Gene Dmir\Hsp83

Help Close All Open All

General Information

Symbol

Dmir\Hsp83

Species

D. miranda

Name

Hsp83

Annotation symbol

Feature type

gene

FlyBase ID

FBgn0018795

Gene Model Status

Unannotated

Stock availability

None publicly available

Also Known As

Hsp82, hsp83

Genomic Location

Chromosome (arm)

Recombination map

X-

Cytogenetic map

Sequence location

Summary Information

Automatically generated summary

See sections below for more information

The gene Hsp83 is referred to in FlyBase by the symbol Dmir\Hsp83 (FBgn0018795). It is a gene from Drosophila miranda. Based on sequence similarity, it is predicted to have molecular function: ATPase activity, coupled. Based on sequence similarity, it is predicted to be involved in the biological process: response to heat. No alleles are reported. It has no annotated transcripts. Protein features are: Heat shock protein Hsp90; Heat shock protein Hsp90, N-terminal; Heat shock protein Hsp90, conserved site; Histidine kinase-like ATPase, ATP-binding domain. Gene has not been localized to the genome sequence.

Recent Updates

Description

What does this section display?

This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).

What does this section not display?

This section does not currently display links that were removed or gene model changes.

Update Feed

Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.

FB2013_03

FB2013_02

All updates

Click here to see a list of all updates to this record from FB2010_08 and on.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Maps to 19A (determined by in situ hybridisation).

(Bartolome and Charlesworth, 2006)

Experimentally Determined Recombination Data

Location

X-

(Wang, 1997.6.3)

Left of (cM)

Right of (cM)

Notes

Gene Model & Products

Comments on Gene Model

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

Additional Polypeptide Data & Comments

Reported size (kDa)

Comments

External Data

Linkouts

Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Heat shock protein Hsp90 (IPR001404)

Histidine kinase-like ATPase, ATP-binding domain (IPR003594)

Heat shock protein Hsp90, conserved site (IPR019805)

Heat shock protein Hsp90, N-terminal (IPR020575)

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

O16087

UniProtKB/TrEMBL

Mapped Features

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

Crossreferences

Expression Data

Transcript Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization (GO Cellular Component)

CV term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

Reference

See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

FlyAtlas Anatomy Microarray

modENCODE Anatomy RNA-Seq

modENCODE Development RNA-Seq

modENCODE Cell Lines RNA-Seq

modENCODE Treatments RNA-Seq

Expression Clusters

External Data & Images

Linkouts

Alleles & Phenotypes

Summary of Allele Phenotypes

Phenotype manifest in

Allele

Classical Alleles ( 0 )

For All Classical Alleles Show

Allele of Dmir\Hsp83	Class	Mutagen	Stocks	Known lesion

Alleles Carried on Transgenic Constructs ( 0 )

For All Alleles Carried on Transgenic Constructs Show

Allele of Dmir\Hsp83	Class	Mutagen	Stocks	Known lesion

Aneuploid Aberrations

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

Insertions

Type of insertions

Name

Expression data

Gene Ontology: Function, Process & Cellular Component ( 6 unique terms )

Terms Based on Experimental Evidence ( 0 terms )

Terms Based on Predictions or Assertions ( 6 terms )

Molecular Function

CV term

Evidence

References

ATPase activity, coupled

inferred from sequence or structural similarity with UniProtKB:P12861

(Swiss-Prot Project Members, 2002.6.15)

ATP binding

inferred from electronic annotation with InterPro:IPR001404, InterPro:IPR003594, InterPro:IPR019805

(FlyBase Curators et al., 2004-)

unfolded protein binding

inferred from electronic annotation with InterPro:IPR001404, InterPro:IPR019805

(FlyBase Curators et al., 2004-)

Biological Process

CV term

Evidence

References

protein folding

inferred from electronic annotation with InterPro:IPR001404, InterPro:IPR019805

(FlyBase Curators et al., 2004-)

response to heat

inferred from sequence or structural similarity with UniProtKB:P12861

(Swiss-Prot Project Members, 2002.6.15)

Cellular Component

CV term

Evidence

References

centrosome

inferred from sequence or structural similarity with UniProtKB:P12861

(Swiss-Prot Project Members, 2002.6.15)

Sequence Ontology: Class of Gene

gene

Interactions & Pathways

Summary of Physical Interactions

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

Dmir\Hsp83 allele

Gene

References

External Data

Linkouts

Orthologs

OrthoDB Orthologs (0) - based on analysis using Dmel annotation version 5.41

OrthoDB Ortholog Groups

OrthoDB orthology group searches

(Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288)

Drosophila inclusive ortholog search

No orthologs identified

Dipteran inclusive ortholog search

No orthologs identified

Insect inclusive ortholog search

No orthologs identified

Arthropod inclusive ortholog search

No orthologs identified

Metazoa inclusive ortholog search

No orthologs identified

Ortholog(s) in Drosophila melanogaster (None identified)

No D. melanogaster orthologies identified

Human Orthologs (0)

Gene

OMIM

HGNC

AAA Orthologs (0) based on analysis using Dmel annotation version 4.3

No orthologs identified

Stocks & Reagents

Stocks Listed in FlyBase ( 0 )

Genomic Clones ( 0 )

cDNA Clones ( 0 )

cDNA Clones, Fully Sequenced

BDGP DGC clones

Other clones

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi & Array Information

Linkouts

Antibody Information

Other Information

Discoverer

Etymology

Identification

Relationship to Other Genes

Source for database identity of

Source for database merge of

Additional comments

Other Comments

Chromosome homologies of Muller's element D (J chromosome in the Paleartic species and XR chromosome arm in Nearctic species) and of element E (O chromosome in the Paleartic species and 2 chromosome in Nearctic species) have been confirmed by single copy probes in the species of the obscura group and in D.melanogaster.

(Segarra et al., 1996)

External Crossreferences & Linkouts

Sequence Crossreferences

DDBJ / EMBL / GenBank

•

UniProtKB/Swiss-Prot

•

O16087

Other Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Heat shock protein Hsp90 (IPR001404)

Histidine kinase-like ATPase, ATP-binding domain (IPR003594)

Heat shock protein Hsp90, conserved site (IPR019805)

Heat shock protein Hsp90, N-terminal (IPR020575)

Linkouts

Synonyms & Secondary IDs ( 4 )

Reported As

Symbol Synonym

Dmir\Hsp83

Hsp82

(Machado et al., 2002, Wang, 1997.6.3, Wang, 1997.6.3, Wang, 1997.6.3, Wang, 1997.6.3, Wang et al., 1997)

hsp83

(Segarra et al., 1996)

Hsp83

(Bartolome and Charlesworth, 2006)

Name Synonym

Hsp83

Secondary FlyBase IDs

References ( 12 )

Research paper

Bartolome and Charlesworth, 2006, Genetics 173(2): 779--791: Rates and patterns of chromosomal evolution in Drosophila pseudoobscura and D. miranda. [FBrf0193909]
Bartolome et al., 2005, Genetics 169(3): 1495--1507: Patterns of selection on synonymous and nonsynonymous variants in Drosophila miranda. [FBrf0188496]
Machado et al., 2002, Mol. Biol. Evol. 19(4): 472--488: Inferring the history of speciation from multilocus DNA sequence data: the case of Drosophila pseudoobscura and close relatives. [FBrf0147148]
Kovacevic and Schaeffer, 2000, Genetics 156(1): 155--172: Molecular population genetics of X-linked genes in Drosophila pseudoobscura. [FBrf0129909]
Wang et al., 1997, Genetics 147(3): 1091--1106: Gene flow and natural selection in the origin of Drosophila pseudoobscura and close relatives. [FBrf0099597]
Segarra et al., 1996, Genetics 144(1): 139--146: Differentiation of Muller's chromosomal elements D and E in the obscura group of Drosophila. [FBrf0089823]

Personal communication to FlyBase

FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms.: Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215]

DNA/RNA sequence record

Wang, 1997.6.3, GenBank/EMBL/DDBJ: AF006563: Drosophila miranda strain miranda25 82 kDa heat shock protein (Hsp82) gene, partial cds. [FBrf0121903]
Wang, 1997.6.3, GenBank/EMBL/DDBJ: AF006562: Drosophila miranda strain miranda24 82 kDa heat shock protein (Hsp82) gene, partial cds. [FBrf0121902]
Wang, 1997.6.3, GenBank/EMBL/DDBJ: AF006561: Drosophila miranda strain miranda23 82 kDa heat shock protein (Hsp82) gene, partial cds. [FBrf0121901]
Wang, 1997.6.3, GenBank/EMBL/DDBJ: AF006560: Drosophila miranda strain miranda22 82 kDa heat shock protein (Hsp82) gene, partial cds. [FBrf0121900]

Protein sequence record

Swiss-Prot Project Members, 2002.6.15, UniProtKB: O16087: Heat shock protein 83 (HSP 82) (Fragment). [FBrf0156950]