 Copper 0.5 mM 12 hrs, larvae L3    0 Copper 15 mM 48 hrs, 4-day adult    1 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    1 Ethanol 5% 3 hrs, larvae L3    0 Ethanol 10% 3 hrs, larvae L3    0 Caffeine 1.5 mg/ml 4 hrs, larvae L3    0 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1 Caffeine 25 mg/ml 48 hrs, 4-day adult    1 Paraquat 5 mM 48 hrs, 4-day adult    1 Paraquat 10 mM 48 hrs, 4-day adult    1 Rotenone 2 μg 12 hrs, larvae L3    0 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    2 heat shock, 4-day adult    0 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    0 Cadmium 50 mM 48 hrs, 4-day adult    0 Cadmium 100 mM 48 hrs, 4-day adult    1 Copper 0.5 mM 12 hrs, larvae L3    0 Copper 15 mM 48 hrs, 4-day adult    1 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    1 Ethanol 5% 3 hrs, larvae L3    0 Ethanol 10% 3 hrs, larvae L3    0 Caffeine 1.5 mg/ml 4 hrs, larvae L3    0 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1 Caffeine 25 mg/ml 48 hrs, 4-day adult    1 Paraquat 5 mM 48 hrs, 4-day adult    1 Paraquat 10 mM 48 hrs, 4-day adult    1 Rotenone 2 μg 12 hrs, larvae L3    0 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    2 heat shock, 4-day adult    0 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    0 Cadmium 50 mM 48 hrs, 4-day adult    0 Cadmium 100 mM 48 hrs, 4-day adult    1 Copper 0.5 mM 12 hrs, larvae L3    0 Copper 15 mM 48 hrs, 4-day adult    1 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    1 Ethanol 5% 3 hrs, larvae L3    0 Ethanol 10% 3 hrs, larvae L3    0 Caffeine 1.5 mg/ml 4 hrs, larvae L3    0 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1 Caffeine 25 mg/ml 48 hrs, 4-day adult    1 Paraquat 5 mM 48 hrs, 4-day adult    1 Paraquat 10 mM 48 hrs, 4-day adult    1 Rotenone 2 μg 12 hrs, larvae L3    0 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    2 heat shock, 4-day adult    0 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    0 Cadmium 50 mM 48 hrs, 4-day adult    0 Cadmium 100 mM 48 hrs, 4-day adult    1 Copper 0.5 mM 12 hrs, larvae L3    0 Copper 15 mM 48 hrs, 4-day adult    1 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    1 Ethanol 5% 3 hrs, larvae L3    0 Ethanol 10% 3 hrs, larvae L3    0 Caffeine 1.5 mg/ml 4 hrs, larvae L3    0 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1 Caffeine 25 mg/ml 48 hrs, 4-day adult    1 Paraquat 5 mM 48 hrs, 4-day adult    1 Paraquat 10 mM 48 hrs, 4-day adult    1 Rotenone 2 μg 12 hrs, larvae L3    0 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    2 heat shock, 4-day adult    0 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    0 Cadmium 50 mM 48 hrs, 4-day adult    0 Cadmium 100 mM 48 hrs, 4-day adult    1 Copper 0.5 mM 12 hrs, larvae L3    0 Copper 15 mM 48 hrs, 4-day adult    1 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    1 Ethanol 5% 3 hrs, larvae L3    0 Ethanol 10% 3 hrs, larvae L3    0 Caffeine 1.5 mg/ml 4 hrs, larvae L3    0 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1 Caffeine 25 mg/ml 48 hrs, 4-day adult    1 Paraquat 5 mM 48 hrs, 4-day adult    1 Paraquat 10 mM 48 hrs, 4-day adult    1 Rotenone 2 μg 12 hrs, larvae L3    0 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    2 heat shock, 4-day adult    0 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    0 Cadmium 50 mM 48 hrs, 4-day adult    0 Cadmium 100 mM 48 hrs, 4-day adult    1 Copper 0.5 mM 12 hrs, larvae L3    0 Copper 15 mM 48 hrs, 4-day adult    1 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    1 Ethanol 5% 3 hrs, larvae L3    0 Ethanol 10% 3 hrs, larvae L3    0 Caffeine 1.5 mg/ml 4 hrs, larvae L3    0 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1 Caffeine 25 mg/ml 48 hrs, 4-day adult    1 Paraquat 5 mM 48 hrs, 4-day adult    1 Paraquat 10 mM 48 hrs, 4-day adult    1 Rotenone 2 μg 12 hrs, larvae L3    0 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    2 heat shock, 4-day adult    0 Cadmium 50 mM 6 hrs, larvae L3    0 Cadmium 50 mM 12 hrs, larvae L3    0 Cadmium 50 mM 48 hrs, 4-day adult    0 Cadmium 100 mM 48 hrs, 4-day adult    1 Copper 0.5 mM 12 hrs, larvae L3    0 Copper 15 mM 48 hrs, 4-day adult    1 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    1 Ethanol 5% 3 hrs, larvae L3    0 Ethanol 10% 3 hrs, larvae L3    0 Caffeine 1.5 mg/ml 4 hrs, larvae L3    0 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1 Caffeine 25 mg/ml 48 hrs, 4-day adult    1 Paraquat 5 mM 48 hrs, 4-day adult    1 Paraquat 10 mM 48 hrs, 4-day adult    1 Rotenone 2 μg 12 hrs, larvae L3    0 Rotenone 8 μg 12 hrs, larvae L3    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_29
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0016061 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG31062-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 sideGD321 Other Phenotypes Allele neuroanatomy defective sideC137 sideH143 sideP45 neuroanatomy defective, with Scer\GAL4elav.PLu, sideD609 sideScer\UAS.cSa neuroanatomy defective, with Scer\GAL4elav.PLu, sideScer\UAS.cSa sideD609 neuroanatomy defective (with Df(3R)Tl-P) sideC137 sideD282 sideD609 sideH143 sideP45 neuroanatomy defective (with sideC137) sideI1563 neuroanatomy defective (with sideI1563) sideC137 neuroanatomy defective | embryonic stage, with Scer\GAL4btl.PS, sideI1563/sideC137 sideScer\UAS.cSa neuroanatomy defective | embryonic stage, with Scer\GAL4Mef2.PR sideScer\UAS.cSa neuroanatomy defective | embryonic stage, with Scer\GAL4srp, sideI1563/sideC137 sideScer\UAS.cSa neuroanatomy defective | embryonic stage (with sideC137) sideI1563 neuroanatomy defective | embryonic stage (with sideC137), with Scer\GAL4btl.PS, sideScer\UAS.cSa sideI1563 neuroanatomy defective | embryonic stage (with sideC137), with Scer\GAL4srp, sideScer\UAS.cSa sideI1563 neuroanatomy defective | embryonic stage (with sideI1563) sideC137 neuroanatomy defective | embryonic stage (with sideI1563), with Scer\GAL4btl.PS, sideScer\UAS.cSa sideC137 neuroanatomy defective | embryonic stage (with sideI1563), with Scer\GAL4srp, sideScer\UAS.cSa sideC137 oxidative stress response defective sideMB07679 Phenotype manifest in Allele A1-7 dorsal acute muscle 1, with Scer\GAL4how-24B sideScer\UAS.cSa A1-7 dorsal acute muscle 1, with Scer\GAL4Mef2.PR sideScer\UAS.cSa A1-7 dorsal acute muscle 1 (with sideC137) sideI1563 A1-7 dorsal acute muscle 1 (with sideI1563) sideC137 A1-7 dorsal acute muscle 2, with Scer\GAL4how-24B sideScer\UAS.cSa A1-7 dorsal acute muscle 2, with Scer\GAL4Mef2.PR sideScer\UAS.cSa A1-7 dorsal acute muscle 2 (with sideC137) sideI1563 A1-7 dorsal acute muscle 2 (with sideI1563) sideC137 A1-7 dorsal oblique muscle 1, with Scer\GAL4how-24B sideScer\UAS.cSa A1-7 dorsal oblique muscle 1, with Scer\GAL4Mef2.PR sideScer\UAS.cSa A1-7 dorsal oblique muscle 1 (with sideC137) sideI1563 A1-7 dorsal oblique muscle 1 (with sideI1563) sideC137 A1-7 ventral longitudinal muscle 1 (with sideC137) sideI1563 A1-7 ventral longitudinal muscle 1 (with sideI1563) sideC137 A1-7 ventral longitudinal muscle 2 (with sideC137) sideI1563 A1-7 ventral longitudinal muscle 2 (with sideI1563) sideC137 A1-7 ventral longitudinal muscle 3 (with sideC137) sideI1563 A1-7 ventral longitudinal muscle 3 (with sideI1563) sideC137 A1-7 ventral longitudinal muscle 4 (with sideC137) sideI1563 A1-7 ventral longitudinal muscle 4 (with sideI1563) sideC137 A1-7 VL3/4 motor neuron sideD609 A1-7 VO1 motor neuron sideD609 A1-7 VO2 motor neuron sideD609 A2-7 dorsal oblique muscle 2, with Scer\GAL4how-24B sideScer\UAS.cSa A2-7 dorsal oblique muscle 2, with Scer\GAL4Mef2.PR sideScer\UAS.cSa A2-7 dorsal oblique muscle 2 (with sideC137) sideI1563 A2-7 dorsal oblique muscle 2 (with sideI1563) sideC137 abdominal intersegmental nerve sideunspecified abdominal intersegmental nerve, with Scer\GAL4C38 sideScer\UAS.cSa abdominal intersegmental nerve, with Scer\GAL4elav.PLu sideScer\UAS.cSa abdominal intersegmental nerve, with Scer\GAL4elav.PLu, sideD609 sideScer\UAS.cSa abdominal intersegmental nerve, with Scer\GAL4elav.PLu, sideScer\UAS.cSa sideD609 abdominal intersegmental nerve, with Scer\GAL4l(3)H94-H94 sideScer\UAS.cSa abdominal intersegmental nerve (with Df(3R)Tl-P) sideC137 sideD282 sideD609 sideH143 sideP45 abdominal segmental nerve sideunspecified abdominal segmental nerve, with Scer\GAL4elav.PLu, sideD609 sideScer\UAS.cSa abdominal segmental nerve, with Scer\GAL4elav.PLu, sideScer\UAS.cSa sideD609 abdominal segmental nerve (with Df(3R)Tl-P) sideC137 sideD282 sideD609 sideH143 sideP45 growth cone & intersegmental nerve (with sideC137) sideI1563 growth cone & intersegmental nerve (with sideI1563) sideC137 intersegmental nerve, with Scer\GAL4btl.PS, sideI1563/sideC137 sideScer\UAS.cSa intersegmental nerve, with Scer\GAL4Mef2.PR sideScer\UAS.cSa intersegmental nerve, with Scer\GAL4srp, sideI1563/sideC137 sideScer\UAS.cSa intersegmental nerve (with sideC137) sideI1563 intersegmental nerve (with sideC137), with Scer\GAL4btl.PS, sideScer\UAS.cSa sideI1563 intersegmental nerve (with sideC137), with Scer\GAL4srp, sideScer\UAS.cSa sideI1563 intersegmental nerve (with sideI1563) sideC137 intersegmental nerve (with sideI1563), with Scer\GAL4btl.PS, sideScer\UAS.cSa sideC137 intersegmental nerve (with sideI1563), with Scer\GAL4srp, sideScer\UAS.cSa sideC137 intersegmental nerve | embryonic stage sideC137 larval neuromuscular junction & abdominal dorsal acute muscle 1 (with sideC137) sideI1563 larval neuromuscular junction & abdominal dorsal acute muscle 1 (with sideI1563) sideC137 larval neuromuscular junction & abdominal dorsal acute muscle 2 (with sideC137) sideI1563 larval neuromuscular junction & abdominal dorsal acute muscle 2 (with sideI1563) sideC137 larval neuromuscular junction & abdominal dorsal oblique muscle 1 (with sideC137) sideI1563 larval neuromuscular junction & abdominal dorsal oblique muscle 1 (with sideI1563) sideC137 larval neuromuscular junction & abdominal dorsal oblique muscle 2 (with sideC137) sideI1563 larval neuromuscular junction & abdominal dorsal oblique muscle 2 (with sideI1563) sideC137 larval neuromuscular junction & abdominal lateral transverse muscle 1 (with sideC137) sideI1563 larval neuromuscular junction & abdominal lateral transverse muscle 1 (with sideI1563) sideC137 larval neuromuscular junction & abdominal lateral transverse muscle 2 (with sideC137) sideI1563 larval neuromuscular junction & abdominal lateral transverse muscle 2 (with sideI1563) sideC137 larval neuromuscular junction & abdominal lateral transverse muscle 3 (with sideC137) sideI1563 larval neuromuscular junction & abdominal lateral transverse muscle 3 (with sideI1563) sideC137 larval neuromuscular junction & abdominal lateral transverse muscle 4 (with sideC137) sideI1563 larval neuromuscular junction & abdominal lateral transverse muscle 4 (with sideI1563) sideC137 larval neuromuscular junction & abdominal ventral acute muscle 1 (with sideC137) sideI1563 larval neuromuscular junction & abdominal ventral acute muscle 1 (with sideI1563) sideC137 larval neuromuscular junction & abdominal ventral acute muscle 2 (with sideC137) sideI1563 larval neuromuscular junction & abdominal ventral acute muscle 2 (with sideI1563) sideC137 larval neuromuscular junction & abdominal ventral acute muscle 3 (with sideC137) sideI1563 larval neuromuscular junction & abdominal ventral acute muscle 3 (with sideI1563) sideC137 larval neuromuscular junction & abdominal ventral longitudinal muscle 1 (with sideC137) sideI1563 larval neuromuscular junction & abdominal ventral longitudinal muscle 1 (with sideI1563) sideC137 larval neuromuscular junction & abdominal ventral longitudinal muscle 2 (with sideC137) sideI1563 larval neuromuscular junction & abdominal ventral longitudinal muscle 2 (with sideI1563) sideC137 larval neuromuscular junction & abdominal ventral longitudinal muscle 3 (with sideC137) sideI1563 larval neuromuscular junction & abdominal ventral longitudinal muscle 3 (with sideI1563) sideC137 larval neuromuscular junction & abdominal ventral longitudinal muscle 4 (with sideC137) sideI1563 larval neuromuscular junction & abdominal ventral longitudinal muscle 4 (with sideI1563) sideC137 larval neuromuscular junction & abdominal ventral oblique muscle 4 (with sideC137) sideI1563 larval neuromuscular junction & abdominal ventral oblique muscle 4 (with sideI1563) sideC137 larval neuromuscular junction & abdominal ventral oblique muscle 5 (with sideC137) sideI1563 larval neuromuscular junction & abdominal ventral oblique muscle 5 (with sideI1563) sideC137 larval neuromuscular junction & abdominal ventral oblique muscle 6 (with sideC137) sideI1563 larval neuromuscular junction & abdominal ventral oblique muscle 6 (with sideI1563) sideC137 motor neuron, with Scer\GAL4elav.PLu sideScer\UAS.cSa motor neuron | larval stage sideD609 segmental nerve | embryonic stage sideC137
Classical Alleles ( 14 )
For All Classical Alleles Show
Allele of side Class Mutagen Stocks Known lesion sidef00677 piggyBac transposase 2 -- sideC137 ethyl methanesulfonate 1 -- sideD609 ethyl methanesulfonate 1 -- sideH143 ethyl methanesulfonate 1 -- sideMB00161 1 -- sideMB07679 1 -- sideMI00149 1 -- sideMI03741 1 -- sideD282 ethyl methanesulfonate 0 -- sideI1563 ethyl methanesulfonate 0 -- sideI306 ethyl methanesulfonate 0 -- sideK717 ethyl methanesulfonate 0 -- sideP45 ethyl methanesulfonate 0 -- sideunspecified 0 --
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of side Class Mutagen Stocks Known lesion sideGD321 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes sideScer\UAS.cSa in vitro construct - regulatory fusion 1 Yes sideMtnA.PS in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(3R)Tl-P (Sink et al., 2001)
Not disrupted in	Df(3R)Bd (Sink et al., 2001)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD321} NA P{UAS-side.S} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions Mi{MIC}sideMI00149 NA Mi{MIC}sideMI03741 NA PBac{WH}sidef00677 NA insertion of enhancer trap binary system Mi{ET1}sideMB00161 No Mi{ET1}sideMB07679 No
Gene Ontology: Function, Process & Cellular Component ( 1 unique term )
Terms Based on Experimental Evidence ( 1 term )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
motor neuron axon guidance inferred from mutant phenotype (Sink et al., 2001, Meyer and Aberle, 2006, Siebert et al., 2009)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
side - dgrn pull down, autoradiography (Barry et al., 2011)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions side allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 68186 DroID - A comprehensive database of gene and protein interactions. • FBgn0016061 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 43300
Orthologs
OrthoDB Orthologs (36) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG637S09 Dipteran inclusive ortholog search EOG602X17 Insect inclusive ortholog search EOG6B5N16 Arthropod inclusive ortholog search No orthologs identified Metazoa inclusive ortholog search EOG6KM9VS
Orthologs in Drosophila Species (EOG637S09)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\side     Drosophila simulans   Dsim\GD18079 Y   Drosophila sechellia   Dsec\GM10106 Y   Drosophila erecta   Dere\GG12115 Y   Drosophila yakuba   Dyak\GE10563 Y   Drosophila ananassae   Dana\GF18710 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA15977 Y   Drosophila persimilis   Dper\GL23588 Y   Drosophila willistoni   Dwil\GK11337 Y   Drosophila virilis   Dvir\GJ22633 Y   Drosophila mojavensis   Dmoj\GI24567 Y   Drosophila grimshawi   Dgri\GH23808 Y
Orthologs in non-Drosophila Dipterans (EOG602X17)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL014839   Anopheles gambiae Malaria mosquito  Agam\AGAP001674   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ001850
Orthologs in non-Dipteran Insects (EOG6B5N16)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB44550   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG026117   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH27087   Atta cephalotes Leafcutter ant  Acep\ACEP14328   Camponotus floridanus Florida carpenter ant  Cflo\CFLO15909   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL14576   Linepithema humile Argentine ant  Lhum\LH17676   Pogonomyrmex barbatus Red harvester ant  Pbar\PB13419   Solenopsis invicta Red fire ant  Sinv\SINV15827   Pediculus humanus Human body louse  Phum\PHUM312550   Tribolium castaneum Red flour beetle  Tcas\TC009766
Orthologs in non-Insect Arthropods (None identified)
No non-Insect Arthropod orthologies identified
Orthologs in non-Arthropod Metazoa (EOG6KM9VS)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_021747gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_012355gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_024881gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_028889gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_017023gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_007016gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_008771gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_021904gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_014031gn Y Danio rerio Zebrafish  Drer\ENSDARG00000086799 Y
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD18079 Drosophila sechellia Dsec\GM10106 Drosophila erecta Dere\GG12115 Drosophila yakuba Dyak\GE10563 Drosophila ananassae Dana\GF18710 Drosophila pseudoobscura pseudoobscura Dpse\GA15977 Drosophila persimilis Dper\GL23588 Drosophila willistoni Dwil\GK11337 Drosophila virilis Dvir\GJ22633 Drosophila mojavensis Dmoj\GI24567 Drosophila grimshawi Dgri\GH23808
Stocks & Reagents
Stocks Listed in FlyBase ( 12 )
Bloomington	9679 P{UAS-side.S}46, w* 9677 w*; sideH143/TM2 9678 w*; sideD609/TM2 9680 sideC137/TM3, Ser1 25649 w1118; Mi{ET1}sideMB07679 30808 y1 w*; Mi{MIC}sideMI00149 23303 y1 w67c23; Mi{ET1}sideMB00161 18358 w1118; PBac{WH}sidef00677/TM6B, Tb1 38032 y1 w*; Mi{MIC}sideMI03741/TM3, Sb1 Ser1
Harvard	- PBac{WH}sidef00677
VDRC	v1283 w1118; P{GD321}v1283 v1284 w1118; P{GD321}v1284/TM3
Genomic Clones ( 3 )
	BACR02B05 BACR27H07 BACR31P16 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 10 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones	RT06290 RT09994
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	SD05637
Other clones	79188 106863 EK173034 EK173129 EK208855 EP11560 SD04105
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0016061 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 43300
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments	Annotations CG12510, CG13975, CG13979 merged as CG31062 in release 3 of the genome annotation. (FlyBase Genome Annotators, 2002-2003)
Other Comments
	side is essential for motor axons to leave the motor nerves and enter their muscle targets. (Sink et al., 2001) Mutant alleles are defective in motor neuron defasciculation. (Sink and Goodman, 1996)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_079806 NM_001144645 NM_001260405 NM_001260406 RefSeq (Proteins) • NP_524530 NP_001138117 NP_001247334 NP_001247335 DDBJ / EMBL / GenBank • AAF56708 AAK40237 ACL83573 AF358267 AFH06651 AFH06652 Entrez Gene - A searchable database of RefSeq genes. • 43300 UniProtKB/TrEMBL • B7Z0R1 Q9VB35 Q967X6
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Immunoglobulin subtype 2 (IPR003598) Immunoglobulin subtype (IPR003599) Fibronectin, type III (IPR003961) Immunoglobulin-like domain (IPR007110) CD80-like, immunoglobulin C2-set (IPR013162) Immunoglobulin-like fold (IPR013783) Immunoglobulin V-set (IPR013106)
Linkouts
	BioGRID - A database of protein and genetic interactions • 68186 DroID - A comprehensive database of gene and protein interactions. • FBgn0016061 DRSC - Results from RNAi screens. • FBgn0016061 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0016061 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG31062-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0016061 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 43300 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 43300 modMine - Data generated by the modENCODE project. • FBgn0016061
Synonyms & Secondary IDs ( 15 )
Reported As
Symbol Synonym	CG12510   CG13973   CG13974   CG13975   CG13979   CG31062 (Vogel et al., 2003, Quinones-Coello, 2007) CT33527 (Hynes and Zhao, 2000) CT33528 (Hynes and Zhao, 2000) doe (Frederic, 2002.4.5) Doe (Frederic, 2002.4.5) side (Hoskins et al., 2005, Quinones-Coello, 2007, Meyer and Aberle, 2006, Yamamoto et al., 2009.2.25, Siebert et al., 2009, Campos et al., 2010, Wright et al., 2010, Jordan et al., 2012) Side (Barry et al., 2011)
Name Synonym	downstream of eyeless (Frederic, 2002.4.5) sidestep (Sink and Goodman, 1996, Meyer and Aberle, 2006, Campos et al., 2010, Wright et al., 2010) Sidestep (Cho et al., 2005, Siebert et al., 2009)
Secondary FlyBase IDs
	FBgn0039515 FBgn0039516 FBgn0039517 FBgn0040611 FBgn0040612 FBgn0051062 FBgn0063636
References ( 46 )
Generate a list of	All references relating to this gene ( 46 )
List References by type	Research paper  ( 11 ) Supplementary material  ( 6 ) Review  ( 6 ) Personal communication to FlyBase  ( 9 ) Abstract  ( 8 ) FlyBase analysis  ( 2 ) DNA/RNA sequence record  ( 1 ) Curated genome annotation  ( 2 )
Recent research papers ( 2 )
	Jordan et al., 2012, PLoS ONE 7(6): e38722 Genome-Wide Association for Sensitivity to Chronic Oxidative Stress in Drosophila melanogaster. [FBrf0218606] Barry et al., 2011, Development 138(9): 1759--1769 The Drosophila STUbL protein Degringolade limits HES functions during embryogenesis. [FBrf0213458] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2011 Show reviews ...