FlyBase Gene Report: Dmel\colt

General Information

Symbol

Dmel\colt

Species

D. melanogaster

Name

congested-like trachea

Annotation Symbol

CG3057

Feature Type

protein_coding_gene

FlyBase ID

FBgn0019830

Gene Model Status

Current

Stock Availability

6 publicly available

Gene Snapshot

Contributions welcome

Other Summaries

Alliance
Auto summary
Gene Group
UniProtKB
Interactive Fly

Key Links

Genomic Location

Cytogenetic map

23A5-23A5

Sequence location

2L:2,768,590..2,770,069 [-]

Recombination map

2-7

RefSeq locus

NT_033779 REGION:2768590..2770069

Sequence

Get Decorated FASTA

Genomic Maps

JBrowse GBrowse

Help me choose

Other Genome Views

The following external sites may use different assemblies or annotations than FlyBase.

Function

GO Summary Ribbons

Gene Ontology (GO) Annotations (8 terms)

Molecular Function (1 term)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (1 term)

CV Term

Evidence

References

enables carnitine:acyl carnitine antiporter activity

inferred from sequence or structural similarity with UniProtKB:O43772

(Sardiello et al., 2003.6.11)

Biological Process (5 terms)

Terms Based on Experimental Evidence (2 terms)

CV Term

Evidence

References

involved_in epithelial cell morphogenesis

inferred from mutant phenotype

(Hartenstein et al., 1997)

involved_in liquid clearance, open tracheal system

inferred from mutant phenotype

(Hartenstein et al., 1997)

Terms Based on Predictions or Assertions (3 terms)

CV Term

Evidence

References

involved_in acyl carnitine transport

inferred from sequence or structural similarity with UniProtKB:O43772

(Sardiello et al., 2003.6.11)

involved_in carnitine transport

inferred from sequence or structural similarity with UniProtKB:O43772

(Sardiello et al., 2003.6.11)

involved_in mitochondrial transport

inferred from sequence or structural similarity with UniProtKB:O43772

(Sardiello et al., 2003.6.11)

Cellular Component (2 terms)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (2 terms)

CV Term

Evidence

References

located_in integral component of membrane

inferred from sequence model

(Hartenstein et al., 1997)

located_in mitochondrial inner membrane

inferred from sequence or structural similarity with UniProtKB:O43772

(Sardiello et al., 2003.6.11)

Gene Group (FlyBase)

SLC25 FAMILY OF MITOCHONDRIAL TRANSPORTERS

Protein Family (UniProt)

Belongs to the mitochondrial carrier (TC 2.A.29) family. (Q9VQG4)

Protein Signatures (InterPro)

Summaries

Gene Group (FlyBase)

SLC25 FAMILY OF MITOCHONDRIAL TRANSPORTERS -: The solute carrier family 25 (SLC25) or mitochondrial carrier family (MCF) members shuttle metabolites, nucleotides and cofactors across the inner mitochondrial membrane. (Adapted from FBrf0212481, FBrf0212949 and PMID:23266187).

Protein Function (UniProtKB)

Putative mitochondrial carrier of unknown solute specificity. Required for gas-filling of the tracheal system at hatching time of the embryo and for normal epithelial morphogenesis of the wings.

(UniProt, Q9VQG4)

Gene Model and Products

Number of Transcripts

Number of Unique Polypeptides

Please see the JBrowse view of Dmel\colt for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)

Isoform displayed:

Pfam protein domains

InterPro name

classification

start

end

Protein Domains (via SMART)

Isoform displayed:

SMART protein domains

InterPro name

classification

start

end

Comments on Gene Model

Multiple additional alternative polyA sites documented in FBrf0099765.

Gene model reviewed during 5.47

Sequence Ontology: Class of Gene

nuclear_gene

protein_coding_gene

retrotransposed_protein_coding_gene

(dos Santos, 2014, Pan and Zhang, 2009, Langille and Clark, 2007)

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Assoc. CDS (aa)

colt-RA

FBtr0077731

NM_057873

1480

306

colt-RD

FBtr0077734

NM_205894

1449

306

Additional Transcript Data and Comments

Reported size (kB)

1.4 (northern blot)

(Hartenstein et al., 1997)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank

colt-PA

FBpp0077414

33.0

306

9.96

NP_477221

AAF51209

colt-PD

FBpp0089377

33.0

306

9.96

NP_995616

AAS64624

Polypeptides with Identical Sequences

The group(s) of polypeptides indicated below share identical sequence to each other.

306 aa isoforms: colt-PA, colt-PD

Additional Polypeptide Data and Comments

Reported size (kDa)

306 (aa); 33 (kD observed)

(Hartenstein et al., 1997)

Comments

External Data

Crossreferences

InterPro - A database of protein families, domains and functional sites

Linkouts

Sequences Consistent with the Gene Model

Nucleotide / Polypeptide Records

UniProt

Q9VQG4

Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\colt using the Feature Mapper tool.

External Data

Crossreferences

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

colt_1

Linkouts

Expression Data

Expression Summary Ribbons

Colored tiles in ribbon indicate that expression data has been curated by FlyBase for that anatomical location. Colorless tiles indicate that there is no curated data for that location.

For complete stage-specific expression data, view the modENCODE Development RNA-Seq section under High-Throughput Expression below.

Transcript Expression

northern blot

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage -- adult stage

(Hartenstein et al., 1997)

Additional Descriptive Data

colt transcript is detected in all developmental stages, but is most abundant in adults.

(Hartenstein et al., 1997)

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

mass spectroscopy

Stage

Tissue/Position (including subcellular localization)

Reference

day 5 of adulthood & male -- day 7 of adulthood & male

spermatozoon

(Wasbrough et al., 2010)

day 7 of adulthood -- day 49 of adulthood

adult heart

(Cammarato et al., 2011)

adult stage

adult head

• membrane

(Aradska et al., 2015)

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

GBrowse - Visual display of RNA-Seq signals

View Dmel\colt in GBrowse 2

RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region

View exonic expression by developmental stage for Dmel\colt

View exonic expression by tissue for Dmel\colt

Bulk Downloads

RNA-Seq RPKM values for all genes

Reference

See Gelbart and Emmert, 2013 for analysis details and data files for all genes.

Developmental Proteome: Life Cycle

Developmental Proteome: Embryogenesis

External Data and Images

Linkouts

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

FBgn0019830

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

CG3057-RA

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG3057

Flygut - An atlas of the Drosophila adult midgut

FBgn0019830

Images

FlyBase Wiki

Image Based Resources

Alleles, Insertions, and Transgenic Constructs

Classical and Insertion Alleles ( 7 )

For All Classical and Insertion Alleles Show

Other relevant insertions

Transgenic Constructs ( 5 )

For All Alleles Carried on Transgenic Constructs Show

Transgenic constructs containing/affecting coding region of colt

Transgenic constructs containing regulatory region of colt

Deletions and Duplications ( 6 )

Disrupted in

Df(2L)Exel6277

(Ryder, 2004.4.26)

Df(2L)N6

(Hartenstein et al., 1997)

Df(2L)N19

(Hartenstein et al., 1997)

Not disrupted in

Df(2L)D20

(Hartenstein et al., 1997)

Df(2L)dpp^d14

(Hartenstein et al., 1997)

Df(2L)dpp-H34

(Hartenstein et al., 1997)

Phenotypes

For more details about a specific phenotype click on the relevant allele symbol.

Lethality

Allele

lethal | recessive

partially lethal - majority die | recessive

colt^P

viable, with Dcr-2^UAS.cDa, Scer\GAL4^elav.PLu

colt^GD841

viable, with Scer\GAL4^pnr-MD237

colt^GD841

viable, with Scer\GAL4^tin.CΔ4

colt^GD841

Sterility

Allele

female semi-sterile

colt^P

Other Phenotypes

Allele

size defective | third instar larval stage, with Scer\GAL4^Cg.PA

colt^HMC03354

Phenotype manifest in

Allele

embryonic/larval fat body | third instar larval stage, with Scer\GAL4^Cg.PA

colt^HMC03354

embryonic/larval tracheal system

colt^P

mitochondrion | third instar larval stage, with Scer\GAL4^Cg.PA

colt^HMC03354

wing

colt^P

wing & trichome

colt^P

wing vein

colt^P

Orthologs

Downloads

Download All DIOPT Orthologs

Download All OrthoDB Orthologs

Human Orthologs (via DIOPT v8.0)

Homo sapiens (Human) (8)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Hsap\SLC25A20

14 of 15

Yes

Hsap\SLC25A29

3 of 15

Hsap\SLC25A45

3 of 15

Hsap\LOC107986453

1 of 15

Yes

1 of 15

1 of 15

1 of 15

1 of 15

Model Organism Orthologs (via DIOPT v8.0)

Mus musculus (laboratory mouse) (5)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Mmus\Slc25a20

14 of 15

Yes

3 of 15

3 of 15

2 of 15

1 of 15

Rattus norvegicus (Norway rat) (6)

Rnor\Slc25a20

12 of 13

Yes

3 of 13

2 of 13

2 of 13

1 of 13

1 of 13

Xenopus tropicalis (Western clawed frog) (9)

Xtro\slc25a20

12 of 12

Yes

6 of 12

2 of 12

2 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

Danio rerio (Zebrafish) (10)

Drer\slc25a20

13 of 15

Yes

Drer\si:dkey-150i13.2

8 of 15

2 of 15

2 of 15

2 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

Caenorhabditis elegans (Nematode, roundworm) (4)

Cele\dif-1

13 of 15

Yes

Cele\R07B7.10

3 of 15

Cele\slc-25A29

3 of 15

Cele\T10F2.2

1 of 15

Arabidopsis thaliana (thale-cress) (3)

Atha\BOU

7 of 9

Yes

Atha\BAC2

2 of 9

Atha\MBAC1

2 of 9

Saccharomyces cerevisiae (Brewer's yeast) (4)

Scer\CRC1

14 of 15

Yes

Scer\YMC1

4 of 15

Scer\YMC2

4 of 15

Scer\ORT1

2 of 15

Schizosaccharomyces pombe (Fission yeast) (2)

Spom\SPAC4G9.20c

4 of 12

Yes

Spom\SPBC29A3.11c

1 of 12

Ortholog(s) in Drosophila Species (via OrthoDB v9.1) ( EOG09190BTS )

Organism

Common Name

Gene

AAA Syntenic Ortholog

Multiple Dmel Genes in this Orthologous Group

Drosophila suzukii

Spotted wing Drosophila

Drosophila simulans

Drosophila sechellia

Drosophila erecta

Drosophila yakuba

Drosophila ananassae

Drosophila pseudoobscura pseudoobscura

Dpse\GA28750

Drosophila persimilis

Dper\GL21169

Drosophila willistoni

Dwil\GK14780

Drosophila virilis

Dvir\GJ14937

Drosophila mojavensis

Dmoj\GI17472

Drosophila grimshawi

Dgri\dfl

Orthologs in non-Drosophila Dipterans (via OrthoDB v9.1) ( EOG09150DQI )

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Musca domestica

House fly

Mdoa\17015516

Glossina morsitans

Tsetse fly

Gmor\GMOY007568

Lucilia cuprina

Australian sheep blowfly

Lcup\FF38_01357

Mayetiola destructor

Hessian fly

Mdes\Mdes006736

Anopheles gambiae

Malaria mosquito

Agam\AGAP006104

Culex quinquefasciatus

Southern house mosquito

Cqui\CPIJ019834

Culex quinquefasciatus

Southern house mosquito

Cqui\CPIJ002253

Orthologs in non-Dipteran Insects (via OrthoDB v9.1) ( EOG090W0GQF )

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Bombyx mori

Silkmoth

Bmor\BGIBMGA009048

Danaus plexippus

Monarch butterfly

Dple\DPOGS200981-PA

Heliconius melpomene

Postman butterfly

Hmel\HMEL002380

Apis florea

Little honeybee

Aflo\2265097492

Apis mellifera

Western honey bee

Amel\LOC552361

Bombus impatiens

Common eastern bumble bee

Bimp\BIMP17964

Bombus impatiens

Common eastern bumble bee

Bimp\BIMP17965

Bombus terrestris

Buff-tailed bumblebee

Bter\15209038

Linepithema humile

Argentine ant

Lhum\LH21950

Linepithema humile

Argentine ant

Lhum\LH21951

Megachile rotundata

Alfalfa leafcutting bee

Mrot\MROTU:0025f8

Nasonia vitripennis

Parasitic wasp

Nvit\Nasvi2EG007663

Dendroctonus ponderosae

Mountain pine beetle

Dpod\YQE_03288

Tribolium castaneum

Red flour beetle

Tcas\TC004690

Pediculus humanus

Human body louse

Phum\PHUM390800

Rhodnius prolixus

Kissing bug

Rpro\RPRC005034

Cimex lectularius

Bed bug

Clec\CLEC012996

Acyrthosiphon pisum

Pea aphid

Apim\ACYPI006480

Zootermopsis nevadensis

Nevada dampwood termite

Znev\Znev_06398

Orthologs in non-Insect Arthropods (via OrthoDB v9.1) ( EOG090X0GR8 )

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Strigamia maritima

European centipede

Smar\SMAR005471

Ixodes scapularis

Black-legged tick

Isca\ISCW022609

Stegodyphus mimosarum

African social velvet spider

Smim\KFM61424.1

Tetranychus urticae

Two-spotted spider mite

Turt\tetur16g02400

Tetranychus urticae

Two-spotted spider mite

Turt\tetur16g02710

Daphnia pulex

Water flea

Dpux\DAPPUDRAFT_231481

Orthologs in non-Arthropod Metazoa (via OrthoDB v9.1) ( EOG091G0HVE )

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Strongylocentrotus purpuratus

Purple sea urchin

Spur\Sp-Slc25a29

Strongylocentrotus purpuratus

Purple sea urchin

Spur\Sp-Slc25a20

Strongylocentrotus purpuratus

Purple sea urchin

Spur\Sp-Slc25a15

Strongylocentrotus purpuratus

Purple sea urchin

Spur\Sp-Slc25a20L

Ciona intestinalis

Vase tunicate

Cint\ENSCING00000005184

Ciona intestinalis

Vase tunicate

Cint\LOC100175209

Ciona intestinalis

Vase tunicate

Cint\LOC100175857

Ciona intestinalis

Vase tunicate

Cint\LOC100180039

Gallus gallus

Domestic chicken

Ggal\SLC25A29

Gallus gallus

Domestic chicken

Ggal\ENSGALG00000028227

Gallus gallus

Domestic chicken

Ggal\ENSGALG00000006341

Gallus gallus

Domestic chicken

Ggal\ENSGALG00000011225

Gallus gallus

Domestic chicken

Ggal\SLC25A15

Paralogs

Downloads

Download All DIOPT Paralogs

Paralogs (via DIOPT v8.0)

Drosophila melanogaster (Fruit fly) (44)

Gene Symbol

Score

Source

Alignment

8 of 10

6 of 10

4 of 10

3 of 10

1 of 10

1 of 10

1 of 10

1 of 10

1 of 10

1 of 10

1 of 10

1 of 10

1 of 10

1 of 10

1 of 10

1 of 10

1 of 10

1 of 10

1 of 10

1 of 10

1 of 10

1 of 10

1 of 10

1 of 10

1 of 10

1 of 10

1 of 10

GC1

1 of 10

GC2

1 of 10

1 of 10

1 of 10

1 of 10

1 of 10

1 of 10

1 of 10

sea

1 of 10

1 of 10

1 of 10

1 of 10

1 of 10

1 of 10

1 of 10

1 of 10

1 of 10

Human Disease Associations

FlyBase Human Disease Model Reports

Disease Model Summary Ribbon

Disease Ontology (DO) Annotations

Models Based on Experimental Evidence ( 0 )

Allele

Disease

Evidence

References

Potential Models Based on Orthology ( 1 )

Human Ortholog

Disease

Evidence

References

SLC25A20; solute carrier family 25 member 20

model of carnitine-acylcarnitine translocase deficiency

IEA

(FlyBase, 2019-)

Modifiers Based on Experimental Evidence ( 0 )

Allele

Disease

Interaction

References

Disease Associations of Human Orthologs (via DIOPT v8.0 and OMIM)

Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.

Homo sapiens (Human)

Gene name

Score

OMIM

OMIM Phenotype

DO term

Complementation?

Transgene?

SLC25A20; solute carrier family 25 member 20

14 of 15

613698

CARNITINE-ACYLCARNITINE TRANSLOCASE DEFICIENCY; CACTD

carnitine-acylcarnitine translocase deficiency

SLC25A29; solute carrier family 25 member 29

3 of 15

615064

SLC25A45; solute carrier family 25 member 45

3 of 15

610825

Functional Complementation Data

Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.

Interactions

Summary of Physical Interactions

esyN Network Diagram

Interactions Browser

View in Interactions Browser

Please see the Physical Interaction reports below for full details

protein-protein

Physical Interaction

Assay

References

colt - CG9922

experimental knowledge based

(Guruharsha et al., 2011)

colt - Mpcp2

experimental knowledge based

(Guruharsha et al., 2011)

Summary of Genetic Interactions

esyN Network Diagram

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

External Data

Linkouts

BioGRID - A database of protein and genetic interactions.

59693

DroID - A comprehensive database of gene and protein interactions.

FBgn0019830

InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.

33470

MIST (protein-protein) - An integrated Molecular Interaction Database

colt

Pathways

Signaling Pathways (FlyBase)

Metabolic Pathways

External Data

Linkouts

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

Import of palmitoyl-CoA into the mitochondrial matrix

Genomic Location and Detailed Mapping Data

Chromosome (arm)

Recombination map

2-7

Cytogenetic map

23A5-23A5

Sequence location

2L:2,768,590..2,770,069 [-]

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

23A5-23A5

Limits computationally determined from genome sequence between P{EP}EP832 and P{PZ}oho23B⁰³⁵⁷⁵

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

23A-23A

(Mechler, 1997.4.10)

23A-23A

(determined by in situ hybridisation)

(Hartenstein et al., 1997)

Experimentally Determined Recombination Data

Location

2-7

(FlyBase, 2016)

2-6.2

(Comeron et al., 2012)

Left of (cM)

Right of (cM)

Notes

Stocks and Reagents

Stocks (6)

Bloomington

51798

y¹ v¹; P{TRiP.HMC03354}attP40

26993

y¹ w^*; P{EP}colt^G2414

78634

y¹ sc^* v¹ sev²¹; P{TOE.GS01869}attP40

VDRC

v106089

P{KK107449}VIE-260B

v47965

w¹¹¹⁸; P{GD841}v47965

v47964

w¹¹¹⁸; P{GD841}v47964/CyO

Genomic Clones (9)

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones (232)

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequenced

BDGP DGC clones

Other clones

DPiM_GM13207

Drosophila Genomics Resource Center cDNA clones

For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

FBgn0019830

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi and Array Information

Linkouts

DRSC - Results frm RNAi screens

FBgn0019830

GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents

33470

Antibody Information

Laboratory Generated Antibodies

Commercially Available Antibodies

Other Information

Relationship to Other Genes

Source for database identify of

Source for database merge of

Additional comments

The colt gene may have been derived from the CG5646 gene by retroposition.

(Pan and Zhang, 2009)

The colt gene may have been derived from the CG3476 gene by retroposition.

(Langille and Clark, 2007)

Other Comments

S2 cells treated with dsRNA generated against this gene show reduced phagocytosis of Candida albicans compared to untreated cells.

(Stroschein-Stevenson et al., 2006)

The product of colt is presumed to be involved in a mitochondrial metabolic process and can be critically required in specific morphogenetic mechanisms.

(Hartenstein et al., 1997)

Embryonic development can take place without zygotic colt function giving rise to larvae with incomplete filling of the tracheal system with gas. If development proceeds further colt function specifically affects morphogenesis of the wings, by altering the differentiation of the wing epithelial cells and by blocking the unfolding and expansion of the wings after eclosion.

(Hartenstein et al., 1997)

Origin and Etymology

Discoverer

Etymology

Identification

External Crossreferences and Linkouts ( 40 )

Sequence Crossreferences

NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

33470

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.

RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.

UniProt/Swiss-Prot - Manually annotated and reviewed records of protein sequence and functional information

Q9VQG4

Other crossreferences

Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones

FBgn0019830

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

colt_1

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG3057

Flygut - An atlas of the Drosophila adult midgut

FBgn0019830

GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents

33470

iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)

TC004690

InterPro - A database of protein families, domains and functional sites

KEGG Genes - Molecular building blocks of life in the genomic space.

Dmel_CG3057

modMine - A data warehouse for the modENCODE project

FBgn0019830

Linkouts

BioGRID - A database of protein and genetic interactions.

59693

DPiM - Drosophila Protein interaction map

FBgn0019830

DroID - A comprehensive database of gene and protein interactions.

FBgn0019830

DRSC - Results frm RNAi screens

FBgn0019830

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

FBgn0019830

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

CG3057-RA

FlyCyc Genes - Genes from a BioCyc PGDB for Dmel

FBGN0019830

FlyMine - An integrated database for Drosophila genomics

FBgn0019830

InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.

33470

MIST (protein-protein) - An integrated Molecular Interaction Database

colt

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

Import of palmitoyl-CoA into the mitochondrial matrix

Synonyms and Secondary IDs (6)

Reported As

Name Synonyms

collapsed trachea

congested-like trachea

(Manzo et al., 2018, Cammarato et al., 2011, Buffin and Gho, 2010, Hartenstein et al., 1997)

Secondary FlyBase IDs

Datasets (0)

Study focus (0)

Experimental Role

Project

Project Type

Title

References (55)

The following external sites may use different assemblies or annotations than FlyBase.

Report Sections