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Gene Dmel\colt

General Information
Symbol	Dmel\colt	Species	D. melanogaster
Name	congested-like trachea	Annotation symbol	CG3057
Feature type	protein_coding_gene	FlyBase ID	FBgn0019830
Gene Model Status	Current	Stock availability	4 publicly available
Genomic Location
Chromosome (arm)	2L	Recombination map
Cytogenetic map	23A5-23A5	Sequence location	2L:2,768,590..2,770,066 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene congested-like trachea is referred to in FlyBase by the symbol Dmel\colt (CG3057, FBgn0019830). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: transporter activity; carnitine:acyl carnitine antiporter activity. There is experimental evidence that it is involved in the biological process: phagocytosis, engulfment. 9 alleles are reported. The phenotypes of these alleles are annotated with: embryonic/larval tracheal system; wing; wing vein. It has 4 annotated transcripts and 4 annotated polypeptides. Protein features are: Mitochondrial carrier domain; Mitochondrial substrate/solute carrier. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderately high expression. Peak expression observed within 00-18 hour embryonic stages, at stages throughout the larval period, during late pupal stages, in stages of adults of both sexes. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, adult crop, larval/adult midgut, adult hindgut, adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, adult spermathecae, adult male accessory gland, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult central nervous system, larval hindgut, larval Malpighian tubules, larval trachea, adult ovary, adult testis. Comments on Affy2 ProbeSet: ProbeSet 1628991_at completely aligns to an exonic region common to each of the 4 FlyBase-annotated transcript isoforms of colt. Gene sequence location is 2L:2768590..2770066.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2011_10
FB2012_01	Sequence features BKN46024 BKN27449
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 23A5-23A5   Limits computationally determined from genome sequence between P{EP}EP832 and P{PZ}oho23B03575
Experimentally Determined Cytological Location
Cytogenetic map Notes References 23A-23A     (Mechler, 1997.4.10) 23A-23A   (determined by in situ hybridisation)   (Hartenstein et al., 1997)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\colt for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Alternative polyA sites from FBrf0099765.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) colt-RA FBtr0077731  NM_057873   1477   306 colt-RB FBtr0077732  NM_205896   1468   306 colt-RC FBtr0077733  NM_205895   1462   306 colt-RD FBtr0077734  NM_205894   1449   306
Additional Transcript Data & Comments
Reported size (kB)	1.4 (northern blot) (Hartenstein et al., 1997)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein colt-PA   FBpp0077414   33.0   306   9.96     NP_477221   AAF51209 colt-PB   FBpp0089375   33.0   306   9.96     NP_995618   AAS64622 colt-PC   FBpp0089376   33.0   306   9.96     NP_995617   AAS64623 colt-PD   FBpp0089377   33.0   306   9.96     NP_995616   AAS64624
Additional Polypeptide Data & Comments
Reported size (kDa)	306 (aa); 33 (kD observed) (Hartenstein et al., 1997)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Mitochondrial substrate/solute carrier (IPR018108) Mitochondrial carrier domain (IPR023395) MitoDrome - A database of annotated Dmel nuclear genes encoding mitochondrial proteins • MTDROME03057
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA803450   AE014134 AAF51209   AE014134 AAS64622   AE014134 AAS64623   AE014134 AAS64624   AC004379   AC005558   AC009392   AI063819   AI064545   AI064563   AI106672   AI106827   AI107113   AI108894   AI133912   AI135368   AI135996   AI258372   AI388401   AI405779   AI511789   AI513226   AI514125   AY069277 AAL39422   AY121623   BG636173   BI167064   BI213364   BI243418   BI354430   BI487260   BI589463   BI642035   CO275069   CO304501   CO335852   CO341371   EC079784   EC088214   EC195777   EC208877   EC209239   EC260416   EL876416   EV575523   EV589364   EV593492   EV600407   GH747830   GH747999   GH748540   GH749134   GH749501   GH750663   GH753120   GH754246   GH754340   GH755815   GH759571   GH770666   GH771772   GH772190   GH772558   GH773401   GH774192   GH774307   GH776119   GH776835   GH778832   GH780334   GH780442   GH783915   GH784465   GH786389   GH786625   GH786757   GH787851   GH788767   GH790916   GH791648   GH793471   GH793592   GH793824   GH795146   GH795434   GH798168   GH800336   GH801352   GH803456   GH805613   GH807030   GH807238   GH807840   GH808481   GH808972   GH809364   GH809893   GH810342   GH810521   GH810613   GH811516   GH811805   GH811916   GH813478   GH815461   GH816532   GH823751   GH824202   GH824850   GH824895   GH825298   GH826255   GH826501   GH827394   GH828291   GH828595   GH830481   GH830683   GH830784   GH830787   GH831690   GH831910   GH832448   GH832559   GH833676   GH833864   GH835117   GH835143   GH835386   GH835569   GH838171   GH839178   GH839239   GH839963   GH841008   GH841097   GH843280   GH843526   GH845130   GH845705   GH846098   GH846293   GH846323   GH846388   GH848609   GH849928   GH850580   GH851727   GH854118   GH854584   GH854585   GH854760   GH854890   GH860058   GH860198   GH862655   GH863049   GH863608   GH863647   GH865531   GH866300   GH868511   GH870288   GH872490   GH875227   GH875562   GH876580   GH877604   GH878791   GH882031   GH883542   GH885503   GH886014   GH889407   GH890536   GH890786   GH890861   GH890923   GH892863   GH893249   GH894880   GH899570   GH900647   GH904498   GH905813   GH905912   GH906080   GH906442   GH907098   GH908623   GH909147   GH911296   GH911603   GH911669   GH912134   GH914612   GH915243   GH915302   GH915365   GH915412   GH915889   GH917291   GH917720   GH919973   GH920410   GH920532   GH920566   GH921388   GH921864   GH922531   GH923904   GH925323   GH926323   GH927229   GH927621   GH928323   GH928420   GH928887   GH930360   GH932129   GH934517   GH934680   GH936012   GH938365   GH940422   GH942280   Y12495 CAA73099
UniProtKB/Swiss-Prot	Q9VQG4
UniProtKB/TrEMBL
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
northern blot Stage Tissue/Position (including subcellular localization) Reference embryonic stage -- adult stage     (Hartenstein et al., 1997)
Additional Descriptive Data
	colt transcript is detected in all developmental stages, but is most abundant in adults. (Hartenstein et al., 1997)
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 5 of adulthood & male -- day 7 of adulthood & male   spermatozoon   (Wasbrough et al., 2010) day 7 of adulthood -- day 49 of adulthood   adult heart   (Cammarato et al., 2011)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0019830    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0019830 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderately high expression. Peak expression observed within 00-18 hour embryonic stages, at stages throughout the larval period, during late pupal stages, in stages of adults of both sexes. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0019830 expression level Developmental Stage   Expression Level embryo 00-02hr    5383 embryo 02-04hr    6246 embryo 04-06hr    4302 embryo 06-08hr    3726 embryo 08-10hr    3199 embryo 10-12hr    4728 embryo 12-14hr    3751 embryo 14-16hr    5075 embryo 16-18hr    4279 embryo 18-20hr    3945 embryo 20-22hr    3632 embryo 22-24hr    3147 larva L1    4715 larva L2    7761 larva L3 12hr old    8867 larva L3 puffstage 1-2    4309 larva L3 puffstage 3-6    2650 larva L3 puffstage 7-9    2386 white prepupae new    2552 white prepupae 12hr    2227 white prepupae 24hr    3671 pupae 2d postWPP    4284 pupae 3d postWPP    3983 pupae 4d postWPP    4959 adult male 01day    7094 adult male 05day    7405 adult male 30day    7094 adult female 01day    6036 adult female 05day    5087 adult female 30day    5653 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (5383) embryo 02-04hr  (6246) embryo 04-06hr  (4302) embryo 06-08hr  (3726) embryo 08-10hr  (3199) embryo 10-12hr  (4728) embryo 12-14hr  (3751) embryo 14-16hr  (5075) embryo 16-18hr  (4279) embryo 18-20hr  (3945) embryo 20-22hr  (3632) embryo 22-24hr  (3147) larva L1  (4715) larva L2  (7761) larva L3 12hr old  (8867) larva L3 puffstage 1-2  (4309) larva L3 puffstage 3-6  (2650) larva L3 puffstage 7-9  (2386) white prepupae new  (2552) white prepupae 12hr  (2227) white prepupae 24hr  (3671) pupae 2d postWPP  (4284) pupae 3d postWPP  (3983) pupae 4d postWPP  (4959) adult male 01day  (7094) adult male 05day  (7405) adult male 30day  (7094) adult female 01day  (6036) adult female 05day  (5087) adult female 30day  (5653) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (5383) embryo 02-04hr  (6246) embryo 04-06hr  (4302) embryo 06-08hr  (3726) embryo 08-10hr  (3199) embryo 10-12hr  (4728) embryo 12-14hr  (3751) embryo 14-16hr  (5075) embryo 16-18hr  (4279) embryo 18-20hr  (3945) embryo 20-22hr  (3632) embryo 22-24hr  (3147) larva L1  (4715) larva L2  (7761) larva L3 12hr old  (8867) larva L3 puffstage 1-2  (4309) larva L3 puffstage 3-6  (2650) larva L3 puffstage 7-9  (2386) white prepupae new  (2552) white prepupae 12hr  (2227) white prepupae 24hr  (3671) pupae 2d postWPP  (4284) pupae 3d postWPP  (3983) pupae 4d postWPP  (4959) adult male 01day  (7094) adult male 05day  (7405) adult male 30day  (7094) adult female 01day  (6036) adult female 05day  (5087) adult female 30day  (5653) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    5383 embryo 02-04hr    6246 embryo 04-06hr    4302 embryo 06-08hr    3726 embryo 08-10hr    3199 embryo 10-12hr    4728 embryo 12-14hr    3751 embryo 14-16hr    5075 embryo 16-18hr    4279 embryo 18-20hr    3945 embryo 20-22hr    3632 embryo 22-24hr    3147 larva L1    4715 larva L2    7761 larva L3 12hr old    8867 larva L3 puffstage 1-2    4309 larva L3 puffstage 3-6    2650 larva L3 puffstage 7-9    2386 white prepupae new    2552 white prepupae 12hr    2227 white prepupae 24hr    3671 pupae 2d postWPP    4284 pupae 3d postWPP    3983 pupae 4d postWPP    4959 adult male 01day    7094 adult male 05day    7405 adult male 30day    7094 adult female 01day    6036 adult female 05day    5087 adult female 30day    5653 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    5383 embryo 02-04hr    6246 embryo 04-06hr    4302 embryo 06-08hr    3726 embryo 08-10hr    3199 embryo 10-12hr    4728 embryo 12-14hr    3751 embryo 14-16hr    5075 embryo 16-18hr    4279 embryo 18-20hr    3945 embryo 20-22hr    3632 embryo 22-24hr    3147 larva L1    4715 larva L2    7761 larva L3 12hr old    8867 larva L3 puffstage 1-2    4309 larva L3 puffstage 3-6    2650 larva L3 puffstage 7-9    2386 white prepupae new    2552 white prepupae 12hr    2227 white prepupae 24hr    3671 pupae 2d postWPP    4284 pupae 3d postWPP    3983 pupae 4d postWPP    4959 adult male 01day    7094 adult male 05day    7405 adult male 30day    7094 adult female 01day    6036 adult female 05day    5087 adult female 30day    5653 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0019830 expression level Developmental Stage   Expression Level embryo 00-02hr    5383 embryo 02-04hr    6246 embryo 04-06hr    4302 embryo 06-08hr    3726 embryo 08-10hr    3199 embryo 10-12hr    4728 embryo 12-14hr    3751 embryo 14-16hr    5075 embryo 16-18hr    4279 embryo 18-20hr    3945 embryo 20-22hr    3632 embryo 22-24hr    3147 larva L1    4715 larva L2    7761 larva L3 12hr old    8867 larva L3 puffstage 1-2    4309 larva L3 puffstage 3-6    2650 larva L3 puffstage 7-9    2386 white prepupae new    2552 white prepupae 12hr    2227 white prepupae 24hr    3671 pupae 2d postWPP    4284 pupae 3d postWPP    3983 pupae 4d postWPP    4959 adult male 01day    7094 adult male 05day    7405 adult male 30day    7094 adult female 01day    6036 adult female 05day    5087 adult female 30day    5653 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (5383) embryo 02-04hr  (6246) embryo 04-06hr  (4302) embryo 06-08hr  (3726) embryo 08-10hr  (3199) embryo 10-12hr  (4728) embryo 12-14hr  (3751) embryo 14-16hr  (5075) embryo 16-18hr  (4279) embryo 18-20hr  (3945) embryo 20-22hr  (3632) embryo 22-24hr  (3147) larva L1  (4715) larva L2  (7761) larva L3 12hr old  (8867) larva L3 puffstage 1-2  (4309) larva L3 puffstage 3-6  (2650) larva L3 puffstage 7-9  (2386) white prepupae new  (2552) white prepupae 12hr  (2227) white prepupae 24hr  (3671) pupae 2d postWPP  (4284) pupae 3d postWPP  (3983) pupae 4d postWPP  (4959) adult male 01day  (7094) adult male 05day  (7405) adult male 30day  (7094) adult female 01day  (6036) adult female 05day  (5087) adult female 30day  (5653) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (5383) embryo 02-04hr  (6246) embryo 04-06hr  (4302) embryo 06-08hr  (3726) embryo 08-10hr  (3199) embryo 10-12hr  (4728) embryo 12-14hr  (3751) embryo 14-16hr  (5075) embryo 16-18hr  (4279) embryo 18-20hr  (3945) embryo 20-22hr  (3632) embryo 22-24hr  (3147) larva L1  (4715) larva L2  (7761) larva L3 12hr old  (8867) larva L3 puffstage 1-2  (4309) larva L3 puffstage 3-6  (2650) larva L3 puffstage 7-9  2386 white prepupae new  (2552) white prepupae 12hr  2227 white prepupae 24hr  (3671) pupae 2d postWPP  (4284) pupae 3d postWPP  (3983) pupae 4d postWPP  (4959) adult male 01day  (7094) adult male 05day  (7405) adult male 30day  (7094) adult female 01day  (6036) adult female 05day  (5087) adult female 30day  (5653) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    5383 embryo 02-04hr    6246 embryo 04-06hr    4302 embryo 06-08hr    3726 embryo 08-10hr    3199 embryo 10-12hr    4728 embryo 12-14hr    3751 embryo 14-16hr    5075 embryo 16-18hr    4279 embryo 18-20hr    3945 embryo 20-22hr    3632 embryo 22-24hr    3147 larva L1    4715 larva L2    7761 larva L3 12hr old    8867 larva L3 puffstage 1-2    4309 larva L3 puffstage 3-6    2650 larva L3 puffstage 7-9    2386 white prepupae new    2552 white prepupae 12hr    2227 white prepupae 24hr    3671 pupae 2d postWPP    4284 pupae 3d postWPP    3983 pupae 4d postWPP    4959 adult male 01day    7094 adult male 05day    7405 adult male 30day    7094 adult female 01day    6036 adult female 05day    5087 adult female 30day    5653 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    5383 embryo 02-04hr    6246 embryo 04-06hr    4302 embryo 06-08hr    3726 embryo 08-10hr    3199 embryo 10-12hr    4728 embryo 12-14hr    3751 embryo 14-16hr    5075 embryo 16-18hr    4279 embryo 18-20hr    3945 embryo 20-22hr    3632 embryo 22-24hr    3147 larva L1    4715 larva L2    7761 larva L3 12hr old    8867 larva L3 puffstage 1-2    4309 larva L3 puffstage 3-6    2650 larva L3 puffstage 7-9    2386 white prepupae new    2552 white prepupae 12hr    2227 white prepupae 24hr    3671 pupae 2d postWPP    4284 pupae 3d postWPP    3983 pupae 4d postWPP    4959 adult male 01day    7094 adult male 05day    7405 adult male 30day    7094 adult female 01day    6036 adult female 05day    5087 adult female 30day    5653 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0019830    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0019830 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, adult crop, larval/adult midgut, adult hindgut, adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, adult spermathecae, adult male accessory gland, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult central nervous system, larval hindgut, larval Malpighian tubules, larval trachea, adult ovary, adult testis. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0019830 expression level Tissue   Expression Level Larval Central Nervous System    201.45 Larval Midgut    663 Larval Hindgut    323 Larval Malpighian Tubules    214 Larval Fat Body    549.3 Larval Salivary Gland    774.9 Larval Trachea    267.125 Larval Carcass    577.525 Adult Head    818.4 Adult Eye    603.05 Adult Brain    210 Adult Thoracic-Abdominal Ganglion    257.9 Adult Crop    797.2 Adult Midgut    1070.9 Adult Hindgut    551.4 Adult Malpighian Tubules    889.9 Adult Fat Body    2103 Adult Salivary Gland    710.2 Adult Heart    1328.8 Adult VirginFemale Spermatheca    2642.7 Adult InseminatedFemale Spermatheca    2928.9 Adult Ovary    330.6 Adult Testis    371.1 Adult Male Accessory Gland    748.2 Adult Carcass    1314.1 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    201.45 Larval Midgut  (663) Larval Hindgut    323 Larval Malpighian Tubules    214 Larval Fat Body  (549.3) Larval Salivary Gland  (774.9) Larval Trachea    267.125 Larval Carcass  (577.525) Adult Head  (818.4) Adult Eye  (603.05) Adult Brain    210 Adult Thoracic-Abdominal Ganglion    257.9 Adult Crop  (797.2) Adult Midgut  (1070.9) Adult Hindgut  (551.4) Adult Malpighian Tubules  (889.9) Adult Fat Body  (2103) Adult Salivary Gland  (710.2) Adult Heart  (1328.8) Adult VirginFemale Spermatheca  (2642.7) Adult InseminatedFemale Spermatheca  (2928.9) Adult Ovary    330.6 Adult Testis    371.1 Adult Male Accessory Gland  (748.2) Adult Carcass  (1314.1) Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    201.45 Larval Midgut    663 Larval Hindgut    323 Larval Malpighian Tubules    214 Larval Fat Body    549.3 Larval Salivary Gland    774.9 Larval Trachea    267.125 Larval Carcass    577.525 Adult Head    818.4 Adult Eye    603.05 Adult Brain    210 Adult Thoracic-Abdominal Ganglion    257.9 Adult Crop    797.2 Adult Midgut  1070.9 Adult Hindgut    551.4 Adult Malpighian Tubules    889.9 Adult Fat Body  (2103) Adult Salivary Gland    710.2 Adult Heart  (1328.8) Adult VirginFemale Spermatheca  (2642.7) Adult InseminatedFemale Spermatheca  (2928.9) Adult Ovary    330.6 Adult Testis    371.1 Adult Male Accessory Gland    748.2 Adult Carcass  (1314.1) Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    201.45 Larval Midgut    663 Larval Hindgut    323 Larval Malpighian Tubules    214 Larval Fat Body    549.3 Larval Salivary Gland    774.9 Larval Trachea    267.125 Larval Carcass    577.525 Adult Head    818.4 Adult Eye    603.05 Adult Brain    210 Adult Thoracic-Abdominal Ganglion    257.9 Adult Crop    797.2 Adult Midgut    1070.9 Adult Hindgut    551.4 Adult Malpighian Tubules    889.9 Adult Fat Body    2103 Adult Salivary Gland    710.2 Adult Heart    1328.8 Adult VirginFemale Spermatheca    2642.7 Adult InseminatedFemale Spermatheca    2928.9 Adult Ovary    330.6 Adult Testis    371.1 Adult Male Accessory Gland    748.2 Adult Carcass    1314.1 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0019830 expression level Tissue   Expression Level Larval Central Nervous System    201.45 Larval Midgut    663 Larval Hindgut    323 Larval Malpighian Tubules    214 Larval Fat Body    549.3 Larval Salivary Gland    774.9 Larval Trachea    267.125 Larval Carcass    577.525 Adult Head    818.4 Adult Eye    603.05 Adult Brain    210 Adult Thoracic-Abdominal Ganglion    257.9 Adult Crop    797.2 Adult Midgut    1070.9 Adult Hindgut    551.4 Adult Malpighian Tubules    889.9 Adult Fat Body    2103 Adult Salivary Gland    710.2 Adult Heart    1328.8 Adult VirginFemale Spermatheca    2642.7 Adult InseminatedFemale Spermatheca    2928.9 Adult Ovary    330.6 Adult Testis    371.1 Adult Male Accessory Gland    748.2 Adult Carcass    1314.1 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    201.45 Larval Midgut  663 Larval Hindgut    323 Larval Malpighian Tubules    214 Larval Fat Body  549.3 Larval Salivary Gland  774.9 Larval Trachea    267.125 Larval Carcass  577.525 Adult Head  (818.4) Adult Eye  603.05 Adult Brain    210 Adult Thoracic-Abdominal Ganglion    257.9 Adult Crop  797.2 Adult Midgut  (1070.9) Adult Hindgut  551.4 Adult Malpighian Tubules  (889.9) Adult Fat Body  (2103) Adult Salivary Gland  710.2 Adult Heart  (1328.8) Adult VirginFemale Spermatheca  (2642.7) Adult InseminatedFemale Spermatheca  (2928.9) Adult Ovary    330.6 Adult Testis    371.1 Adult Male Accessory Gland  748.2 Adult Carcass  (1314.1) Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    201.45 Larval Midgut    663 Larval Hindgut    323 Larval Malpighian Tubules    214 Larval Fat Body    549.3 Larval Salivary Gland    774.9 Larval Trachea    267.125 Larval Carcass    577.525 Adult Head    818.4 Adult Eye    603.05 Adult Brain    210 Adult Thoracic-Abdominal Ganglion    257.9 Adult Crop    797.2 Adult Midgut  1070.9 Adult Hindgut    551.4 Adult Malpighian Tubules    889.9 Adult Fat Body  (2103) Adult Salivary Gland    710.2 Adult Heart  1328.8 Adult VirginFemale Spermatheca  (2642.7) Adult InseminatedFemale Spermatheca  (2928.9) Adult Ovary    330.6 Adult Testis    371.1 Adult Male Accessory Gland    748.2 Adult Carcass  1314.1 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    201.45 Larval Midgut    663 Larval Hindgut    323 Larval Malpighian Tubules    214 Larval Fat Body    549.3 Larval Salivary Gland    774.9 Larval Trachea    267.125 Larval Carcass    577.525 Adult Head    818.4 Adult Eye    603.05 Adult Brain    210 Adult Thoracic-Abdominal Ganglion    257.9 Adult Crop    797.2 Adult Midgut    1070.9 Adult Hindgut    551.4 Adult Malpighian Tubules    889.9 Adult Fat Body    2103 Adult Salivary Gland    710.2 Adult Heart    1328.8 Adult VirginFemale Spermatheca    2642.7 Adult InseminatedFemale Spermatheca    2928.9 Adult Ovary    330.6 Adult Testis    371.1 Adult Male Accessory Gland    748.2 Adult Carcass    1314.1 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    818.4   NA  Eye    603.05   NA  Brain    210   201.45  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    257.9   NA  Crop    797.2   663  Midgut    1070.9   323  Hindgut    551.4   214  Malpighian Tubules    889.9   549.3  Fat Body    2103   774.9  Salivary Gland    710.2   NA  Heart    1328.8   267.125  Trachea    NA   NA  VirginFemale Spermatheca    2642.7   NA  InseminatedFemale Spermatheca    2928.9   NA  Ovary    330.6   NA  Testis    371.1   NA  Male Accessory Gland    748.2   577.525  Carcass    1314.1 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_26
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0019830 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG3057-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal | recessive coltR18 coltR27 coltR29 coltR33 coltR38 semi-lethal | recessive coltP viable, with Scer\GAL4pnr-MD237 coltGD841 Sterility Allele female sterile | poor coltP Phenotype manifest in Allele embryonic/larval tracheal system coltP wing coltP wing & trichome coltP wing vein coltP
Classical Alleles ( 7 )
For All Classical Alleles Show
Allele of colt Class Mutagen Stocks Known lesion coltG2414 P-element activity 1 -- coltP amorphic allele - genetic evidence P-element activity 0 Yes coltR18 Delta2-3 0 Yes coltR27 Delta2-3 0 Yes coltR29 Delta2-3 0 Yes coltR33 Delta2-3 0 Yes coltR38 Delta2-3 0 Yes
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of colt Class Mutagen Stocks Known lesion coltGD841 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes coltKK107449 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Disrupted in	Df(2L)Exel6277 (Ryder, 2004.4.26) Df(2L)N6 (Hartenstein et al., 1997) Df(2L)N19 (Hartenstein et al., 1997)
Not disrupted in	Df(2L)D20 (Hartenstein et al., 1997) Df(2L)dppd14 (Hartenstein et al., 1997) Df(2L)dpp-H34 (Hartenstein et al., 1997)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD841} NA P{KK107449} NA
Insertions
	Type of insertions Name Expression data insertion of enhancer trap P{lacW}coltP No P{lacW}l(2)SH0261SH0261 No miscellaneous insertions P{5'lacW}coltR29 NA P{lacW-ΔR18}coltR18 NA P{lacW-ΔR27}coltR27 NA P{lacW-ΔR33}coltR33 NA P{lacW-ΔR38}coltR38 NA insertion of mobile activating element P{EP}coltG2414 NA
Gene Ontology: Function, Process & Cellular Component ( 8 unique terms )
Terms Based on Experimental Evidence ( 1 term )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
phagocytosis, engulfment inferred from mutant phenotype (Stroschein-Stevenson et al., 2006)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 7 terms )
Molecular Function
CV term Evidence References
carnitine:acyl carnitine antiporter activity inferred from sequence or structural similarity with EMBL:AB017112 (FlyBase, 1992-) inferred from sequence or structural similarity with UniProtKB:O43772 (Sardiello et al., 2003.6.11) transporter activity inferred from sequence or structural similarity with worm dif-1 (assigned by UniProtKB) (Hartenstein et al., 1997) non-traceable author statement (Mechler, 1997.4.10)
Biological Process
CV term Evidence References
acyl carnitine transport inferred from sequence or structural similarity with UniProtKB:O43772 (Sardiello et al., 2003.6.11) carnitine transport inferred from sequence or structural similarity with UniProtKB:O43772 (Sardiello et al., 2003.6.11) mitochondrial transport inferred from sequence or structural similarity with UniProtKB:O43772 (Sardiello et al., 2003.6.11) inferred from sequence or structural similarity with UniProtKB:Q27257 (assigned by UniProtKB) (Hartenstein et al., 1997)
Cellular Component
CV term Evidence References
mitochondrial envelope inferred from sequence or structural similarity with worm dif-1 (assigned by UniProtKB) (Hartenstein et al., 1997) non-traceable author statement (Mechler, 1997.4.10) mitochondrial inner membrane inferred from sequence or structural similarity with EMBL:AB017112 (FlyBase, 1992-) inferred from sequence or structural similarity with UniProtKB:O43772 (Sardiello et al., 2003.6.11)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions colt allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 59693 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0019830 DroID - A comprehensive database of gene and protein interactions. • FBgn0019830 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 33470
Orthologs
Genome-wide drosophilid orthologs	Dere\GG24492 Dgri\dfl Dmoj\GI17472 Dper\GL21169 Dpse\GA28750 Dsec\GM18199 Dsim\GD22804 Dvir\GJ14937 Dwil\GK14780 Dyak\GE15031
Curated drosophilid orthologs
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AGAP006104-PA Anopheles gambiae (mosquito) XP_624739.1 Apis mellifera (honey bee) XP_001950830.1 Acyrthosiphon pisum (pea aphid) At5g46800.1 Arabidopsis thaliana (wall cress) 18840 Batrachochytrium dendrobatidis (chytrid fungus) 288374 Branchiostoma floridae (lancelet) 288463 Branchiostoma floridae (lancelet) BGIBMGA009048-PA Bombyx mori (silk worm) ENSBTAP00000000217 Bos taurus (bovine) CAL0002572 Candida albicans (a form of yeast) CN09658 Caenorhabditis brenneri (small nematode) CBP07178 Caenorhabditis briggsae (nematode) CE28408 Caenorhabditis elegans (worm) ENSCAFP00000017789 Canis familiaris (dog) CAGL0B04543g Candida glabrata (haploid yeast) ENSCINP00000016773 Ciona intestinalis (sea squirt) JA08244 Caenorhabditis japonica (nematode) cn01468 Cryptococcus neoformans (yeast-like fungus) CPIJ002253 Culex pipens (mosquito) CPIJ019834 Culex pipens (mosquito) ENSCPOP00000008357 Cavia porcellus (guinea pig) RP30903 Caenorhabditis remanei (nematode) ENSCSAVP00000007014 Ciona savignyi (sedentary tunicate) 176506 Capitella spl (polychaete worm) DEHA2B05522g Debaryomyces Hansenii (yeast) 231481 Daphnia pulex (daphnia) ENSDARP00000095585 Danio rerio (zebra fish) ENSGACP00000001537 Gymnopilus aculeatus (mushroom) ENSGALP00000011290 Gallus gallus (chicken) ENSP00000326305 Homo sapiens (human) ISCW022609-PA Ixodes scapularis (deer tick) 234443 Lottia gigantea (owl limpet) 17649 Monocosta brevicollis (choanoflagellate) ENSMODP00000016734 Monodelphis domestica (gray opossum) ENSMMUP00000020224 Macaca mulatta (rhesus monkey) ENSMUSP00000035222 Mus musculus (house mouse) 242628 Nematostella vectensis (starlet anemone) XP_001604306.1 Nasonia vitripennis (wasp) ENSOANP00000012059 Ornithorynchus anatinus (platypus) ENSORLP00000023141 Oryzias latipes (japanese killifish) LOC_Os10g42299.1 Oryza sativa (asian rice) 4982 Ostreococcus tauri (green alga) PHUM005708-PA Pediculus humanus (human body louse) PP24069 Pristionchus pacificus (nematode) 155608 Physcomitrella patens (moss) 196448 Physcomitrella patens (moss) ENSPPYP00000015539 Pongo pygmaeus (orangutan) 71364 Phytophthora ramorum (sudden oak death pathogen) 109392 Phytophthora sojae (root rot pathogen) 670402 Populus trichocarpa (black cottonwood) ENSPTRP00000025726 Pan troglodytes (chimpanzee) ENSRNOP00000027520 Rattus norvegicus (norway rat) 4869887 Sorghum bicolor (sorghum) YOR100C Saccharomyces cerevisiae (budding yeast) Smp_064150 Schistosoma mansoni (trematode parasite) SPAC4G9.20c Schizosaccharomyces pombe (fission yeast) XP_787461.1 Strongylocentrotus purpuratus (purple sea urchin) 25969 Trichoplax adhaerens (metazoa) XP_967309.1 Tribolium castaneum (red flour beetle) Tc00.1047053504125.50 Trypanosoma cruzi (parasitic trypanosome) Tc00.1047053504131.190 Trypanosoma cruzi (parasitic trypanosome) ENSTNIP00000017695 Tetraodon nigroviridis (green spotted pufferfish) 5924 Thalassiosira pseudonana (marine diatom) ENSTRUP00000028483 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000020560 Xenopus tropicalis (frog) YALI0C02431g Yarrowia lipolytica (nonconventional yeast) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV13526 LH21951 ISCW022609 FBgn0232621 FBgn0216785 FBgn0202140 FBgn0194198 FBgn0173106 FBgn0250110 JGI_V11_231481 FBgn0158763 FBgn0140216 FBgn0020175 FBgn0116624 CPIJ002253 CPIJ019834 BGIBMGA009048 ACYPI006480 GB16715 AGAP006104 PB21731 PHUM390800 GLEAN_04690
Stocks & Reagents
Stocks Listed in FlyBase ( 4 )
Bloomington	26993 y1 w*; P{EP}coltG2414
VDRC	v106089 P{KK107449}VIE-260B v47965 w1118; P{GD841}v47965 v47964 w1118; P{GD841}v47964/CyO
Genomic Clones ( 1 )
	BACR42J13 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 213 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH17619 GM13207
Other clones	DPiM_GM13207
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH03910 GH05002 GH05023 GH06061 GH06416 GH06745 GH08206 GH10955 GH13067 GH13981 GH19304 GH25908 GH27186 GM16474 LD43312 LP01552 RE07351 RE18750 RE41056 RE70726 RH25274 SD13773 SD24007
Other clones	Dmel_dig_006688_0675_0587 Dmel_neb_010624_0636_1818 Dmel_neb_012888_0401_2272 Dmel_neb_016050_0827_0580 EK116351 EK244857 EN11343 EP12335 IP06338 RP003009306 RP003011242 RP003011881 RP003012874 RP003024981 RP003026872 RP003036220 RP003042760 RP003044087 RP003053077 RP003053603 RP003053649 RP003054855 RP003058616 RP003059335 RP003064367 RP003066046 RP003066047 RP003068115 RP003071564 RP003073909 RP003084054 RP003086004 RP003091887 RP003095385 RP003095728 RP003103008 RP003104239 RP003105878 RP003109783 RP003110054 RP003110588 RP003111255 RP003112237 RP003112583 RP003114695 RP003119528 RP003120974 RP003121041 RP003131186 RP003131191 RP003131498 RP003131768 RP003133995 RP003139753 RP003145344 RP003150043 RP003161717 RP003164330 RP003166787 RP003173423 RP003174585 RP003178093 RP003179609 RP003180881 RP003181842 RP003184140 RP003186171 RP003187162 RP003192990 RP003193062 RP003212573 RP003212858 RP003213955 RP003225519 RP003228890 RP003230421 RP003230944 RP003230969 RP003232171 RP003233755 RP003243361 RP003245125 RP003251110 RP003260349 RP003262594 RP003265020 RP003270143 RP003274495 RP003280443 RP003280604 RP003283998 RP003284171 RP003286404 RP003291718 RP003291862 RP003292780 RP003295508 RP003299740 RP003303321 RP003306393 RP003315252 RP003318434 RP003325588 RP003327879 RP003328473 RP003329603 RP003333266 RP003333560 RP003339785 RP003340622 RP003344448 RP003354432 RP003359041 RP003367623 RP003367956 RP003369352 RP003370072 RP003376864 RP003377341 RP003379577 RP003382072 RP003386475 RP003400278 RP003406955 RP003411342 RP003412254 RP003413255 RP003415169 RP003417200 RP003422940 RP003423175 RP003424053 RP003425412 RP003426546 RP003430875 RP003433298 RP003435829 RP003438851 RP003450525 RP003450797 RP003453062 RP003455203 RP003460462 RP003468955 RP003486317 RP003486773 RP003487936 RP003497726 RP003498556 RP003501229 RP003507671 RP003517170 RP003520638 RP003524243 RP003526006 RP003526818 RP003528157 RP003528273 RP003541758 RP003549458 RP003552194 RP003552360 RP003559967 RP003564042 RP003568534 RP003568892 RP003569718 RP003577392 RP003579601 RP003582578 RP003583333 RP003589862 RP003603461 RP003604138 RP003607324 RP003610444 RP003613310 RP003615005 RP003615391 RP003616012 RP003628912 RP003638112 RP003652760 RP003660669 RP003662561 RP003669932 RP003677341
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0019830 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 33470
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
	S2 cells treated with dsRNA generated against this gene show reduced phagocytosis of Candida albicans compared to untreated cells. (Stroschein-Stevenson et al., 2006) The product of colt is presumed to be involved in a mitochondrial metabolic process and can be critically required in specific morphogenetic mechanisms. (Hartenstein et al., 1997) Embryonic development can take place without zygotic colt function giving rise to larvae with incomplete filling of the tracheal system with gas. If development proceeds further colt function specifically affects morphogenesis of the wings, by altering the differentiation of the wing epithelial cells and by blocking the unfolding and expansion of the wings after eclosion. (Hartenstein et al., 1997)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_057873 NM_205894 NM_205895 NM_205896 RefSeq (Proteins) • NP_477221 NP_995616 NP_995617 NP_995618 DDBJ / EMBL / GenBank • AA803450 AAF51209 AAL39422 AAS64622 AAS64623 AAS64624 AC004379 AC005558 AC009392 AI513226 AY069277 CAA73099 Y12495 Entrez Gene - A searchable database of RefSeq genes. • 33470 UniProtKB/Swiss-Prot • Q9VQG4
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Mitochondrial substrate/solute carrier (IPR018108) Mitochondrial carrier domain (IPR023395) MitoDrome - A database of annotated Dmel nuclear genes encoding mitochondrial proteins • MTDROME03057
Linkouts
	BioGRID - A database of protein and genetic interactions • 59693 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0019830 DroID - A comprehensive database of gene and protein interactions. • FBgn0019830 DRSC - Results from RNAi screens. • FBgn0019830 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0019830 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG3057-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0019830 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 33470 InParanoid A subset of ortholog calls from InParanoid. • AGAP006104-PA Anopheles gambiae (mosquito) XP_624739.1 Apis mellifera (honey bee) XP_001950830.1 Acyrthosiphon pisum (pea aphid) At5g46800.1 Arabidopsis thaliana (wall cress) 18840 Batrachochytrium dendrobatidis (chytrid fungus) 288374 Branchiostoma floridae (lancelet) 288463 Branchiostoma floridae (lancelet) BGIBMGA009048-PA Bombyx mori (silk worm) ENSBTAP00000000217 Bos taurus (bovine) CAL0002572 Candida albicans (a form of yeast) CN09658 Caenorhabditis brenneri (small nematode) CBP07178 Caenorhabditis briggsae (nematode) CE28408 Caenorhabditis elegans (worm) ENSCAFP00000017789 Canis familiaris (dog) CAGL0B04543g Candida glabrata (haploid yeast) ENSCINP00000016773 Ciona intestinalis (sea squirt) JA08244 Caenorhabditis japonica (nematode) cn01468 Cryptococcus neoformans (yeast-like fungus) CPIJ002253 Culex pipens (mosquito) CPIJ019834 Culex pipens (mosquito) ENSCPOP00000008357 Cavia porcellus (guinea pig) RP30903 Caenorhabditis remanei (nematode) ENSCSAVP00000007014 Ciona savignyi (sedentary tunicate) 176506 Capitella spl (polychaete worm) DEHA2B05522g Debaryomyces Hansenii (yeast) 231481 Daphnia pulex (daphnia) ENSDARP00000095585 Danio rerio (zebra fish) ENSGACP00000001537 Gymnopilus aculeatus (mushroom) ENSGALP00000011290 Gallus gallus (chicken) ENSP00000326305 Homo sapiens (human) ISCW022609-PA Ixodes scapularis (deer tick) 234443 Lottia gigantea (owl limpet) 17649 Monocosta brevicollis (choanoflagellate) ENSMODP00000016734 Monodelphis domestica (gray opossum) ENSMMUP00000020224 Macaca mulatta (rhesus monkey) ENSMUSP00000035222 Mus musculus (house mouse) 242628 Nematostella vectensis (starlet anemone) XP_001604306.1 Nasonia vitripennis (wasp) ENSOANP00000012059 Ornithorynchus anatinus (platypus) ENSORLP00000023141 Oryzias latipes (japanese killifish) LOC_Os10g42299.1 Oryza sativa (asian rice) 4982 Ostreococcus tauri (green alga) PHUM005708-PA Pediculus humanus (human body louse) PP24069 Pristionchus pacificus (nematode) 155608 Physcomitrella patens (moss) 196448 Physcomitrella patens (moss) ENSPPYP00000015539 Pongo pygmaeus (orangutan) 71364 Phytophthora ramorum (sudden oak death pathogen) 109392 Phytophthora sojae (root rot pathogen) 670402 Populus trichocarpa (black cottonwood) ENSPTRP00000025726 Pan troglodytes (chimpanzee) ENSRNOP00000027520 Rattus norvegicus (norway rat) 4869887 Sorghum bicolor (sorghum) YOR100C Saccharomyces cerevisiae (budding yeast) Smp_064150 Schistosoma mansoni (trematode parasite) SPAC4G9.20c Schizosaccharomyces pombe (fission yeast) XP_787461.1 Strongylocentrotus purpuratus (purple sea urchin) 25969 Trichoplax adhaerens (metazoa) XP_967309.1 Tribolium castaneum (red flour beetle) Tc00.1047053504125.50 Trypanosoma cruzi (parasitic trypanosome) Tc00.1047053504131.190 Trypanosoma cruzi (parasitic trypanosome) ENSTNIP00000017695 Tetraodon nigroviridis (green spotted pufferfish) 5924 Thalassiosira pseudonana (marine diatom) ENSTRUP00000028483 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000020560 Xenopus tropicalis (frog) YALI0C02431g Yarrowia lipolytica (nonconventional yeast) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 33470 modMine - Data generated by the modENCODE project. • FBgn0019830 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV13526 LH21951 ISCW022609 FBgn0232621 FBgn0216785 FBgn0202140 FBgn0194198 FBgn0173106 FBgn0250110 JGI_V11_231481 FBgn0158763 FBgn0140216 FBgn0020175 FBgn0116624 CPIJ002253 CPIJ019834 BGIBMGA009048 ACYPI006480 GB16715 AGAP006104 PB21731 PHUM390800 GLEAN_04690
Synonyms & Secondary IDs ( 4 )
Reported As
Symbol Synonym	CG3057 (Keleman et al., 2009.8.5, Cammarato et al., 2011) colt (Stroschein-Stevenson et al., 2006, Palanker et al., 2009, Buffin and Gho, 2010, Wasbrough et al., 2010)
Name Synonym	collapsed trachea   congested-like trachea (Hartenstein et al., 1997, Buffin and Gho, 2010, Cammarato et al., 2011)
Secondary FlyBase IDs
References ( 27 )
Generate a list of	All references relating to this gene ( 27 )
List References by type	Research paper  ( 7 ) Supplementary material  ( 8 ) Personal communication to FlyBase  ( 6 ) FlyBase analysis  ( 2 ) DNA/RNA sequence record  ( 1 ) Computer file  ( 1 ) Automatic genome annotation  ( 1 ) Curated genome annotation  ( 1 )
Recent research papers ( 1 )
	Buffin and Gho, 2010, PLoS ONE 5(2): e9285 Laser microdissection of sensory organ precursor cells of Drosophila microchaetes. [FBrf0210039] Show all research papers ...